Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 727 of 770
Found at i:230034239 original size:40 final size:40
Alignment explanation
Indices: 230034173--230034339 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
230034163 AAATTGAATG
* * *
230034173 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
230034212 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
230034252 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
230034292 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
230034332 ATATCCGG
1 ATATCCGG
230034340 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:230035594 original size:13 final size:13
Alignment explanation
Indices: 230035576--230035602 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
230035566 ACAGTGACGT
230035576 TTTCCAGCCTGAC
1 TTTCCAGCCTGAC
230035589 TTTCCAGCCTGAC
1 TTTCCAGCCTGAC
230035602 T
1 T
230035603 GGAAATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (13 bp):
TTTCCAGCCTGAC
Found at i:230042223 original size:40 final size:39
Alignment explanation
Indices: 230042157--230042322 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
230042147 AAATTGAATG
* * *
230042157 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
230042196 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
230042235 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
230042275 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
230042315 ATATCCGG
1 ATATCCGG
230042323 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:230043735 original size:40 final size:40
Alignment explanation
Indices: 230043680--230043796 Score: 166
Period size: 40 Copynumber: 3.0 Consensus size: 40
230043670 GGGTGTTACA
230043680 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* * *
230043720 TAAGTCCCGAAGGCATTGGTGTGAGTTACTATATCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
* *
230043760 TATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCCGG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
230043797 TTAAATCCTG
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.03
39 15 0.22
40 51 0.75
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
Found at i:230048619 original size:40 final size:39
Alignment explanation
Indices: 230048459--230048621 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
230048449 TGTGTATGAA
*
230048459 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
230048498 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
230048537 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
230048576 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
230048616 TGTGCG
1 TGTGCG
230048622 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:230048637 original size:40 final size:39
Alignment explanation
Indices: 230048459--230048652 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
230048449 TGTGTATGAA
* *
230048459 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
230048498 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
230048537 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
230048576 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
230048616 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
230048653 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:230053388 original size:42 final size:41
Alignment explanation
Indices: 230053290--230053483 Score: 222
Period size: 42 Copynumber: 4.8 Consensus size: 41
230053280 TGGATGATAA
* * *
230053290 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTA-GTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTAATACATT
230053331 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATTACATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAA-TACATT
230053373 CCGGGCTAAGTCCCGAAGGCATTTGTTGCGAGTT-ATACATAT
1 CCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTAATACAT-T
* * *
230053415 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATACATT
* *
230053455 CC-GGCTATGT-CCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
230053484 AGCTATATCC
Statistics
Matches: 138, Mismatches: 9, Indels: 16
0.85 0.06 0.10
Matches are distributed among these distances:
37 8 0.06
38 9 0.07
39 7 0.05
40 7 0.05
41 39 0.28
42 60 0.43
43 8 0.06
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATACATT
Found at i:230053491 original size:37 final size:39
Alignment explanation
Indices: 230053293--230053508 Score: 165
Period size: 42 Copynumber: 5.4 Consensus size: 39
230053283 ATGATAACCG
* * * *
230053293 GGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TCC
1 GGCTAAGTCCCGAAGGCA-TTGGAGCGAGTTACTA-TATCC
* * * *
230053333 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAATTACATTCC
1 -GGCTAAGTCCCGAAGGCATTGGAGCGAGTT-ACTATA-TCC
**
230053375 GGGCTAAGTCCCGAAGGCATTTGTTGCGAGTTA-TACATATCC
1 -GGCTAAGTCCCGAAGGCA-TTGGAGCGAGTTACT--ATATCC
*
230053417 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 -GGCTAAGTCCCGAAGGCATTGGAGCGAGTTACTATATCC
*
230053457 GGCTATGT-CCGAAGGCATT-GAGCGAG-TAGCTATATCC
1 GGCTAAGTCCCGAAGGCATTGGAGCGAGTTA-CTATATCC
* *
230053494 GGTTAAAT-CCGAAGG
1 GGCTAAGTCCCGAAGG
230053509 TACTGTGGCT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
36 2 0.01
37 26 0.17
38 11 0.07
39 7 0.05
40 15 0.10
41 34 0.22
42 46 0.30
43 12 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTGGAGCGAGTTACTATATCC
Found at i:230056257 original size:79 final size:81
Alignment explanation
Indices: 230056160--230056340 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 81
230056150 CTCGCTCAAT
** * * *
230056160 TGCCTTCGGGACGAAGCCCGG-TTATATTGACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGT
1 TGCCTTCGGGACTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTC-GGATCCTAACCCGGAT
*
230056223 TTAGTAACTT-GCACAAA
64 ATAGTAACTTAGCACAAA
**
230056240 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATAT
*
230056304 AGTCACTTAGCACAAA
66 AGTAACTTAGCACAAA
230056320 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
230056341 CATCATTCGA
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 30 0.34
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (81 bp):
TGCCTTCGGGACTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAACCCGGATAT
AGTAACTTAGCACAAA
Found at i:230056340 original size:40 final size:40
Alignment explanation
Indices: 230056161--230056340 Score: 152
Period size: 40 Copynumber: 4.5 Consensus size: 40
230056151 TCGCTCAATT
** * * * *
230056161 GCCTTCGGGACGAAGCCCGGTTATATTGACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
230056201 GCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC-AAA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * *
230056240 TGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAAT
1 -GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
* * * *
230056280 GCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACGAAA
230056320 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
230056341 CATCATTCGA
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
38 2 0.02
39 30 0.27
40 71 0.64
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAAA
Found at i:230057494 original size:12 final size:12
Alignment explanation
Indices: 230057477--230057508 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
230057467 TATAGCCAAA
230057477 CCTCTTCCTAAT
1 CCTCTTCCTAAT
230057489 CCTCTTCCTAAT
1 CCTCTTCCTAAT
230057501 CCTCTTCC
1 CCTCTTCC
230057509 AAACCAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.47, G:0.00, T:0.41
Consensus pattern (12 bp):
CCTCTTCCTAAT
Found at i:230058444 original size:50 final size:50
Alignment explanation
Indices: 230058367--230058608 Score: 297
Period size: 50 Copynumber: 4.8 Consensus size: 50
230058357 GTTGTGAGAA
*
230058367 CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
230058417 CGCATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCCGATAGTTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TT-AGGT
* * * *
230058468 CACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
230058518 CACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * *
230058568 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
230058609 GAGCTTCGGT
Statistics
Matches: 162, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 121 0.75
51 39 0.24
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:230058555 original size:101 final size:101
Alignment explanation
Indices: 230058371--230058555 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
230058361 TGAGAACACA
* * * * *
230058371 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
*
230058436 GCAGGCTACTATGGGTACCCGATAGTTTCAATCACG
66 GCAGGCTACTACGGGTACCCGATAGTTTCAATCACG
* *
230058472 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGTCACGTATGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
*
230058537 GCAGGCTACTACGTGTACC
66 GCAGGCTACTACGGGTACC
230058556 AGATTGATAG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
GCAGGCTACTACGGGTACCCGATAGTTTCAATCACG
Found at i:230060256 original size:40 final size:40
Alignment explanation
Indices: 230060198--230060352 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
230060188 CGTTCAAACA
* * * * *
230060198 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
230060238 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* * *
230060278 CCTTC-GGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGA-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
230060318 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
230060353 TTCATACACA
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 25 0.26
40 70 0.72
41 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:230068195 original size:79 final size:79
Alignment explanation
Indices: 230068101--230068254 Score: 211
Period size: 79 Copynumber: 1.9 Consensus size: 79
230068091 TGTTCAAACA
* * *
230068101 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
1 CCTTCGGGACATAGCCCGGATATCACAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATATCA
230068166 CAACTCGCACAATTG
65 CAACTCGCACAATTG
* * * * *
230068181 CCTTCGGG-CTTAGCCCGGATATCACAGCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CCTTCGGGACATAGCCCGGATATCACAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCAC
*
230068245 AATTCGCACA
66 AACTCGCACA
230068255 TTCATACACA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
78 25 0.38
79 32 0.49
80 8 0.12
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (79 bp):
CCTTCGGGACATAGCCCGGATATCACAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCAC
AACTCGCACAATTG
Found at i:230068212 original size:39 final size:39
Alignment explanation
Indices: 230068101--230068254 Score: 209
Period size: 39 Copynumber: 3.9 Consensus size: 39
230068091 TGTTCAAACA
* * * * * *
230068101 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
230068141 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
230068181 CCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
230068220 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
230068255 TTCATACACA
Statistics
Matches: 103, Mismatches: 11, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 62 0.60
40 41 0.40
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:230075048 original size:22 final size:21
Alignment explanation
Indices: 230075023--230075066 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
230075013 GAACTTTAAT
230075023 ATCTCTCGGTATAC-TTCATATG
1 ATCTCTC-GT-TACTTTCATATG
*
230075045 ATCTTTCGTTACTTTCATATG
1 ATCTCTCGTTACTTTCATATG
230075066 A
1 A
230075067 AAATAGACTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 11 0.55
22 6 0.30
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (21 bp):
ATCTCTCGTTACTTTCATATG
Found at i:230075988 original size:39 final size:39
Alignment explanation
Indices: 230075934--230076048 Score: 162
Period size: 39 Copynumber: 2.9 Consensus size: 39
230075924 TATGGAAACC
**
230075934 CGCACAAAGGCCTTCGGGACTTA-ACCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGACCGGATATCACAACT
*
230075973 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGACCGGATATCACAACT
*
230076012 CGCACAATTGCCTTC-GGCTTAGCCCGGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGACC-GGATATCACAA
230076049 NNNNNNNNNN
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 14 0.20
39 57 0.80
ACGTcount: A:0.26, C:0.32, G:0.21, T:0.21
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGACCGGATATCACAACT
Found at i:230078890 original size:40 final size:40
Alignment explanation
Indices: 230078824--230078990 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
230078814 AAATTGAATG
* * *
230078824 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
230078863 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
230078903 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
230078943 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
230078983 ATATCCGG
1 ATATCCGG
230078991 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:230086873 original size:40 final size:40
Alignment explanation
Indices: 230086814--230086955 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
230086804 AAATTGAATG
* * *
230086814 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
230086854 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
230086894 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
230086934 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
230086956 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:230086956 original size:40 final size:39
Alignment explanation
Indices: 230086853--230086981 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
230086843 TGCTGGAAAT
* * *
230086853 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
230086893 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
230086933 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
230086973 TATATCCGG
1 TATATCCGG
230086982 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:230095977 original size:79 final size:81
Alignment explanation
Indices: 230095868--230096050 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
230095858 TACTCGTTCA
* *
230095868 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
230095931 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
230095948 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
230096011 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
230096027 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
230096051 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:230096050 original size:40 final size:40
Alignment explanation
Indices: 230095847--230096050 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
230095837 CGGAATTTAA
** *
230095847 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
230095887 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
230095927 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
230095966 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
230096006 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
230096046 CCGGA
1 CCGGA
230096051 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:230100938 original size:40 final size:39
Alignment explanation
Indices: 230100881--230101065 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
230100871 ATTAAATGAT
* * *
230100881 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
230100921 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
230100961 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
230101001 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
230101041 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
230101066 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:230101017 original size:80 final size:80
Alignment explanation
Indices: 230100880--230101086 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
230100870 AATTAAATGA
* * ** * *
230100880 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
230100945 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
230100958 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
230101023 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
230101040 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
230101087 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:230101071 original size:40 final size:39
Alignment explanation
Indices: 230100879--230101086 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
230100869 CAATTAAATG
* * ** *
230100879 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
230100919 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
230100959 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
230100999 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
230101039 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
230101079 ATATCCGG
1 ATATCCGG
230101087 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:230108919 original size:40 final size:39
Alignment explanation
Indices: 230108862--230109046 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
230108852 ATTAAATGAT
* * *
230108862 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
230108902 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
230108942 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
230108982 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
230109022 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
230109047 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:230108998 original size:80 final size:80
Alignment explanation
Indices: 230108861--230109067 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
230108851 AATTAAATGA
* * ** * *
230108861 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
230108926 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
230108939 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
230109004 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
230109021 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
230109068 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:230109052 original size:40 final size:39
Alignment explanation
Indices: 230108860--230109067 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
230108850 CAATTAAATG
* * ** *
230108860 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
230108900 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
230108940 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
230108980 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
230109020 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
230109060 ATATCCGG
1 ATATCCGG
230109068 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:230111676 original size:28 final size:28
Alignment explanation
Indices: 230111619--230111683 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
230111609 ATGTACTAGA
***
230111619 ATACCCCTATGTATGCAAAATTTGCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
230111647 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
230111675 ATACCCCTA
1 ATACCCCTA
230111684 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:230111851 original size:27 final size:27
Alignment explanation
Indices: 230111789--230111878 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
230111779 AGGAAGCGTC
230111789 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* * *
230111817 CTGGTGGCCCTGCCACATATATTTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
230111844 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
230111873 CTGGTG
1 CTGGTG
230111879 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:230111897 original size:55 final size:56
Alignment explanation
Indices: 230111789--230111912 Score: 146
Period size: 55 Copynumber: 2.2 Consensus size: 56
230111779 AGGAAGCGTC
* *
230111789 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATTTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATTTGTAT
* * *
230111844 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTTTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATTTGTAT
**
230111900 CTGGCAGCTATGC
1 CTGGTGGCTATGC
230111913 TACATATTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
54 1 0.02
55 30 0.52
56 26 0.45
57 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATTTGTAT
Found at i:230119489 original size:28 final size:28
Alignment explanation
Indices: 230119449--230119513 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
