Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 730 of 770
Found at i:230938203 original size:78 final size:80
Alignment explanation
Indices: 230938060--230938249 Score: 221
Period size: 78 Copynumber: 2.4 Consensus size: 80
230938050 TTGAATGATG
* * *
230938060 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCGAAGGCGTTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTATAACCGGACTAAGATCGAAGGCATTC
230938124 GTGCGAGTTAATA-AA
65 GTGCGAGTTAATATAA
* **
230938139 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AACCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAACCGGACTAAGAT--CGAAGGCATT
*
230938201 CGTGCGAGTTACTATAA
64 CGTGCGAGTTAATATAA
** *
230938218 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
230938250 CGTTATATCC
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
76 1 0.01
77 9 0.09
78 46 0.48
79 40 0.42
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAACCGGACTAAGATCGAAGGCATTCG
TGCGAGTTAATATAA
Found at i:230938231 original size:40 final size:39
Alignment explanation
Indices: 230938113--230938249 Score: 170
Period size: 39 Copynumber: 3.5 Consensus size: 39
230938103 GGACTAAGAT
* * *
230938113 CGAAGGCGTTCGTGCGAGTTAATAAATCCGGGCTAAG-CC
1 CGAAGGCATTCGTGCGAGTTACTAAA-CCGGGCTTAGTCC
*
230938152 CGAAGGCATTTGTGCGAGTTACTAAACCGGG-TTAAGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAACCGGGCTT-AGTCC
*
230938191 CGAAGGCATTCGTGCGAGTTACTATAACCGGGCTTTGTCC
1 CGAAGGCATTCGTGCGAGTTACTA-AACCGGGCTTAGTCC
* *
230938231 CGAAGGCATTTGAGCGAGT
1 CGAAGGCATTCGTGCGAGT
230938250 CGTTATATCC
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
37 1 0.01
38 7 0.08
39 48 0.56
40 28 0.33
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (39 bp):
CGAAGGCATTCGTGCGAGTTACTAAACCGGGCTTAGTCC
Found at i:230944770 original size:53 final size:53
Alignment explanation
Indices: 230944686--230944892 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
230944676 TTCCTTTTTA
*
230944686 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * * *
230944739 AACTCACCATTGCCATGCCTTGGCATTGTCTTACATGGGATCTTTGCCTTACCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-TG
** * * * * * * * *
230944793 TAGTTTATCAATGCCATGTCTTGACATGGTCTTAGATGATTTTCTTACCTTATAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* ** *
230944848 AACTTACCAATGCCATGCCTTGGCATATTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
230944893 TGTAACACCC
Statistics
Matches: 114, Mismatches: 37, Indels: 5
0.73 0.24 0.03
Matches are distributed among these distances:
53 44 0.39
54 34 0.30
55 36 0.32
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:230946340 original size:28 final size:27
Alignment explanation
Indices: 230946277--230946346 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
230946267 ATAGTGAGTC
*
230946277 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
230946304 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
230946332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
230946347 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:230948143 original size:13 final size:13
Alignment explanation
Indices: 230948125--230948149 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
230948115 ATCATCAAGA
230948125 AATAAATTTATAT
1 AATAAATTTATAT
230948138 AATAAATTTATA
1 AATAAATTTATA
230948150 GATGTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATTTATAT
Found at i:230951573 original size:80 final size:80
Alignment explanation
Indices: 230951489--230951637 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
230951479 TATGGTAACC
* * * *
230951489 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
230951553 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
230951569 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
230951634 CCGG
66 CCGG
230951638 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:230951579 original size:40 final size:38
Alignment explanation
Indices: 230951530--230951637 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
230951520 ATCACGATTT
*
230951530 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
230951570 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
230951610 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
230951638 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:230959932 original size:93 final size:93
Alignment explanation
Indices: 230959820--230959991 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
230959810 CGCCCATAAG
* *
230959820 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
230959885 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
230959913 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
230959978 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
230959992 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:230959988 original size:46 final size:46
Alignment explanation
Indices: 230959813--230959988 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
230959803 TGTAACCCGC
* * *
230959813 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
230959859 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
230959909 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
230959952 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
230959989 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:230962542 original size:28 final size:28
Alignment explanation
Indices: 230962473--230962573 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
230962463 GACAAGATTG
* * * *
230962473 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
230962503 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
230962531 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
230962560 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
230962574 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:230970462 original size:28 final size:28
Alignment explanation
Indices: 230970393--230970493 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
230970383 GACAAGATTG
* * * *
230970393 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
230970423 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
230970451 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
230970480 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
230970494 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:230973722 original size:50 final size:50
Alignment explanation
Indices: 230973651--230973949 Score: 285
Period size: 50 Copynumber: 6.0 Consensus size: 50
230973641 AACCAAGCTT
* *
230973651 TTGTGGTGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCCC
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
* * * *** * * * * **
230973701 TTATGGCGATTTATATAGGAAGCCTTTACAGTAAGTCACTTGTGAAGCTT
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
*
230973751 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCTC
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
* ** * * * * *
230973801 TTATGGAAATTTATTTGGGAAACCTTTATGGTAAGTCATCTGTAAAGCCC
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
* * * * * *
230973851 TTGTGGCAATTTATTTGGAAAACCTTTGTGGGGAGTCACCTGTAAAGCCT
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
* * * *
230973901 TTGTGGCGATTTATTTGGGGAGCCCTTGTGG-CAGGTTACCTATAAAGCC
1 TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGA-GTCACCTATAAAGCC
230973950 TAAGTGGTGT
Statistics
Matches: 198, Mismatches: 50, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
49 1 0.01
50 197 0.99
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (50 bp):
TTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCC
Found at i:230973827 original size:100 final size:100
Alignment explanation
Indices: 230973645--230973899 Score: 332
Period size: 100 Copynumber: 2.5 Consensus size: 100
230973635 AAACCAAACC
* **
230973645 AAGCTTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCCCTTATGGCGA
1 AAGCTTTTGTGGCGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCCCTTATGGAAA
* *
230973710 TTTATATAGGAAGCCTTTACAGTAAGTCA-CTTGTG
66 TTTATATAGGAAACCTTTACAGTAAGTCATC-TGTA
* *
230973745 AAGCTTTTGTGGCGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCTCTTATGGAAA
1 AAGCTTTTGTGGCGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCCCTTATGGAAA
* * **
230973810 TTTATTTGGGAAACCTTTATGGTAAGTCATCTGTA
66 TTTATATAGGAAACCTTTACAGTAAGTCATCTGTA
** * * * * *
230973845 AAGCCCTTGTGGCAATTTATTTGGAAAACCTTTGTGGGGAGTCACCTGTAAAGCC
1 AAGCTTTTGTGGCGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCC
230973900 TTTGTGGCGA
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 134 0.99
101 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (100 bp):
AAGCTTTTGTGGCGATTTATTTGGGAAGCCTTTGTGGCGAGTCACCTATAAAGCCCTTATGGAAA
TTTATATAGGAAACCTTTACAGTAAGTCATCTGTA
Found at i:230977877 original size:20 final size:20
Alignment explanation
Indices: 230977852--230977893 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
230977842 GATAACTTAT
230977852 ATTAATAGACTAACCTAAAC
1 ATTAATAGACTAACCTAAAC
230977872 ATTAATAGACTAACCTAAAC
1 ATTAATAGACTAACCTAAAC
230977892 AT
1 AT
230977894 GTCCTTAGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.19, G:0.05, T:0.26
Consensus pattern (20 bp):
ATTAATAGACTAACCTAAAC
Found at i:230981384 original size:40 final size:40
Alignment explanation
Indices: 230981318--230981484 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
