Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 735 of 770
Found at i:232542890 original size:80 final size:80
Alignment explanation
Indices: 232542750--232542917 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
232542740 CGGAATACAA
* *
232542750 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
232542815 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
232542830 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
232542893 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
232542910 CCGGATAT
1 CCGGATAT
232542918 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:232550799 original size:40 final size:40
Alignment explanation
Indices: 232550754--232550921 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
232550744 CGGAATACAA
232550754 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
232550794 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
232550834 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
232550874 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
232550914 CCGGATAT
1 CCGGATAT
232550922 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:232550894 original size:80 final size:80
Alignment explanation
Indices: 232550754--232550921 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
232550744 CGGAATACAA
* *
232550754 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
232550819 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
232550834 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
232550897 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
232550914 CCGGATAT
1 CCGGATAT
232550922 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:232552814 original size:40 final size:40
Alignment explanation
Indices: 232552770--232552908 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
232552760 GGATATAACG
232552770 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
* *
232552810 ACTCGCTCGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * * * *
232552850 ACTCGCACAAATGCATTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * *
232552889 ACTCGCACGAACGCCTTCGG
1 ACTCGCTCAAATGCCTTCGG
232552909 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.37
40 48 0.56
41 6 0.07
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:232552891 original size:79 final size:81
Alignment explanation
Indices: 232552770--232552961 Score: 214
Period size: 79 Copynumber: 2.4 Consensus size: 81
232552760 GGATATAACG
* ** * *
232552770 ACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCTCGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTC-GGATC
* *
232552833 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
* *
232552850 ACTCGCACAAATGCATTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAACGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
** *
232552913 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
232552929 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
232552962 CATCATTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.03
79 51 0.54
80 40 0.43
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAACGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:232563912 original size:41 final size:41
Alignment explanation
Indices: 232563855--232564004 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
232563845 ATCGGGTTTA
232563855 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
232563896 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
232563937 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
232563977 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
232564005 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:232571173 original size:41 final size:41
Alignment explanation
Indices: 232571116--232571265 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
232571106 TCGGGGTTTA
232571116 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
232571157 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
232571198 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
232571238 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
232571266 TGAGTCAGCG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:232579993 original size:40 final size:40
Alignment explanation
Indices: 232579830--232580013 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
232579820 CGAATGATGC
* *
232579830 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
232579870 CCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
232579909 CCGGACTAAGAT-CCGAAGGAATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
232579949 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGCTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* *
232579989 CCGGGCTATGTCCCGAAGGTATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
232580014 AACGTGTAGC
Statistics
Matches: 127, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 31 0.24
40 93 0.73
41 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:232583562 original size:66 final size:68
Alignment explanation
Indices: 232583486--232583672 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
232583476 TAGTACCACT
*
232583486 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
232583548 CACG
65 CACG
232583552 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
232583617 ATCACG
63 ATCACG
232583623 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
232583673 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:232583597 original size:71 final size:71
Alignment explanation
Indices: 232583509--232583672 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
232583499 CGATTTGTCT
232583509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232583574 CTTTCA
66 CTTTCA
232583580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232583645 CTTTCA
66 CTTTCA
232583651 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
232583673 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:232583710 original size:71 final size:70
Alignment explanation
Indices: 232583509--232583706 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
232583499 CGATTTGTCT
* * *
232583509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
232583574 CTTTCA
65 CTTTCA
* * *
232583580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
232583645 CTTTCA
65 CTTTCA
* *
232583651 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
232583707 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:232591130 original size:66 final size:68
Alignment explanation
Indices: 232591054--232591240 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
232591044 TAGTACCACT
*
232591054 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
232591116 CACG
65 CACG
232591120 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
232591185 ATCACG
63 ATCACG
232591191 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
232591241 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:232591165 original size:71 final size:71
Alignment explanation
Indices: 232591077--232591240 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
232591067 CGATTTGTCT
232591077 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232591142 CTTTCA
66 CTTTCA
232591148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232591213 CTTTCA
66 CTTTCA
232591219 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
232591241 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:232591278 original size:71 final size:70
Alignment explanation
Indices: 232591077--232591274 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
232591067 CGATTTGTCT
* * *
232591077 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
232591142 CTTTCA
65 CTTTCA
* * *
232591148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
232591213 CTTTCA
65 CTTTCA
* *
232591219 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
232591275 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:232593096 original size:15 final size:16
Alignment explanation
Indices: 232593076--232593110 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
232593066 ACCGAAAATA
232593076 AAAAGA-TTTTATTTG
1 AAAAGATTTTTATTTG
*
232593091 AAAAGATTTTTATTTT
1 AAAAGATTTTTATTTG
232593107 AAAA
1 AAAA
232593111 CTATTGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (16 bp):
AAAAGATTTTTATTTG
Found at i:232594449 original size:28 final size:28
Alignment explanation
Indices: 232594403--232594471 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
232594393 TTTAAAACCC
*
232594403 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
232594430 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
232594458 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
