Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 745 of 770
Found at i:236109842 original size:2 final size:2
Alignment explanation
Indices: 236109793--236109823 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
236109783 TGGTATTTAA
*
236109793 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
236109824 ATAGTATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:236109897 original size:24 final size:25
Alignment explanation
Indices: 236109845--236109898 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
236109835 GAATATATAC
* *
236109845 ATAAGAAATATATAACTAATGGCAT
1 ATAAAAAATATATAACTAATGACAT
236109870 -TAAAAAATATAT-ACATAAT-ACAT
1 ATAAAAAATATATAAC-TAATGACAT
236109893 ATAAAA
1 ATAAAA
236109899 TACCTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (25 bp):
ATAAAAAATATATAACTAATGACAT
Found at i:236110406 original size:19 final size:19
Alignment explanation
Indices: 236110382--236110444 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
236110372 GGGTTTTTTA
236110382 TTTTTTTTGGGTTAGGTTT
1 TTTTTTTTGGGTTAGGTTT
* **
236110401 TTTTTTTT--CTT-CTTCTT
1 TTTTTTTTGGGTTAGGT-TT
236110418 TTTTTTTTGGGTTAGGTTT
1 TTTTTTTTGGGTTAGGTTT
236110437 TCTTTTTT
1 T-TTTTTT
236110445 CTTTTTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
16 1 0.03
17 12 0.36
19 13 0.39
20 7 0.21
ACGTcount: A:0.03, C:0.06, G:0.16, T:0.75
Consensus pattern (19 bp):
TTTTTTTTGGGTTAGGTTT
Found at i:236110429 original size:36 final size:34
Alignment explanation
Indices: 236110375--236110454 Score: 124
Period size: 36 Copynumber: 2.3 Consensus size: 34
236110365 GTGGCTAGGG
*
236110375 TTTTTTATTTTTTTTGGGTTAGGTTTTTTTTTTTC
1 TTTTTT-TTTTTTTTGGGTTAGGTTTTCTTTTTTC
236110410 TTCTTCTTTTTTTTTTGGGTTAGGTTTTCTTTTTTC
1 TT-TT-TTTTTTTTTTGGGTTAGGTTTTCTTTTTTC
236110446 TTTTTTTTT
1 TTTTTTTTT
236110455 GGAGGGGCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
34 5 0.12
35 4 0.10
36 31 0.74
37 2 0.05
ACGTcount: A:0.04, C:0.06, G:0.12, T:0.78
Consensus pattern (34 bp):
TTTTTTTTTTTTTTGGGTTAGGTTTTCTTTTTTC
Found at i:236111287 original size:90 final size:87
Alignment explanation
Indices: 236111100--236111294 Score: 214
Period size: 90 Copynumber: 2.2 Consensus size: 87
236111090 GACTCACTAA
* * *
236111100 AAACAGACATTAAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACTTCT
1 AAACAGAAATTAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCT
*
236111165 CGCAATATGAGTTGATTTTTTG
66 CGCAATACGAGTTGATTTTTTG
* * * * * *
236111187 AAAGGTAGAAATTGAAAAACGGAAATTGAAAATACCT-TGACGTGTGA-CCTGAGGCTCAACTCG
1 AAA--CAGAAATT-AAAAACAGAAATTGAAAATACCTCAG-CGCGTGAGCC-AAGGCTCAACTCA
*
236111250 CCTCTCGCAATACGAGTTGATTTTTTTT
61 CCTCTCGCAATACGAGTTGA-TTTTTTG
236111278 ACAACAGAAATTAAAAA
1 A-AACAGAAATTAAAAA
236111295 TACCTCAGCG
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
87 3 0.03
89 14 0.16
90 63 0.71
91 7 0.08
92 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (87 bp):
AAACAGAAATTAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCT
CGCAATACGAGTTGATTTTTTG
Found at i:236111331 original size:74 final size:74
Alignment explanation
Indices: 236111208--236111581 Score: 462
Period size: 74 Copynumber: 4.9 Consensus size: 74
236111198 TTGAAAAACG
* * *
236111208 GAAATTGAAAATACCT-TGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATT
1 GAAATTGAAAATACCTCAG-CGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
236111272 TTTTTTACAACA
63 TTTTTAACAACA
*
236111284 GAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
236111349 TGAAACATACGA
66 T-TAACA-AC-A
* * * *
236111361 AAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
236111426 TTGACAACA
66 TTAACAACA
* *
236111435 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
236111500 TTGAAAAATA
66 TT-AACAACA
* * * *
236111510 TAAATTGAGAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 GAAATT--GAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
236111575 GTTTTTT
62 -TTTTTT
236111582 TTTTTCTGAA
Statistics
Matches: 260, Mismatches: 28, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
74 102 0.39
75 14 0.05
76 25 0.10
77 80 0.31
79 33 0.13
80 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTAACAACA
Found at i:236111485 original size:151 final size:151
Alignment explanation
Indices: 236111209--236111581 Score: 504
Period size: 151 Copynumber: 2.5 Consensus size: 151
236111199 TGAAAAACGG
* * *
236111209 AAATT-GAAAATACCT-TGACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATT
1 AAATTAGAAAATACCTCAG-CGTGT-ACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATT
* *
236111272 TTTTTTACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
64 TTTTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATAT
236111337 GAGTTGA-TTTTTTGAAACATACGAA
129 GAGTTGATTTTTTTGAAA-A-A-GAA
*
236111362 AAATT-GACAATACCTCAGCGTGT-CCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
1 AAATTAGAAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
* *
236111425 TTTGACAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATGTGA
66 TTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGA
* *
236111490 GTTGATTTTTTTGAAAAATAT
131 GTTGATTTTTTTGAAAAAGAA
* * * * *
236111511 AAATTGAGAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATG
1 AAATT-AGAAAATACCTCAGCGTGT-ACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGAT-
236111576 TTTTTT
63 TTTTTT
236111582 TTTTTCTGAA
Statistics
Matches: 197, Mismatches: 16, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
149 6 0.03
150 1 0.01
151 121 0.61
152 10 0.05
153 52 0.26
154 7 0.04
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (151 bp):
AAATTAGAAAATACCTCAGCGTGTACCCGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTT
TTTGACAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACATCTCGCAATATGA
GTTGATTTTTTTGAAAAAGAA
Found at i:236111738 original size:72 final size:73
Alignment explanation
Indices: 236111658--236111799 Score: 259
Period size: 72 Copynumber: 2.0 Consensus size: 73
236111648 ACTCATTTTG
*
236111658 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGTTCAACTCATTTCTCGCAATATGAGTTG-A
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
236111722 ATTTTGAA
66 ATTTTGAA
*
236111730 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
236111795 ATTTT
66 ATTTT
236111800 TTTTTTTGAA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
72 61 0.91
73 6 0.09
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
ATTTTGAA
Found at i:236111820 original size:81 final size:81
Alignment explanation
Indices: 236111723--236111872 Score: 214
Period size: 83 Copynumber: 1.8 Consensus size: 81
236111713 ATGAGTTGAA
* * * **
236111723 TTTTGAAAACAGAAATTGAAATTACCTCA-ATGTG-TCTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCACATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATA
236111786 TGAGTTGAAATTTTTTT
65 TGAGTTGAAATTTTTTT
236111803 TTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAAT
1 TTTTGAAA-ACAGAAATTGAAAATACCTCA-CATGTGAACCGAGGCTCAACTCACCTCTCGCAAT
236111868 ATGAG
64 ATGAG
236111873 CTGATTTTGA
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
80 8 0.13
81 20 0.33
83 32 0.52
84 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (81 bp):
TTTTGAAAACAGAAATTGAAAATACCTCACATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGAAATTTTTTT
Found at i:236111949 original size:54 final size:55
Alignment explanation
Indices: 236111849--236111954 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
236111839 GAACCGAGGC
* *
236111849 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
236111903 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAATAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
236111955 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:236111961 original size:13 final size:13
Alignment explanation
Indices: 236111934--236111967 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
236111924 GAGTTGATTC
*
236111934 TTGAATAACATAAA
1 TTGAA-AACAGAAA
236111948 TTGAAAACAGAAA
1 TTGAAAACAGAAA
236111961 TTGAAAA
1 TTGAAAA
236111968 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:236112063 original size:139 final size:140
Alignment explanation
Indices: 236111805--236112291 Score: 879
Period size: 140 Copynumber: 3.5 Consensus size: 140
236111795 ATTTTTTTTT
236111805 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
*
236111869 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTC
* *
236111934 TTGAATAACATAAA
127 TTGAACAACGTAAA
*
236111948 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
236112013 CTGATTTTG-AAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
236112077 ACAACGTAAA
131 ACAACGTAAA
236112087 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