230981308 AAATTGAATG
* * *
230981318 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
230981357 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
230981397 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
230981437 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
230981477 ATATCCGG
1 ATATCCGG
230981485 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:230989348 original size:40 final size:40
Alignment explanation
Indices: 230989289--230989430 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
230989279 AAATTGAATG
* * *
230989289 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
230989329 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
230989369 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
230989409 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
230989431 GCATTCGTTA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:230989431 original size:40 final size:38
Alignment explanation
Indices: 230989330--230989490 Score: 177
Period size: 40 Copynumber: 4.2 Consensus size: 38
230989320 CTGGAAATTA
* *** *
230989330 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTTATTC
230989370 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGC-AGTTATTC
230989410 TATCCGGGCTAAGACCCGAAGGCA-T-T-C-GTTATTC
1 TATCCGGGCTAAGACCCGAAGGCATTGTGCAGTTATTC
* *
230989444 TATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATTA
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCA-GTTATTC
230989484 TATCCGG
1 TATCCGG
230989491 TTATATTCCG
Statistics
Matches: 106, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
34 31 0.29
36 2 0.02
37 2 0.02
38 1 0.01
39 4 0.04
40 66 0.62
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAGTTATTC
Found at i:230989446 original size:34 final size:36
Alignment explanation
Indices: 230989370--230989469 Score: 150
Period size: 34 Copynumber: 2.7 Consensus size: 36
230989360 CTAGTGGCTA
230989370 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTATTC
1 TATCCGGGCTAAGACCCGAAGGCA-T--TGC-AGTTATTC
230989410 TATCCGGGCTAAGACCCGAAGGCATT-C-GTTATTC
1 TATCCGGGCTAAGACCCGAAGGCATTGCAGTTATTC
230989444 TATCCGGGCTAAGACCCGAAGGCATT
1 TATCCGGGCTAAGACCCGAAGGCATT
230989470 TGTGCACGTG
Statistics
Matches: 60, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
34 33 0.55
36 1 0.02
37 1 0.02
39 1 0.02
40 24 0.40
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (36 bp):
TATCCGGGCTAAGACCCGAAGGCATTGCAGTTATTC
Found at i:230996449 original size:37 final size:39
Alignment explanation
Indices: 230996380--230996565 Score: 292
Period size: 37 Copynumber: 4.9 Consensus size: 39
230996370 AATGTTCGAG
230996380 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
230996419 TGATA-CCGGGCTAAGCCC-AAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
230996456 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
230996494 TGATA-CCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
230996531 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
230996566 GGTTACCATA
Statistics
Matches: 137, Mismatches: 4, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
37 61 0.45
38 55 0.40
39 5 0.04
40 16 0.12
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:230996504 original size:75 final size:76
Alignment explanation
Indices: 230996380--230996565 Score: 311
Period size: 75 Copynumber: 2.4 Consensus size: 76
230996370 AATGTTCGAG
230996380 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCAAGGCAAT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCAAGGCAAT
230996445 TGTGCGAGCTA
66 TGTGCGAGCTA
*
230996456 TGATATCC-GGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCGAAGGCAAT
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCAAGGCAAT
* *
230996520 TGTGCGAGTTG
66 TGTGCGAGCTA
* *
230996531 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
230996566 GGTTACCATA
Statistics
Matches: 103, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
75 72 0.70
76 14 0.14
77 17 0.17
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (76 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCGGGCTAAGCCCAAGGCAAT
TGTGCGAGCTA
Found at i:230998302 original size:27 final size:28
Alignment explanation
Indices: 230998272--230998341 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
230998262 ATAGTGTGTC
*
230998272 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
230998299 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
230998327 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
230998342 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:231003927 original size:15 final size:15
Alignment explanation
Indices: 231003905--231003945 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
231003895 ATTATGATAT
231003905 TCTATCTTGGATTTC
1 TCTATCTTGGATTTC
231003920 -CTTATCTTGGATTTC
1 TC-TATCTTGGATTTC
231003935 TCTATCTTGGA
1 TCTATCTTGGA
231003946 GATCTGGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.15, C:0.20, G:0.15, T:0.51
Consensus pattern (15 bp):
TCTATCTTGGATTTC
Found at i:231006660 original size:79 final size:80
Alignment explanation
Indices: 231006517--231006724 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
231006507 ACCTTCGGAG
* * ** * * * *
231006517 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
231006581 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
231006596 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
231006658 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
231006675 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
231006725 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:231006669 original size:40 final size:40
Alignment explanation
Indices: 231006617--231006724 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
231006607 TATCACGATT
** *
231006617 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
231006657 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
231006697 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
231006725 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:231014128 original size:40 final size:39
Alignment explanation
Indices: 231014076--231014182 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
231014066 TATCACGATT
** *
231014076 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
231014116 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
231014156 GCACATTGCCTTCGGGTCTTAACCCGG
1 GCACAATGCCTTCGGGTCTTAGCCCGG
231014183 TTATAATTTC
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 21 0.36
40 38 0.64
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:231014143 original size:79 final size:79
Alignment explanation
Indices: 231014036--231014182 Score: 181
Period size: 79 Copynumber: 1.9 Consensus size: 79
231014026 TATGGTAACC
* * *
231014036 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCAC-AATGCCTTCGGGTCTTAA
231014099 CCCGGATAGAATGACT
64 CCCGGATAGAATGACT
* * * * * *
231014115 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACATTGCCTTCGGGTCTTAACC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
231014180 CGG
66 CGG
231014183 TTATAATTTC
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.89
80 5 0.09
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (79 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAATGCCTTCGGGTCTTAACC
CGGATAGAATGACT
Found at i:231014182 original size:39 final size:40
Alignment explanation
Indices: 231014045--231014188 Score: 139
Period size: 39 Copynumber: 3.6 Consensus size: 40
231014035 CCGCACCAAG
* * * * * * *
231014045 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* ** *
231014084 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
231014124 GCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
* *
231014163 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
231014189 TTTCCAGCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 48 0.55
40 39 0.45
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACCACTAGCACGAAT
Found at i:231020418 original size:40 final size:40
Alignment explanation
Indices: 231020373--231020539 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
231020363 CGGAATATAA
231020373 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
231020413 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
231020453 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
231020493 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
231020532 CCGGATAT
1 CCGGATAT
231020540 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:231024750 original size:123 final size:123
Alignment explanation
Indices: 231024531--231024991 Score: 816
Period size: 123 Copynumber: 3.8 Consensus size: 123
231024521 GAATTATGTG
*
231024531 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
231024596 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
231024654 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
231024719 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
231024777 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* * *
231024842 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACAA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
* * * * *
231024900 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
231024965 GCTAAGT-CCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
231024992 AATTATATCC