232594472 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:232600457 original size:40 final size:40
Alignment explanation
Indices: 232600400--232600511 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
232600390 TATAACCACA
*
232600400 TGCACGAATGCCCTCGGGTCTTAGCCCGGATAGAA-CGACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACT
*
232600440 TGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACT
1 TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACT
* *
232600480 AGCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
232600512 TAATTTCCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
39 4 0.06
40 59 0.92
41 1 0.02
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (40 bp):
TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACT
Found at i:232600535 original size:40 final size:40
Alignment explanation
Indices: 232600388--232600552 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
232600378 AATACAACCA
* * *
232600388 GATATAACCA-CATGCACGAATGCCCTCGGGTCTTAGCCCG
1 GATATAATCACCA-GCACAAATGCCTTCGGGTCTTAGCCCG
* ** *
232600428 GATAGAA-CGACTTGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAATC-ACCAGCACAAATGCCTTCGGGTCTTAGCCCG
* * * * *
232600468 GATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
** * * * *
232600508 GATATAATTTCCAGCATAAATGTCTTCGGGACTTAGCGCG
1 GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
232600548 GATAT
1 GATAT
232600553 CATTCAATTG
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GATATAATCACCAGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:232608221 original size:39 final size:39
Alignment explanation
Indices: 232608167--232608319 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
232608157 GAATGTTCGA
*
232608167 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
232608206 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
232608245 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
232608284 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
232608320 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:232608335 original size:40 final size:39
Alignment explanation
Indices: 232608168--232608349 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
232608158 AATGTTCGAG
* *
232608168 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
232608207 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
232608246 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
232608285 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
232608325 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
232608350 TGTTTGAACG
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:232614116 original size:40 final size:38
Alignment explanation
Indices: 232614029--232614189 Score: 180
Period size: 39 Copynumber: 4.1 Consensus size: 38
232614019 TGAATGATAC
* * *
232614029 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATATAT
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTGTTATAT
*
232614068 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAG-TGTTATAT
* * *
232614108 CCGGGCTAAGACCCGAAGGCATTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTGTGCTAGTGT--TATAT
* *
232614147 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTGTTATAT
232614186 CCGG
1 CCGG
232614190 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 3 0.03
39 60 0.58
40 39 0.38
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTGTTATAT
Found at i:232614160 original size:79 final size:78
Alignment explanation
Indices: 232614029--232614189 Score: 200
Period size: 79 Copynumber: 2.1 Consensus size: 78
232614019 TGAATGATAC
* * * *
232614029 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATATATCCGGGCTAAGACCCGAAGGC-ATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACAAATCCGGGCTAAGACCCGAAGGCAATT-G
232614093 TGCGAGTTGTTATAT
65 TGCGAG-TGTTATAT
* * *
232614108 CCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGA-CAAATCCGGGCTAAGACCCGAAGGCAATTG
**
232614172 TGCTTGTGTTATAT
65 TGCGAGTGTTATAT
232614186 CCGG
1 CCGG
232614190 TTAAATTCCG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
78 21 0.30
79 47 0.66
80 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACAAATCCGGGCTAAGACCCGAAGGCAATTGT
GCGAGTGTTATAT
Found at i:232619551 original size:40 final size:39
Alignment explanation
Indices: 232619401--232619553 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
232619391 GAATGTTCGA
*
232619401 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
232619440 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
232619479 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
232619518 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
232619554 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:232619569 original size:40 final size:39
Alignment explanation
Indices: 232619402--232619584 Score: 249
Period size: 39 Copynumber: 4.6 Consensus size: 39
232619392 AATGTTCGAG
* *
232619402 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
232619441 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
232619480 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
232619519 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
232619559 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
232619585 GTTTGAACGA
Statistics
Matches: 129, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.68
40 41 0.32
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:232624490 original size:56 final size:56
Alignment explanation
Indices: 232624404--232624509 Score: 167
Period size: 56 Copynumber: 1.9 Consensus size: 56
232624394 GTAACCTCAT
* * *
232624404 ATATCGATGCCAACATACTAGACGTGGTCTTACTCGCACACATATATCGAAATCAC
1 ATATCGATGCCAACATACTAAACATCGTCTTACTCGCACACATATATCGAAATCAC
* *
232624460 ATATCGATGCCAACGTATTAAACATCGTCTTACTCGCACACATATATCGA
1 ATATCGATGCCAACATACTAAACATCGTCTTACTCGCACACATATATCGA
232624510 TGTCGTGGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (56 bp):
ATATCGATGCCAACATACTAAACATCGTCTTACTCGCACACATATATCGAAATCAC
Found at i:232632056 original size:28 final size:28
Alignment explanation
Indices: 232632021--232632079 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
232632011 CTAGGGTATA
232632021 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
232632049 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
232632077 TCG
1 TCG
232632080 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:232633726 original size:20 final size:20
Alignment explanation
Indices: 232633703--232633740 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
232633693 CACATCCAAA
*
232633703 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
232633723 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
232633741 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:232640013 original size:28 final size:28
Alignment explanation
Indices: 232639967--232640035 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
232639957 TTTAAAACCC
*
232639967 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
232639994 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
232640022 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
232640036 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:232641683 original size:20 final size:20
Alignment explanation
Indices: 232641660--232641697 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
232641650 CACATCCAAA
*
232641660 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
232641680 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
232641698 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:232647084 original size:28 final size:27
Alignment explanation
Indices: 232647021--232647090 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
232647011 ATAGTGAGTC
232647021 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
232647048 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
232647076 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
232647091 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:232655070 original size:28 final size:27
Alignment explanation
Indices: 232655007--232655076 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
232654997 ATAGTGAGTC
232655007 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
232655034 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
232655062 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
232655077 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:232663029 original size:28 final size:27
Alignment explanation
Indices: 232662966--232663035 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
232662956 ATAGTGAGTC
232662966 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
232662993 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
