Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 719 of 770
Found at i:227342623 original size:80 final size:80
Alignment explanation
Indices: 227342486--227342697 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
227342476 CAATTGAATG
* * * *
227342486 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
227342550 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
227342566 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
227342631 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
227342646 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
227342698 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:227350320 original size:93 final size:93
Alignment explanation
Indices: 227350208--227350379 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
227350198 GCCCATAAGT
* *
227350208 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
227350273 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
227350301 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
227350366 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
227350380 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:227350375 original size:46 final size:46
Alignment explanation
Indices: 227350200--227350375 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
227350190 TGTAACCCGC
* * *
227350200 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
227350246 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
227350296 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
227350339 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
227350376 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:227352804 original size:30 final size:30
Alignment explanation
Indices: 227352760--227352848 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
227352750 CAAAGATAAC
227352760 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
227352789 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
227352819 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
227352849 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:227352808 original size:15 final size:15
Alignment explanation
Indices: 227352760--227352839 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
227352750 CAAAGATAAC
*
227352760 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
227352774 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
227352789 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
227352804 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
227352819 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
227352834 AAGAAA
1 AAGAAA
227352840 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:227352848 original size:15 final size:15
Alignment explanation
Indices: 227352771--227352848 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
227352761 AGAAAACCGA
227352771 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
227352786 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
227352800 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
227352815 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
227352831 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
227352846 ATA
1 ATA
227352849 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:227355912 original size:93 final size:93
Alignment explanation
Indices: 227355800--227355971 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
227355790 GCCCATAAGT
* *
227355800 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
227355865 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
227355893 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
227355958 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
227355972 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:227355967 original size:46 final size:46
Alignment explanation
Indices: 227355792--227355967 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
227355782 TGTAACCCGC
* * *
227355792 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
227355838 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
227355888 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
227355931 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
227355968 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:227359041 original size:79 final size:79
Alignment explanation
Indices: 227358903--227359110 Score: 305
Period size: 79 Copynumber: 2.7 Consensus size: 79
227358893 CATTTGAATG
* *
227358903 ATACCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACTCGAAGGCA
1 ATACCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCA
*
227358966 TTTGTGCGAGTTGTT
65 TTTGTGCGAGTTGCT
* *
227358981 ATATCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCAT
1 ATACCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCAT
227359046 TTGTGCGAGTTGCT
66 TTGTGCGAGTTGCT
* * * *
227359060 ATACCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
227359111 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 18 0.15
79 97 0.83
80 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (79 bp):
ATACCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGCT
Found at i:227359119 original size:39 final size:40
Alignment explanation
Indices: 227358906--227359110 Score: 285
Period size: 39 Copynumber: 5.2 Consensus size: 40
227358896 TTGAATGATA
* *
227358906 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
227358945 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
227358985 -CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
227359024 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA-
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
227359063 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
227359103 CC-GGCTAA
1 CCGGGCTAA
227359111 ATTCCGAAGA
Statistics
Matches: 150, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 86 0.57
40 62 0.41
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:227381316 original size:14 final size:14
Alignment explanation
Indices: 227381297--227381325 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
227381287 CCACATCAAT
227381297 CAGAAATGTTTCAC
1 CAGAAATGTTTCAC
227381311 CAGAAATGTTTCAC
1 CAGAAATGTTTCAC
227381325 C
1 C
227381326 TCCTCGGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (14 bp):
CAGAAATGTTTCAC
Found at i:227386581 original size:28 final size:27
Alignment explanation
Indices: 227386518--227386587 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
227386508 ATAGTGAGTC
227386518 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
227386545 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
*
227386573 CGCATACTTAGTGCT
1 CGCACACTTAGTGCT
227386588 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:227389070 original size:40 final size:40
Alignment explanation
Indices: 227389004--227389147 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
227388994 AAATTGAATG
* * *
227389004 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
227389043 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
227389083 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
227389123 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
227389148 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:227389168 original size:40 final size:40
Alignment explanation
Indices: 227389041--227389170 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
227389031 ATGCTGGAAA
* *
227389041 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
227389081 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
227389121 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
227389161 TTATATCCGG
1 TTATATCCGG
227389171 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:227397216 original size:40 final size:40
Alignment explanation
Indices: 227397089--227397218 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
227397079 ATGCTGGAAA
* *
227397089 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
227397129 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
227397169 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
227397209 TTATATCCGG
1 TTATATCCGG
227397219 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:227397217 original size:80 final size:78
Alignment explanation
Indices: 227397053--227397218 Score: 194
Period size: 80 Copynumber: 2.1 Consensus size: 78
227397043 AAATTGAATG
*
227397053 ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
227397118 TGTGCTAGTGGCT
66 TGTGCTAGTGGCT
* * * ** *
227397131 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGACATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
227397195 -ATTCGTGC-ACGTGGTT
63 AATT-GTGCTA-GTGGCT
227397211 ATATCCGG
1 ATATCCGG