236112152 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCATTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
236112217 ACAACGTAAA
131 ACAACGTAAA
236112227 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
236112292 TTGAAATTAA
Statistics
Matches: 336, Mismatches: 6, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
139 138 0.41
140 169 0.50
142 23 0.07
143 6 0.02
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
ACAACGTAAA
Found at i:236112358 original size:72 final size:71
Alignment explanation
Indices: 236112224--236112389 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
236112214 TGAACAACGT
* * * *
236112224 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
236112289 GAGTTG
66 GAGTTG
*
236112295 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
236112360 TGAGTTG
65 TGAGTTG
**
236112367 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
236112390 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:236125961 original size:16 final size:16
Alignment explanation
Indices: 236125942--236125997 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
236125932 TTTTTTAGTT
236125942 TTTTTTTTTTGTTAGG
1 TTTTTTTTTTGTTAGG
* * **
236125958 TTTTCTTTTTCTT-CT
1 TTTTTTTTTTGTTAGG
236125973 TTTTTTTTTTGGTTAGG
1 TTTTTTTTTT-GTTAGG
236125990 TTTTTTTT
1 TTTTTTTT
236125998 GGGGGCTTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
15 9 0.30
16 13 0.43
17 8 0.27
ACGTcount: A:0.04, C:0.05, G:0.12, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTTGTTAGG
Found at i:236133106 original size:40 final size:40
Alignment explanation
Indices: 236133051--236133260 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
236133041 AACATTGGAA
236133051 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
236133091 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
236133131 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
236133171 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
236133210 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
236133251 CTATATCCGG
1 ATATATCCGG
236133261 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:236136103 original size:40 final size:40
Alignment explanation
Indices: 236136037--236136202 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
236136027 AAATTGAATG
* * *
236136037 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
236136076 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
236136116 A-ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
236136155 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
236136195 ATATCCGG
1 ATATCCGG
236136203 TTATATTCCG
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
38 3 0.03
39 41 0.40
40 57 0.55
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:236136121 original size:39 final size:40
Alignment explanation
Indices: 236136077--236136186 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
236136067 CTGGAAATTA
* *
236136077 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-T-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
**
236136115 TAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTC
1 T-ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTAGGC
*
236136156 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
236136187 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
38 4 0.06
39 27 0.44
40 27 0.44
41 4 0.06
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTAGGC
Found at i:236144046 original size:40 final size:40
Alignment explanation
Indices: 236143981--236144146 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
236143971 AAATTGAATG
* * *
236143981 ATATCC-GGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
236144019 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
236144059 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
236144099 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
236144139 ATATCCGG
1 ATATCCGG
236144147 TTATATTCCG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
38 6 0.06
39 9 0.09
40 87 0.84
41 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:236148465 original size:29 final size:29
Alignment explanation
Indices: 236148403--236148505 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
236148393 GTGACGAGAT
* * *
236148403 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
236148432 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
236148461 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
236148490 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
236148506 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:236153446 original size:35 final size:35
Alignment explanation
Indices: 236153402--236153568 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
236153392 TCCTCATTGA
** *
236153402 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
236153437 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
236153477 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
236153512 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
236153547 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
236153569 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:236153485 original size:75 final size:73
Alignment explanation
Indices: 236153397--236153568 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
236153387 GGTTTTCCTC
** * * **
236153397 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
236153461 TCAGTATGG
65 TCAGTATGG
*
236153470 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
236153535 CTCAGTATGG
64 CTCAGTATGG
236153545 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
236153569 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:236160944 original size:35 final size:35
Alignment explanation
Indices: 236160900--236161066 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
236160890 TCCTCATTGA
** *
236160900 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
236160935 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
236160975 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
236161010 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
236161045 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
236161067 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:236160983 original size:75 final size:73
Alignment explanation
Indices: 236160895--236161066 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
236160885 GGTTTTCCTC
** * * **
236160895 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
236160959 TCAGTATGG
65 TCAGTATGG
*
236160968 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
236161033 CTCAGTATGG
64 CTCAGTATGG
236161043 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
236161067 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:236185717 original size:33 final size:30
Alignment explanation
Indices: 236185670--236185742 Score: 83
Period size: 33 Copynumber: 2.3 Consensus size: 30
236185660 GGCACTAAGA
* *
236185670 AAAAAATATATATATATAAATAATAGTATT
1 AAAATATATATATATATAAATAATAATATT
* *
236185700 AGAAATCATATAGTATATATAACTGATAATATT
1 A-AAAT-ATATA-TATATATAAATAATAATATT
236185733 AAAATATATA
1 AAAATATATA
236185743 CATAATATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 1 0.03
31 8 0.22
32 9 0.25
33 18 0.50
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAATATATATATATATAAATAATAATATT
Found at i:236185917 original size:14 final size:16
Alignment explanation
Indices: 236185888--236185919 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
236185878 AGGTAAATAT
236185888 AATAAAATGATATTAA
1 AATAAAATGATATTAA
236185904 AATAAAA-G-TATTAA
1 AATAAAATGATATTAA
236185918 AA
1 AA
236185920 ACAGTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 1 0.06
16 7 0.44
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (16 bp):
AATAAAATGATATTAA
Found at i:236185965 original size:3 final size:3
Alignment explanation
Indices: 236185957--236186200 Score: 142
Period size: 3 Copynumber: 78.0 Consensus size: 3
236185947 ACAAGGATAT
236185957 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * * *
236186005 ATA ATA ATA ATA TTGA A-A CACA A-A AGCC ATT ATA ATA AAA ATA TTA
1 ATA ATA ATA ATA AT-A ATA -ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * *
236186051 A-A ATA A-A GTA ATA GA-A ACA TTA CTA CAT- ATA TATA TATA CATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA ATA -ATA -ATA -ATA
* * * * *
236186094 CATGA AGA TATA CACTA AT- GTA TTTCA ATA ACA ATA ACA ATA ATA ATA
1 -AT-A ATA -ATA -A-TA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA
236186142 ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA AT-A ATA ATA ATA
236186189 ATA ATA ATA ATA
1 ATA ATA ATA ATA
236186201 TTGAAATGCA
Statistics
Matches: 194, Mismatches: 27, Indels: 40
0.74 0.10 0.15