230119439 ATGTACTAGA
*
230119449 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
230119477 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
230119505 ATACCCCTA
1 ATACCCCTA
230119514 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:230119677 original size:27 final size:27
Alignment explanation
Indices: 230119619--230119708 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
230119609 AGGAAGCGTC
230119619 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
230119647 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
230119674 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
230119703 CTGGTG
1 CTGGTG
230119709 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:230119727 original size:55 final size:56
Alignment explanation
Indices: 230119619--230119733 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
230119609 AGGAAGCGTC
* *
230119619 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
230119674 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
230119730 CTGG
1 CTGG
230119734 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:230123266 original size:40 final size:40
Alignment explanation
Indices: 230123207--230123348 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
230123197 AAATTGAATG
* * *
230123207 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
230123247 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
230123287 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
230123327 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
230123349 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:230123349 original size:40 final size:39
Alignment explanation
Indices: 230123246--230123374 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
230123236 TGCTGGAAAT
* * *
230123246 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
230123286 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
230123326 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
230123366 TATATCCGG
1 TATATCCGG
230123375 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:230131391 original size:40 final size:39
Alignment explanation
Indices: 230131264--230131393 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
230131254 ATGCTGGAAA
* * *
230131264 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-A-CAGC
* *
230131305 -TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAGTC
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAG-C
*
230131343 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGC
1 -TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACA-GC
230131384 TTATATCCGG
1 TTATATCCGG
230131394 TTATATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
40 70 0.93
41 2 0.03
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACAGC
Found at i:230139842 original size:31 final size:31
Alignment explanation
Indices: 230139791--230139870 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 31
230139781 TCAAACATAT
230139791 ACTGGGCC-ATAGCCCTTTTCATA-TTTCATAAC
1 ACTGGGCCGA-AG-CCTTTTCA-AGTTTCATAAC
**
230139823 ACTGGGCCGAAGCCTTTTCAAGTTTCATATT
1 ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
230139854 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
230139871 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 1 0.02
31 32 0.73
32 10 0.23
33 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.33
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAGTTTCATAAC
Found at i:230140113 original size:23 final size:23
Alignment explanation
Indices: 230140085--230140246 Score: 285
Period size: 23 Copynumber: 7.1 Consensus size: 23
230140075 CCTAGCCTCT
230140085 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
230140107 TTTTAATAACTGGGGCA-AAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
230140130 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
230140153 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
230140176 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
230140198 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
230140221 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
230140244 TTT
1 TTT
230140247 TGCACTTCCT
Statistics
Matches: 136, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
22 38 0.28
23 98 0.72
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:230140137 original size:45 final size:47
Alignment explanation
Indices: 230140085--230140247 Score: 291
Period size: 45 Copynumber: 3.6 Consensus size: 47
230140075 CCTAGCCTCT
230140085 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
230140130 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
230140176 TTT-ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
230140221 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
230140248 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 0, Indels: 7
0.94 0.00 0.06
Matches are distributed among these distances:
45 73 0.64
46 41 0.36
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:230140196 original size:68 final size:68
Alignment explanation
Indices: 230140085--230140246 Score: 283
Period size: 68 Copynumber: 2.4 Consensus size: 68
230140075 CCTAGCCTCT
230140085 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAA
1 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAA
230140149 GCCC
65 GCCC
*
230140153 TTTAATAACTGGGGCATAAGCCCTTT-ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAA
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCA-AAGCCCTTTAATAACTGGGGCATAA
230140217 GCCC
65 GCCC
230140221 TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTT
230140247 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
67 12 0.13
68 73 0.80
69 6 0.07
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (68 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAG
CCC
Found at i:230140320 original size:20 final size:20
Alignment explanation
Indices: 230140292--230140342 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
230140282 GCATTTATGA
*
230140292 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
230140312 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
230140332 ACATATCATGT
1 ACATATCATGT
230140343 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:230140407 original size:25 final size:25
Alignment explanation
Indices: 230140378--230140425 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
230140368 CATTATAAAC
* * *
230140378 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
230140403 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
230140426 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:230145229 original size:40 final size:40
Alignment explanation
Indices: 230145121--230145330 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
230145111 CGGGATTTAA
* * * * *
230145121 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
230145161 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
230145201 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
230145241 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
230145281 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
230145321 CCGGATATAT
1 CCGGATATAT
230145331 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:230150784 original size:40 final size:39
Alignment explanation
Indices: 230150658--230150802 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
230150648 TGCTGGAAAT
* * * * *
230150658 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
230150697 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
230150738 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
230150777 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
230150803 CTTGGTGCGG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:230150827 original size:80 final size:81
Alignment explanation
Indices: 230150659--230150847 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
230150649 GCTGGAAATT
* * * *
230150659 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
230150724 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
230150740 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
230150803 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
230150819 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
230150848 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:230158785 original size:39 final size:39
Alignment explanation
Indices: 230158703--230158849 Score: 156
Period size: 39 Copynumber: 3.8 Consensus size: 39
230158693 ATTGAATGAT
* * * *
230158703 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAAT--TAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC-G-AATGCTAA
* * * *
230158742 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATGCTAA
*
230158781 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAATTCTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAATGCTAA
*
230158820 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
230158850 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
37 2 0.02
38 3 0.03
39 84 0.92
40 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAATGCTAA
Found at i:230158832 original size:78 final size:78
Alignment explanation
Indices: 230158703--230158849 Score: 199
Period size: 78 Copynumber: 1.9 Consensus size: 78
230158693 ATTGAATGAT
* * *
230158703 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTGAAATTAAATCCGGGCTAAGACCCGAAGGCAATT
230158768 GTGCTAGTGCTAC
66 GTGCTAGTGCTAC
* * * *
230158781 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAATTCTAAATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTGAAAT-TAAATCCGGGCTAAGACCCGAAGGCAA
230158844 TTGTGC
64 TTGTGC
230158850 AAATCGTGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
77 7 0.12
78 53 0.88
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (78 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTGAAATTAAATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGCTAC
Found at i:230162732 original size:39 final size:38
Alignment explanation
Indices: 230162637--230162856 Score: 264
Period size: 39 Copynumber: 5.6 Consensus size: 38
230162627 TACTCGTTCA
*