227397219 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 13 0.18
79 16 0.22
80 45 0.61
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:227405889 original size:28 final size:27
Alignment explanation
Indices: 227405826--227405895 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
227405816 ATAGTGAGTC
227405826 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
227405853 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
227405881 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
227405896 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:227410019 original size:40 final size:40
Alignment explanation
Indices: 227409964--227410212 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
227409954 GAACATTGGA
227409964 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227410004 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227410043 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227410083 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
227410123 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
227410162 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
227410203 CTATATCCGG
1 ATATATCCGG
227410213 TTAAATCCCG
Statistics
Matches: 189, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 41 0.22
40 148 0.78
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:227410095 original size:79 final size:79
Alignment explanation
Indices: 227409964--227410212 Score: 374
Period size: 79 Copynumber: 3.1 Consensus size: 79
227409954 GAACATTGGA
227409964 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
227410029 CATTCGTGCGAGTG
66 CATTCGTGCGAGTG
227410043 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
227410108 CATTCGTGCGAGTTG
66 CATTCGTGCGAG-TG
* * * * * * * *
227410123 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TCACCAAATCCGGGTTATGACCCGAAG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAG
*
227410187 GCAATCGTGCGAGTCG
65 GCATTCGTGCGAGT-G
*
227410203 CTATATCCGG
1 ATATATCCGG
227410213 TTAAATCCCG
Statistics
Matches: 157, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 80 0.51
80 77 0.49
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (79 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGG
CATTCGTGCGAGTG
Found at i:227418186 original size:40 final size:40
Alignment explanation
Indices: 227418131--227418380 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
227418121 AACATTGGAA
227418131 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227418171 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227418211 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
227418251 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
227418291 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
227418330 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
227418371 CTATATCCGG
1 ATATATCCGG
227418381 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:227423250 original size:40 final size:40
Alignment explanation
Indices: 227423165--227423343 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 40
227423155 GCTCGATTGT
* * *
227423165 CTTCGGGACA-TAGCCCGG-TTATAGTGATTC-CACAATTGC
1 CTTCGGGA-ATTAGCCCGGATT-TAGTAACTCGCACAAATGC
* *
227423204 CTTCGGGAATTAGCCCAGATTTAGTAACTCGCATAAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * * *
227423244 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACCAATGC
1 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
* * *
227423284 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
*
227423325 CTTC-GGACTTAGCCCGGAT
1 CTTCGGGAATTAGCCCGGAT
227423344 ATCATTCGAA
Statistics
Matches: 113, Mismatches: 21, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 22 0.19
40 76 0.67
41 14 0.12
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:227432407 original size:40 final size:40
Alignment explanation
Indices: 227432335--227432487 Score: 220
Period size: 40 Copynumber: 3.9 Consensus size: 40
227432325 TTCCAGCGCA
* * *
227432335 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
*
227432374 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
227432414 AGCCTGTGGGTCTTTAAGCCTGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
227432454 AGCCTGTGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
227432488 AATATCATAC
Statistics
Matches: 104, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.15
40 88 0.85
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:227433779 original size:21 final size:21
Alignment explanation
Indices: 227433754--227433794 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
227433744 CGGCAATTTC
227433754 AATTCATACCT-TTCAACCATG
1 AATTCA-ACCTATTCAACCATG
*
227433775 AATTCAACTTATTCAACCAT
1 AATTCAACCTATTCAACCAT
227433795 CATTTAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTATTCAACCATG
Found at i:227433804 original size:21 final size:21
Alignment explanation
Indices: 227433765--227433804 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
227433755 ATTCATACCT
* *
227433765 TTCAACCATGAATTCAACTTA
1 TTCAACCATCAATTAAACTTA
*
227433786 TTCAACCATCATTTAAACT
1 TTCAACCATCAATTAAACT
227433805 ACTTAACATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (21 bp):
TTCAACCATCAATTAAACTTA
Found at i:227436077 original size:28 final size:29
Alignment explanation
Indices: 227436045--227436143 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
227436035 ATAATAAGCC
*
227436045 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
227436073 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
227436101 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
227436130 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227436144 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:227444047 original size:28 final size:29
Alignment explanation
Indices: 227444015--227444113 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
227444005 ATAATAAGCC
*
227444015 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
227444043 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
227444071 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
227444100 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227444114 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:227452062 original size:28 final size:29
Alignment explanation
Indices: 227452030--227452128 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
227452020 ATAATAAGCC
*
227452030 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
227452058 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
227452086 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
227452115 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227452129 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:227459066 original size:40 final size:40
Alignment explanation
Indices: 227459000--227459150 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
227458990 AAATTGAATG
* * *
227459000 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
227459039 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
227459079 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
227459119 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
227459151 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:227459164 original size:40 final size:40
Alignment explanation
Indices: 227459037--227459166 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
227459027 ATGCTGGAAA
* * * *
227459037 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
227459077 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
227459117 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
227459157 TTATATCCGG
1 TTATATCCGG
227459167 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:227467130 original size:42 final size:40
Alignment explanation
Indices: 227467001--227467130 Score: 106
Period size: 40 Copynumber: 3.2 Consensus size: 40
227466991 AAATTGAATG
* * *
227467001 ATATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAA--ATT
1 ATATCCGGGCTAAGA-CCCGAAGGCAATTGTGCT--AATGGTT
* * *
227467041 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAATGGTT
* *
227467081 ACATCCGGGCTAAGACCCGAAGGCATTCGTGTGC-ACATGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAAT--TGTGCTA-ATGGTT
227467123 ATATCCGG
1 ATATCCGG
227467131 TTATATTCCG
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
38 1 0.01
40 53 0.74
41 2 0.03
42 16 0.22
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAATGGTT
Found at i:227468865 original size:42 final size:43
Alignment explanation
Indices: 227468803--227468918 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
227468793 AAAATCTGAA
* *
227468803 CTCGTTGAGTGGTCCAAGTTCATTA-GGTATG-TAGAATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATTATGG-ATGCGAGAATCCGAG