Matches are distributed among these distances:
2 10 0.05
3 149 0.77
4 31 0.16
5 4 0.02
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:236186814 original size:12 final size:12
Alignment explanation
Indices: 236186797--236186838 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
236186787 AGGTAAATTT
236186797 TTTTTTTGTATA
1 TTTTTTTGTATA
236186809 TTTTTTTGTATA
1 TTTTTTTGTATA
236186821 -TTTTTTGTATA
1 TTTTTTTGTATA
236186832 TTTTTTT
1 TTTTTTT
236186839 ATGTTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (12 bp):
TTTTTTTGTATA
Found at i:236186845 original size:10 final size:11
Alignment explanation
Indices: 236186798--236186837 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
236186788 GGTAAATTTT
236186798 TTTTTTGTATA
1 TTTTTTGTATA
236186809 TTTTTTTGTATA
1 -TTTTTTGTATA
236186821 TTTTTTGTATA
1 TTTTTTGTATA
236186832 TTTTTT
1 TTTTTT
236186838 TATGTTTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 17 0.61
12 11 0.39
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (11 bp):
TTTTTTGTATA
Found at i:236187259 original size:35 final size:35
Alignment explanation
Indices: 236187214--236187282 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
236187204 GAGTGTGTGA
*
236187214 TGGTGTTGGTGGCAGACAGCATGGGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
*
236187249 TGGTGCTGGTGGCAGACAGCATGGGAGAGTGGGA
1 TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGA
236187283 AGAGGCAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.22, C:0.10, G:0.49, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAGCATGGGAGAATGGGAG
Found at i:236188091 original size:53 final size:53
Alignment explanation
Indices: 236188011--236188207 Score: 184
Period size: 53 Copynumber: 3.5 Consensus size: 53
236188001 GCGTGCCCCG
* *
236188011 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAGAAATAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
* * * **
236188064 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AA-AACTAAAAATACCTCAGCGTGCCCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAAC-AAAAATA----A-------AA
*
236188126 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
*
236188179 AGGCTTAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
236188208 CAATTTAAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 30
0.72 0.09 0.19
Matches are distributed among these distances:
50 3 0.03
51 8 0.07
52 5 0.04
53 53 0.46
55 1 0.01
60 1 0.01
62 26 0.23
63 5 0.04
64 9 0.08
65 3 0.03
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (53 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAA
Found at i:236188126 original size:115 final size:115
Alignment explanation
Indices: 236187898--236188277 Score: 654
Period size: 115 Copynumber: 3.3 Consensus size: 115
236187888 GTGTCCTGAA
* **
236187898 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAAAAAAAGGCAGAACTCACCT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAATAAAAAGGCTTAACTCACCT
*
236187963 TTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
66 CTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
236188013 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAGAAATAAAAAGGCTTAACTCACC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACA-AAATAAAAAGGCTTAACTCACC
236188078 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTG-CCCGAG
65 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
236188128 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAAATAAAAAGGCTTAACTCACC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAAC-AAAATAAAAAGGCTTAACTCACC
* **
236188193 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCTTGAG
65 TCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
* *
236188244 GCTCAACTCACCTCTCGCAATATGAGTTAATTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTT
236188278 TTTGATGAAC
Statistics
Matches: 254, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
115 155 0.61
116 99 0.39
ACGTcount: A:0.36, C:0.23, G:0.14, T:0.26
Consensus pattern (115 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAACAACAAAATAAAAAGGCTTAACTCACCT
CTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAG
Found at i:236188373 original size:14 final size:14
Alignment explanation
Indices: 236188356--236188384 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
236188346 GATTTTGACG
236188356 AACAGAAATTGAAA
1 AACAGAAATTGAAA
236188370 AACAGAAATTGAAA
1 AACAGAAATTGAAA
236188384 A
1 A
236188385 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AACAGAAATTGAAA
Found at i:236200821 original size:33 final size:30
Alignment explanation
Indices: 236200779--236200846 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 30
236200769 TACTAAGAAA
*
236200779 ATATATATATATAAATAATAGTATTAGAAAT
1 ATATATATATATAAATAATAATATTA-AAAT
* *
236200810 CATATAGTATATATAACTGATAATATTAAAAT
1 -ATATA-TATATATAAATAATAATATTAAAAT
236200842 ATATA
1 ATATA
236200847 CATAATATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 5 0.16
32 9 0.28
33 18 0.56
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (30 bp):
ATATATATATATAAATAATAATATTAAAAT
Found at i:236201070 original size:3 final size:3
Alignment explanation
Indices: 236201062--236201307 Score: 125
Period size: 3 Copynumber: 79.3 Consensus size: 3
236201052 ACAAGGATAT
236201062 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * *
236201109 ATA ATA ATA AT- ATA TATA TTGA A-A CACA A-A AGCC ATT ATA ATA AAA
1 ATA ATA ATA ATA ATA -ATA AT-A ATA -ATA ATA A-TA ATA ATA ATA ATA
* * * * *
236201155 ATA TTA A-A ATA A-A GTA ATA GA-A ACA TTA CTA CATA TATA TATA CATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA -ATA -ATA -ATA -ATA
* * * *
236201202 CATGA AGA TATA CACTA AT- GTA TTTCA ATA ACAA ATA ATA ATA ATA ATA
1 -AT-A ATA -ATA -A-TA ATA ATA -AT-A ATA A-TA ATA ATA ATA ATA ATA
236201251 ATA ATA ATAA ATA ATA ATA AT- ATA ATA ATA ATA AT- ATA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
236201295 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
236201308 GAAATGCAAA
Statistics
Matches: 194, Mismatches: 26, Indels: 46
0.73 0.10 0.17
Matches are distributed among these distances:
2 16 0.08
3 140 0.72
4 34 0.18
5 4 0.02
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:236201793 original size:11 final size:12
Alignment explanation
Indices: 236201777--236201811 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
236201767 AAAGGAAAAA
236201777 AAGAGAG-AGGG
1 AAGAGAGAAGGG
236201788 AAGAGAGAAGGG
1 AAGAGAGAAGGG
236201800 -AGAGAGAAGGG
1 AAGAGAGAAGGG
236201811 A
1 A
236201812 GGGGAATCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 18 0.82
12 4 0.18
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (12 bp):
AAGAGAGAAGGG
Found at i:236201924 original size:11 final size:11
Alignment explanation
Indices: 236201908--236201949 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 11
236201898 GGTAATTTTT
236201908 TTTTTTGTATA
1 TTTTTTGTATA
236201919 TTTTTTTTTGTATA
1 ---TTTTTTGTATA
236201933 TTTTTTGTATA
1 TTTTTTGTATA
236201944 TTTTTT
1 TTTTTT
236201950 ATGTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 17 0.61
14 11 0.39
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTGTATA
Found at i:236201924 original size:14 final size:14
Alignment explanation
Indices: 236201905--236201949 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
236201895 AAAGGTAATT
236201905 TTTTTTTTTGTATA
1 TTTTTTTTTGTATA
236201919 TTTTTTTTTGTATA
1 TTTTTTTTTGTATA
236201933 ---TTTTTTGTATA
1 TTTTTTTTTGTATA
236201944 TTTTTT
1 TTTTTT
236201950 ATGTTTTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 11 0.39
14 17 0.61
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (14 bp):
TTTTTTTTTGTATA
Found at i:236205559 original size:2 final size:2
Alignment explanation
Indices: 236205552--236205576 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
236205542 AAGTGTTTAG
236205552 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
236205577 ATAATGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:236206995 original size:49 final size:49
Alignment explanation
Indices: 236206934--236207142 Score: 309
Period size: 49 Copynumber: 4.3 Consensus size: 49
236206924 ATGTATGAGA
*
236206934 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
236206983 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
*
236207032 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * *
236207081 --TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
236207128 TATA-A-ATGTGATAAG
1 TATATATATGTGATAAG
236207143 TCCCGAAGGG
Statistics
Matches: 149, Mismatches: 9, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
47 50 0.34
48 1 0.01
49 98 0.66
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:236209510 original size:33 final size:32