Statistics
Matches: 327, Mismatches: 11, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
122 18 0.06
123 309 0.94
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGCAACGA
Found at i:231024759 original size:64 final size:64
Alignment explanation
Indices: 231024682--231024874 Score: 148
Period size: 64 Copynumber: 3.1 Consensus size: 64
231024672 TAATGATTAT
231024682 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
* * * ** * * **** * *** * * *
231024746 TGATATGTTTGTGTTTGAGCCTTAGCAA-CG-A-AAATG--AAATATGGATGTGTAATGAT--TA
1 TGATATATGTGTGTATGAGTATTTG-AATGGTACCCGGGCTAAGTCCCGAAG-GCAATTATGCTA
*
231024804 T
64 G
231024805 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
1 TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
231024869 TGATAT
1 TGATAT
231024875 GTTTGTGTTC
Statistics
Matches: 82, Mismatches: 38, Indels: 18
0.59 0.28 0.13
Matches are distributed among these distances:
58 2 0.02
59 22 0.27
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 28 0.34
65 2 0.02
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (64 bp):
TGATATATGTGTGTATGAGTATTTGAATGGTACCCGGGCTAAGTCCCGAAGGCAATTATGCTAG
Found at i:231025016 original size:40 final size:40
Alignment explanation
Indices: 231024994--231025203 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
231024984 ATGCTAGTAA
* * * *
231024994 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
231025033 ACTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 -TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
231025074 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
*
231025114 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
* * * * ** *
231025154 TTATATCCGGGCTAAGACCCGAGGGTATTCGTGCGTGTGG
1 TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
231025194 TTATATCCGG
1 TTATATCCGG
231025204 TTGTATTCCT
Statistics
Matches: 155, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 153 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TTATATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG
Found at i:231031658 original size:123 final size:123
Alignment explanation
Indices: 231031439--231031777 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
231031429 GAATTATGTG
*
231031439 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
231031504 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
231031562 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
231031627 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
231031685 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
231031750 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
231031778 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:231031801 original size:40 final size:40
Alignment explanation
Indices: 231031746--231031989 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
231031736 TGAATGATAC
* * * * **
231031746 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
231031786 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
231031826 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
231031866 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
231031906 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
231031946 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
231031986 CCGG
1 CCGG
231031990 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:231033798 original size:29 final size:28
Alignment explanation
Indices: 231033698--231033801 Score: 93
Period size: 29 Copynumber: 3.6 Consensus size: 28
231033688 GTGACGAGAT
*
231033698 TGGCACTAAGTGTGC-AAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAA-CTT-AAATATA
* * *
231033727 TGGCACTAAGTGTGCGAGCTCAACTTTATA
1 TGGCACTAAGTGTGCGAACTTAA--ATATA
* * *
231033757 TGGCATTATGTGTGCGAACTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAAT-ATA
231033786 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
231033802 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
28 3 0.05
29 33 0.56
30 23 0.39
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAACTTAAATATA
Found at i:231046878 original size:71 final size:70
Alignment explanation
Indices: 231046790--231046952 Score: 317
Period size: 71 Copynumber: 2.3 Consensus size: 70
231046780 GAGATGTATC
231046790 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT-A
231046855 AGGACA
65 AGGACA
231046861 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
231046926 GGACA
66 GGACA
231046931 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
231046953 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 29 0.32
71 63 0.68
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (70 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTAA
GGACA
Found at i:231054310 original size:40 final size:40
Alignment explanation
Indices: 231054246--231054413 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
231054236 TCTTCGGAAT
* * * *
231054246 TTAG-CCGGATACAACCACAAGCACAACTGCCTTCGGGTC
1 TTAGCCCGGATAAAACAACTAGCACAAATGCCTTCGGGTC
*
231054285 TTAGCCCGGATAAAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACAACTAGCACAAATGCCTTCGGGTC
* *
231054325 TTAGCCCGGATATAACAACTGGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACAACTAGCACAAATGCCTTCGGGTC
* * *
231054365 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATA-AAACAACTAGCACAAATGCCTTCGGGTC
231054405 TTAGCCCGG
1 TTAGCCCGG
231054414 GTATCATTCA
Statistics
Matches: 115, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
39 4 0.03
40 109 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
TTAGCCCGGATAAAACAACTAGCACAAATGCCTTCGGGTC
Found at i:231056277 original size:29 final size:28
Alignment explanation
Indices: 231056207--231056281 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
231056197 ATACTCGATT
* *
231056207 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
231056235 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
231056264 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
231056282 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:231056298 original size:29 final size:29
Alignment explanation
Indices: 231056265--231056338 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
231056255 CCTTCGAGCT
231056265 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
231056294 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
231056323 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
231056339 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:231064150 original size:29 final size:28
Alignment explanation
Indices: 231064080--231064154 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
231064070 ATACTCGATT
* *
231064080 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
231064108 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
231064137 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
231064155 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:231064171 original size:29 final size:29
Alignment explanation
Indices: 231064138--231064211 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
231064128 CCTTCGAGCT
231064138 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
231064167 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
231064196 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
231064212 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:231069494 original size:24 final size:24
Alignment explanation
Indices: 231069462--231069666 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
231069452 TATCTCAAAT
231069462 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
231069486 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
231069510 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
231069534 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
231069558 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
231069582 GCACTATGTGTGCGATTTACTAT-
1 GCACTATGTGTGCGATTTACTATG
*
231069605 GCACTA-GTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* * *
231069628 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
231069652 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
231069667 ACATAATAAG
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
22 16 0.09
23 12 0.07
24 144 0.84
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:231069679 original size:48 final size:47
Alignment explanation
Indices: 231069460--231069688 Score: 182
Period size: 48 Copynumber: 4.8 Consensus size: 47
231069450 GCTATCTCAA
** * * *
231069460 ATGCACTATGTGTGCG-ATTTACTATGGCACTATGTGTGCGATTCACT
1 ATGCACTATGTGTGCGAACATAATA-AGCACTATGTGTGCGATTTACT
** * * *
231069507 ATGGCACTATGTGTGCG-ATTTACTATGGCACTATGTGTGCGATTCACT
1 AT-GCACTATGTGTGCGAACATAATA-AGCACTATGTGTGCGATTTACT
* *
231069555 ATGGCACTATGTGTGCGATTCACT-AT-GGCACTATGTGTGCGATTTACT
1 AT-GCACTATGTGTGCGA-ACA-TAATAAGCACTATGTGTGCGATTTACT
** * * *
231069603 ATGCACTA-GTGTGCG-ATTTACTATAGCACTACGTGTGCGATTTGCT
1 ATGCACTATGTGTGCGAACATAATA-AGCACTATGTGTGCGATTTACT
*
231069649 ATAGCTCTATGTGTGCGAACATAATAAGCACTATGTGTGC
1 AT-GCACTATGTGTGCGAACATAATAAGCACTATGTGTGC
231069689 CACATTCGGT
Statistics
Matches: 155, Mismatches: 17, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
46 28 0.18
47 13 0.08
48 105 0.68
49 5 0.03
50 1 0.01
51 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (47 bp):
ATGCACTATGTGTGCGAACATAATAAGCACTATGTGTGCGATTTACT