* * * *
227468845 CTTGTTGAGAGGTCCGAGTTCATTATGGATGCGAGCATTCGAG
1 CTCGTTGAGTGGTCCGAGTTCATTATGGATGCGAGAATCCGAG
* *
227468888 CTCATTGAGTGGTCCGAGTTCATGATGGATG
1 CTCGTTGAGTGGTCCGAGTTCATTATGGATG
227468919 TGATTCATGT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 25 0.40
43 37 0.60
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCGAGTTCATTATGGATGCGAGAATCCGAG
Found at i:227469711 original size:17 final size:19
Alignment explanation
Indices: 227469669--227469712 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
227469659 ATGAAATTTT
*
227469669 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
227469688 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
227469706 AA-TATTA
1 AATTATTA
227469713 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:227473617 original size:17 final size:19
Alignment explanation
Indices: 227473575--227473618 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
227473565 ATGAAATTTT
*
227473575 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
227473594 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
227473612 AA-TATTA
1 AATTATTA
227473619 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:227480397 original size:40 final size:40
Alignment explanation
Indices: 227480301--227480452 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
227480291 CGAATGGTAT
* * * *
227480301 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
227480342 CCGGG-TCAATTCCCGAAGGCATTTGTACGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
227480382 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
227480422 CCGGGCTATGTCCCGAAGGC-TTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
227480453 CGCTATATCC
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 9 0.10
40 59 0.64
41 24 0.26
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:227485153 original size:40 final size:40
Alignment explanation
Indices: 227485026--227485155 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
227485016 ATGCTGGAAA
* * *
227485026 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
227485066 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
227485106 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
227485146 TTATATCCGG
1 TTATATCCGG
227485156 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:227490682 original size:80 final size:80
Alignment explanation
Indices: 227490598--227490746 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
227490588 TATGGTAACC
* * * *
227490598 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
227490662 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
227490678 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
227490743 CCGG
66 CCGG
227490747 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:227490688 original size:40 final size:38
Alignment explanation
Indices: 227490639--227490746 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
227490629 ATCACGATTT
*
227490639 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
227490679 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
227490719 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
227490747 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:227498771 original size:80 final size:80
Alignment explanation
Indices: 227498687--227498835 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
227498677 TATGGTAACC
* * * *
227498687 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
227498751 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
227498767 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
227498832 CCGG
66 CCGG
227498836 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:227498777 original size:40 final size:38
Alignment explanation
Indices: 227498728--227498835 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
227498718 ATCACGATTT
*
227498728 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
227498768 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
227498808 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
227498836 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:227504574 original size:28 final size:28
Alignment explanation
Indices: 227504509--227504609 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
227504499 ATAGTGAATC
*
227504509 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
227504538 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
227504566 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
227504596 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227504610 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:227512507 original size:28 final size:28
Alignment explanation
Indices: 227512442--227512542 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
227512432 ATAGTGAATC
*
227512442 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
227512471 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
227512499 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
227512529 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227512543 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:227519569 original size:29 final size:29
Alignment explanation
Indices: 227519530--227519608 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
227519520 CTTAATAATC
*
227519530 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
227519560 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
227519589 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
227519609 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:227523601 original size:28 final size:28
Alignment explanation
Indices: 227523522--227523587 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 28
227523512 AGTGAATCCG
*
227523522 CACTTAGTGCTATATGTATTC-AACTCGCA
1 CACTTAGTGCTATA--TAATCAAACTCGCA
227523551 CACTTAGTGCTATATAATCAAACTCGCA
1 CACTTAGTGCTATATAATCAAACTCGCA
227523579 CACTTAGTG
1 CACTTAGTG
227523588 TGTTCAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 4 0.11
28 17 0.49
29 14 0.40
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (28 bp):
CACTTAGTGCTATATAATCAAACTCGCA
Found at i:227526611 original size:29 final size:29
Alignment explanation
Indices: 227526550--227526645 Score: 153
Period size: 29 Copynumber: 3.4 Consensus size: 29
227526540 AATGAGATTG
*
227526550 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTACGAGTTTGAATTGTATA
227526578 GCACTAAGTGTACGAGTTTGAATTGTATA
1 GCACTAAGTGTACGAGTTTGAATTGTATA
227526607 GCACTAAGTGTACGAGTTTGAATAT-TA-A
1 GCACTAAGTGTACGAGTTTGAAT-TGTATA
227526635 GCACTAAGTGT
1 GCACTAAGTGT
227526646 GCGGACTTAC
Statistics
Matches: 65, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
28 30 0.46
29 34 0.52
30 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTACGAGTTTGAATTGTATA
Found at i:227531767 original size:27 final size:28
Alignment explanation
Indices: 227531737--227531806 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
227531727 ATAATAAGTC
*
227531737 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
227531764 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
227531792 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
227531807 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:227539690 original size:27 final size:28
Alignment explanation
Indices: 227539660--227539729 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
227539650 ATAATAAGTC
*
227539660 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
227539687 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
227539715 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
227539730 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:227545438 original size:29 final size:29
Alignment explanation
Indices: 227545377--227545475 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
227545367 AATGAGATTG
227545377 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
227545405 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
227545434 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
227545462 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
227545476 GACTTACTGT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:227548462 original size:79 final size:79
Alignment explanation
Indices: 227548342--227548490 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 79
227548332 ATAATTATCG
*
227548342 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTACT-GAATTACTGTTTTACCCTT
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTA-TAGAATTACTGTTTTACCCTC
227548406 GATTTAGAATTACTA
65 GATTTAGAATTACTA
* * * ** *
227548421 TTTTACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCG
1 TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCG
227548486 ATTTA
66 ATTTA
227548491 CAAAATTACT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
78 1 0.02
79 61 0.98
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (79 bp):
TTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCG
ATTTAGAATTACTA
Found at i:227548500 original size:27 final size:27
Alignment explanation
Indices: 227548263--227548500 Score: 227
Period size: 27 Copynumber: 8.9 Consensus size: 27
227548253 ATTACCAAAG
* * *
227548263 TACCCCCGATTTACAAAAATTACCGTTT
1 TACCCTCGATTTAC-AGAATTACTGTTT
* * *
227548291 TACCC-CTAATTTACATAATTATCCG-TT
1 TACCCTC-GATTTACAGAATTA-CTGTTT
*
227548318 TACCC-CTGATTTACATAATTA-TCGTTT
1 TACCCTC-GATTTACAGAATTACT-GTTT
* **
227548345 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
227548372 TACCCTCGATTTACTGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
227548399 TACCCTTGATTT--AGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
227548424 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
227548451 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
227548478 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
227548501 AAAATACCCT
Statistics
Matches: 183, Mismatches: 19, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
25 23 0.13
26 1 0.01
27 144 0.79
28 15 0.08
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:227548508 original size:27 final size:27
Alignment explanation
Indices: 227548478--227548639 Score: 79
Period size: 27 Copynumber: 6.1 Consensus size: 27
227548468 ATTACTGTTT
227548478 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * *** **
227548505 TACCCTTGGTTTGTGAAATTAC-CGAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
227548531 -ACCCTCAATTGT--AAAATTACCAAAA
1 TACCCTCGATT-TACAAAATTACTAAAA
* *
227548556 TACCC-CTATTTACAAAGTTAC-AGAAA
1 TACCCTCGATTTACAAAATTACTA-AAA
* *
227548582 TACCCTTGACTTT-CTAAAATTA-TAGAA
1 TACCCTCGA-TTTAC-AAAATTACTAAAA
* * * *
227548609 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
227548636 TACC
1 TACC
227548640 TTTGGTTTGT
Statistics
Matches: 100, Mismatches: 23, Indels: 24
0.68 0.16 0.16
Matches are distributed among these distances:
24 8 0.08
25 14 0.14
26 32 0.32
27 36 0.36
28 10 0.10
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:227548509 original size:106 final size:106
Alignment explanation
Indices: 227548316--227548512 Score: 252
Period size: 106 Copynumber: 1.9 Consensus size: 106
227548306 TAATTATCCG
*
227548316 TTTACCCCTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGA
1 TTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGA
** ****
227548381 TTTACTGAATTACTGTTTTACCCTTGATTTAGAATTACTAT
66 TTTACAAAATTACTAAAATACCCTTGATTTAGAATTACTAT
* * * * * **
227548422 TTTACCCTTGATTTATAGAATTA-CTGTTTTACCCTTGATTTATAGAATTACTGTTTTACCCTCG
1 TTTACCCCTGATTTACAGAATTATC-GTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCG
227548486 ATTTACAAAATTACTAAAATACCCTTG
65 ATTTACAAAATTACTAAAATACCCTTG
227548513 GTTTGTGAAA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
105 1 0.01
106 75 0.99
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (106 bp):
TTTACCCCTGATTTACAGAATTATCGTTTTACCCTCGACTTACAGAATTACCATTTTACCCTCGA
TTTACAAAATTACTAAAATACCCTTGATTTAGAATTACTAT
Found at i:227549937 original size:25 final size:25
Alignment explanation
Indices: 227549908--227549955 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
227549898 TTATAATATG
* * *
227549908 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
227549933 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
227549956 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:227550036 original size:11 final size:11
Alignment explanation
Indices: 227550003--227550056 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
227549993 TATGGTATGT
227550003 ATGATATGCAC
1 ATGATATGCAC
*
227550014 ATGA-ATG--T
1 ATGATATGCAC
227550022 ATGATATGCAC
1 ATGATATGCAC
*
227550033 ATGATATG--T
1 ATGATATGCAC
227550042 ATGATATGCAC
1 ATGATATGCAC
227550053 ATGA
1 ATGA
227550057 GTAATCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:227550043 original size:20 final size:20
Alignment explanation
Indices: 227549998--227550056 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
227549988 ATAAATATGG
227549998 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
227550018 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
227550037 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
227550057 GTAATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:227550132 original size:24 final size:24
Alignment explanation
Indices: 227550105--227550270 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
227550095 GAGGAAGTGA
227550105 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
227550129 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
227550153 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
227550177 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
227550200 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
227550223 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
227550247 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
227550271 ATGATAAAGC
Statistics
Matches: 134, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
22 22 0.16
24 101 0.75
25 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:227550228 original size:70 final size:70
Alignment explanation
Indices: 227550105--227550271 Score: 246
Period size: 70 Copynumber: 2.3 Consensus size: 70
227550095 GAGGAAGTGA
227550105 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT--AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
227550170 AGTTATC
64 AGTTATC
** *
227550177 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAG
1 AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
*
227550242 TTATT
66 TTATC
*
227550247 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
227550272 TGATAAAGCA
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
70 53 0.60
71 12 0.14
72 23 0.26
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
AAAAGGGCTTATGCCCCAGTTATAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAG
TTATC
Found at i:227550496 original size:31 final size:31
Alignment explanation
Indices: 227550461--227550524 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
227550451 CGTTTACAGT
227550461 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
227550492 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
227550523 AA
1 AA
227550525 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:227553252 original size:28 final size:27
Alignment explanation
Indices: 227553221--227553301 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
227553211 TTAGAATACT
227553221 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTTA-TAAAATTACCGAAATACCC
* *
227553249 TTAGTTTATAAAAATACTGAAATACCC
1 TTAGTTTATAAAATTACCGAAATACCC
* * *
227553276 -TCGATTTGTAAATTTACCGAAATACC
1 TTAG-TTTATAAAATTACCGAAATACC
227553302 TTCGACTTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.04
27 35 0.78
28 8 0.18
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTAGTTTATAAAATTACCGAAATACCC
Found at i:227553306 original size:27 final size:27
Alignment explanation
Indices: 227553230--227553347 Score: 98
Period size: 27 Copynumber: 4.4 Consensus size: 27
227553220 TTTAGTTTAC
* *
227553230 TAAAATTACCGAAATACCCTTAG-TTTA
1 TAAAATTACCGAAATA-CCTTCGATTTG
* * *
227553257 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTCGATTTG
* *
227553284 TAAATTTACCGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTCGATTTG
* * *
227553311 T-AAATTACC-AAAGTACCCTCAATTTA
1 TAAAATTACCGAAA-TACCTTCGATTTG
*
227553337 CAAAATTACCG
1 TAAAATTACCG
227553348 TTTTACCCTA
Statistics
Matches: 71, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
25 3 0.04
26 20 0.28
27 48 0.68
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTCGATTTG
Found at i:227553397 original size:80 final size:80
Alignment explanation
Indices: 227553312--227553570 Score: 236
Period size: 80 Copynumber: 3.2 Consensus size: 80
227553302 TTCGACTTGT
* * * *
227553312 AAATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTAATTTACATAATTA-TCGTT
1 AAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTGATTTACATAATTACT-GTT
*
227553376 TTACCCCTGATTTACA
65 TTACCCTTGATTTACA
* * *** * *
227553392 TAATTATCGTTTTATCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTAC-TGAATTACTGT
1 AAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCT-GATTTACAT-AATTACTGT
*
227553456 TTTA-CCTTGATTTATA
64 TTTACCCTTGATTTACA
* * ** * * * * * *
227553472 GAATTACTATTTTACCCTTGATTAATAGAATTACTGTTTTACCCTTGATTTATAGAATTACTGTT
1 AAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCC-TGATTTACATAATTACTGTT