Alignment explanation
Indices: 236209469--236209605 Score: 134
Period size: 33 Copynumber: 4.2 Consensus size: 32
236209459 TGTATATATC
236209469 AATGTGCGAGTCATAATGATGTGTGAGCTGTGT
1 AATGTGCGAG-CATAATGATGTGTGAGCTGTGT
* * *
236209502 AATTTGCGAGTTATAGTGATGTGTGAGCTGTGT
1 AATGTGCGAG-CATAATGATGTGTGAGCTGTGT
* * * *
236209535 AATGTGTGAGCTACAATGATGTGCGAGTTGTGT
1 AATGTGCGAGC-ATAATGATGTGTGAGCTGTGT
*
236209568 AATGTGCAAGC-T-ATGTAATGTGTGAGCTGTAGT
1 AATGTGCGAGCATAATG--ATGTGTGAGCTGT-GT
236209601 AATGT
1 AATGT
236209606 ACGTGTGACA
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
30 3 0.04
32 11 0.13
33 71 0.84
ACGTcount: A:0.25, C:0.08, G:0.32, T:0.35
Consensus pattern (32 bp):
AATGTGCGAGCATAATGATGTGTGAGCTGTGT
Found at i:236209541 original size:16 final size:16
Alignment explanation
Indices: 236209487--236209605 Score: 85
Period size: 16 Copynumber: 7.2 Consensus size: 16
236209477 AGTCATAATG
236209487 ATGTGTGAGCTGTGTA
1 ATGTGTGAGCTGTGTA
* * * * *
236209503 ATTTGCGAGTTATAGTG
1 ATGTGTGAGCTGT-GTA
236209520 ATGTGTGAGCTGTGTA
1 ATGTGTGAGCTGTGTA
*** *
236209536 ATGTGTGAGCTACAATG
1 ATGTGTGAGCT-GTGTA
* *
236209553 ATGTGCGAGTTGTGTA
1 ATGTGTGAGCTGTGTA
** *
236209569 ATGTGCAAGCTATGTA
1 ATGTGTGAGCTGTGTA
236209585 ATGTGTGAGCTGTAGTA
1 ATGTGTGAGCTGT-GTA
236209602 ATGT
1 ATGT
236209606 ACGTGTGACA
Statistics
Matches: 74, Mismatches: 26, Indels: 5
0.70 0.25 0.05
Matches are distributed among these distances:
16 46 0.62
17 28 0.38
ACGTcount: A:0.24, C:0.08, G:0.33, T:0.36
Consensus pattern (16 bp):
ATGTGTGAGCTGTGTA
Found at i:236211299 original size:40 final size:40
Alignment explanation
Indices: 236211197--236211380 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
236211187 AAATTGAATG
* * * * *
236211197 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
236211237 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
236211277 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
236211317 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
236211357 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
236211381 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:236219233 original size:39 final size:40
Alignment explanation
Indices: 236219175--236219275 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
236219165 AAATTGAATG
* *
236219175 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
236219214 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
236219254 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
236219276 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:236219268 original size:40 final size:40
Alignment explanation
Indices: 236219175--236219352 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
236219165 AAATTGAATG
* * * * *
236219175 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
236219214 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
236219254 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
236219294 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
236219334 ATATCCGGGTTAAGTCCCG
1 ATATCCGGGCTAAGACCCG
236219353 TAGCCTTGGT
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.27
40 83 0.71
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:236224153 original size:26 final size:26
Alignment explanation
Indices: 236224116--236224251 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
236224106 TGATACAAAT
* *
236224116 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
236224142 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
236224168 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
236224194 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
236224220 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
236224246 TGATAA
1 TGATAA
236224252 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:236225814 original size:21 final size:20
Alignment explanation
Indices: 236225788--236225830 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
236225778 CATGTTTGAC
236225788 TGTTGTTATT-TACTGCATGCA
1 TGTTGTTATTAT-CTG-ATGCA
236225809 TGTTGTTATTATCTGATGCA
1 TGTTGTTATTATCTGATGCA
236225829 TG
1 TG
236225831 GGACTGGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 13 0.62
22 1 0.05
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (20 bp):
TGTTGTTATTATCTGATGCA
Found at i:236226266 original size:135 final size:136
Alignment explanation
Indices: 236226023--236226306 Score: 482
Period size: 135 Copynumber: 2.1 Consensus size: 136
236226013 GAGTAGTCTC
236226023 CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
* *
236226088 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
236226153 CTGTTA
131 CTGTTA
* *
236226159 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCGTGTA-TTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTT-CATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
236226222 TGTTATCTGAATAAGGGGCTAAGGCCTAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
236226287 ACTGTTA
130 ACTGTTA
**
236226294 CCTGAATGGGCTT
1 CCCAAATGGGCTT
236226307 AGGCCCAATG
Statistics
Matches: 140, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
135 105 0.75
136 29 0.21
137 6 0.04
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:236232053 original size:536 final size:540
Alignment explanation
Indices: 236227164--236240290 Score: 18919
Period size: 535 Copynumber: 24.4 Consensus size: 540
236227154 ATATGTAAAA
*
236227164 AGTTATGAAAGTGGTTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAG
1 AGTTATGAAAGTGG-TTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAG
* *
236227228 CCTAGGGTAAAAGTGTAAATGTGATAAAATTTAGGGGCAAAAATGTAA-TTTTGCATAGTATGAT
65 CCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGAT
* * *
236227292 AAATTTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCTAATTTTTGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
* * * *
236227357 TCGGTCAAAAGTTTGAAGACCACCATGGCTAGGGTTTTATTTAAGCTTTCCAAGCTCCATAGTAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
*
236227422 GTCCGTTCTTGCCCCGTTTTTAATGATTTTAACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
236227487 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
236227552 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
390 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
* * * *
236227617 CAATGAAAATGCTAAAAAAGACTAACTTGTGAAAG-T-T-AAATTTTTCATAAAAGTGTGATTTA
455 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236227679 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
*
236227700 AGTTATGAAAGTGGTTTGGCTAGGCTT-AAGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236227763 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAA-TTTGCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
* *
236227827 AATTTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-TTCATCTTCAA-CCC-
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236227889 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236227953 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGT-ACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236228017 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236228082 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
* *
236228147 AATGAAAATGCTAAAAAAGGACTAA-TTGT-AAAGTTGTAAAATTTTTCAT-AAAGTGTGATTTA
456 AATGAAAATGCT-AAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236228209 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
* * *
236228230 AGTTATGAAAGTGGTTTGTCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236228295 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236228360 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
236228425 TGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236228490 T-CGTTCTTG--CC-TTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
*
236228551 TTCTACCATTTATTTGAGTTATGATG-AGGTCTA-GGTTTGAACTATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236228614 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTT-CTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
* *
236228678 AATG-AAATGCTAAAAAAGACTAA-TTGTGAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236228741 TGGAAATTGTGGG-TTTTAT
521 TGGAAATTGTGGGTTTTTAT
*
236228760 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236228824 CTAGGGTAAAAGTGTAAATA--ATAAAATTTAGGGGCAAAAATGTAATTTTTGCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236228887 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
236228952 TGGCCGAAATTTTGAAGACCACCATGGCTAGGG--TT-TTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236229014 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236229079 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236229144 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
*