232663021 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
232663036 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:232668220 original size:42 final size:42
Alignment explanation
Indices: 232668173--232668278 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
232668163 TATTGGTCTC
232668173 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
232668215 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
232668257 GGCAC-AAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
232668279 ATTGTATAGC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
41 16 0.25
42 47 0.75
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:232668351 original size:29 final size:29
Alignment explanation
Indices: 232668283--232668415 Score: 200
Period size: 29 Copynumber: 4.6 Consensus size: 29
232668273 TTTAAAATTG
* *
232668283 TATAGCACTAAGTGTGCGAGTTTG--ATTA
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
*
232668311 TACAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
232668340 TATAGCACTAAGTGTGC-AGCTGAAAATTA
1 TATAGCACTAAGTGTGCGAGCTGAAAA-TA
232668369 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
232668398 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
232668416 GATTCACTAT
Statistics
Matches: 97, Mismatches: 4, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
27 2 0.02
28 28 0.29
29 58 0.60
30 9 0.09
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:232676273 original size:42 final size:42
Alignment explanation
Indices: 232676226--232676325 Score: 200
Period size: 42 Copynumber: 2.4 Consensus size: 42
232676216 TATTGGTCTC
232676226 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
232676268 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
232676310 GGCACTAAGTGTGCGG
1 GGCACTAAGTGTGCGG
232676326 TTTAAAATTG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.29, C:0.15, G:0.35, T:0.21
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:232676344 original size:29 final size:30
Alignment explanation
Indices: 232676311--232676469 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
232676301 GACAAGATTG
* * * *
232676311 GCACTAAGTGTGCG-GTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
* *
232676340 GCACTAAGTGTGCGAGTTTG---ATTATACA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
232676368 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
232676397 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
232676427 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
232676456 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
232676470 GATTCACTAT
Statistics
Matches: 120, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 62 0.52
30 31 0.26
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:232676438 original size:59 final size:57
Alignment explanation
Indices: 232676311--232676469 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
232676301 GACAAGATTG
* * * * *
232676311 GCACTAAGTGTGCG-GTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATACA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATACA
*
232676368 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATACA
232676427 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
232676470 GATTCACTAT
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
56 2 0.02
57 34 0.37
58 6 0.07
59 50 0.54
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATACA
Found at i:232684374 original size:40 final size:42
Alignment explanation
Indices: 232684291--232684387 Score: 180
Period size: 40 Copynumber: 2.4 Consensus size: 42
232684281 TATTGGTCTC
232684291 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
232684333 GGCACTAAGTGTGCGGGTATAAA-GGA-ACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
232684373 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
232684388 ATTTAAAATT
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 29 0.53
41 3 0.05
42 23 0.42
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:232684465 original size:29 final size:29
Alignment explanation
Indices: 232684374--232684529 Score: 196
Period size: 29 Copynumber: 5.5 Consensus size: 29
232684364 GACAAGATTG
* * *
232684374 GCACTAAGTGTGCGA-TTTAAAAT-TGTA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
* * *
232684401 -CAGCTAAGTGTGCGAGTTTG--ATTATACA
1 GCA-CTAAGTGTGCGAG-CTGAAAATATATA
232684429 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
*
232684458 GCACTAAGTGTGCGAGCTGAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
232684487 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
232684516 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
232684530 GATTCATTAT
Statistics
Matches: 113, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.02
27 16 0.14
28 15 0.13
29 80 0.71
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:232685976 original size:40 final size:41
Alignment explanation
Indices: 232685921--232686021 Score: 177
Period size: 41 Copynumber: 2.5 Consensus size: 41
232685911 GGGTGTTACA
*
232685921 GGCTAAGTCCTGAAGAGCATTCG-TGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTTGCTAGTGATATATCCG
*
232685961 GGCTAAGTCCCGAAGAGCATTCGTTGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTTGCTAGTGATATATCCG
232686002 GGCTAAGTCCCGAAGAGCAT
1 GGCTAAGTCCCGAAGAGCAT
232686022 NNNNNNNNNN
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
40 22 0.38
41 36 0.62
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
GGCTAAGTCCCGAAGAGCATTCGTTGCTAGTGATATATCCG
Found at i:232688855 original size:79 final size:82
Alignment explanation
Indices: 232688715--232688899 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
232688705 TCGAATGATG
* * *
232688715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
232688779 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
232688795 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
232688857 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
232688875 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
232688900 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:232688907 original size:40 final size:40
Alignment explanation
Indices: 232688716--232688907 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
232688706 CGAATGATGT
* * * * *
232688716 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
232688756 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
232688796 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
232688835 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
232688875 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
232688908 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:232688930 original size:79 final size:79
Alignment explanation
Indices: 232688715--232688932 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
232688705 TCGAATGATG
* * * * ** *
232688715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
232688778 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
232688795 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
232688860 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
232688875 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
232688933 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:232696907 original size:79 final size:82
Alignment explanation
Indices: 232696767--232696951 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
232696757 TCGAATGATG
* * *
232696767 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
232696831 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
232696847 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
232696909 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
232696927 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
232696952 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:232696959 original size:40 final size:40
Alignment explanation
Indices: 232696768--232696959 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
232696758 CGAATGATGT
* * * * *
232696768 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
232696808 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
232696848 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
232696887 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
232696927 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
232696960 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:232696982 original size:79 final size:79
Alignment explanation
Indices: 232696767--232696984 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
232696757 TCGAATGATG
* * * * ** *
232696767 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
232696830 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
232696847 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