230162637 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCAC
1 AATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCAC
*
230162676 AGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 A-ATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCAC
*
230162716 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 AATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCAC
*
230162755 AATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC
1 AATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCAC
* * * *
230162794 GAATGCCTT-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
230162834 AAAGCCTTCGGACTTAGCCCGGA
1 AATGCCTTCGGACTTAGCCCGGA
230162857 CATCATTCGA
Statistics
Matches: 166, Mismatches: 9, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
38 3 0.02
39 111 0.67
40 50 0.30
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
AATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:230162817 original size:78 final size:76
Alignment explanation
Indices: 230162637--230162856 Score: 262
Period size: 79 Copynumber: 2.8 Consensus size: 76
230162627 TACTCGTTCA
* * * *
230162637 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTC-GGACTTAACCCGGATATAGTAACTCGCACA-ATGCCTTC-GGACTTAGCCCGGAT
230162702 TTAGTAACTCGCAC
63 TTAGTAACTCGCAC
* *
230162716 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGATCTTAGTCCGGATT
1 AATGCCTTC-GGACTTAACCCGGATATAGTAACTCGCACAATGCCTTCGGA-CTTAGCCCGGATT
230162781 TAGTAACTCGCAC
64 TAGTAACTCGCAC
** * * *
230162794 GAATGCCTT-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGACTTAGCCCGGA
1 -AATGCCTTCGGA-CTTAACCCGGATATAGTAAC-TCGCACAATGCCTTCGGACTTAGCCCGGA
230162857 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 6 0.05
78 58 0.47
79 60 0.48
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (76 bp):
AATGCCTTCGGACTTAACCCGGATATAGTAACTCGCACAATGCCTTCGGACTTAGCCCGGATTTA
GTAACTCGCAC
Found at i:230169511 original size:40 final size:40
Alignment explanation
Indices: 230169439--230169645 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
230169429 CAATTGAATG
* * ** *
230169439 ATATCCGGGCTAAG-TCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
230169478 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTAATT
* **
230169518 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * * **
230169558 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
* * **
230169598 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
230169638 ATATCCGG
1 ATATCCGG
230169646 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 17 0.12
40 119 0.85
41 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAATT
Found at i:230169576 original size:80 final size:80
Alignment explanation
Indices: 230169480--230169645 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
230169470 TAGTAATTAT
* *
230169480 ATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCA
*
230169543 TTCGTGCAAGTTGTTAA
64 TTCGTGCAAGTGGTTAA
* ** *
230169560 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
* *
230169625 CGTGCATGTGGTTAT
66 CGTGCAAGTGGTTAA
230169640 ATCCGG
1 ATCCGG
230169646 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:230173642 original size:20 final size:20
Alignment explanation
Indices: 230173617--230173665 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
230173607 GGAACTAAGG
230173617 AAATTTTTCGTAAAATTTCA
1 AAATTTTTCGTAAAATTTCA
230173637 AAATTTTTCGTAAAATTTCA
1 AAATTTTTCGTAAAATTTCA
230173657 AAATTTTTC
1 AAATTTTTC
230173666 CAAGGTACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (20 bp):
AAATTTTTCGTAAAATTTCA
Found at i:230178541 original size:39 final size:39
Alignment explanation
Indices: 230178497--230178690 Score: 325
Period size: 39 Copynumber: 5.0 Consensus size: 39
230178487 ATTATATTAT
* *
230178497 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
230178536 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
230178575 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
230178614 CAGCACGAAGCATGCGGGACTTCAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
230178653 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
230178691 TCAGTGTCTT
Statistics
Matches: 145, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 145 1.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:230180289 original size:21 final size:21
Alignment explanation
Indices: 230180265--230180319 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
230180255 TTTTCTAAAC
230180265 CCACTTGACCTTAGGGTCATA
1 CCACTTGACCTTAGGGTCATA
230180286 CCACTTGACCTTAGGGTCATA
1 CCACTTGACCTTAGGGTCATA
*
230180307 CCACTTGAGCTTA
1 CCACTTGACCTTA
230180320 ATAAATCGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (21 bp):
CCACTTGACCTTAGGGTCATA
Found at i:230185804 original size:40 final size:40
Alignment explanation
Indices: 230185749--230185952 Score: 252
Period size: 40 Copynumber: 5.1 Consensus size: 40
230185739 TGAATGATAC
* * *
230185749 CCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-TTATAT
*
230185789 CCGGGCTGAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* *
230185829 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
* *
230185869 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGTTATAT
* ** *
230185909 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
230185949 CCGG
1 CCGG
230185953 TTAAATTCCG
Statistics
Matches: 142, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.04
40 130 0.92
41 7 0.05
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGTTATAT
Found at i:230185882 original size:80 final size:80
Alignment explanation
Indices: 230185745--230185952 Score: 310
Period size: 80 Copynumber: 2.6 Consensus size: 80
230185735 CATTTGAATG
* * *
230185745 ATACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG-TGATTATATCCGGGCTGAGACCCGAAGGC
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
230185809 ATTCGTGCGAGTTGTT
65 ATTCGTGCGAGTTGCT
* * *
230185825 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
230185890 TTCGTGCGAGTTGCT
66 TTCGTGCGAGTTGCT
* * *
230185905 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGG
230185953 TTAAATTCCG
Statistics
Matches: 114, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 112 0.98
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATACCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGCT
Found at i:230189659 original size:45 final size:45
Alignment explanation
Indices: 230189497--230189670 Score: 194
Period size: 45 Copynumber: 3.8 Consensus size: 45
230189487 GGTTGAGCAT
**
230189497 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CC
* * *
230189543 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC----C
230189588 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
* *
230189635 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
230189671 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 21
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 36 0.33
46 28 0.26
47 29 0.27
48 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACC
Found at i:230197117 original size:46 final size:46
Alignment explanation
Indices: 230197067--230197242 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
230197057 TGGTTGAGCA
230197067 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
230197113 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
230197158 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
230197206 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
230197243 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:230197223 original size:93 final size:93
Alignment explanation
Indices: 230197064--230197235 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
230197054 GGATGGTTGA
* *
230197064 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
230197129 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
230197157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
230197222 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
230197236 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:230198585 original size:29 final size:29
Alignment explanation
Indices: 230198543--230199021 Score: 854
Period size: 29 Copynumber: 16.5 Consensus size: 29
230198533 GGGGGCGTTA
230198543 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
*
230198572 CACACACAGTGCCTCGATTACTGATCTCA
1 CACACACAGTGCCTCGATTACTGATCTCG
230198601 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198630 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198659 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198688 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198717 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198746 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198775 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198804 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198833 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198862 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
230198891 CACACACAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
*
230198920 CACACATAGTGCCTCGATTACTGATCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
* *
230198949 CACACATAGTGCCTCGATTACTGGTCTCG
1 CACACACAGTGCCTCGATTACTGATCTCG
* * * *
230198978 CACACATAGTG-CTCGGTTAACGGAAT-TTG
1 CACACACAGTGCCTCGATT-ACTG-ATCTCG
230199007 CACACACAGTGCCTC
1 CACACACAGTGCCTC
230199022 TAATCATTCG
Statistics
Matches: 438, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
28 6 0.01
29 428 0.98
30 4 0.01
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (29 bp):
CACACACAGTGCCTCGATTACTGATCTCG
Found at i:230201420 original size:49 final size:49
Alignment explanation
Indices: 230201352--230201474 Score: 219
Period size: 49 Copynumber: 2.5 Consensus size: 49
230201342 TACATATATG
*
230201352 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
230201401 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
*
230201450 TGTGATGAGGCCTAATGGCCAATGT
1 TGTGATGAGGCCTAATGGCCGATGT
230201475 AAAATATATG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.27, C:0.11, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTACGTATA
Found at i:230207317 original size:29 final size:29