Found at i:231077228 original size:24 final size:24
Alignment explanation
Indices: 231077196--231077378 Score: 312
Period size: 24 Copynumber: 7.6 Consensus size: 24
231077186 TATCTCAAAT
*
231077196 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
231077220 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
231077244 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
231077268 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
231077292 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
231077316 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
231077340 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
231077364 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
231077379 ACATAATAAG
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 153 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:231077391 original size:48 final size:48
Alignment explanation
Indices: 231077196--231077400 Score: 304
Period size: 48 Copynumber: 4.3 Consensus size: 48
231077186 TATCTCAAAT
*
231077196 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATA
*
231077244 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATA
*
231077292 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATA
** * * ** *
231077340 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ATTTACTATA
231077388 GCACTATGTGTGC
1 GCACTATGTGTGC
231077401 CACATTCGGT
Statistics
Matches: 148, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 143 0.97
49 5 0.03
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATA
Found at i:231084972 original size:40 final size:40
Alignment explanation
Indices: 231084895--231085113 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
231084885 AAACCAAGTA
* *
231084895 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
231084934 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
231084974 CCTTCGGGACCTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCACAAATG
231085015 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
231085055 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
231085095 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
231085114 TTATCATCCG
Statistics
Matches: 170, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
39 15 0.09
40 116 0.68
41 39 0.23
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:231085044 original size:81 final size:79
Alignment explanation
Indices: 231084895--231085113 Score: 343
Period size: 81 Copynumber: 2.7 Consensus size: 79
231084885 AAACCAAGTA
* * *
231084895 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
231084959 TAACTCGCACAAATG
65 TAACTCGCACAAATG
231084974 CCTTCGGGACCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGA-CTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
231085039 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
*
231085055 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
231085114 TTATCATCCG
Statistics
Matches: 131, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
79 10 0.08
80 51 0.39
81 70 0.53
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:231089450 original size:40 final size:40
Alignment explanation
Indices: 231089367--231089550 Score: 186
Period size: 40 Copynumber: 4.7 Consensus size: 40
231089357 TCGAATGATG
* * *
231089367 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGAC-ATA
1 TCCGGGCTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
231089406 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
231089446 TCCGGGCT-A-ATCCGAAGGCATTGGGTGCGAGTTACTAAA
1 TCCGGGCTAAGATCCGAAGGCATT-TGTGCGAGTTACTAAA
*
231089485 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
231089526 -CCGGGCTATG-TCCCGAAGGCATTTG
1 TCCGGGCTAAGAT-CCGAAGGCATTTG
231089551 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 13 0.10
39 45 0.36
40 54 0.43
41 13 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:231089572 original size:79 final size:79
Alignment explanation
Indices: 231089419--231089583 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
231089409 GGACTAAGAT
* **
231089419 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAATCCGAAGGCATTGGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAATCCGAAGGCATTGGGAACGAGTTACTAA
*
231089484 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
231089498 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT-TGAACGAG-TAG
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTA-AT-CCGAAGGCATTGGGAACGAGTTA-
* *
231089560 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
231089577 CCGAAGG
1 CCGAAGG
231089584 TACGTGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 13 0.18
81 11 0.15
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAATCCGAAGGCATTGGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:231097554 original size:39 final size:38
Alignment explanation
Indices: 231097414--231097603 Score: 177
Period size: 40 Copynumber: 4.8 Consensus size: 38
231097404 TCGAATGATG
* * * *
231097414 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTAC-GAGTTACTA-A
* * *
231097454 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAA
*
231097493 TTCC-GGCTAAGCCCGAAGGCATTGGTACGAGTTACTAA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
* *
231097531 GTCCGGGTTAAGCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTA-A
* * *
231097571 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGT
231097604 AGCTATATCC
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
38 27 0.21
39 45 0.36
40 47 0.37
41 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAA
Found at i:231099365 original size:79 final size:81
Alignment explanation
Indices: 231099264--231099448 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
231099254 ACGACTCGCT
** * *
231099264 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
231099327 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
231099344 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
231099408 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
231099424 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
231099449 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:231099448 original size:40 final size:39
Alignment explanation
Indices: 231099257--231099448 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
231099247 GGATATAACG
* ** * *
231099257 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
231099297 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
231099337 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
231099376 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
231099416 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
231099449 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:231107414 original size:79 final size:81
Alignment explanation
Indices: 231107313--231107497 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
231107303 ACGACTCGCT
** * *
231107313 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
231107376 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
231107393 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
231107457 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
231107473 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
231107498 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:231107497 original size:40 final size:39
Alignment explanation
Indices: 231107306--231107497 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
231107296 GGATATAACG
* ** * *
231107306 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
231107346 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
231107386 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
231107425 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
231107465 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
231107498 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:231111725 original size:40 final size:38
Alignment explanation
Indices: 231111673--231111781 Score: 132
Period size: 38 Copynumber: 2.8 Consensus size: 38
231111663 CTGGAAATTT
*
231111673 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGT--CATAC
**
231111713 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTCATTT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAGTCATAC
*
231111751 ATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCA
231111782 AATCGTGATA
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
37 1 0.02
38 28 0.45
39 8 0.13
40 25 0.40
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTCATAC
Found at i:231111764 original size:38 final size:38
Alignment explanation
Indices: 231111633--231111781 Score: 142
Period size: 39 Copynumber: 3.8 Consensus size: 38
231111623 AATTGAATGA
* * * * *
231111633 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAGTG-CATT
* *
231111672 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGT-GCATT
*
231111712 CATCCGGGCTAAGACCCGAAGGCATTCGTGCAGT-CATT
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTGCATT
231111750 TATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
231111782 AATCGTGATA
Statistics
Matches: 93, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
37 1 0.01
38 29 0.31
39 35 0.38
40 27 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGCATT
Found at i:231111795 original size:78 final size:78