232696912 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
232696927 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
232696985 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:232709878 original size:40 final size:38
Alignment explanation
Indices: 232709790--232709970 Score: 152
Period size: 40 Copynumber: 4.6 Consensus size: 38
232709780 AAATTGAATG
* * * *
232709790 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-T
1 ATATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTGT
* * *
232709830 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-G-T
232709870 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGT-T
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGT
* * *
232709907 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-GT
* * *
232709946 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
232709971 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 17, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
37 35 0.30
38 4 0.03
39 5 0.04
40 72 0.62
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGT
Found at i:232709951 original size:77 final size:81
Alignment explanation
Indices: 232709788--232709970 Score: 196
Period size: 77 Copynumber: 2.3 Consensus size: 81
232709778 AGAAATTGAA
* * * * *
232709788 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAACCGGGTTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGCAAATTATAACCGGGCTAAGACCCGAAGG
* * *
232709853 CAATTGTGCTAGTGGC
66 CAATTGTGCAAATCGC
* * *
232709869 T-ATATCCGGGCTAAGACCCGAAGGC-ATT-CG-TGCAAGTTTTATCCGGGCTAAGACCCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGCAAATTATAACCGGGCTAAGACCCGAAGG
*
232709930 CATTTGTGCAAATCG-
66 CAATTGTGCAAATCGC
* * *
232709945 TGATATCCGGGTTAAGTCCCGTAGGC
1 TGATATCCGGGCTAAGACCCGAAGGC
232709971 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
76 1 0.01
77 58 0.67
78 1 0.01
79 3 0.03
80 22 0.26
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (81 bp):
TGATATCCGGGCTAAGACCCGAAGGCAATTACGCTGCAAATTATAACCGGGCTAAGACCCGAAGG
CAATTGTGCAAATCGC
Found at i:232717892 original size:40 final size:39
Alignment explanation
Indices: 232717804--232717987 Score: 140
Period size: 40 Copynumber: 4.6 Consensus size: 39
232717794 AAATTGAATG
* * * *
232717804 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGCAA-T-TG-TGCAAGTCGT
* * * *
232717844 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCG-T
* *
232717884 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTC-GT
* * *
232717924 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
* * *
232717963 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
232717988 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
37 4 0.03
38 2 0.02
39 5 0.04
40 103 0.89
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTCGT
Found at i:232718012 original size:80 final size:81
Alignment explanation
Indices: 232717844--232718032 Score: 195
Period size: 80 Copynumber: 2.4 Consensus size: 81
232717834 GCTGGAAATT
* * * *
232717844 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCA
*
232717909 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * *
232717925 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ATATCCGGGCTAAGACCCGAAGGC
* * * *
232717988 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
232718004 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
232718033 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
79 2 0.02
80 85 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:232726191 original size:28 final size:27
Alignment explanation
Indices: 232726128--232726197 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
232726118 ATAGTGAGTC
232726128 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
232726155 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
232726183 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
232726198 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:232728960 original size:29 final size:29
Alignment explanation
Indices: 232728918--232728984 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
232728908 GGTGGAGAAC
* * *
232728918 TTGTTCATTGAGAGTTCATGATGAAAAAT
1 TTGTTCGTTAAGAGTTCATGACGAAAAAT
* *
232728947 TTGTTCGTTAAGAGTTCGTGACGAAGAAT
1 TTGTTCGTTAAGAGTTCATGACGAAAAAT
232728976 TTGTTCGTT
1 TTGTTCGTT
232728985 GAGAATTTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.24, T:0.40
Consensus pattern (29 bp):
TTGTTCGTTAAGAGTTCATGACGAAAAAT
Found at i:232729461 original size:30 final size:30
Alignment explanation
Indices: 232729427--232729557 Score: 149
Period size: 30 Copynumber: 4.4 Consensus size: 30
232729417 TCTTAGCATC
* *
232729427 TTCCACCACCAACTCCACTAGCCACTCCTT
1 TTCCACCACCAACTCCACTAGCCACACATT
232729457 TTCCACCACCAACTCCACTAGCCACACATT
1 TTCCACCACCAACTCCACTAGCCACACATT
*
232729487 TTCCACCACCAAATCCACTAGCCACAC-TT
1 TTCCACCACCAACTCCACTAGCCACACATT
* ** * *
232729516 GCTCCATTACCTACTCCACTAACCACAC-TT
1 -TTCCACCACCAACTCCACTAGCCACACATT
*
232729546 GCTCCACCACCA
1 -TTCCACCACCA
232729558 CTTGTACCTA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 2 0.02
30 86 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.21
Consensus pattern (30 bp):
TTCCACCACCAACTCCACTAGCCACACATT
Found at i:232730133 original size:27 final size:25
Alignment explanation
Indices: 232730052--232730173 Score: 74
Period size: 25 Copynumber: 5.0 Consensus size: 25
232730042 ATTATATTTC
* *
232730052 TTAATATTATATTATATATAT-TCT
1 TTAATACTATATTATATATATATAT
* **
232730076 TT--TAATATATTAGGTATAT-T-T
1 TTAATACTATATTATATATATATAT
* *
232730097 TAAATTCTATATTACGTATATATATAT
1 TTAATACTATATTA--TATATATATAT
* * * *
232730124 TTTATACTATTTTATTTATATATCT
1 TTAATACTATATTATATATATATAT
* *
232730149 TTAATATTATATTATTTATATATAT
1 TTAATACTATATTATATATATATAT
232730174 AAATTTTTTT
Statistics
Matches: 74, Mismatches: 18, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
21 2 0.03
22 15 0.20
23 8 0.11
24 2 0.03
25 35 0.47
26 1 0.01
27 11 0.15
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATACTATATTATATATATATAT
Found at i:232730143 original size:25 final size:25
Alignment explanation
Indices: 232730115--232730173 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
232730105 ATATTACGTA
* *
232730115 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
232730140 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
232730165 TATATATAT
1 TATATATAT
232730174 AAATTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:232730225 original size:22 final size:24
Alignment explanation
Indices: 232730197--232730255 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
232730187 ACATGTTATC
232730197 TTATGTATATATCTT-A-ACTATA
1 TTATGTATATATCTTAACACTATA
* *
232730219 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATA-TCTTAACACTATA
*
232730244 TTATGTACATAT
1 TTATGTATATAT
232730256 TTTTAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
22 10 0.33
23 3 0.10
24 2 0.07
25 15 0.50
ACGTcount: A:0.34, C:0.08, G:0.07, T:0.51
Consensus pattern (24 bp):
TTATGTATATATCTTAACACTATA
Found at i:232730245 original size:25 final size:25
Alignment explanation
Indices: 232730213--232730261 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
232730203 ATATATCTTA
**
232730213 ACTATATTATGTATGTATTTTTAAC
1 ACTATATTATGTACATATTTTTAAC
232730238 ACTATATTATGTACATATTTTTAA
1 ACTATATTATGTACATATTTTTAA
232730262 TATTATCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (25 bp):
ACTATATTATGTACATATTTTTAAC
Found at i:232730438 original size:16 final size:15
Alignment explanation
Indices: 232730414--232730461 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
232730404 TAATTATTAT
*
232730414 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
232730430 TATTTTAATATTTTA
1 TATTTTAATATTTTA
232730445 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
232730461 T
1 T
232730462 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:232730449 original size:7 final size:8
Alignment explanation
Indices: 232730414--232730465 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
232730404 TAATTATTAT
*
232730414 TATTCTAA
1 TATTTTAA
*
232730422 TATTTTGA
1 TATTTTAA
232730430 TATTTTAA
1 TATTTTAA
232730438 TATTTT-A
1 TATTTTAA
232730445 TATTTTATA
1 TATTTTA-A
*
232730454 TATTTTAT
1 TATTTTAA
232730462 TATT
1 TATT
232730466 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:232734029 original size:12 final size:12
Alignment explanation
Indices: 232734012--232734047 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
232734002 AACATTTTGA
232734012 CATTCATACATT
1 CATTCATACATT
**
232734024 CATTCATGTATT
1 CATTCATACATT
232734036 CATTCATACATT
1 CATTCATACATT
232734048 GCATATCCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.44
Consensus pattern (12 bp):
CATTCATACATT