Alignment explanation
Indices: 230207284--230207357 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 29
230207274 CCTTCGAGCT
* *
230207284 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
* **
230207313 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
230207342 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
230207358 ATCTCGTCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:230213389 original size:20 final size:20
Alignment explanation
Indices: 230213339--230213389 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
230213329 TGGGATTTTG
*
230213339 ATGCACATGACATGTATGAT
1 ATGCACATGATATGTATGAT
230213359 ATGCACATGATATGTATGAT
1 ATGCACATGATATGTATGAT
230213379 ATGCACATGAT
1 ATGCACATGAT
230213390 GTAATCATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGCACATGATATGTATGAT
Found at i:230213515 original size:24 final size:23
Alignment explanation
Indices: 230213439--230213625 Score: 256
Period size: 24 Copynumber: 8.0 Consensus size: 23
230213429 GAGGAAGTGC
230213439 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
230213462 TAAAGGGCTTATGCCCCAG-T-T
1 AAAAGGGCTTATGCCCCAGTTAT
230213483 -AAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
230213505 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
230213529 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
230213553 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
230213577 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
230213601 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
230213625 A
1 A
230213626 TGATAAAGCA
Statistics
Matches: 151, Mismatches: 6, Indels: 13
0.89 0.04 0.08
Matches are distributed among these distances:
20 18 0.12
21 2 0.01
22 2 0.01
23 39 0.26
24 80 0.53
25 10 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:230213575 original size:47 final size:47
Alignment explanation
Indices: 230213438--230213603 Score: 268
Period size: 47 Copynumber: 3.6 Consensus size: 47
230213428 GGAGGAAGTG
230213438 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG-T-T
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
230213483 --AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
230213529 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
230213576 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
230213604 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
43 22 0.20
44 18 0.16
45 1 0.01
46 1 0.01
47 48 0.43
48 22 0.20
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:230213575 original size:71 final size:70
Alignment explanation
Indices: 230213438--230213624 Score: 274
Period size: 71 Copynumber: 2.7 Consensus size: 70
230213428 GGAGGAAGTG
*
230213438 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAG---TTAAAGGGCTTATGCCCCA
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
230213500 GTTAT
66 GTTAT
230213505 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
230213570 AGTTAT
65 AGTTAT
* * *
230213576 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
230213625 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 4, Indels: 9
0.89 0.03 0.07
Matches are distributed among these distances:
67 24 0.22
68 18 0.17
71 55 0.50
72 12 0.11
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCA
GTTAT
Found at i:230213850 original size:31 final size:31
Alignment explanation
Indices: 230213815--230213909 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
230213805 CGTTTACAGT
230213815 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
230213846 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
230213877 AAAGGCTCCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
230213908 AA
1 AA
230213910 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:230218093 original size:26 final size:26
Alignment explanation
Indices: 230218006--230218109 Score: 118
Period size: 29 Copynumber: 3.8 Consensus size: 26
230217996 ATACTCGATT
**
230218006 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCAT---ATTCGAGC
* *
230218035 CCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATA---TTCGAGC
230218064 TCGCACACTTAGTGCCATATTCGAGC
1 TCGCACACTTAGTGCCATATTCGAGC
230218090 TCGCACACTTAGTGCCATAT
1 TCGCACACTTAGTGCCATAT
230218110 ATTTCCAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
26 28 0.42
29 38 0.58
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (26 bp):
TCGCACACTTAGTGCCATATTCGAGC
Found at i:230218125 original size:55 final size:55
Alignment explanation
Indices: 230218006--230218138 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 55
230217996 ATACTCGATT
* * *
230218006 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACATAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCAT---ATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
* * * * *
230218064 TCGCACACTTAGTGCCATATTCGAGCTCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
*
230218119 AT-GCACAGTTAGTGCCATAT
1 -TCGCACACTTAGTGCCATAT
230218139 ATTTCCAGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
55 46 0.71
56 1 0.02
58 18 0.28
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (55 bp):
TCGCACACTTAGTGCCATATTCAAGCCCGCACACATAGTGCCATACACTTCCAGC
Found at i:230218134 original size:29 final size:29
Alignment explanation
Indices: 230218066--230218162 Score: 139
Period size: 29 Copynumber: 3.4 Consensus size: 29
230218056 CTTCGAGCTC
*
230218066 GCACACTTAGTGCC--ATA-TTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
230218091 CGCACACTTAGTGCCATATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
*
230218121 GCACAGTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230218150 GCACACTTAGTGC
1 GCACACTTAGTGC
230218163 TAATCTCGTC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.22
28 3 0.05
29 46 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:230225509 original size:29 final size:29
Alignment explanation
Indices: 230225475--230225608 Score: 101
Period size: 29 Copynumber: 4.6 Consensus size: 29
230225465 TACTCGATTT
* * *
230225475 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
230225504 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
230225533 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
230225562 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
230225591 TGCACACTTAGTGCCATA
1 CGCACACTTAGTGCCATA
230225609 TATTTCCAGC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:230225567 original size:58 final size:59
Alignment explanation
Indices: 230225474--230225633 Score: 200
Period size: 58 Copynumber: 2.7 Consensus size: 59
230225464 ATACTCGATT
** * ** * * *
230225474 TCGCACACTTAGTGCCATGCGATTT-AAGCCCGCACACATAGTGCCATACCCTTCGAGC-
1 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
* *
230225532 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCA
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
230225591 T-GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
1 TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGC
230225634 TAATCTCGTC
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 85 0.94
59 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (59 bp):
TCGCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATACACTTCCAGCA
Found at i:230225609 original size:29 final size:29
Alignment explanation
Indices: 230225534--230225633 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
230225524 CTTCGAGCTC
230225534 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230225563 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230225592 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230225621 GCACACTTAGTGC
1 GCACACTTAGTGC
230225634 TAATCTCGTC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:230229910 original size:38 final size:39
Alignment explanation
Indices: 230229818--230229930 Score: 156
Period size: 38 Copynumber: 2.9 Consensus size: 39
230229808 TATGGTAACC
** * *
230229818 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
230229858 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
230229897 CGC-CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
230229931 TCGAACATTC
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
38 30 0.46
39 20 0.31
40 15 0.23
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:230234015 original size:45 final size:45
Alignment explanation
Indices: 230233966--230234136 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 45
230233956 TGGTTGAGCA
230233966 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * *
230234011 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
* *
230234056 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* *
230234104 CCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
230234137 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 41 0.38
46 19 0.18
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:230234129 original size:92 final size:92
Alignment explanation
Indices: 230233963--230234131 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
230233953 GGATGGTTGA
* *
230233963 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
230234028 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
* *
230234055 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAGT
230234120 TGAGT-CGAGTTC
65 TGAGTCCGAGTTC
230234132 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 50 0.69
93 22 0.31
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:230241567 original size:46 final size:46
Alignment explanation
Indices: 230241517--230241689 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
230241507 TGGTTGAGCA
*
230241517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
230241563 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
230241610 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
230241656 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
230241690 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:230241673 original size:93 final size:93
Alignment explanation
Indices: 230241514--230241684 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
230241504 GGATGGTTGA
* *
230241514 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
230241579 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