227553537 TTACCCTTGATTTACA
65 TTACCCTTGATTTACA
* *
227553553 AAATTACTAAAATACCCT
1 AAATTACCAAATTACCCT
227553571 TAGTTTGTGA
Statistics
Matches: 143, Mismatches: 30, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
80 99 0.69
81 43 0.30
82 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (80 bp):
AAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCTGATTTACATAATTACTGTTT
TACCCTTGATTTACA
Found at i:227553560 original size:27 final size:27
Alignment explanation
Indices: 227553332--227553560 Score: 250
Period size: 27 Copynumber: 8.6 Consensus size: 27
227553322 AGTACCCTCA
* * *
227553332 ATTTACAAAATTACCGTTTTACCC-TA
1 ATTTACAGAATTACTGTTTTACCCTTG
* *
227553358 ATTTACATAATTA-TCGTTTTACCCCTG
1 ATTTACAGAATTACT-GTTTTACCCTTG
* * *
227553385 ATTTACATAATTA-TCGTTTTATCCTCG
1 ATTTACAGAATTACT-GTTTTACCCTTG
* * *
227553412 ACTTACAGAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTTG
*
227553439 ATTTACTGAATTACTGTTTTA-CCTTG
1 ATTTACAGAATTACTGTTTTACCCTTG
* *
227553465 ATTTATAGAATTACTATTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTTG
* *
227553492 ATTAATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTTG
*
227553519 ATTTATAGAATTACTGTTTTACCCTTG
1 ATTTACAGAATTACTGTTTTACCCTTG
*
227553546 ATTTACAAAATTACT
1 ATTTACAGAATTACT
227553561 AAAATACCCT
Statistics
Matches: 177, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 43 0.24
27 134 0.76
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTTG
Found at i:227553560 original size:107 final size:107
Alignment explanation
Indices: 227553324--227553560 Score: 271
Period size: 107 Copynumber: 2.2 Consensus size: 107
227553314 ATTACCAAAG
* * * * *
227553324 TACCCTCAATTTACAAAATTACCGTTTTACCCTAATTTACATAATTATCGTTTTACCCCTGATTT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTAATTTACAGAATTATCATTTTACCCCTGATTA
* *
227553389 ACATAATTATCGTTTTATCCTCGACTTACAGAATTACCGTTT
66 ACAGAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
** * * * *
227553431 TACCCTCGATTTACTGAATTACTGTTTTACCTTGATTTATAGAATTA-CTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTACTGTTTTACCCTAATTTACAGAATTATC-ATTTTACCCCTGATT
* * * * *
227553495 AATAGAATTA-CTGTTTTACCCTTGATTTATAGAATTACTGTTT
65 AACAGAATTATC-GTTTTACCCTCGACTTACAGAATTACCGTTT
*
227553538 TACCCTTGATTTACAAAATTACT
1 TACCCTCGATTTACAAAATTACT
227553561 AAAATACCCT
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
106 2 0.02
107 105 0.98
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (107 bp):
TACCCTCGATTTACAAAATTACTGTTTTACCCTAATTTACAGAATTATCATTTTACCCCTGATTA
ACAGAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
Found at i:227553568 original size:27 final size:27
Alignment explanation
Indices: 227553511--227553703 Score: 92
Period size: 27 Copynumber: 7.1 Consensus size: 27
227553501 ATTACTGTTT
* * ****
227553511 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
227553538 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
*** **
227553565 TACCCTT-AGTTTGTGAAATTACCGAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
** ** *
227553592 -ACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
227553618 TACCC-TAATTTACAAAGTTA-TAGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
*
227553644 TACCCTTGACTTT-CTAAAAATTA-TAGGAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
227553673 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
227553700 TACC
1 TACC
227553704 TTTGGTTTGT
Statistics
Matches: 130, Mismatches: 26, Indels: 20
0.74 0.15 0.11
Matches are distributed among these distances:
25 1 0.01
26 41 0.32
27 62 0.48
28 7 0.05
29 19 0.15
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:227553603 original size:26 final size:26
Alignment explanation
Indices: 227553552--227553628 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 26
227553542 CTTGATTTAC
* *
227553552 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCC-TAATTTGT
* *
227553579 GAAATTACCGAAA-ACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
227553605 AAAATTACCAAAATACCCTAATTT
1 AAAATTACCAAAATACCCTAATTT
227553629 ACAAAGTTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
25 1 0.02
26 26 0.62
27 15 0.36
ACGTcount: A:0.43, C:0.19, G:0.06, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAATTTGT
Found at i:227553829 original size:27 final size:27
Alignment explanation
Indices: 227553765--227553829 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
227553755 ACCCCTAAAA
* *
227553765 GGTAAAAAGATCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
227553792 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
227553819 GGTAAAATGAC
1 GGTAAAATGAC
227553830 GAATATACCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:227553837 original size:27 final size:27
Alignment explanation
Indices: 227553783--227553839 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
227553773 GATCGTAAAG
* *
227553783 CCCCTGTAGGGTAAAGTGACCGTAATA
1 CCCCTGTAGGGTAAAATGACCGAAATA
*
227553810 CCCCTGTATGGTAAAATGA-CGAATATA
1 CCCCTGTAGGGTAAAATGACCGAA-ATA
227553837 CCC
1 CCC
227553840 TTATGTTCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (27 bp):
CCCCTGTAGGGTAAAATGACCGAAATA
Found at i:227555091 original size:20 final size:20
Alignment explanation
Indices: 227555066--227555124 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
227555056 TAAATATGGT
227555066 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
227555086 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
227555106 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
227555125 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:227555202 original size:24 final size:24
Alignment explanation
Indices: 227555175--227555315 Score: 207
Period size: 24 Copynumber: 6.0 Consensus size: 24
227555165 GAGGAAGTGA
227555175 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
227555199 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
227555223 -AAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
227555245 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
227555269 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
227555293 AAAAGGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
227555316 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
23 48 0.44
24 61 0.56
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:227555274 original size:47 final size:47
Alignment explanation
Indices: 227555176--227555315 Score: 212
Period size: 47 Copynumber: 3.0 Consensus size: 47
227555166 AGGAAGTGAA
227555176 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-TC
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTC
*
227555223 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTC
* *
227555270 AAAGGGCTTTTGCCCCAGTTATTAAAAGGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCC-CCAGTTAT
227555316 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
46 22 0.25
47 48 0.55
48 17 0.20
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTC
Found at i:227555539 original size:30 final size:31
Alignment explanation
Indices: 227555505--227555582 Score: 131
Period size: 30 Copynumber: 2.5 Consensus size: 31
227555495 CCGTTTACAG
227555505 TAATATGAAATATGAAAAGGCTTCGG-CCAA
1 TAATATGAAATATGAAAAGGCTTCGGCCCAA
*
227555535 TAATATGAAATATGAAAAGGCTTCGGCCCAG
1 TAATATGAAATATGAAAAGGCTTCGGCCCAA
*
227555566 TATTATGAAATATGAAA
1 TAATATGAAATATGAAA
227555583 TATGAAAAGG
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 26 0.58
31 19 0.42
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.26
Consensus pattern (31 bp):
TAATATGAAATATGAAAAGGCTTCGGCCCAA
Found at i:227557665 original size:40 final size:40
Alignment explanation
Indices: 227557620--227557786 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
227557610 CGGAATATAA
227557620 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
227557660 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
227557700 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
227557740 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
227557779 CCGGATAT
1 CCGGATAT
227557787 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:227565634 original size:40 final size:40
Alignment explanation
Indices: 227565589--227565755 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
227565579 CGGAATATAA
227565589 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
227565629 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
227565669 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
227565709 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
227565748 CCGGATAT
1 CCGGATAT
227565756 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:227569097 original size:17 final size:19
Alignment explanation
Indices: 227569075--227569117 Score: 72