Alignment explanation
Indices: 231111669--231111812 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
231111659 TATGCTGGAA
* * * *
231111669 ATTTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGG
1 ATTTATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGG
231111734 CATTCGTGCAGTC
66 CATTCGTGCAGTC
* * * * *
231111747 ATTTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAG
1 ATTTATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAG
231111811 GC
65 GC
231111813 CTTGGTGCGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 1 0.02
78 55 0.98
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (78 bp):
ATTTATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGG
CATTCGTGCAGTC
Found at i:231119857 original size:40 final size:39
Alignment explanation
Indices: 231119692--231119875 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
231119682 AAATTGAATG
* * *
231119692 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
231119732 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
231119772 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
231119812 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
231119851 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
231119876 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:231119900 original size:80 final size:81
Alignment explanation
Indices: 231119732--231119920 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
231119722 GCTGGAAATT
* * * *
231119732 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
231119797 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
231119813 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
231119876 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
231119892 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
231119921 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:231122970 original size:70 final size:71
Alignment explanation
Indices: 231122820--231122982 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
231122810 GAGATGTATC
231122820 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
231122885 AGGACA
66 AGGACA
231122891 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
231122955 AGGACA
66 AGGACA
231122961 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
231122983 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:231130425 original size:41 final size:41
Alignment explanation
Indices: 231130380--231130497 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
231130370 TGAAAGATAA
231130380 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
231130421 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
231130451 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
231130492 ATGTAG
1 ATGTAG
231130498 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:231130436 original size:71 final size:71
Alignment explanation
Indices: 231130348--231130511 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
231130338 GAGATGTATC
231130348 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
231130413 AGGACA
66 AGGACA
231130419 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
231130484 AGGACA
66 AGGACA
231130490 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
231130512 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:231133505 original size:29 final size:29
Alignment explanation
Indices: 231133471--231133602 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
231133461 TACTCGATTT
** * *
231133471 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
231133500 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
231133529 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
231133558 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
231133587 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
231133603 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:231141238 original size:29 final size:29
Alignment explanation
Indices: 231141204--231141335 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
231141194 TACTCGATTT
** * *
231141204 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
231141233 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
231141262 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
231141291 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
231141320 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
231141336 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:231143312 original size:46 final size:44
Alignment explanation
Indices: 231143245--231143421 Score: 187
Period size: 46 Copynumber: 3.9 Consensus size: 44
231143235 TGTAACCCGC
231143245 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGAGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGA-TTCGCAT
* *
231143291 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGC-A--T
* * * *
231143337 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGCTCGG--ATTCGCAT
* *
231143384 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAT
231143422 GCTCAACCAT
Statistics
Matches: 111, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 5 0.05
46 64 0.58
47 30 0.27
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATTCGCAT
Found at i:231143364 original size:93 final size:93
Alignment explanation
Indices: 231143252--231143423 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
231143242 CGCCCATAAG
*
231143252 CGAACTCGGACTCAACTCAACGAGCTCAGGA-GTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
231143316 AACGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
* *
231143345 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
231143410 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
231143424 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:231150819 original size:45 final size:45
Alignment explanation
Indices: 231150755--231150928 Score: 194
Period size: 45 Copynumber: 3.8 Consensus size: 45
231150745 TGTAACCCGC
231150755 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
231150800 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCAT
* * *
231150850 -C-TCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
231150893 CCATAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAACGAACTCGGACTCAACTCAACGAGCTCGGA
231150929 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 66 0.59
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
CCATAACGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:231150873 original size:92 final size:92
Alignment explanation
Indices: 231150762--231150931 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 92
231150752 CGCCCATAAG
*
231150762 CGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAA-TGAACTCGGACTCAACTCA
231150826 ACGAGCTCGGATGCCTAGTTACATCTCA
65 ACGAGCTCGGATGCCTAGTTACATCTCA
*
231150854 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAA
*
231150919 CGAGTTCGGATGC
66 CGAGCTCGGATGC
231150932 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 60 0.81
93 14 0.19
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAATGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCA
Found at i:231154793 original size:24 final size:24
Alignment explanation
Indices: 231154747--231154841 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
231154737 GCTTTATCAT
*
231154747 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
231154772 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
231154796 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
231154819 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
231154842 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:231154826 original size:47 final size:49
Alignment explanation
Indices: 231154747--231154840 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
231154737 GCTTTATCAT
*
231154747 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
231154796 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
231154841 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:231154917 original size:20 final size:20
Alignment explanation
Indices: 231154892--231154951 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
231154882 TATGATTACC
231154892 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
231154912 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
231154932 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
231154952 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:231155026 original size:25 final size:25
Alignment explanation
Indices: 231154994--231155041 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
231154984 ATACATAAAC
* * *
231154994 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
231155019 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
231155042 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:231162794 original size:31 final size:31
Alignment explanation
Indices: 231162736--231162857 Score: 198
Period size: 31 Copynumber: 4.1 Consensus size: 31
231162726 CCCTTTCATA
231162736 TTTCATATTTCATAATACT--G--GAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
231162763 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
231162794 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
231162825 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
231162856 TT
1 TT
231162858 ACTGTAAACG
Statistics