Found at i:232742472 original size:14 final size:14
Alignment explanation
Indices: 232742453--232742479 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
232742443 CGCTGAGGTA
232742453 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
232742467 TTTTCAATTTCTG
1 TTTTCAATTTCTG
232742480 CTTTCAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:232742484 original size:13 final size:14
Alignment explanation
Indices: 232742454--232742486 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
232742444 GCTGAGGTAT
*
232742454 TTTCAATTTCTGTT
1 TTTCAATTTCTGTC
232742468 TTTCAATTTCTG-C
1 TTTCAATTTCTGTC
232742481 TTTCAA
1 TTTCAA
232742487 AAAAATCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (14 bp):
TTTCAATTTCTGTC
Found at i:232742560 original size:14 final size:14
Alignment explanation
Indices: 232742541--232742567 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
232742531 CGCTGAGGTA
232742541 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
232742555 TTTTCAATTTCTG
1 TTTTCAATTTCTG
232742568 CTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:232742617 original size:89 final size:89
Alignment explanation
Indices: 232742315--232742736 Score: 758
Period size: 88 Copynumber: 4.8 Consensus size: 89
232742305 TGTTCCAAAG
* *
232742315 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742380 TTTCAATTT-TGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
232742403 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742468 TTTCAATTTCTGCT-TTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* *
232742491 ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCGCGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742556 TTTCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
* *
232742580 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
232742645 TTTTAATTTCTGCTCTTCAAAAAAA
66 TTTCAATTTCTGCTCTTC-AAAAAA
232742670 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742735 TT
66 TT
232742737 GAGGCACGCT
Statistics
Matches: 320, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
88 158 0.49
89 91 0.28
90 71 0.22
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTCTGCTCTTCAAAAAA
Found at i:232742637 original size:177 final size:178
Alignment explanation
Indices: 232742315--232742736 Score: 758
Period size: 177 Copynumber: 2.4 Consensus size: 178
232742305 TGTTCCAAAG
* *
232742315 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTAATTTCAATTTATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742380 TTTCAATTTTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
66 TTTCAATTTTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
* *
232742445 CTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCT-TTC-AAAAAA
131 CTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAA
* *
232742491 ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGGCGCGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742556 TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
66 TTTCAATTT-TGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
232742621 GCTGAGGTAATTTCAATTTATGTTTTTTAATTTCTGCTCTTCAAAAAAA
130 GCTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAA
232742670 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
232742735 TT
66 TT
232742737 GAGGCACGCT
Statistics
Matches: 234, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
176 70 0.30
177 90 0.38
178 3 0.01
179 71 0.30
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.35
Consensus pattern (178 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
CTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAA
Found at i:232742748 original size:33 final size:33
Alignment explanation
Indices: 232742706--232742769 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
232742696 TGAGCCTCAG
232742706 GGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
1 GGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
232742739 GGCACGCTGAGGTATTTTCAATTTCTGTTTT
1 GGCACGCTGAGGTATTTTCAATTTCTGTTTT
232742770 TCAATTTCTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.17, C:0.16, G:0.23, T:0.44
Consensus pattern (33 bp):
GGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
Found at i:232742772 original size:14 final size:14
Alignment explanation
Indices: 232742753--232742779 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
232742743 CGCTGAGGTA
232742753 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
232742767 TTTTCAATTTCTG
1 TTTTCAATTTCTG
232742780 CTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:232742834 original size:122 final size:123
Alignment explanation
Indices: 232742616--232742854 Score: 435
Period size: 122 Copynumber: 2.0 Consensus size: 123
232742606 TGAGCCTCAG
*
232742616 GGCACGCTGAGGTAATTTCAATTTATGTTTTTTAATTTCTGCTCTTCAAAAAAAATCAACTCATA
1 GGCACGCTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATA
232742681 TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
66 TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
* *
232742739 GGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTC-AAAAAAATCAACTCATA
1 GGCACGCTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATA
*
232742803 TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTG
66 TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
232742855 CTTTCCAATT
Statistics
Matches: 112, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
122 68 0.61
123 44 0.39
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (123 bp):
GGCACGCTGAGGTAATTTCAATTTATGTTTTTCAATTTCTGCTCTTCAAAAAAAATCAACTCATA
TTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTGA
Found at i:232742852 original size:89 final size:89
Alignment explanation
Indices: 232742739--232742967 Score: 395
Period size: 89 Copynumber: 2.6 Consensus size: 89
232742729 TCTGTTTTGA
232742739 GGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATAT
1 GGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATAT
232742804 TGCGAGAGGTGAGTTGAGCCTCAG
66 TGCGAGAGGTGAGTTGAGCCTCAG
* * *
232742828 GGCACGCTGAGGTATTTTCGATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATAT
1 GGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATAT
232742893 TGCGAGAGGTGAGTTGAGCCTCAG
66 TGCGAGAGGTGAGTTGAGCCTCAG
* * *
232742917 GGCACGCTGAGGTATTTTCAATTTTTGTTTTTTCAATTTATGCTTTTCAAA
1 GGCACGCTGAGGTATTTTCAATTTCTG-TTTTTCAATTTCTGCTCTTCAAA
232742968 TTCTGCTTTT
Statistics
Matches: 130, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 111 0.85
90 19 0.15
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (89 bp):
GGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATAT
TGCGAGAGGTGAGTTGAGCCTCAG
Found at i:232742963 original size:15 final size:15
Alignment explanation
Indices: 232742931--232742978 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
232742921 CGCTGAGGTA
* *
232742931 TTTTCAATTTTTGTT
1 TTTTCAATTTATGCT
232742946 TTTTCAATTTATGC-
1 TTTTCAATTTATGCT
* *
232742960 TTTTCAAATTCTGCT
1 TTTTCAATTTATGCT
232742975 TTTT
1 TTTT
232742979 AAAAAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.17, C:0.12, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTATGCT
Found at i:232743041 original size:104 final size:103
Alignment explanation
Indices: 232742842--232743041 Score: 271
Period size: 103 Copynumber: 1.9 Consensus size: 103
232742832 CGCTGAGGTA
* * *
232742842 TTTTCGATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
232742907 TGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
66 TGAGCCT-AGGGCACGCTGAGGTATTTTCAATTTTTGTT
* ** *
232742946 TTTTCAATTTATGCTTTTCAAATTCTGCT-TTTTAAAAAATCAACTCATATTGCTAGAGGTGAGT
1 TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
232743010 TGAGCCT-GGGTCACATG-TCGAGGTATTTTCAA
66 TGAGCCTAGGG-CAC--GCT-GAGGTATTTTCAA
232743042 AATCTGTTTT
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
101 3 0.04
102 3 0.04
103 40 0.47
104 39 0.46
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.39
Consensus pattern (103 bp):
TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTAGGGCACGCTGAGGTATTTTCAATTTTTGTT
Found at i:232743055 original size:103 final size:103
Alignment explanation
Indices: 232742842--232743052 Score: 266
Period size: 104 Copynumber: 2.0 Consensus size: 103
232742832 CGCTGAGGTA
* * *
232742842 TTTTCGATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
1 TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
** *
232742907 TGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
66 TGAGCCT-AGGGCACGCTGAGGTATTTTCAAAATCTGTT
* ** *
232742946 TTTTCAATTTATGCTTTTCAAATTCTGCT-TTTTAAAAAATCAACTCATATTGCTAGAGGTGAGT
1 TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
232743010 TGAGCCT-GGGTCACATG-TCGAGGTATTTTCAAAATCTGTT
66 TGAGCCTAGGG-CAC--GCT-GAGGTATTTTCAAAATCTGTT