236229209 AATGAAAATGCTAAAAAGGACTAA-TTGTAAAAGTTATAAAATTTTTCAT-AAA--GTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236229270 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
*
236229290 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTA-TTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236229354 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAA-GTAATTTTT-GATAGTA--ATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236229415 AAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
236229479 TGGCCGAAATTTT-AAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236229543 TCCGTTCTTG-CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236229607 TTCTACCATTTATTTGAGTTATGATGAAGGTCTA-GGTTTGAA-C-TGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236229669 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236229734 AATG-AAATGCTAAAAA-GACTAATTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236229796 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236229816 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
236229881 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT
236229946 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
236230011 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
236230076 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
236230141 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTA-GGTTTGAACCATGTTATAAATTTGTGTAT
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
236230205 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
390 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
236230270 CAATGAAAATGCT-AAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
455 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236230334 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
236230355 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAA-T-TTTT-CAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236230417 CTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236230482 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236230547 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236230612 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTA-CTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236230676 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236230741 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236230806 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236230871 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236230891 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236230955 CTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGGCAAAAAT-TAATTTTT--GT-GTAGTGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTA-TGAT
236231015 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
236231080 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
236231145 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
236231210 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
236231275 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
390 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
236231340 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
455 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236231405 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
236231426 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
236231490 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236231554 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236231618 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236231683 TCCGTTCTTG-CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236231747 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAA-CATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236231811 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236231876 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236231941 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236231961 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236232026 CTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236232090 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236232155 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236232220 TCCGTTCTTG-CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236232284 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236232349 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
*
236232414 AATGAAAATGCTCAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236232479 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236232499 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* * * *
236232564 CTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGAAAAAATTTAATTTTTACAGTAGTATGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCA-TAGTATGAT
236232629 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
236232694 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
236232759 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
236232824 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTAT-AATTGTGTGTA
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATT-TGTGTA
236232888 TTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTT
389 TTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTT
236232953 TCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTT
454 TCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTT
236233018 AGTGGAAATTGTGGGTTTTTAT
519 AGTGGAAATTGTGGGTTTTTAT
* *
236233040 ACTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
236233105 CTAGGGTAAAAGTGTAAATA--ATAAAATTTAGGGGCAAAAAT-TAATTTTTCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236233167 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236233231 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236233296 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236233361 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236233426 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236233491 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236233556 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236233576 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236233640 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTGCCATAGTATGAT-
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236233704 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCC-AATTTT-GTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236233767 CGGCCGAAA-TTTGAAGACCACCATGGCTAGGG-TTT-TTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236233829 T-C-TTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236233892 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236233957 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236234022 AATGAAAATGCTAAAAAGGACTAA-TTGTAAAAGTT-TAAAA-TT-TCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236234083 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
* *
236234103 AGTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
236234167 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236234232 AAATTTAGTAATTAAATGTTTAAATAAAC-AAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236234296 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236234361 T-CGTTCTTG-CCCGTTTTTAATGATTTT-ACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236234423 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236234488 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAG-AACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
* *
236234552 AATGAAAATGCTAAAAAGGACTAA-TTGTGAAAGTTA-AAAATTTTTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236234615 TGGAAA-TGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
* * *
236234634 AGTTATGAAAGT-GTTTGTCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236234697 CTAGGG-ATAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGA
66 CTAGGGTA-AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGA
* **
236234761 TAAAATTTAGTAATTAAATGTTT-AATAAACAAAATAAAAGCCAAATTTTGGTCATCGT--AGGC
129 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
* * * * ** * * * *** * *
236234823 TTAAGG-TGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAGTGTAA-ATATGA
194 CT-CGGCCG-AAAT--TTTGAA-G--ACCA----CCATGGCTAGGG-T-TTTGTTTAAGCT-T--
** *** * ** * *** ** * **
236234886 TAAAATTTAGGGGCA-A-AAATGT-AATTTTTGACATAGTATGATAA--AATTT-A-GTAATT-A
243 T-CCA---AGCTCCATAGTAA-GTCCGTTCTTG-CCCCGT-TTTTAATGATTTTCACGTTTTTGA
** * ** ** * ** * * *
236234943 AATGTTTAAATAAACAAAATAAAAGCCAAATTT-TGGTCATCTTCAACCCCTTGGCCGAAATTTT
301 AATCCTT--GT-AACATGAT-CTA-CC-TATTTCT-ACCAT-TT--A----TT---TG-AGTTAT
* **** * * * * * *
236235007 GAAGACCACCATGG-CTAGGGTTTTGTTTAAGTTTTCTAAGCTCCATAGTAAGTCCGTTCTTGCC