Matches: 90, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
27 19 0.21
29 1 0.01
31 70 0.78
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:231163095 original size:24 final size:24
Alignment explanation
Indices: 231163049--231163120 Score: 85
Period size: 24 Copynumber: 3.0 Consensus size: 24
231163039 GCTTTATCAT
*
231163049 ATAACTGGAGGCC-TAGCCTCTTTTA
1 ATAACTGG-GGCCAAAGCC-CTTTTA
*
231163074 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTTA
231163098 ATAACTGGGG-CATAAGCCCTTTT
1 ATAACTGGGGCCA-AAGCCCTTTT
231163121 TCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 2 0.05
24 28 0.67
25 12 0.29
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTTA
Found at i:231163196 original size:20 final size:20
Alignment explanation
Indices: 231163171--231163230 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
231163161 TATGATTACC
231163171 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
231163191 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
231163211 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
231163231 CCATTTATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:231163303 original size:25 final size:25
Alignment explanation
Indices: 231163271--231163318 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
231163261 ATACATAAAC
* * *
231163271 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
231163296 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
231163319 CATATTTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:231166136 original size:16 final size:16
Alignment explanation
Indices: 231166115--231166145 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
231166105 TGGTGACCGT
231166115 GAATTACAAGTTAAAC
1 GAATTACAAGTTAAAC
231166131 GAATTACAAGTTAAA
1 GAATTACAAGTTAAA
231166146 AGCTAAATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.13, T:0.26
Consensus pattern (16 bp):
GAATTACAAGTTAAAC
Found at i:231167748 original size:32 final size:32
Alignment explanation
Indices: 231167707--231167774 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
231167697 ATAGATTTTG
231167707 AATGATGCCATTATTGAATGCTTGGTTGTTTA
1 AATGATGCCATTATTGAATGCTTGGTTGTTTA
* *
231167739 AATGATGCCATTGTTGAATGGTTGGTTGTTTA
1 AATGATGCCATTATTGAATGCTTGGTTGTTTA
231167771 AATG
1 AATG
231167775 TTTAATGATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (32 bp):
AATGATGCCATTATTGAATGCTTGGTTGTTTA
Found at i:231168492 original size:22 final size:22
Alignment explanation
Indices: 231168467--231168517 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
231168457 TGGCTCATTG
231168467 GAACTTATTGTTCAGCTCGATA
1 GAACTTATTGTTCAGCTCGATA
*
231168489 GAACTTATTGTTTAGCTCGATA
1 GAACTTATTGTTCAGCTCGATA
*
231168511 GAGCTTA
1 GAACTTA
231168518 CCATTTCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (22 bp):
GAACTTATTGTTCAGCTCGATA
Found at i:231168578 original size:25 final size:25
Alignment explanation
Indices: 231168523--231168587 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
231168513 GCTTACCATT
*
231168523 TCAGCTCAATAGAGCTTACTGTCCA
1 TCAGCTCAAGAGAGCTTACTGTCCA
231168548 TCAGCTCAAGAGGAGCTTACTGAT-CA
1 TCAGCTCAAGA-GAGCTTACTG-TCCA
*
231168574 T-AGCTCAAAAGAGC
1 TCAGCTCAAGAGAGC
231168588 GTATATGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 18 0.50
26 13 0.36
27 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (25 bp):
TCAGCTCAAGAGAGCTTACTGTCCA
Found at i:231172919 original size:40 final size:40
Alignment explanation
Indices: 231172770--231172953 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
231172760 TCGAATGATG
* * *
231172770 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
231172810 TCCGGACTAAGAT-CCGAAGGCATTCGTGTGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
231172850 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
231172890 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
231172931 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
231172954 AGAACGAGTA
Statistics
Matches: 126, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.93
41 8 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:231172962 original size:80 final size:79
Alignment explanation
Indices: 231172823--231172978 Score: 176
Period size: 80 Copynumber: 2.0 Consensus size: 79
231172813 GGACTAAGAT
* * **
231172823 CCGAAGGCATTCGTGTGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTAGAACGAG-TAGCT
231172887 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
231172903 CCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTAGAACGAGTAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTAGAACGAGTAG
*
231172965 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
231172979 ACTCCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
79 11 0.17
80 52 0.80
81 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTAGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:231175806 original size:27 final size:26
Alignment explanation
Indices: 231175769--231175881 Score: 120
Period size: 26 Copynumber: 4.3 Consensus size: 26
231175759 CAGCATGGCT
** *
231175769 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
231175795 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
231175823 CCAGAACAGATATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* * * *
231175849 CCAGATCAAAT-ATTTGTGCATAGCCA
1 CCAGAACAGATAATGTG-GCAGAGCCA
231175875 CCAGAAC
1 CCAGAAC
231175882 GCTTCCTCCA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.04
26 40 0.54
27 17 0.23
28 14 0.19
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:231175833 original size:54 final size:52
Alignment explanation
Indices: 231175769--231175881 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 52
231175759 CAGCATGGCT
* * *
231175769 CCAGAACAGATAATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAAATAATCGT-GCAGAGCCA
* * * * *
231175823 CCAGAACAGATATTGTGGCAGAGCCACCAGATCAAATATTTGTGCATAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATCAAATAATCGTGCAGAGCCA
231175875 CCAGAAC
1 CCAGAAC
231175882 GCTTCCTCCA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
52 15 0.29
53 8 0.16
54 28 0.55
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (52 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAAATAATCGTGCAGAGCCA
Found at i:231177512 original size:26 final size:26
Alignment explanation
Indices: 231177481--231177587 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
231177471 TGAAATGCCC
*
231177481 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
231177507 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
231177533 ATCAT-GAAAATTTGCCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
231177558 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
231177584 ATCA
1 ATCA
231177588 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 22 0.30
26 51 0.70
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:231177557 original size:51 final size:52
Alignment explanation
Indices: 231177481--231177587 Score: 180
Period size: 51 Copynumber: 2.1 Consensus size: 52
231177471 TGAAATGCCC
*
231177481 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
231177533 ATCAT-GAAAATTTGCCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
231177584 ATCA
1 ATCA
231177588 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 47 0.90
52 5 0.10
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (52 bp):
ATCATGGAAAATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:231182764 original size:27 final size:26
Alignment explanation
Indices: 231182727--231182841 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
231182717 AGCATGGCTG
* *
231182727 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
231182753 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
231182781 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
231182808 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
231182835 CCAGAAC
1 CCAGAAC
231182842 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:231182786 original size:54 final size:54
Alignment explanation
Indices: 231182727--231182841 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
231182717 AGCATGGCTG
*
231182727 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
231182781 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
231182835 CCAGAAC
1 CCAGAAC
231182842 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:231184495 original size:25 final size:25
Alignment explanation
Indices: 231184442--231184544 Score: 174
Period size: 25 Copynumber: 4.2 Consensus size: 25
231184432 CATGAAATTC
231184442 ATCAT-GAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
231184466 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAA-CCATT
*
231184491 ATCATGGAATATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
231184516 ATCATGGAACATTTACCTAACCATT
1 ATCATGGAACATTTACCTAACCATT
231184541 ATCA
1 ATCA
231184545 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
24 19 0.25
25 43 0.57
26 13 0.17
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:231185656 original size:19 final size:19
Alignment explanation
Indices: 231185606--231185658 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 19
231185596 TGTTTTATAT
*
231185606 TTTATGTTCAATTTAGTCC
1 TTTATGTTCAATTTACTCC
*
231185625 TTT-TGTT-AATTTACTGC
1 TTTATGTTCAATTTACTCC