Period size: 17 Copynumber: 2.4 Consensus size: 19
227569065 AAACCCTAAT
227569075 TTTCCCTTTTC-TT-TTTC
1 TTTCCCTTTTCTTTCTTTC
227569092 TTTCCCTTTTCTTTCTTTC
1 TTTCCCTTTTCTTTCTTTC
227569111 TTTCCCT
1 TTTCCCT
227569118 GCTCATTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 11 0.46
18 2 0.08
19 11 0.46
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTCCCTTTTCTTTCTTTC
Found at i:227569429 original size:19 final size:20
Alignment explanation
Indices: 227569395--227569432 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
227569385 AGTCCTTACA
227569395 CTAAATTAACCTTAATTAAG
1 CTAAATTAACCTTAATTAAG
*
227569415 CTAAATTTA-CTTAATTAA
1 CTAAATTAACCTTAATTAA
227569433 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
CTAAATTAACCTTAATTAAG
Found at i:227573155 original size:28 final size:28
Alignment explanation
Indices: 227573086--227573185 Score: 94
Period size: 28 Copynumber: 3.5 Consensus size: 28
227573076 GACAAGATTG
* * * *
227573086 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
*
227573116 GCACTAAGTGTGCGAGTTTGATTCTATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* **
227573144 GCACTAAGTGTGCGAG-CTGAAAAATATA
1 GCACTAAGTGTGCGAGTTTG-ATTATATA
227573172 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
227573186 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
27 2 0.03
28 41 0.67
30 18 0.30
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:227580990 original size:30 final size:30
Alignment explanation
Indices: 227580954--227581054 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
227580944 GACAAGATTG
* * *
227580954 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
227580984 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
227581012 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
227581041 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
227581055 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:227581066 original size:29 final size:28
Alignment explanation
Indices: 227580983--227581058 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
227580973 AAAATTGTAC
* *
227580983 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
227581011 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
227581040 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
227581059 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:227583866 original size:40 final size:40
Alignment explanation
Indices: 227583821--227583950 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
227583811 CGGAATACAA
227583821 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
227583861 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
227583901 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
227583941 CCGGATATAA
1 CCGGATATAA
227583951 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:227583965 original size:40 final size:40
Alignment explanation
Indices: 227583821--227583984 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
227583811 CGGAATACAA
* **
227583821 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
227583861 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
227583901 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
227583941 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
227583981 CCGG
1 CCGG
227583985 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:227591915 original size:40 final size:40
Alignment explanation
Indices: 227591870--227591999 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
227591860 CGGAATACAA
227591870 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
227591910 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
227591950 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
227591990 CCGGATATAA
1 CCGGATATAA
227592000 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:227592014 original size:40 final size:40
Alignment explanation
Indices: 227591870--227592033 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
227591860 CGGAATACAA
* **
227591870 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
227591910 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
227591950 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
227591990 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
227592030 CCGG
1 CCGG
227592034 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:227593691 original size:12 final size:12
Alignment explanation
Indices: 227593674--227593698 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
227593664 AATTTTTAAT
227593674 TATTTTTATGCC
1 TATTTTTATGCC
227593686 TATTTTTATGCC
1 TATTTTTATGCC
227593698 T
1 T
227593699 CGGTTTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (12 bp):
TATTTTTATGCC
Found at i:227596663 original size:28 final size:28
Alignment explanation
Indices: 227596631--227596729 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
227596621 GCAATAAGCC
*
227596631 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
227596659 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
227596687 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
227596716 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227596730 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:227604340 original size:28 final size:28
Alignment explanation
Indices: 227604308--227604406 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
227604298 GCAATAAGCC
*
227604308 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
227604336 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
227604364 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
227604393 CGCACACTTAGTGC
1 CGCACACTTAGTGC
227604407 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:227606094 original size:39 final size:39
Alignment explanation
Indices: 227605960--227606143 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
227605950 TCGAATGATG
* *
227605960 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
227606000 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
* *
227606040 TCCGGGCTAAGCCCGAAGGCA-TGGTGCGAGTTATTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
227606078 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
227606119 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
227606144 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 23 0.19
39 19 0.16
40 70 0.58
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:227606095 original size:78 final size:80
Alignment explanation
Indices: 227605960--227606137 Score: 220
Period size: 78 Copynumber: 2.2 Consensus size: 80
227605950 TCGAATGATG
* *
227605960 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
227606025 GTGCGAGTTACTA-A
66 GTGCGAGTTACTATA
* * * * **
227606039 TTCCGGGCTAAG-CCCGAAGGCATGGTGC-GAGTTATTAAATCTGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
227606101 TTGTGCGAGTTACTATA
64 TTGTGCGAGTTACTATA
* *
227606118 ACCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
227606138 TATTTGAACG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 50 0.59
79 23 0.27
80 11 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:227614165 original size:40 final size:40
Alignment explanation
Indices: 227614108--227614293 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
227614098 TCGAATGATG
* * * *
227614108 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
227614148 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
227614188 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
227614228 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
227614269 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
227614294 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:227614300 original size:80 final size:79
Alignment explanation
Indices: 227614161--227614316 Score: 192
Period size: 80 Copynumber: 2.0 Consensus size: 79
227614151 GGACTAAGAT
* **
227614161 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
227614225 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
227614241 CCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGTAGC
1 CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
*
227614304 TATATCCGGTTAA
64 TAAATCCGGTTAA
227614317 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
79 9 0.14
80 55 0.83
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:227615829 original size:23 final size:24
Alignment explanation
Indices: 227615795--227615870 Score: 118
Period size: 24 Copynumber: 3.2 Consensus size: 24
227615785 CCAACACTGT
*
227615795 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
227615819 -CTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
227615842 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
227615866 TCTCC
1 TCTCC