348 GATG---A--A-GGTCTAGGG-TTTGAACCA-TGTTATAA-AT---TTGT--GT--ATT-TTG-A
* ** * * * **
236235071 TGTTT-TTAAT-GATT-TTCACG-TT-T--TT-GA-AATC--CTTCTAACATGATCTACCT-ATT
395 TGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTT-T----TG--CTAAGTGATT
* ** ** * * * * * *
236235124 TCTACCATTTATTTGAGTTATGATGAAGGTCTAGGTTTG-AACCATGTTAT-AAATTTGT-GT-A
453 T-T-CAATGAAAAT--GCTA--A-AAAGGACTA-ATTTGTAA--AAGTTATAAAATTTGTCATAA
*** * * * ** *
236235185 TTTTGATG-TTTAATGGTAGATTATGCATGTTTAT
508 AAGTG-TGATTTAGTGG-AAATTGTGGGTTTTTAT
* **** ** * * ** * *
236235219 GGTTGGA-GAAACAACTTTTGCTAAGTGATTTTCAA-TGAAAATGCTAAAAAGACT--AATTGTA
1 AGTT--ATGAAAGTGGTTCGGCT-AG-G--CTTAAAGTGAAAA---TAAATTGAATGAAAAT-T-
** * *** * ** * * * ** ** *
236235280 AAGTTATAAAATTTGTCATAAAAGTGT-GAT-TTAGTGGAAATTGT-GGGTTTTATAGTTATGAA
55 ATTTTACAAGCCTAG-GGTAAAAGTGTAAATATGA-T-AAAATT-TAGGG--GCA-A-AAATGTA
** * * ** * * * * ** **
236235342 AGTGGTTCGC-TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACA-AGCCTAGGGATA
112 A-TTTTTC-CATA-G--TATGAT-AAAATTTAGT-AATTAAA-T-GTTTAAATAAAC-A-AAATA
** * * * ** * **** ****** * * * ** * ***
236235405 AAAGTGTAAA-TATGATAAAATTTAGGGGCAAAAATGTAATTTT--TGACATAGTAT-GATAAAA
166 AAAG-CCAAATTTTGGTCATCTTCAACCCCTCGGCCGAAATTTTGAAGAC-CACCATGGCTAGGG
* ** * *** * * ** * * * **
236235466 TTTAGTAATTAAATG-TTTAAATAAACAAAATA-AAAG-CCAAATT-TTG-GTCATCTTCAACCC
229 TTTTGT--TT-AA-GCTTT--CCAAGCTCCATAGTAAGTCC--GTTCTTGCCCCGTTTTTAA-TG
* ** * * * *** * * * * *
236235526 CTTGGC-CGAAATTTTGAAGACCACCATGGCTAGGGTTTTATTTAAGCT-TTCCAAGCTCCATAG
285 ATTTTCACG--TTTTTGAA-A--TCC-TTG-TA--ACATGATCT-ACCTATTTCTA---CCAT--
* * * *** ** * * * * * *
236235589 TAAGTCCATTCTTGCCCCGTTTTTAATGATTTTC-ACGTTTTTGAAATCCTTGTAACATGATCTA
335 T---T--A-T-TTG---AG-TTATGATGAAGGTCTA-GGGTTTG-AA-CCATGTTATA-AATTTG
** ** * * * * * * ** *** **
236235653 CCTATTTCT-ACCATTTATTTG-AG-TTATG-ATG-CTAGGGTT--TGAACCATGTTATAAATTT
385 TGTATTT-TGA-TGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTT-TTGCTAA
* ** * * * * * * * * *
236235711 GTGTATTTT-GATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAG
447 GTG-ATTTTCAATG-AAAATGCTA-A-AAAGGA--CTAAT--TT---GTAA-AA--GTT-ATAA-
* *** *** * * ***
236235775 TGATTT-TCAATGAAAA-TGCT-AAAAAGACTAACTTGTGAAAGTTAAAAT
496 -AATTTGTC-AT-AAAAGTG-TGATTTAGTGGAAATTGTG--GGTTTTTAT
* ** **** ** * * * ** *
236235823 -TTTCAT-AAAGTGTGATTTAG-T-GG---AAATTGTGGGTTTTTATAGTTATG-AAAGTGGTTG
1 AGTT-ATGAAAGTG-G-TTCGGCTAGGCTTAAA--GTGAAAATAAATTG-AATGAAAATTATTTT
* * * ** * ** *** * *
236235880 GCTAGGCTTAAGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTA-GGGTAAAAGTGTAAAT
60 AC-AAGCCT-AG-G-GTA-AAAGTG--T-AAA-TATGATA-AAATTTAGGGGCAAAAATGT--A-
* ** ** *
236235944 ATGATAAAATTTAGGGGCA-AAAATG-TAATTTTTGACATAGTATGATAAAATTTAGTAATTAAA
112 AT--T----TTT----CCATAGTATGATAA-AATT----TAGTA--ATTAAA--T-GT--TTAAA
* * ** *** ** *
236236007 TGTTTAAA-TAAACAAAA-TAAAAGCCAAATTTTGGTCATCTTCAACCCCTTGGCCGAAATTTTG
155 ----TAAACAAAATAAAAGCCAAA---TTTTGG---TCATCTTCAACCCCTCGGCCGAAATTTTG
*
236236070 AAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT-CGTTCTTG-CCT
210 AAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGTCCGTTCTTGCCCC
236236133 GTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATT
275 GTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATT
*
236236198 TGAGTTATGATG-AGGTCTA-GGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGG
340 TGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGG
236236261 TAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAA
405 TAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAA
* *
236236326 AAA-GACTAACTTGTAAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGT
470 AAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGT
236236390 TTTTAT
535 TTTTAT
*
236236396 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGT
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* *
236236461 TTAGGGTATAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT
236236526 AAAATTTAGTAATTAAATGTTTAAA-AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
*
236236590 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGT-C--A-TAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
236236651 GT-CGTTCTTG-CCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
236236714 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTA-GGTTTGAA-C-TGTTATAAATTTGTGTAT
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
236236776 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
390 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
236236841 CAATGAAAATGCT-AAAA-GACTAATTTGT-AAAGTTATAAAA-TT-TCATAAAAGTGTGATTTA
455 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236236901 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
236236922 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236236987 CTAGGGTAAAAGTGTAAATA--AT----TTTAGGGG-AAAAAT-TAATTTTGCC-TAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236237043 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236237107 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236237171 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGT-A-ATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236237234 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA-T
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236237298 TT--TGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236237361 AATGAAAATGCTAAAAA-GACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236237425 TGGAAATTGTGGG-TTTTAT
521 TGGAAATTGTGGGTTTTTAT
236237444 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236237508 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTT--GTAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236237570 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236237635 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236237699 TCCGTTCTTG---CGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACAT-A--T-CC-AT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236237756 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236237821 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236237886 AATGAAAATGCTAAAAA-GACTAA-TTGT-AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236237948 TGGAAATTGT-GGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236237967 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* * * *
236238032 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGTAAAAATTTATTTTTTGCCGTAGTATGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT
236238097 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
*
236238162 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAGTAA
195 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
236238227 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
260 GTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTA
*
236238292 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAAGGTTTGAACCATGTTATAAATTTGTGTAT
325 TTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTAT
236238357 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
390 TTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTT
236238422 CAATGAAAATGCTAAAAA-GACTAA-TTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTA
455 CAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTA
236238484 GTGGAAATTGTGGGTTTTTAT
520 GTGGAAATTGTGGGTTTTTAT
236238505 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* *
236238570 CTAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAAT-T--TTTTTGCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236238632 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
236238697 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
236238762 T-CGTTCTTG--CCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236238824 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236238889 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
236238954 AATGAAAATGCTAAAAA-GACTAA-TTGT-AAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236239016 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
*
236239036 AGTTATGAAAGTGGTTTC-GCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAA-
1 AGTTATGAAAGTGG-TTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAG
236239099 CCTAGGGT-AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGA
65 CCTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGA
* *
236239163 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCTAATTTTTGTCATCTTCAACCC
129 TAAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCC
* * *
236239228 CTCGGCCGAAAGTTTGAAGACCACCAAGGCTAGGGTTTTATTTAAGCTTTCCAAGCTCCATAGTA
194 CTCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTA
*
236239293 AGTCCATTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