*
231185642 TTTATTTTCAATTTACT
1 TTTATGTTCAATTTACT
231185659 TGTTTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 11 0.38
18 7 0.24
19 11 0.38
ACGTcount: A:0.21, C:0.13, G:0.08, T:0.58
Consensus pattern (19 bp):
TTTATGTTCAATTTACTCC
Found at i:231185705 original size:18 final size:19
Alignment explanation
Indices: 231185675--231185725 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
231185665 TATTTTCTGT
*
231185675 TATT-TATTAATTATAATA
1 TATTATATTTATTATAATA
*
231185693 T-TTATATTTATTAT-ATT
1 TATTATATTTATTATAATA
*
231185710 TATTGTATTTATTATA
1 TATTATATTTATTATA
231185726 TGTCTTAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (19 bp):
TATTATATTTATTATAATA
Found at i:231185706 original size:9 final size:9
Alignment explanation
Indices: 231185694--231185726 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
231185684 ATTATAATAT
231185694 TTATATTTA
1 TTATATTTA
231185703 TTATATTTA
1 TTATATTTA
*
231185712 TTGTATTTA
1 TTATATTTA
231185721 TTATAT
1 TTATAT
231185727 GTCTTAGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
TTATATTTA
Found at i:231185708 original size:15 final size:16
Alignment explanation
Indices: 231185675--231185726 Score: 61
Period size: 15 Copynumber: 3.2 Consensus size: 16
231185665 TATTTTCTGT
* *
231185675 TATTTATTAATTATAA
1 TATTTATTATTTATTA
231185691 TATTTA-TATTTATTA
1 TATTTATTATTTATTA
231185706 TATTTATTGTATTTATTA
1 TATTTA-T-TATTTATTA
231185724 TAT
1 TAT
231185727 GTCTTAGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 13 0.42
16 6 0.19
18 12 0.39
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTTATTATTTATTA
Found at i:231186178 original size:12 final size:12
Alignment explanation
Indices: 231186161--231186200 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
231186151 TTTTCGTACC
*
231186161 TTATTATATTTA
1 TTATTATATCTA
231186173 TTATTATATCTA
1 TTATTATATCTA
231186185 TTATT-T-TC-A
1 TTATTATATCTA
231186194 TTATTAT
1 TTATTAT
231186201 CACTTATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 6 0.23
10 3 0.12
11 1 0.04
12 16 0.62
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTATATCTA
Found at i:231186372 original size:22 final size:23
Alignment explanation
Indices: 231186347--231186392 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
231186337 TTTACTATTT
*
231186347 TATGTA-TAGATTTCAAATACTA
1 TATGTAGTAGATTTCAAACACTA
* *
231186369 TATGTAGTATATTTCTAACACTA
1 TATGTAGTAGATTTCAAACACTA
231186392 T
1 T
231186393 TACTATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (23 bp):
TATGTAGTAGATTTCAAACACTA
Found at i:231187780 original size:134 final size:137
Alignment explanation
Indices: 231187595--231187878 Score: 520
Period size: 134 Copynumber: 2.1 Consensus size: 137
231187585 TATTGGGCCT
**
231187595 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
231187660 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
231187724 CATATGC
131 CATATGC
231187731 AAGCCCATTTGGGTAACAGT-GTACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
231187794 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
231187859 CATATGC
131 CATATGC
231187866 AAGCCCATTTGGG
1 AAGCCCATTTGGG
231187879 GAGACTACTC
Statistics
Matches: 144, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
134 93 0.65
135 33 0.23
136 18 0.12
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:231188163 original size:25 final size:26
Alignment explanation
Indices: 231188126--231188177 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
231188116 TCAAACATGC
231188126 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
* * *
231188152 ATTTCGGT-AATTTATCTCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAGGGGT
231188177 A
1 A
231188178 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAGGGGT
Found at i:231189728 original size:25 final size:25
Alignment explanation
Indices: 231189656--231189762 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 25
231189646 CATGAAATTC
231189656 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
231189682 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
231189708 TTATCATGGAA-ATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
*
231189732 TTATCATGGAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
231189757 TTATCA
1 TTATCA
231189763 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
24 14 0.18
25 29 0.37
26 36 0.46
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:231189745 original size:50 final size:51
Alignment explanation
Indices: 231189656--231189762 Score: 173
Period size: 50 Copynumber: 2.1 Consensus size: 51
231189646 CATGAAATTC
231189656 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAA-CCA
* *
231189708 TTATCATGGAA-ATTTACCTAA-CCATTATCATGGAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCA
231189757 TTATCA
1 TTATCA
231189763 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
49 9 0.17
50 24 0.45
51 10 0.19
52 10 0.19
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (51 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCA
Found at i:231193704 original size:133 final size:137
Alignment explanation
Indices: 231193463--231193745 Score: 511
Period size: 133 Copynumber: 2.1 Consensus size: 137
231193453 TATTGGGCCT
**
231193463 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
231193528 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
231193592 CATATGC
131 CATATGC
231193599 AAGCCCATTTGGGTAACAGTGGTACTGGGCCA-AGCCCTTTTCAGATTACAATAAACT-GGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
231193662 AG-CCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
231193726 CATATGC
131 CATATGC
231193733 AAGCCCATTTGGG
1 AAGCCCATTTGGG
231193746 GAGACTACTC
Statistics
Matches: 143, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
133 58 0.41
134 30 0.21
135 25 0.17
136 30 0.21
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:231194273 original size:26 final size:26
Alignment explanation
Indices: 231194237--231194289 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
231194227 CGTCCAATTT
231194237 TGCAGCTTACCAAAAACATTAATCGA
1 TGCAGCTTACCAAAAACATTAATCGA
231194263 TGCAGCTTACCAAAAACATTAATCGA
1 TGCAGCTTACCAAAAACATTAATCGA
231194289 T
1 T
231194290 TTACCTCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.25
Consensus pattern (26 bp):
TGCAGCTTACCAAAAACATTAATCGA
Found at i:231195585 original size:25 final size:25
Alignment explanation
Indices: 231195528--231195635 Score: 171
Period size: 25 Copynumber: 4.2 Consensus size: 25
231195518 GAATGAATTC
231195528 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
231195554 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
* *
231195579 TTATCATGGAATATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
*
231195604 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
231195630 TTATCA
1 TTATCA
231195636 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 49 0.63
26 29 0.37
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:231199370 original size:45 final size:46
Alignment explanation
Indices: 231199306--231199480 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
231199296 CATGTAACCC
*
231199306 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
231199351 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
231199401 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
231199444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
231199481 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:231199471 original size:93 final size:92
Alignment explanation
Indices: 231199313--231199483 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
231199303 CCCCCATAAG
*
231199313 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
231199378 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
231199405 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
231199470 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
231199484 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:231202095 original size:46 final size:46
Alignment explanation
Indices: 231202045--231202220 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
231202035 TGGTTGAGCA
231202045 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
231202091 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
231202136 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
231202184 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
231202221 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:231202201 original size:93 final size:93
Alignment explanation
Indices: 231202042--231202213 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
231202032 GGATGGTTGA
* * *
231202042 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
231202107 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
231202135 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
231202200 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
231202214 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:231205173 original size:15 final size:15
Alignment explanation
Indices: 231205134--231205210 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
231205124 GTATCTTGGG
*
231205134 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
231205149 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
231205164 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