227615871 TGACAGACTT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
23 22 0.47
24 25 0.53
ACGTcount: A:0.24, C:0.42, G:0.03, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:227620193 original size:28 final size:28
Alignment explanation
Indices: 227620155--227620261 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
227620145 GAATCATTCG
* *
227620155 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
227620183 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
227620211 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
227620239 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
227620262 ATTTGATTGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:227624107 original size:31 final size:29
Alignment explanation
Indices: 227624012--227624143 Score: 147
Period size: 29 Copynumber: 4.6 Consensus size: 29
227624002 AATTTAAGCC
* *** * *
227624012 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * *
227624041 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* **
227624070 TGCACTTTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
227624099 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
227624128 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
227624144 ATCTCGTCAC
Statistics
Matches: 85, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:227631960 original size:29 final size:29
Alignment explanation
Indices: 227631927--227632027 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
227631917 CCTTCGAGCT
** * *
227631927 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
227631956 TG--CACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
227631983 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
227632012 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
227632028 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
27 22 0.34
29 42 0.66
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:227636234 original size:28 final size:28
Alignment explanation
Indices: 227636200--227636353 Score: 139
Period size: 28 Copynumber: 5.5 Consensus size: 28
227636190 AACCGATCTT
* *
227636200 GCACACACAGTGCTTGGTTACGGAACTC
1 GCACACACAGTGCTCGATTACGGAACTC
* ** * *
227636228 GCACACACAGTGCCTCAACAACCGATCTC
1 GCACACACAGTG-CTCGATTACGGAACTC
* *
227636257 GCACACACAGTGCTCGGTTCCGGAACTC
1 GCACACACAGTGCTCGATTACGGAACTC
* ** * *
227636285 GCACACACAGTGC-CTAACAACCGATCTC
1 GCACACACAGTGCTC-GATTACGGAACTC
227636313 GCACACACAGTGCTCGATTACGGAACTC
1 GCACACACAGTGCTCGATTACGGAACTC
**
227636341 ATACACACAGTGC
1 GCACACACAGTGC
227636354 CTATGTTCAC
Statistics
Matches: 95, Mismatches: 28, Indels: 6
0.74 0.22 0.05
Matches are distributed among these distances:
27 1 0.01
28 72 0.76
29 22 0.23
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (28 bp):
GCACACACAGTGCTCGATTACGGAACTC
Found at i:227636240 original size:57 final size:57
Alignment explanation
Indices: 227636170--227636354 Score: 273
Period size: 57 Copynumber: 3.2 Consensus size: 57
227636160 GATCTCATTT
* *
227636170 CACACACTTAGTGCCCCAACAACCGATCTTGCACACACAGTGCTTGGTTACGGAACTCG
1 CACACAC--AGTGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* *
227636229 CACACACAGTGCCTCAACAACCGATCTCGCACACACAGTGCTCGGTTCCGGAACTCG
1 CACACACAGTGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
* * *
227636286 CACACACAGTG-CCTAACAACCGATCTCGCACACACAGTGCTCGATTACGGAACTCA
1 CACACACAGTGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
*
227636342 TACACACAGTGCC
1 CACACACAGTGCC
227636355 TATGTTCACT
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
56 50 0.43
57 58 0.50
59 7 0.06
ACGTcount: A:0.29, C:0.36, G:0.18, T:0.17
Consensus pattern (57 bp):
CACACACAGTGCCCCAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCG
Found at i:227638371 original size:28 final size:28
Alignment explanation
Indices: 227638331--227638437 Score: 160
Period size: 28 Copynumber: 3.8 Consensus size: 28
227638321 GAATCATTCG
* * *
227638331 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
*
227638359 ATATCTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
227638387 ATATTTCGTACACTAAGTGCCATTCTCA
1 ATATTTCGTACACTAAGTGCCATTCTCA
* *
227638415 ATATTTCGTACACTTAGTACCAT
1 ATATTTCGTACACTAAGTGCCAT
227638438 ATTTGATTGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (28 bp):
ATATTTCGTACACTAAGTGCCATTCTCA
Found at i:227643078 original size:39 final size:40
Alignment explanation
Indices: 227643035--227643172 Score: 147
Period size: 40 Copynumber: 3.5 Consensus size: 40
227643025 GGACTAGGAT
*
227643035 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
* * *
227643074 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
*** **
227643113 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGCTAAGTC
* *
227643153 CCGAAGGCATTTGAGCGAGT
1 CCGAAGGCATTCGTGCGAGT
227643173 CGTTATATCC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
38 22 0.26
39 23 0.27
40 37 0.44
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGTC
Found at i:227643117 original size:78 final size:79
Alignment explanation
Indices: 227642983--227643163 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 79
227642973 TCGAATGATG
* * * *
227642983 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTTATCCGGACTAGGATCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAACCCGGACTAAGATCCGAAGGCATTCG
227643048 TGCGAGTTAATAAA
66 TGCGAGTTAATAAA
* **
227643062 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACT-AACCCGGACTAAGAT-CCGAAGGCATT
***
227643124 CGTGCGAGTCGCTATAA
64 CGTGCGAGTTAATA-AA
**
227643141 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
227643164 TGAGCGAGTC
Statistics
Matches: 86, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
77 8 0.09
78 53 0.62
79 25 0.29
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAACCCGGACTAAGATCCGAAGGCATTCG
TGCGAGTTAATAAA
Found at i:227651696 original size:27 final size:28
Alignment explanation
Indices: 227651635--227651704 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
227651625 AAATTTGTAC
* *
227651635 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
227651663 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
227651690 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
227651705 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:227651743 original size:55 final size:55
Alignment explanation
Indices: 227651636--227651744 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
227651626 AATTTGTACA
* * * * *
227651636 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
227651691 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
227651745 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:227659539 original size:27 final size:28
Alignment explanation
Indices: 227659478--227659547 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
227659468 AAATTTGTAC
* *
227659478 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
227659506 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
*
227659533 GGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
227659548 TGATCGAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:227659586 original size:55 final size:55
Alignment explanation
Indices: 227659479--227659587 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
227659469 AATTTGTACA
* * * * *
227659479 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
227659534 GCACTAAGTGTGCGTGATCGAGTAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAGTATAT-AGCACTAAGTGTGCGAACTCAATATAT
227659588 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAGTATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:227662214 original size:39 final size:40
Alignment explanation
Indices: 227662115--227662304 Score: 129
Period size: 40 Copynumber: 4.8 Consensus size: 40
227662105 CGAATGATGT
* * * * * *
227662115 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTAATAAAC
* * * *
227662155 CCGGACTAGGAT-CCGAAGGCATTCGTACGAGTTAATAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTAATAAAC
* * *
227662195 CCGGGCTAAG-CCCTAAGGCATT-GTGCAAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAAC
* ***
227662233 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATA-AAC
** * *
227662273 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
227662305 CGTTATATCC
Statistics
Matches: 119, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
38 21 0.18
39 21 0.18
40 69 0.58
41 8 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTAATAAAC
Found at i:227662255 original size:78 final size:80
Alignment explanation
Indices: 227662114--227662295 Score: 192
Period size: 78 Copynumber: 2.3 Consensus size: 80
227662104 TCGAATGATG
* * * *
227662114 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
227662179 GTACGAGTTAATAAA