259 AGTCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCT
236239358 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA
324 ATTTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTA
236239423 TTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTT
389 TTTTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTT
*
236239488 TCAATGAAAATGCTAAAAA-GACTAA-TTGTGAAAGTT-TAAAATTT-TCATAAAAGTGTGATTT
454 TCAATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTT
236239549 AGTGGAAATTGTGGGTTTTTAT
519 AGTGGAAATTGTGGGTTTTTAT
*
236239571 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
236239636 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCATAGTATGATA
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
236239701 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCCT
131 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
236239765 CGGCCGAAATTTTGAAGACCACCAT-GCTAGGGTTTTGTTTAAGCTTTCCAAGC-CCATAGTAAG
196 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
*
236239828 T-CGTTCTTG--CTGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
261 TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
236239890 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
326 TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
236239955 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAG-AACAACTTTTGCTAAGTGATTTTC
391 TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
* * *
236240019 AATGAAAATGCTAAAAA-GACTAACTTGTGAAAGTTATAAAATTTTTCATAAAAGTGTGATTTAG
456 AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
236240083 TGGAAATTGTGGGTTTTTAT
521 TGGAAATTGTGGGTTTTTAT
236240103 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
1 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
236240168 CTA-GGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
66 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT
236240232 AAAATTTAGTAATTAAATGTTTAAA-AAACAAAAT-AAAGCCAAATTTTGGTCATCTTCAA
130 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA
236240291 NNNNNNNNNN
Statistics
Matches: 11551, Mismatches: 603, Indels: 880
0.89 0.05 0.07
Matches are distributed among these distances:
515 1 0.00
516 113 0.01
517 16 0.00
518 8 0.00
519 131 0.01
520 40 0.00
521 111 0.01
522 119 0.01
523 127 0.01
524 149 0.01
525 225 0.02
526 226 0.02
527 466 0.04
528 520 0.05
529 430 0.04
530 921 0.08
531 1050 0.09
532 531 0.05
533 355 0.03
534 655 0.06
535 1246 0.11
536 1206 0.10
537 779 0.07
538 563 0.05
539 136 0.01
540 163 0.01
541 355 0.03
543 1 0.00
544 6 0.00
545 8 0.00
546 14 0.00
547 11 0.00
548 8 0.00
549 10 0.00
550 3 0.00
551 12 0.00
552 2 0.00
554 4 0.00
555 6 0.00
556 3 0.00
557 3 0.00
558 2 0.00
561 2 0.00
562 7 0.00
563 2 0.00
564 1 0.00
565 5 0.00
566 15 0.00
567 10 0.00
568 8 0.00
569 9 0.00
570 6 0.00
571 5 0.00
572 6 0.00
573 14 0.00
574 25 0.00
575 40 0.00
576 11 0.00
577 17 0.00
578 7 0.00
579 8 0.00
580 2 0.00
581 4 0.00
582 7 0.00
583 11 0.00
584 10 0.00
585 24 0.00
586 6 0.00
587 13 0.00
588 14 0.00
589 18 0.00
590 16 0.00
591 27 0.00
592 19 0.00
593 36 0.00
594 25 0.00
595 28 0.00
596 26 0.00
597 16 0.00
598 16 0.00
599 22 0.00
600 16 0.00
601 20 0.00
602 17 0.00
603 24 0.00
604 27 0.00
605 7 0.00
606 18 0.00
607 8 0.00
608 19 0.00
609 16 0.00
610 8 0.00
611 7 0.00
612 6 0.00
613 2 0.00
614 7 0.00
615 1 0.00
616 12 0.00
617 5 0.00
618 18 0.00
619 6 0.00
620 5 0.00
621 15 0.00
622 3 0.00
623 11 0.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (540 bp):
AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTCCATAGTATGATA
AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
TCCGTTCTTGCCCCGTTTTTAATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTAT
TTCTACCATTTATTTGAGTTATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATT
TTGATGTTTAATGGTAGATTATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTC
AATGAAAATGCTAAAAAGGACTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAG
TGGAAATTGTGGGTTTTTAT
Found at i:236234926 original size:166 final size:166
Alignment explanation
Indices: 236234653--236234983 Score: 646
Period size: 166 Copynumber: 2.0 Consensus size: 166
236234643 AGTGTTTGTC
236234653 TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAGTGTAAATAT
1 TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAGTGTAAATAT
236234718 GATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAATTAAATGTT
66 GATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAATTAAATGTT
236234783 T-AATAAACAAAATAAAAGCCAAATTTTGGTCATCG
131 TAAATAAACAAAATAAAAGCCAAATTTTGGTCATCG
236234818 TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAAGTGTAAATA
1 TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGAT-AAAGTGTAAATA
236234883 TGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAATTAAATGT
65 TGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAATTAAATGT
236234948 TTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
130 TTAAATAAACAAAATAAAAGCCAAATTTTGGTCATC
236234984 TTCAACCCCT
Statistics
Matches: 164, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
165 52 0.32
166 79 0.48
167 33 0.20
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.32
Consensus pattern (166 bp):
TAGGCTTAAGGTGAAAATAAATTGAATGAAATTATTTTACAAGCCTAGGGATAAAGTGTAAATAT
GATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAAAATTTAGTAATTAAATGTT
TAAATAAACAAAATAAAAGCCAAATTTTGGTCATCG
Found at i:236243326 original size:34 final size:33
Alignment explanation
Indices: 236243276--236243341 Score: 123
Period size: 34 Copynumber: 2.0 Consensus size: 33
236243266 ACCTTGAAGT
236243276 AGAATTGCGTCAGGAATCTAGGATTAAGAAAAG
1 AGAATTGCGTCAGGAATCTAGGATTAAGAAAAG
236243309 AGAATTGCGGTCAGGAATCTAGGATTAAGAAAA
1 AGAATTGC-GTCAGGAATCTAGGATTAAGAAAA
236243342 TAATTGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 8 0.25
34 24 0.75
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.21
Consensus pattern (33 bp):
AGAATTGCGTCAGGAATCTAGGATTAAGAAAAG
Found at i:236244097 original size:20 final size:20
Alignment explanation
Indices: 236244074--236244111 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
236244064 CACATCCAAA
*
236244074 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
236244094 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
236244112 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:236250406 original size:28 final size:28
Alignment explanation
Indices: 236250360--236250428 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
236250350 TTTAAAACCC
*
236250360 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
236250387 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
236250415 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
236250429 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:236255458 original size:40 final size:40
Alignment explanation
Indices: 236255413--236255580 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
236255403 CGGAATATAA
236255413 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
236255453 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
236255493 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
236255533 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
236255573 CCGGATAT
1 CCGGATAT
236255581 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:236255563 original size:80 final size:80
Alignment explanation
Indices: 236255429--236255578 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
236255419 ATAACCACGT
* *
236255429 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
236255494 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
236255509 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
236255572 CCCGGAT
64 CCCGGAT
236255579 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:236261648 original size:29 final size:29
Alignment explanation
Indices: 236261614--236261716 Score: 179
Period size: 29 Copynumber: 3.6 Consensus size: 29
236261604 AACGATCTCA
** *
236261614 CACACTTAGTGCCATGCAATTTAAGCTCG
1 CACACTTAGTGCCATATAATTTAAGTTCG
236261643 CACACTTAGTGCCATATAATTTAAGTTCG
1 CACACTTAGTGCCATATAATTTAAGTTCG
236261672 CACACTTAGTGCCATATAATTTAAGTTCG
1 CACACTTAGTGCCATATAATTTAAGTTCG
236261701 CACACTTAGTGCCATA
1 CACACTTAGTGCCATA
236261717 CCTTCCCAAG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (29 bp):
CACACTTAGTGCCATATAATTTAAGTTCG
Found at i:236263400 original size:39 final size:39
Alignment explanation
Indices: 236263316--236263507 Score: 321
Period size: 39 Copynumber: 4.9 Consensus size: 39
236263306 TATGGTAACC
** *
236263316 TGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 TGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
236263356 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
*
236263395 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