232743050 TTT
1 TTT
232743053 CAAATTAAGT
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
101 3 0.03
102 3 0.03
103 40 0.43
104 47 0.51
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (103 bp):
TTTTCAATTTATGCTTTCCAAATTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
TGAGCCTAGGGCACGCTGAGGTATTTTCAAAATCTGTT
Found at i:232743874 original size:30 final size:30
Alignment explanation
Indices: 232743838--232743972 Score: 157
Period size: 30 Copynumber: 4.5 Consensus size: 30
232743828 TAAATCTTAG
*
232743838 CATTTTCCACCACCAACTCCACTAGCCACT
1 CATTTTCCACCACCAACTCCACTAGCCACA
*
232743868 CCTTTTCCACCACCAACTCCACTAGCCACA
1 CATTTTCCACCACCAACTCCACTAGCCACA
*
232743898 CATTTTCCACCACCAAATCCACTAGCCACA
1 CATTTTCCACCACCAACTCCACTAGCCACA
* ** * *
232743928 C-TTGCTCCATTACCTACTCCACTAACCACA
1 CATT-TTCCACCACCAACTCCACTAGCCACA
*
232743958 C-TTGCTCCACCACCA
1 CATT-TTCCACCACCA
232743973 CTTGTACCTA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 2 0.02
30 89 0.98
ACGTcount: A:0.27, C:0.47, G:0.04, T:0.22
Consensus pattern (30 bp):
CATTTTCCACCACCAACTCCACTAGCCACA
Found at i:232744514 original size:25 final size:26
Alignment explanation
Indices: 232744484--232744548 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
232744474 CTATATTACG
232744484 TATATATATATTTTATACTATT-TTA
1 TATATATATATTTTATACTATTATTA
* * * *
232744509 TTTATATATCTTTAATATTATTATTA
1 TATATATATATTTTATACTATTATTA
*
232744535 TATATATAAATTTT
1 TATATATATATTTT
232744549 TTCCTACATG
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 18 0.58
26 13 0.42
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (26 bp):
TATATATATATTTTATACTATTATTA
Found at i:232744622 original size:24 final size:22
Alignment explanation
Indices: 232744564--232744624 Score: 77
Period size: 24 Copynumber: 2.7 Consensus size: 22
232744554 ACATGTTATC
*
232744564 TTATGTATATATCTTAACTATA
1 TTATGTATATATTTTAACTATA
*
232744586 TTATGTATGTATTTTAACACTATA
1 TTATGTATATATTTT-A-ACTATA
*
232744610 TTATGTACATATTTT
1 TTATGTATATATTTT
232744625 TAATATTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 13 0.39
23 1 0.03
24 19 0.58
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.52
Consensus pattern (22 bp):
TTATGTATATATTTTAACTATA
Found at i:232744804 original size:16 final size:15
Alignment explanation
Indices: 232744780--232744827 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
232744770 TAATTATTAC
*
232744780 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
232744796 TATTTTAATATTTTA
1 TATTTTAATATTTTA
232744811 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
232744827 T
1 T
232744828 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:232744815 original size:7 final size:8
Alignment explanation
Indices: 232744780--232744831 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
232744770 TAATTATTAC
*
232744780 TATTCTAA
1 TATTTTAA
*
232744788 TATTTTGA
1 TATTTTAA
232744796 TATTTTAA
1 TATTTTAA
232744804 TATTTT-A
1 TATTTTAA
232744811 TATTTTATA
1 TATTTTA-A
*
232744820 TATTTTAT
1 TATTTTAA
232744828 TATT
1 TATT
232744832 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:232746479 original size:13 final size:13
Alignment explanation
Indices: 232746448--232746488 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
232746438 AACCAAGATA
232746448 TAAAGTTTAAAATT
1 TAAAGTTTAAAA-T
*
232746462 TAAAGTTCAAAAT
1 TAAAGTTTAAAAT
232746475 TAAAGTTTAAAAT
1 TAAAGTTTAAAAT
232746488 T
1 T
232746489 CAAGATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 14 0.56
14 11 0.44
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.39
Consensus pattern (13 bp):
TAAAGTTTAAAAT
Found at i:232746483 original size:20 final size:20
Alignment explanation
Indices: 232746454--232746491 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
232746444 GATATAAAGT
*
232746454 TTAAAATTTAAAGTTCAAAA
1 TTAAAATTTAAAATTCAAAA
*
232746474 TTAAAGTTTAAAATTCAA
1 TTAAAATTTAAAATTCAA
232746492 GATAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (20 bp):
TTAAAATTTAAAATTCAAAA
Found at i:232746500 original size:27 final size:27
Alignment explanation
Indices: 232746448--232746502 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
232746438 AACCAAGATA
* **
232746448 TAAAGTTTAAAATTTAAAGTTCAAAAT
1 TAAAGTTTAAAATTCAAAGTAAAAAAT
232746475 TAAAGTTTAAAATTC-AAGATAAAAAAT
1 TAAAGTTTAAAATTCAAAG-TAAAAAAT
232746502 T
1 T
232746503 TATAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.35
Consensus pattern (27 bp):
TAAAGTTTAAAATTCAAAGTAAAAAAT
Found at i:232750551 original size:17 final size:18
Alignment explanation
Indices: 232750509--232750557 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
232750499 AGTTGAAAAG
232750509 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
232750528 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
232750545 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
232750558 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:232751449 original size:40 final size:40
Alignment explanation
Indices: 232751383--232751549 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
232751373 AAATTGAATG
* * *
232751383 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
232751422 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
232751462 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
232751502 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
232751542 ATATCCGG
1 ATATCCGG
232751550 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:232758558 original size:17 final size:18
Alignment explanation
Indices: 232758516--232758564 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
232758506 AGTTGAAAAG
232758516 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
232758535 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
232758552 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
232758565 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:232759452 original size:40 final size:40
Alignment explanation
Indices: 232759386--232759552 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
232759376 AAATTGAATG
* * *
232759386 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
232759425 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
232759465 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
232759505 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
232759545 ATATCCGG
1 ATATCCGG
232759553 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:232768172 original size:40 final size:40
Alignment explanation
Indices: 232768076--232768293 Score: 269
Period size: 40 Copynumber: 5.5 Consensus size: 40
232768066 CGAATGGTGT
* * * *
232768076 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
232768117 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
232768157 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
232768197 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
232768237 CCGGGCTAATTCCCGAAGGCAATTGTGCGA-ATACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
232768276 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
232768294 ACAATCGAGA
Statistics
Matches: 158, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
39 22 0.14
40 111 0.70
41 25 0.16
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:232772316 original size:40 final size:40
Alignment explanation
Indices: 232772271--232772437 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
232772261 CGGAATATAA
232772271 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
232772311 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
232772351 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
232772391 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
232772430 CCGGATAT
1 CCGGATAT
232772438 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:232780339 original size:40 final size:40
Alignment explanation
Indices: 232780294--232780460 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
232780284 CGGAATATAA
232780294 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
232780334 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
232780374 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
232780414 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
232780453 CCGGATAT
1 CCGGATAT
232780461 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:232782667 original size:43 final size:44
Alignment explanation
Indices: 232782512--232782668 Score: 171
Period size: 43 Copynumber: 3.6 Consensus size: 44
232782502 TGTGTTTTCT
* * *
232782512 TGTAAGACCATGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCATGTCTGGGACGTTGGCATC-AATATTTGATTTACA
* *
232782556 TGTAAGACCATGTCTGGGACATCGGCATC-ATATTTGATTT-CA
1 TGTAAGACCATGTCTGGGACGTTGGCATCAATATTTGATTTACA
* *