230241607 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
230241672 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
230241685 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:230241951 original size:19 final size:20
Alignment explanation
Indices: 230241914--230241951 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
230241904 ATAAGGTGGT
230241914 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
230241934 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
230241952 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:230244387 original size:26 final size:24
Alignment explanation
Indices: 230244328--230244388 Score: 122
Period size: 24 Copynumber: 2.5 Consensus size: 24
230244318 GTTTACTATG
230244328 GCACTATGTGTGCGAGTGTGACGA
1 GCACTATGTGTGCGAGTGTGACGA
230244352 GCACTATGTGTGCGAGTGTGACGA
1 GCACTATGTGTGCGAGTGTGACGA
230244376 GCACTATGTGTGC
1 GCACTATGTGTGC
230244389 AAATTTGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.26
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTGACGA
Found at i:230251874 original size:2 final size:2
Alignment explanation
Indices: 230251867--230251892 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
230251857 TAATATACAA
230251867 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
230251893 GTGTAATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:230255499 original size:24 final size:24
Alignment explanation
Indices: 230255467--230255529 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
230255457 AATCTCAATT
230255467 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
230255491 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
230255515 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
230255530 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:230263513 original size:24 final size:24
Alignment explanation
Indices: 230263481--230263543 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
230263471 AATCTCAATT
230263481 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
230263505 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
230263529 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
230263544 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:230265833 original size:31 final size:31
Alignment explanation
Indices: 230265774--230265835 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
230265764 GAGTTTGATC
*
230265774 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
230265805 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
230265836 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:230273838 original size:31 final size:31
Alignment explanation
Indices: 230273779--230273840 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
230273769 GAGTTTGATC
*
230273779 ATATAGCACTAAGTGTGCGAGCTGAATATAT
1 ATATAGCACTAAGTGTGCGAGCTCAATATAT
230273810 ATATAGCACTAAGTGTGCG-GACTCAATATAT
1 ATATAGCACTAAGTGTGCGAG-CTCAATATAT
230273841 GCTTTTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (31 bp):
ATATAGCACTAAGTGTGCGAGCTCAATATAT
Found at i:230277352 original size:2 final size:2
Alignment explanation
Indices: 230277345--230277385 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
230277335 GCTTCGCCAC
*
230277345 AT AT AT AT AT AT AT AT AT AT AT TT AT AT -T AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
230277386 CTGTTCTGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:230283408 original size:29 final size:26
Alignment explanation
Indices: 230283361--230283419 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
230283351 CCTTTCATTT
230283361 ATTTCACATTTAAACCCCTCAATTTGCAC
1 ATTTCACATTTAAACCCCT--ATTTG-AC
*
230283390 ATTTCACAATTT-AATCCCTATTTGAC
1 ATTTCAC-ATTTAAACCCCTATTTGAC
230283416 ATTT
1 ATTT
230283420 TTGTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 5 0.18
29 13 0.46
30 4 0.14
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (26 bp):
ATTTCACATTTAAACCCCTATTTGAC
Found at i:230289127 original size:68 final size:70
Alignment explanation
Indices: 230289055--230289252 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
230289045 ACACCCTGTA
* * * *
230289055 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
230289117 ATAAAT
65 ATAAAT
*
230289123 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
230289188 ATAAAT
65 ATAAAT
*
230289194 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
230289253 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:230289166 original size:41 final size:41
Alignment explanation
Indices: 230289121--230289238 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
230289111 TGAAAGATAA
230289121 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
230289162 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
230289192 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
230289233 ATGTAG
1 ATGTAG
230289239 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:230289178 original size:71 final size:71
Alignment explanation
Indices: 230289089--230289252 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
230289079 GAGATGTATC
230289089 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
230289154 AGGACA
66 AGGACA
230289160 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
230289225 AGGACA
66 AGGACA
230289231 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
230289253 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:230296686 original size:68 final size:70
Alignment explanation
Indices: 230296614--230296811 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
230296604 ACACCCTGTA
* * * *
230296614 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
230296676 ATAAAT
65 ATAAAT
*
230296682 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
230296747 ATAAAT
65 ATAAAT
*
230296753 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
230296812 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:230296725 original size:41 final size:41
Alignment explanation
Indices: 230296680--230296797 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
230296670 TGAAAGATAA
230296680 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
230296721 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
230296751 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
230296792 ATGTAG
1 ATGTAG
230296798 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:230296737 original size:71 final size:71
Alignment explanation
Indices: 230296648--230296811 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
230296638 GAGATGTATC
230296648 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
230296713 AGGACA
66 AGGACA
230296719 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
230296784 AGGACA
66 AGGACA
230296790 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
230296812 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:230303019 original size:28 final size:29
Alignment explanation
Indices: 230302979--230303077 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
230302969 GTAATAAGCC
*
230302979 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
230303007 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
230303035 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
230303064 CGCACACTTAGTGC
1 CGCACACTTAGTGC
230303078 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:230307040 original size:40 final size:40
Alignment explanation
Indices: 230306960--230307183 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
230306950 GCTACTCGTT
* * *
230306960 CAAATACCTTCGGGACAT-G-CCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATT-TAGTAACTCGCA
230306998 CAAATGCCTTCGGGACTTA-TCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGT-CCGGATTTAGTAACTCGCA
230307038 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
*
230307078 CAAATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
* ** * * *
230307118 CAAATGCCTTTGGCTCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAAC-TCGCA
*
230307159 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGTCCGGA
230307184 CATCATTCGA
Statistics
Matches: 164, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 16 0.10
39 3 0.02
40 133 0.81
41 12 0.07
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:230307103 original size:80 final size:80
Alignment explanation
Indices: 230306979--230307183 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 80
230306969 TCGGGACATG
* *
230306979 CCGGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATG
230307044 CCTTCGGATCTTAGT
66 CCTTCGGATCTTAGT
* *
230307059 CCGGATTTAGTAACTCGCACAAATGCCTT-TGGATCTTAGT-CCGGATTTAGTAACTCGCACAAA
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATTTAGTAACTCGCACAAA
* *
230307122 TGCCTTTGGCTCTTAGT
64 TGCCTTCGGATCTTAGT
* * *
230307139 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTATCCCGGA
230307184 CATCATTCGA
Statistics
Matches: 109, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.03
80 94 0.86
81 12 0.11
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.28
Consensus pattern (80 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCACAAATG
CCTTCGGATCTTAGT
Found at i:230311682 original size:47 final size:47
Alignment explanation
Indices: 230311621--230311941 Score: 273
Period size: 47 Copynumber: 6.8 Consensus size: 47
230311611 AATGAGAGCC
*
230311621 AGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGAGTGCT
* * * *
230311669 AGTGTAAGA-CATGTTTGGGACAT-GCTTCGGCTTTGAGACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGAGTGCT
* * * * *
230311715 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGATATGTGTGCTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCT--TGAGACGAGTGC-T
* *
230311764 A-TGTAAGACCATGTCTGGGACATGGTATCGGCATTGAGACAAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACGAGTGCT
* * * * *
230311811 AGTGTAAGA-CGTGTCTAGGACA-CGCATCGGCCTCGATGATGA-TAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGA-GACGAGT-GCT
* * * * * *
230311857 CAGTGTAAGACCTTATCTGGGACATGGCATCGACTTGAGATGTGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGAGTGCT
230311905 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA
230311942 CATGTGTCAG
Statistics
Matches: 217, Mismatches: 40, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
46 57 0.26
47 80 0.37
48 52 0.24
49 23 0.11
50 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACGAGTGCT
Found at i:230311788 original size:142 final size:141
Alignment explanation
Indices: 230311573--230311972 Score: 436
Period size: 142 Copynumber: 2.8 Consensus size: 141
230311563 GATATGTGCT
* * * * * *
230311573 CCAGTGTTAGACATGTCTGGGACATGCATCAACCACATAATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGAATGTGAGCTAGTGTAAGACCATGTCT
* * * * *
230311638 AGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGGGACATGCTTCGGCTTT
66 GGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGGGACACGCATCGGCCTC
230311703 GA-GACGAGAG
131 GATGACGAGAG
*
230311713 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATGTGTGCTTA-TGTAAGACCATG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGA-ATGTGAGC-TAGTGTAAGACCATG
* * * * *
230311777 TCTGGGACATGGTATCGGCATTGAGACAAGTGCTAGTGTAAGACGTGTCTAGGACACGCATCGGC
63 TCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGGGACACGCATCGGC
* *
230311842 CTCGATGATGATAG
128 CTCGATGACGAGAG
* * * * *
230311856 TCAGTGTAAGACCTTATCTGGGACATGGCATC-GACT-TGAGATGTGAGCTAGTGTAAGACCATG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGA-ATGTGAGCTAGTGTAAGACCATG
* * * * *
230311919 TCTGGGACATGGCATCGGC-TTGACATGTGT-C-AGTGTAAGACCTTTTTGGGACAC
63 TCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGGGACAC
230311973 AGTATCAACA
Statistics
Matches: 218, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
139 19 0.09
140 34 0.16
141 11 0.05
142 117 0.54
143 17 0.08
144 15 0.07
145 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (141 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGAATGTGAGCTAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTTTGGGACACGCATCGGCCTC
GATGACGAGAG
Found at i:230311818 original size:96 final size:94
Alignment explanation
Indices: 230311669--230311934 Score: 274
Period size: 95 Copynumber: 2.8 Consensus size: 94
230311659 GACGAGTGCT
* * *
230311669 AGTGTAAGA-CATGTTTGGGACATGCT-TCGGCTTTGAGACGAGAGCCAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGTATCGGC-TTGAGACGAGAGCTAGTGTAAGACATGTCTG
230311732 GGACATGCATCAGCCTCAAGAT-ATG-T-GTGC
65 GGACATGCATCAGCCTC--GATGATGATAGT-C
* * *
230311762 TTA-TGTAAGACCATGTCTGGGACATGGTATCGGCATTGAGACAAGTGCTAGTGTAAGACGTGTC
1 --AGTGTAAGACCATGTCTGGGACATGGTATCGGC-TTGAGACGAGAGCTAGTGTAAGACATGTC
* * *
230311826 TAGGACACGCATCGGCCTCGATGATGATAGTC
63 TGGGACATGCATCAGCCTCGATGATGATAGTC
* * * * * *
230311858 AGTGTAAGACCTTATCTGGGACATGGCATCGACTTGAGATGTGAGCTAGTGTAAGACCATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGTATCGGCTTGAGACGAGAGCTAGTGTAAGA-CATGTCTG
230311923 GGACATGGCATC
65 GGACAT-GCATC
230311935 GGCTTGACAT
Statistics
Matches: 142, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
94 30 0.21
95 57 0.40
96 53 0.37
97 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (94 bp):
AGTGTAAGACCATGTCTGGGACATGGTATCGGCTTGAGACGAGAGCTAGTGTAAGACATGTCTGG
GACATGCATCAGCCTCGATGATGATAGTC
Found at i:230315015 original size:35 final size:36
Alignment explanation
Indices: 230314925--230315036 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 36
230314915 TATAAAAGAA
*
230314925 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATC-G
230314962 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
230314998 GTCTTA-CCGGTCATAATCTCCACACGTAGTCATCG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
230315033 GTCT
1 GTCT
230315037 ACATACCCAC
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
35 33 0.45
36 7 0.09
37 34 0.46
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (36 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCG
Found at i:230315352 original size:47 final size:49
Alignment explanation
Indices: 230315156--230315413 Score: 420
Period size: 49 Copynumber: 5.4 Consensus size: 49
230315146 TTTTACATTA
* *
230315156 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
*
230315205 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
230315254 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
230315303 GCCATTAGGCCTCATCACATATACAT-C-CTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
*
230315350 GCCATTAGGCCTTATCACATATACAT-CACTTTCACA-T--TCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
* *
230315395 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
230315414 CATATATGTA
Statistics
Matches: 204, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
45 26 0.13
47 47 0.23
48 9 0.04
49 122 0.60
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
Found at i:230318697 original size:29 final size:29
Alignment explanation
Indices: 230318661--230318795 Score: 252
Period size: 29 Copynumber: 4.7 Consensus size: 29
230318651 TGTTGAAAAA
* *
230318661 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
230318690 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
230318719 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
230318748 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
230318777 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
230318796 AATCACTCGC
Statistics
Matches: 104, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 104 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:230322465 original size:39 final size:38
Alignment explanation
Indices: 230322421--230322609 Score: 166
Period size: 39 Copynumber: 4.8 Consensus size: 38
230322411 GGATATAACG
* *
230322421 ACTCGCTCAAATGCCTTCGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGGTT-TAGTA
*
230322460 ACTCGCACGAATGCCTTCGGGACTTAA-CCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTC-GGAC-TAAGCCC-GGTTTAGTA
* * *
230322500 ACTCGCACAAATGCCTTCGGGCTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGACTAAGCCCGG-TTTAGTA
* * * * * *
230322539 ACTCGCACGAACGCCTTCGGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGA-CTAAGCCCGG-TTTAGTA
* *
230322579 ACTTAGCACAAA-GCCTTCGGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGACTAAGCCCGG
230322610 ACATCATTCA
Statistics
Matches: 126, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
38 4 0.03
39 55 0.44
40 54 0.43
41 13 0.10
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGACTAAGCCCGGTTTAGTA
Found at i:230322502 original size:40 final size:40
Alignment explanation
Indices: 230322421--230322609 Score: 158
Period size: 40 Copynumber: 4.8 Consensus size: 40
230322411 GGATATAACG
* *
230322421 ACTCGCTCAAATGCCTTC-GGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGGTT-TAGTA
*
230322460 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * *
230322500 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * ** * * *
230322539 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAACCCGGGTTTAGTA
* *
230322579 ACTTAGCACAAA-GCCTTC-GGACTTAGCCCGG
1 AC-TCGCACAAATGCCTTCGGGACTTAACCCGG
230322610 ACATCATTCA
Statistics
Matches: 128, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 56 0.44
40 57 0.45
41 13 0.10
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:230322555 original size:79 final size:80
Alignment explanation
Indices: 230322396--230322610 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 80
230322386 GAATCACGTA
* *** * **
230322396 CCTTCGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGACAAAGCCCGG-TTATAG
1 CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATTATAG
*
230322458 TAACTCGCACGAATG
66 TAACTCGCACGAACG
* * *
230322473 CCTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGATT-TA
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATTATA
*
230322536 TTAACTCGCACGAACG
65 GTAACTCGCACGAACG
** * *
230322552 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGACTTAGCCCGGA
230322611 CATCATTCAA
Statistics
Matches: 113, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
77 5 0.04
78 9 0.08
79 89 0.79
80 10 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGATTATAG
TAACTCGCACGAACG
Found at i:230330603 original size:40 final size:39
Alignment explanation
Indices: 230330418--230330606 Score: 166
Period size: 40 Copynumber: 4.7 Consensus size: 39
230330408 GGATATAACG
* ** *
230330418 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * * *
230330458 ACTTGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
230330498 ACTCGCACAAATGCCTTTGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
230330537 ACTCGCACGAACGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
230330577 ACTTAGCACAAAGCCTTCGGGACTTAGCCC
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCC
230330607 AGACATCATT
Statistics
Matches: 119, Mismatches: 23, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:230332655 original size:29 final size:29
Alignment explanation
Indices: 230332565--230332724 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
230332555 ACTCGATTTC
* * **
230332565 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
230332594 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
230332622 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
230332652 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230332681 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230332710 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
230332725 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:230340815 original size:29 final size:29
Alignment explanation
Indices: 230340725--230340884 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
230340715 ACTCGATTTC
* * **
230340725 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
230340754 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
230340782 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
230340812 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230340841 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
230340870 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
230340885 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:230343458 original size:17 final size:19
Alignment explanation
Indices: 230343399--230343451 Score: 85
Period size: 17 Copynumber: 2.9 Consensus size: 19
230343389 ATAATCTTCA