66 GTACGAGTTAATAAA
* * **
227662194 TCCGGGCTAAG-CCCTAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
* ***
227662256 CGTGCGAGTCGCTATAA
65 CGTACGAGTTAATA-AA
**
227662273 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
227662296 TGAGCGAGTC
Statistics
Matches: 84, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.54
79 27 0.32
80 11 0.13
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTACGAGTTAATAAA
Found at i:227665709 original size:26 final size:25
Alignment explanation
Indices: 227665680--227665747 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
227665670 AAACGAAACA
* *
227665680 AAATGATATATAAAACAATTCGAAGT
1 AAATAATATATAAAA-AATTCGAAAT
* *
227665706 AAATAATATATAAAAAGTTTGAAAT
1 AAATAATATATAAAAAATTCGAAAT
*
227665731 AAATAATATATGAAAAA
1 AAATAATATATAAAAAA
227665748 GTTTTTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 22 0.61
26 14 0.39
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (25 bp):
AAATAATATATAAAAAATTCGAAAT
Found at i:227665739 original size:25 final size:25
Alignment explanation
Indices: 227665680--227665751 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 25
227665670 AAACGAAACA
* * * *
227665680 AAATGATATATAAAACAATTCGAAGT
1 AAATAATATATAAAA-AGTTTGAAAT
227665706 AAATAATATATAAAAAGTTTGAAAT
1 AAATAATATATAAAAAGTTTGAAAT
227665731 AAATAATATATGAAAAAGTTT
1 AAATAATATAT-AAAAAGTTT
227665752 TTTTTAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 18 0.44
26 23 0.56
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.31
Consensus pattern (25 bp):
AAATAATATATAAAAAGTTTGAAAT
Found at i:227667107 original size:25 final size:27
Alignment explanation
Indices: 227667070--227667122 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
227667060 TCAAACATGC
227667070 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
227667096 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
227667122 A
1 A
227667123 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:227668640 original size:26 final size:26
Alignment explanation
Indices: 227668604--227668687 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
227668594 CATGAAATTC
227668604 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
227668630 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227668656 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227668682 TTATCA
1 TTATCA
227668688 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:227671341 original size:3 final size:3
Alignment explanation
Indices: 227671333--227671397 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
227671323 AGATATTAAC
227671333 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
227671381 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
227671398 TATCAACTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:227671630 original size:17 final size:16
Alignment explanation
Indices: 227671590--227671631 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
227671580 AAAAGAAACG
*
227671590 AAATAAAAAGAAAGAA
1 AAATGAAAAGAAAGAA
227671606 AGAA-GAAAAGAAAAGAA
1 A-AATGAAAAG-AAAGAA
227671623 AAATGAAAA
1 AAATGAAAA
227671632 ATTAGGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (16 bp):
AAATGAAAAGAAAGAA
Found at i:227674342 original size:26 final size:26
Alignment explanation
Indices: 227674306--227674439 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
227674296 CATGAAATTC
227674306 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
227674332 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227674358 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227674384 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227674408 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227674434 TTATCA
1 TTATCA
227674440 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:227674430 original size:50 final size:52
Alignment explanation
Indices: 227674306--227674439 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
227674296 CATGAAATTC
* *
227674306 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227674358 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227674408 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
227674440 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:227680175 original size:26 final size:26
Alignment explanation
Indices: 227680139--227680272 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
227680129 CATGAAATTC
227680139 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
227680165 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227680191 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227680217 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227680241 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227680267 TTATCA
1 TTATCA
227680273 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:227680263 original size:50 final size:52
Alignment explanation
Indices: 227680139--227680272 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
227680129 CATGAAATTC
* *
227680139 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227680191 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227680241 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
227680273 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:227686008 original size:26 final size:26
Alignment explanation
Indices: 227685972--227686105 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
227685962 ACATGAATTC
227685972 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
227685998 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227686024 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227686050 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
227686074 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
227686100 TTATCA
1 TTATCA
227686106 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:227686096 original size:50 final size:52
Alignment explanation
Indices: 227685972--227686105 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
227685962 ACATGAATTC
* *
227685972 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227686024 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
227686074 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
227686106 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:227686588 original size:22 final size:22
Alignment explanation
Indices: 227686563--227686605 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
227686553 AACTAATAAT
227686563 GAAATTATGAGTTT-AATTGATA
1 GAAATTATGA-TTTGAATTGATA
*
227686585 GAAATTTTGATTTGAATTGAT
1 GAAATTATGATTTGAATTGAT
227686606 TAAAGGATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (22 bp):
GAAATTATGATTTGAATTGATA
Found at i:227690259 original size:40 final size:39
Alignment explanation
Indices: 227690078--227690229 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
227690068 AATGTTCGAG
227690078 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
227690117 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
227690156 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
227690195 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
227690230 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:227698190 original size:39 final size:40
Alignment explanation
Indices: 227698132--227698232 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
227698122 AAATTGAATG
* *
227698132 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
227698171 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
227698211 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
227698233 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:227698225 original size:40 final size:40
Alignment explanation
Indices: 227698132--227698282 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
227698122 AAATTGAATG
* * * * *
227698132 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
227698171 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
227698211 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
227698251 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
227698283 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:227698297 original size:40 final size:38
Alignment explanation
Indices: 227698128--227698299 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
227698118 TGAGAAATTG
* *
227698128 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
227698167 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
227698204 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
227698244 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
227698284 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
227698300 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Done.