232782598 TGTAAGACCTTGTCTGGGATAG-TGGCATCAATATTTG-TTTACA
1 TGTAAGACCATGTCTGGGA-CGTTGGCATCAATATTTGATTTACA
* * *
232782641 TGTAAGACCACGTCTAGGATGTTGGCAT
1 TGTAAGACCATGTCTGGGACGTTGGCAT
232782669 TATACGAGCT
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.32
43 38 0.40
44 27 0.28
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCAATATTTGATTTACA
Found at i:232782976 original size:17 final size:17
Alignment explanation
Indices: 232782954--232782989 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
232782944 TTTGATGATA
232782954 TTTTCAAGTTTTGAATG
1 TTTTCAAGTTTTGAATG
*
232782971 TTTTCATGTTTTGAATG
1 TTTTCAAGTTTTGAATG
232782988 TT
1 TT
232782990 AAGTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.06, G:0.17, T:0.58
Consensus pattern (17 bp):
TTTTCAAGTTTTGAATG
Found at i:232785262 original size:46 final size:45
Alignment explanation
Indices: 232785209--232785383 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 45
232785199 TATTTGGGCA
*
232785209 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
232785255 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
232785302 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
232785348 CCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
232785384 AGCGGGTTAC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:232785364 original size:93 final size:93
Alignment explanation
Indices: 232785205--232785376 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
232785195 AGGATATTTG
* * *
232785205 GGCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
232785270 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
232785298 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
232785363 TTGAGTCCGGGTTC
66 TTGAGTCCGAGTTC
232785377 ACTTATGAGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:232793184 original size:26 final size:26
Alignment explanation
Indices: 232793155--232793205 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232793145 AAATTAATGC
232793155 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232793181 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232793206 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232795304 original size:26 final size:26
Alignment explanation
Indices: 232795275--232795325 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232795265 AAATTAATGC
232795275 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232795301 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232795326 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232797423 original size:26 final size:26
Alignment explanation
Indices: 232797394--232797444 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232797384 AAATTAATGC
232797394 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232797420 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232797445 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232799542 original size:26 final size:26
Alignment explanation
Indices: 232799513--232799563 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232799503 AAATTAATGC
232799513 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232799539 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232799564 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232801661 original size:26 final size:26
Alignment explanation
Indices: 232801632--232801682 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232801622 AAATTAATGC
232801632 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232801658 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232801683 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232803780 original size:26 final size:26
Alignment explanation
Indices: 232803751--232803801 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232803741 AAATTAATGC
232803751 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232803777 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232803802 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232805899 original size:26 final size:26
Alignment explanation
Indices: 232805870--232805920 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232805860 AAATTAATGC
232805870 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232805896 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232805921 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232808017 original size:26 final size:26
Alignment explanation
Indices: 232807988--232808038 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232807978 AAATTAATGC
232807988 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232808014 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232808039 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232810135 original size:26 final size:26
Alignment explanation
Indices: 232810106--232810156 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
232810096 AAATTAATGC
232810106 TAATTAAACT-GAAATATTGAATGTTA
1 TAATTAAA-TAGAAATATTGAATGTTA
232810132 TAATTAAATAGAAATATTGAATGTT
1 TAATTAAATAGAAATATTGAATGTT
232810157 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.39
Consensus pattern (26 bp):
TAATTAAATAGAAATATTGAATGTTA
Found at i:232813034 original size:26 final size:26
Alignment explanation
Indices: 232812997--232813132 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
232812987 TGATACAAAT
* *
232812997 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
232813023 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
232813049 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
232813075 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
232813101 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
232813127 TGATAA
1 TGATAA
232813133 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:232814612 original size:28 final size:26
Alignment explanation
Indices: 232814581--232814655 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
232814571 AAAAGCAGCT
*
232814581 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATAATACCCCTA-G-ATGCA
* * * *
232814609 AAATTTCTGTTATACCCCTAGGTGCA
1 AAATTACTATAATACCCCTAGATGCA
* *
232814635 AAATTACCAAAATACCCCTAG
1 AAATTACTATAATACCCCTAG
232814656 GGTTAAATTG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
26 19 0.51
27 1 0.03
28 17 0.46
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTACTATAATACCCCTAGATGCA
Found at i:232827158 original size:66 final size:66
Alignment explanation
Indices: 232827086--232827215 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
232827076 ATTCATACAT
* * * *
232827086 CATTCATAACACATCTAATTAAGAGCATTTGATTCATTTCAATCATAGCATCCTAGTTATTTGAT
1 CATTCATAACACATCTAACTAAGAGCACTTGATTCATCTCAATCATAACATCCTAGTTATTTGAT
232827151 C
66 C
* * * * *
232827152 CATTCATAACACGTTTAGCTAGGAGCACTTGATTCATCTCGATCATAACATCCTAGTTATTTGA
1 CATTCATAACACATCTAACTAAGAGCACTTGATTCATCTCAATCATAACATCCTAGTTATTTGA
232827216 CGTACACAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 55 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAACTAAGAGCACTTGATTCATCTCAATCATAACATCCTAGTTATTTGAT
C
Found at i:232835327 original size:40 final size:40
Alignment explanation
Indices: 232835272--232835489 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
232835262 TGGATGATAA
* * * *
232835272 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
232835312 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232835352 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232835392 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
232835432 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
232835472 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
232835490 TACTTGGCTT
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:232843419 original size:40 final size:40
Alignment explanation
Indices: 232843364--232843581 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
232843354 TGGATGATAA
* * * *
232843364 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
232843404 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232843444 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232843484 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
232843524 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
232843564 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
232843582 TACTTGGCTT
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 16 0.10
40 151 0.90
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:232851509 original size:40 final size:40
Alignment explanation
Indices: 232851454--232851670 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
232851444 TGGATGATAA
* * * *
232851454 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
*