230343399 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
230343418 ATGAT-TGCAATCTTA-AT
1 ATGATATGCAATCTTAGAT
230343435 ATG-TATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
230343452 AGATATGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.03
17 15 0.47
18 11 0.34
19 5 0.16
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:230353767 original size:89 final size:87
Alignment explanation
Indices: 230353638--230353799 Score: 202
Period size: 89 Copynumber: 1.8 Consensus size: 87
230353628 ATTCGACGGA
* *
230353638 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTT-TCACATCGAAGTAGATCCAAGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTAT-AC-T-GAAGCAGATCCAAGAT
230353702 GATTTGGCATCCTTGCGTTTACAAG
63 GATTTGGCATCCTTGCGTTTACAAG
* ** * * *
230353727 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTATGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTATACTGAAGCAGATCCAAGATGA
230353791 TTTGGCATC
65 TTTGGCATC
230353800 TCTGTATTGT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 35 0.56
90 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTATACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTTACAAG
Found at i:230353870 original size:44 final size:43
Alignment explanation
Indices: 230353789--230353871 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
230353779 GATCTAAGAT
** *
230353789 GATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGAAACA
1 GATTTGGCATCTCCATATTGACAGAGAACAAATCGAAGAAACA
* *
230353832 GATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAGA
1 GATTTGGCATCTCCATATT-GACAGAGAACAAATCGAAGA
230353872 CATAGCAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
43 17 0.50
44 17 0.50
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (43 bp):
GATTTGGCATCTCCATATTGACAGAGAACAAATCGAAGAAACA
Found at i:230353986 original size:88 final size:87
Alignment explanation
Indices: 230353858--230354019 Score: 218
Period size: 88 Copynumber: 1.9 Consensus size: 87
230353848 ATTCGACAGA
* *
230353858 GAGCAGATCGAAGACATAGCAGAGCTAACCTTAAGATGTTTCACATTGAAGTAGATCCAAGATGA
1 GAGCAGATCGAAGACATAGCAGAGCTAACCTTAAGATGTTT-ACACTGAAGCAGATCCAAGATGA
230353923 TTTGGCATCCTTGCGTTGACAAG
65 TTTGGCATCCTTGCGTTGACAAG
** ** * * *
230353946 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACACTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGAGCTAACCTT-AAGATGTTTACACTGAAGCAGATCCAAGATGA
230354010 TTTGGCATCC
65 TTTGGCATCC
230354020 CTGTACTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 30 0.47
88 32 0.50
89 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGAGCTAACCTTAAGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTGACAAG
Found at i:230354007 original size:219 final size:220
Alignment explanation
Indices: 230353521--230354095 Score: 954
Period size: 219 Copynumber: 2.6 Consensus size: 220
230353511 CAGGCTAAAG
* * * * * **
230353521 CATAGCAGATTTGACCTTCAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
*
230353586 TTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* **
230353651 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGAGCTAACCTTAAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
230353716 GCGTTTACAAGGAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
*
230353741 CATAGCAGATTTGGCTTTCACGTGTTTATGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
*
230353806 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACAGAGAGCAGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
230353871 ACATAGCAGAGCTAACCTTAAGATG-TTTCACATTGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGAGCTAACCTTAAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
230353935 GCGTTGACAAGGAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
* *
230353960 CATAGCAGATTTGGCTTTCACGTGTTTACACTGAAGCAGATCTAAGATGATTTGGCATCCCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * * *
230354025 CTGTCAGAGAACAAATCGAAGAAACAAATTTCGCATCTCCATATTCGACGGAGAGCTGATCGAAG
66 TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
230354090 ACATAG
131 ACATAG
230354096 TAGATCTGAC
Statistics
Matches: 332, Mismatches: 23, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
219 190 0.57
220 142 0.43
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
TTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGAGCTAACCTTAAGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
GCGTTGACAAGGAGCAGATCGAAGA
Found at i:230354288 original size:78 final size:78
Alignment explanation
Indices: 230354052--230354498 Score: 634
Period size: 78 Copynumber: 5.8 Consensus size: 78
230354042 GAAGAAACAA
* ** * * * *
230354052 ATTTCGCATCTCCATATTCGACGGAGAGCTGATCGAAGACATAGTAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
*
230354117 CAGTTCCAAGATG
66 CAGATCCAAGATG
* *
230354130 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAA-ACACAGCAGAT-TGGACCTTTATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
230354193 GCAGATCCAAGATG
65 GCAGATCCAAGATG
** * * *
230354207 ATTTGGCATCTCCATATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
230354272 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
230354285 ATTTGGCATCTTTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCAATGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
230354350 CAGATCCAAGATG
66 CAGATCCAAGATG
* * *
230354363 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAAAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
*
230354427 GTAGATCCAAGATG
65 GCAGATCCAAGATG
230354441 ATTTGGCATCTCTGTATTAGAC-GGG-GCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
230354499 GTGTTTACAT
Statistics
Matches: 327, Mismatches: 37, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
76 29 0.09
77 71 0.22
78 226 0.69
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:230354636 original size:44 final size:45
Alignment explanation
Indices: 230354440--230354711 Score: 259
Period size: 45 Copynumber: 6.1 Consensus size: 45
230354430 GATCCAAGAT
* *
230354440 GATTTGGCATCTCTGTATTAGAC-G-GGGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAG--ATAACA
* * * * * * *
230354485 GATCTGACCT-TCATGTGTTTACATCA-A-AGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CAGAGAGCAGATCGAAGATAACA
* * * * * *
230354530 TATTTGGCATCTCTGTACTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
* * *
230354575 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
*
230354619 GATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
* * *
230354664 GATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
230354709 GAT
1 GAT
230354712 ATCACCTTTC
Statistics
Matches: 183, Mismatches: 35, Indels: 18
0.78 0.15 0.08
Matches are distributed among these distances:
43 1 0.01
44 45 0.25
45 120 0.66
46 6 0.03
47 11 0.06
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACAGAGAGCAGATCGAAGATAACA
Found at i:230354649 original size:89 final size:90
Alignment explanation
Indices: 230354512--230354711 Score: 269
Period size: 89 Copynumber: 2.2 Consensus size: 90
230354502 TTTACATCAA
* * * * *
230354512 AGCAGATCCAAGAT-GACATATTTGGCATCTCTGTACTAGACGGGGAGCAAATCGGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTACTAGACAGAGAGCAAATCGAAGATAACAG
*
230354576 ATTTGGCATCTCTGTATTAGACGGAG
65 ATTTGGCATCTCTGTATTAGACAGAG
** * * *
230354602 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACAGAGAGCAGATCGAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTACTAGACAGAGAGCAAATCGAAGATAACAGA
*
230354666 TTTGGCGTCTCTGTATTAGACAGAG
66 TTTGGCATCTCTGTATTAGACAGAG
230354691 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
230354712 ATCACCTTTC
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
89 76 0.80
90 19 0.20
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTACTAGACAGAGAGCAAATCGAAGATAACAGA
TTTGGCATCTCTGTATTAGACAGAG
Found at i:230354686 original size:134 final size:134
Alignment explanation
Indices: 230354440--230354686 Score: 306
Period size: 134 Copynumber: 1.8 Consensus size: 134
230354430 GATCCAAGAT
*
230354440 GATTTGGCATCTCTGTATTAGACGGGGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGTTT
1 GATTTGGCATCTCTGTATTAGACGGGGCAGATCGAAGA-ATAGCAGATCTGACCTTCATGTGATT
* *
230354505 ACATCAAAGCAGATCCAAGATGACATATTTGGCATCTCTGTACTAGACGGGGAGCAAATCGGAGA
65 ACATCAAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTACTAGACGGGGAGCAAATCGGAGA
230354570 TAACA
130 TAACA
* * * *
230354575 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TGT-A
1 GATTTGGCATCTCTGTATTAGACGG-G-GCAGATCGAAGAATAGCAGATCTGACCT-TCATGTGA
* * * *
230354636 TTAGA-CAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGAC
63 TTACATCA-A-AGCAGATCCAAGATAACAGATTTGGCATCTCTGTACTAGAC
230354687 AGAGAGCAGA
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
132 2 0.02
133 5 0.05
134 50 0.52
135 28 0.29
136 1 0.01
137 10 0.10
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (134 bp):
GATTTGGCATCTCTGTATTAGACGGGGCAGATCGAAGAATAGCAGATCTGACCTTCATGTGATTA
CATCAAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTACTAGACGGGGAGCAAATCGGAGAT
AACA
Found at i:230359691 original size:40 final size:40
Alignment explanation
Indices: 230359647--230360041 Score: 672
Period size: 40 Copynumber: 10.0 Consensus size: 40
230359637 GAATACACAT
* * *
230359647 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
230359687 CACCAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
230359727 CTCTAGCACGAATGCTCTTCGAGACTTAGCCC-GATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
230359766 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT-A
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
230359805 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
230359845 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
230359885 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
230359925 CACCAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
230359964 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
230360004 CACCAGCACGAATGCTCTT-GGGACTTAGCCCAGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
230360042 TAACTCTAAT
Statistics
Matches: 337, Mismatches: 15, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
39 132 0.39
40 205 0.61
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Done.