*
231205177 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
231205192 TTT-TTTATTC-GGT
1 TTTCTTTATTCTGGA
231205205 TTTCTT
1 TTTCTT
231205211 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
12 2 0.04
13 12 0.24
14 9 0.18
15 28 0.55
ACGTcount: A:0.10, C:0.17, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:231210344 original size:19 final size:19
Alignment explanation
Indices: 231210311--231210356 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
231210301 GCTATAGATG
231210311 GGCCCAAGGCCTATTACTT
1 GGCCCAAGGCCTATTACTT
231210330 GGCCCAAGGCCTATTACTT
1 GGCCCAAGGCCTATTACTT
231210349 GGCCCAAG
1 GGCCCAAG
231210357 TGGGCCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.22
Consensus pattern (19 bp):
GGCCCAAGGCCTATTACTT
Found at i:231213054 original size:57 final size:57
Alignment explanation
Indices: 231212928--231213073 Score: 165
Period size: 57 Copynumber: 2.6 Consensus size: 57
231212918 CCACATATCA
* * * *
231212928 TATAACAGGATTACTTGTCCAAGCTAAATCCTATTTTCAACATATGCTTACAAGAGCT
1 TATATCAGGATTACCTGTCCAGGCTAAATCCTATTGT-AACATATGCTTACAAGAGCT
* *
231212986 TA-ATCAAGATTACCTGTCCGGGCTAAATCCTATCTGT-ACATATGC-T-CAAGAGGGCT
1 TATATCAGGATTACCTGTCCAGGCTAAATCCTAT-TGTAACATATGCTTACAAGA--GCT
*
231213042 TATATCAGGATTACCAGTCCAGGCTAAATCCT
1 TATATCAGGATTACCTGTCCAGGCTAAATCCT
231213074 TTCTCTAATG
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
54 5 0.07
55 1 0.01
56 13 0.17
57 52 0.69
58 4 0.05
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.30
Consensus pattern (57 bp):
TATATCAGGATTACCTGTCCAGGCTAAATCCTATTGTAACATATGCTTACAAGAGCT
Found at i:231222479 original size:19 final size:19
Alignment explanation
Indices: 231222459--231222499 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
231222449 TTGTTTTGCA
*
231222459 TTCATTCATTTGCATTACAT
1 TTCA-TCATGTGCATTACAT
*
231222479 TTCATCATGTGCATTAAAT
1 TTCATCATGTGCATTACAT
231222498 TT
1 TT
231222500 TGTGAAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (19 bp):
TTCATCATGTGCATTACAT
Found at i:231230500 original size:66 final size:66
Alignment explanation
Indices: 231230388--231230553 Score: 219
Period size: 66 Copynumber: 2.5 Consensus size: 66
231230378 CATTCATACA
* * *
231230388 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTTAATCATAGCATCTTAGTTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
*
231230453 T
66 C
* * * * *
231230454 TCATTCATAACACGTTTAATTAAGAGCATTTGATTCATTTCGATCATATCATCCTAATTATTTGA
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
231230519 C
66 C
* *
231230520 ACATTCAT--CACATCTAGTTAGGAGCATTTGATTC
1 TCATTCATAACACATCTAATTAGGAGCATTTGATTC
231230554 GACCATAGCA
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
64 22 0.26
66 64 0.74
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.40
Consensus pattern (66 bp):
TCATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCAATCATAGCATCCTAATTATTTGA
C
Found at i:231230966 original size:42 final size:42
Alignment explanation
Indices: 231230912--231231061 Score: 149
Period size: 42 Copynumber: 3.5 Consensus size: 42
231230902 GAACCTTAAA
*
231230912 TCCCTAATCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
* * * * * * **
231230954 TCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGAACCTTAAA
1 TCCCTAAGCAGTAG-GGTAACAGGTTG-AATTGCAG-ATCTTATC
** *
231230998 TCCCTAAATAGTAGGGTAACAGGTTGAATTACAGATCTTATC
1 TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
*
231231040 TCCCTAAGCAGTAGGGAAACAG
1 TCCCTAAGCAGTAGGGTAACAG
231231062 ATCGAAGACA
Statistics
Matches: 81, Mismatches: 23, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
42 43 0.53
43 15 0.19
44 23 0.28
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (42 bp):
TCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATC
Found at i:231230967 original size:86 final size:86
Alignment explanation
Indices: 231230866--231231140 Score: 356
Period size: 86 Copynumber: 3.2 Consensus size: 86
231230856 AGTGATTTTG
*
231230866 TCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
*
231230931 CAGGTTGAATTGCAGATCTTA
66 CAGGTTGAATTACAGATCTTA
* *
231230952 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAATCCCTAAAT-AGTAGGGTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCT-AATCAGTAGGGTA
231231016 ACAGGTTGAATTACAGATCTTA
65 ACAGGTTGAATTACAGATCTTA
* * *** ** *
231231038 TCTCCCTAAGCAGTAG-GGAAACAGATCGAAGACAAAGGGGCTTAACCCCCTAAGCAGTAGGGTA
1 TCTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTA
* * *
231231102 ACAGGCTAAATTTATAGATCTTA
65 ACAGGTTGAA-TTACAGATCTTA
* *
231231125 ACCCCCTAAGCAGTAG
1 TCTCCCTAAGCAGTAG
231231141 GGAAACGGAT
Statistics
Matches: 166, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
85 4 0.02
86 134 0.81
87 28 0.17
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (86 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAATCCCTAATCAGTAGGGTAA
CAGGTTGAATTACAGATCTTA
Found at i:231231003 original size:44 final size:44
Alignment explanation
Indices: 231230868--231231004 Score: 136
Period size: 44 Copynumber: 3.2 Consensus size: 44
231230858 TGATTTTGTC
* * *
231230868 TCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
* * * * * * * **
231230912 TCCCTAATCAGTAG-GGTAACAGGTTG-AATTGCAG-ATCTTATC
1 TCCCTAAGCAGTAGTGG-AGCAGATCGAAAATGAAGAACCTTAAA
231230954 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
231230998 TCCCTAA
1 TCCCTAA
231231005 ATAGTAGGGT
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
42 24 0.35
43 14 0.21
44 30 0.44
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (44 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAAATGAAGAACCTTAAA
Found at i:231231153 original size:87 final size:86
Alignment explanation
Indices: 231230913--231231183 Score: 253
Period size: 86 Copynumber: 3.1 Consensus size: 86
231230903 AACCTTAAAT
* * * * * * *
231230913 CCCTAATCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGA
** * **
231230977 TCGAA-AATGAA-GAACCTTAAAT
65 TCGAAGAA--AAGGGGCTTTAACC
** * * * *
231230999 CCCTAAATAGTAGGGTAACAGGTTGAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGAT
1 CCCTAAGCAGTAGGGTAACAGGCTAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
231231064 CGAAGACAAAGGGGC-TTAACC
66 CGAAGA-AAAGGGGCTTTAACC
* *
231231085 CCCTAAGCAGTAGGGTAACAGGCTAAATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACGGA
1 CCCTAAGCAGTAGGGTAACAGGCTAAA-TTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
** *
231231150 TCGAAGATGATGGGCTTTAACC
65 TCGAAGAAAAGGGGCTTTAACC
*
231231172 CCCTAAGTAGTA
1 CCCTAAGCAGTA
231231184 AGATCTTGCC
Statistics
Matches: 159, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
85 2 0.01
86 96 0.60
87 60 0.38
88 1 0.01
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (86 bp):
CCCTAAGCAGTAGGGTAACAGGCTAAATTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGAT
CGAAGAAAAGGGGCTTTAACC
Found at i:231232923 original size:17 final size:17
Alignment explanation
Indices: 231232897--231232930 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
231232887 ATTTATTTAC
231232897 TATGTTCTATT-TTATT
1 TATGTTCTATTATTATT
231232913 TATGCTTCTATTATTATT
1 TATG-TTCTATTATTATT
231232931 ATTGCCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (17 bp):
TATGTTCTATTATTATT
Found at i:231233068 original size:3 final size:3
Alignment explanation
Indices: 231233057--231233102 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
231233047 AAAAAATCTG
*
231233057 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
231233103 AATTGTTGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:231233481 original size:3 final size:3
Alignment explanation
Indices: 231233473--231233514 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
231233463 TAACGCCTCT
* * *
231233473 TTA TTA TTA TTA CTA TT- GTA TTA TTA CTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
231233515 ATTTTCCCTT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:231233496 original size:14 final size:15
Alignment explanation
Indices: 231233477--231233517 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
231233467 GCCTCTTTAT
231233477 TATTATTACTATT-G
1 TATTATTACTATTAG
*
231233491 TATTATTACTATTAT
1 TATTATTACTATTAG
231233506 TATTATTA-TATT
1 TATTATTACTATT
231233518 TTCCCTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAG
Found at i:231235726 original size:53 final size:54
Alignment explanation
Indices: 231235623--231235738 Score: 132
Period size: 54 Copynumber: 2.1 Consensus size: 54
231235613 GCAGAAAAGA
*
231235623 AAAAAATAAATCATGGAAGAAAATTATAAATTTTAATATAACTTTTTGAA-TTTT
1 AAAAAATTAATCATGGAAGAAAATTATAAATTTTAATAT-ACTTTTTGAATTTTT
* *
231235677 AAAAAATTAATC-TCGGAAGAAATTTAT-AATTTGTAATAT-TTTTTATGAATTTTT
1 AAAAAATTAATCAT-GGAAGAAAATTATAAATTT-TAATATACTTTT-TGAATTTTT
*
231235731 AAATAATT
1 AAAAAATT
231235739 GTAATAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
52 4 0.07
53 10 0.19
54 40 0.74
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.42
Consensus pattern (54 bp):
AAAAAATTAATCATGGAAGAAAATTATAAATTTTAATATACTTTTTGAATTTTT
Found at i:231236509 original size:7 final size:6
Alignment explanation
Indices: 231236475--231236499 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
231236465 TATAAAAAAA
231236475 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
231236500 TTATTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Done.