232851494 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232851534 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
232851574 CCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
232851613 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
232851653 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
232851671 TACTGGCTTG
Statistics
Matches: 165, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 54 0.33
40 111 0.67
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:232851626 original size:79 final size:80
Alignment explanation
Indices: 232851454--232851670 Score: 307
Period size: 79 Copynumber: 2.7 Consensus size: 80
232851444 TGGATGATAA
* * * * *
232851454 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTC
232851518 GTGCGAGTTACTATAT
65 GTGCGAGTTACTATAT
*
232851534 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
232851598 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * *
232851613 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
232851671 TACTGGCTTG
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
78 8 0.06
79 72 0.58
80 45 0.36
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGTTACTATAT
Found at i:232856492 original size:21 final size:21
Alignment explanation
Indices: 232856466--232856514 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
232856456 GCCCGTGTGG
232856466 ATCACACGGCC-AGGCCCAGTT
1 ATCACACGGCCTA-GCCCAGTT
232856487 ATCACACGGCCTAGCCCAGTT
1 ATCACACGGCCTAGCCCAGTT
232856508 ATCACAC
1 ATCACAC
232856515 ACCCGTGTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 26 0.96
22 1 0.04
ACGTcount: A:0.27, C:0.39, G:0.18, T:0.16
Consensus pattern (21 bp):
ATCACACGGCCTAGCCCAGTT
Found at i:232865199 original size:71 final size:71
Alignment explanation
Indices: 232865115--232865278 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
232865105 CGATTTGTCT
232865115 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232865180 CTTTCA
66 CTTTCA
232865186 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232865251 CTTTCA
66 CTTTCA
232865257 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
232865279 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:232865316 original size:71 final size:70
Alignment explanation
Indices: 232865115--232865312 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
232865105 CGATTTGTCT
* * * *
232865115 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
232865180 CTTTCA
65 CTTTCA
* * * *
232865186 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
232865251 CTTTCA
65 CTTTCA
* *
232865257 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
232865313 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:232872773 original size:71 final size:71
Alignment explanation
Indices: 232872689--232872852 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
232872679 CGATTTGTCT
232872689 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232872754 CTTTCA
66 CTTTCA
232872760 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
232872825 CTTTCA
66 CTTTCA
232872831 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
232872853 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:232872890 original size:71 final size:70
Alignment explanation
Indices: 232872689--232872886 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
232872679 CGATTTGTCT
* * * *
232872689 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
232872754 CTTTCA
65 CTTTCA
* * * *
232872760 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
232872825 CTTTCA
65 CTTTCA
* *
232872831 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
232872887 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:232875519 original size:17 final size:18
Alignment explanation
Indices: 232875477--232875525 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
232875467 AGTTGAAAAG
232875477 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
232875496 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
232875513 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
232875526 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:232876413 original size:40 final size:39
Alignment explanation
Indices: 232876347--232876512 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
232876337 AAATTGAATG
* * *
232876347 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
232876386 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
232876425 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
232876465 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
232876505 ATATCCGG
1 ATATCCGG
232876513 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:232883509 original size:17 final size:18
Alignment explanation
Indices: 232883467--232883515 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
232883457 AGTTGAAAAG
232883467 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
232883486 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
232883503 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
232883516 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:232884403 original size:40 final size:40
Alignment explanation
Indices: 232884337--232884503 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
232884327 AAATTGAATG
* * *
232884337 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
232884376 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
232884416 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
232884456 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
232884496 ATATCCGG
1 ATATCCGG
232884504 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:232893957 original size:40 final size:40
Alignment explanation
Indices: 232893892--232894137 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
232893882 TCTTCGGAAT
* ** *
232893892 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
232893931 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
232893971 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
232894011 TTAGCCCGGATATAAC-ACTCGCAC-AATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
232894049 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
232894089 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
232894129 TTAGCCCGG
1 TTAGCCCGG
232894138 GTATCATTCA
Statistics
Matches: 190, Mismatches: 13, Indels: 7
0.90 0.06 0.03
Matches are distributed among these distances:
38 30 0.16
39 19 0.10
40 140 0.74
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:232894066 original size:78 final size:78
Alignment explanation
Indices: 232893892--232894137 Score: 359
Period size: 78 Copynumber: 3.1 Consensus size: 78
232893882 TCTTCGGAAT
* ** * * * *
232893892 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAC-ACTCGCAC
232893956 AAATGCCTTCGGGTC
65 -AATGCCTTCGGGTC
232893971 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACTCGCACA
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACTCGCACA
232894036 ATGCCTTCGGGTC
66 ATGCCTTCGGGTC
*
232894049 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCAT
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CACTCGCA-
* *
232894114 AAATGCCTTCGGGAC
64 CAATGCCTTCGGGTC
232894129 TTAGCCCGG
1 TTAGCCCGG
232894138 GTATCATTCA
Statistics
Matches: 154, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
78 69 0.45
79 19 0.12
80 66 0.43
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (78 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACACTCGCACA
ATGCCTTCGGGTC
Found at i:232894092 original size:118 final size:120
Alignment explanation
Indices: 232893883--232894137 Score: 383
Period size: 118 Copynumber: 2.1 Consensus size: 120
232893873 AACCAAGTTT
* * * *
232893883 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC
*
232893947 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCACAAATGC
* ** *
232894002 CTTCGGGTCTTAGCCCGGATATAA-CACTCGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAAC
1 CTTCGGGACTTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC
*
232894065 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
232894120 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
232894138 GTATCATTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
118 93 0.76
119 20 0.16
120 10 0.08
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:232897089 original size:40 final size:40
Alignment explanation
Indices: 232897044--232897173 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
232897034 CGGAATACAA
232897044 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
232897084 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
232897124 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
232897164 CCGGATATAA
1 CCGGATATAA
232897174 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Done.