236263434 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
236263473 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
236263508 TCGAACATTC
Statistics
Matches: 143, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 127 0.89
40 16 0.11
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (39 bp):
TGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:236271446 original size:39 final size:39
Alignment explanation
Indices: 236271362--236271514 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
236271352 TATGGTAACC
** * *
236271362 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
236271402 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
236271441 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
236271480 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
236271515 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:236271487 original size:78 final size:79
Alignment explanation
Indices: 236271331--236271513 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
236271321 TCGTTCAAAC
* * **
236271331 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
236271396 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
236271411 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
236271475 CAATTTGCACAATT
66 CAATTTGCACAATT
236271489 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
236271514 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:236276200 original size:40 final size:40
Alignment explanation
Indices: 236276141--236276348 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
236276131 CAATTGAATG
* * *
236276141 ATATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
236276181 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
236276221 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
236276261 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
236276301 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
236276341 ATATCCGG
1 ATATCCGG
236276349 TTGTAATCCG
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 145 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:236276279 original size:80 final size:80
Alignment explanation
Indices: 236276143--236276348 Score: 261
Period size: 80 Copynumber: 2.6 Consensus size: 80
236276133 ATTGAATGAT
* * * * * *
236276143 ATCCGGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
236276208 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
236276223 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
236276288 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
236276303 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
236276349 TTGTAATCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
80 108 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:236280572 original size:25 final size:23
Alignment explanation
Indices: 236280520--236280574 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
236280510 TATAAATAGT
236280520 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
236280543 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
236280568 AATAGTG
1 AATAGTG
236280575 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:236280671 original size:25 final size:25
Alignment explanation
Indices: 236280626--236280840 Score: 101
Period size: 25 Copynumber: 8.7 Consensus size: 25
236280616 TATGTATGAA
*
236280626 ATAGATATAAAAAA-ATGTACATAAT
1 ATAG-TATAAAAAATATATACATAAT
* *
236280651 ATAGTGTAAAAAATACATACATAAT
1 ATAGTATAAAAAATATATACATAAT
*
236280676 A-A--AT-TAAAATATATACATAAGAT
1 ATAGTATAAAAAATATATACAT-A-AT
* * *
236280699 AACATGTAGAAAAAATATATATATATAAT
1 -ATA-GTA-TAAAAA-ATATATACATAAT
* * *
236280728 ATAGTATTAAAGATATATACATAAA
1 ATAGTATAAAAAATATATACATAAT
* * *
236280753 ATAGTATAATATATATATACGTAAT
1 ATAGTATAAAAAATATATACATAAT
* ** * *
236280778 ATAGAAT-TTAGA-ATATACCTAAT
1 ATAGTATAAAAAATATATACATAAT
236280801 ATA-T-TAAAAGAATATAT--ATAAT
1 ATAGTATAAAA-AATATATACATAAT
*
236280823 ATAATATTAAAAAATATA
1 ATAGTA-TAAAAAATATA
236280841 ATAATAACAA
Statistics
Matches: 144, Mismatches: 29, Indels: 35
0.69 0.14 0.17
Matches are distributed among these distances:
21 13 0.09
22 10 0.07
23 17 0.12
24 23 0.16
25 57 0.40
26 3 0.02
27 3 0.02
28 3 0.02
29 2 0.01
30 4 0.03
31 9 0.06
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.33
Consensus pattern (25 bp):
ATAGTATAAAAAATATATACATAAT
Found at i:236280743 original size:23 final size:23
Alignment explanation
Indices: 236280717--236280846 Score: 74
Period size: 23 Copynumber: 5.5 Consensus size: 23
236280707 GAAAAAATAT
236280717 ATATATATAATATAGTATTAAAG
1 ATATATATAATATAGTATTAAAG
* *
236280740 ATATATACATAAAATAGTA-TAATAT
1 ATATAT--ATAATATAGTATTAA-AG
* *
236280765 ATATATACGTAATATAGAATT-TAG
1 ATATATA--TAATATAGTATTAAAG
*
236280789 A-ATATACCTAATATA-T-TAAAAG
1 ATATATA--TAATATAGTATTAAAG
*
236280811 AATATATATAATATAATATTAAA-
1 -ATATATATAATATAGTATTAAAG
*
236280834 AAATATAATAATA
1 ATATAT-ATAATA
236280847 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
21 1 0.01
22 14 0.17
23 28 0.34
24 14 0.17
25 25 0.30
26 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATATATAATATAGTATTAAAG
Found at i:236280828 original size:50 final size:50
Alignment explanation
Indices: 236280708--236280829 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 50
236280698 TAACATGTAG
*
236280708 AAAAAATATATATATATAATATAGTATTAAAGATATATACATAAAATAGT
1 AAAAAATATATATATATAATATAGAATTAAAGATATATACATAAAATAGT
* * ** * * * *
236280758 ATAATATATATATACGTAATATAGAATT-TAGA-ATATACCTAATATATT
1 AAAAAATATATATATATAATATAGAATTAAAGATATATACATAAAATAGT
236280806 AAAAGAATATATATAATATAATAT
1 AAAA-AATATATAT-ATATAATAT
236280830 TAAAAAATAT
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
48 16 0.28
49 11 0.19
50 30 0.53
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (50 bp):
AAAAAATATATATATATAATATAGAATTAAAGATATATACATAAAATAGT
Found at i:236281385 original size:30 final size:30
Alignment explanation
Indices: 236281319--236281445 Score: 193
Period size: 30 Copynumber: 4.3 Consensus size: 30
236281309 AGGTACAAGT
*
236281319 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
236281349 -GTGGTGGAGTAAGTGTGGCTAGTAGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
* *
236281378 GGTGGTGGAGCAAGTGTGACTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
236281408 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
236281438 GGTGGTGG
1 GGTGGTGG
236281446 CAAAGGCTAG
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
29 26 0.30
30 62 0.70
ACGTcount: A:0.20, C:0.06, G:0.49, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:236282211 original size:87 final size:89
Alignment explanation
Indices: 236282058--236282666 Score: 412
Period size: 87 Copynumber: 6.8 Consensus size: 89
236282048 TCTTTACTCG
* * ** * *
236282058 GCATGTGATCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGACTTTTT-AAAACTAAACATT
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAC-AAA-ATT
*
236282121 --AAAAACA-AAATTGAAAATAGCTCA
63 GAAAAAACAGAAATTGAAAATACCTCA
* * * *
236282145 GCACGTGAGCCAAGGCTCAACTTACTTCTCGCAATATGAGTTGA-TTTTT-AAAACAAAATTTG-
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAA-TTGA
* ** **
236282207 TAAAACAGATTTTGAAAATACCTTG
65 AAAAACAGAAATTGAAAATACCTCA
* * * * * *
236282232 GTATGTGACCCGAGGCTCAACTTATCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTG
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACA-AAATTG
* * *
236282296 AAAAAAAAAAAATCAATTGAAAATACCT-G
64 --AAAAAACAGA--AATTGAAAATACCTCA
* * * *
236282325 GCGTGTGATCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA-AAACA-AAATT
* *
236282390 GAAAAAAAAAAGAAATTGAAAATATCTCA
63 G--AAAAAACAGAAATTGAAAATACCTCA
* *
236282419 GC--GTG-TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATT
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-G-AAAACAAAA-T
*
236282481 TG-AAAAACAGAATTTGAAAATACCTCA
62 TGAAAAAACAGAAATTGAAAATACCTCA
* * * * *
236282508 GCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTTGAAACACAGAAAT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-ACA-AAAT
* * *
236282573 TG-AAGAACAGAAATGGAAAACACCTCA
62 TGAAAAAACAGAAATTGAAAATACCTCA
* * * *
236282600 GC--GT---CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTTTAAAGACAGAAA
1 GCATGTGAGC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTTGAAA-ACA-AAA
236282660 TTGAAAA
61 TTGAAAA
236282667 TACCTCAACG
Statistics
Matches: 432, Mismatches: 60, Indels: 58
0.79 0.11 0.11
Matches are distributed among these distances:
84 1 0.00
85 5 0.01
86 17 0.04
87 93 0.22
88 46 0.11
89 34 0.08
90 5 0.01
91 46 0.11
92 82 0.19
93 60 0.14
94 15 0.03
95 28 0.06
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (89 bp):
GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTGAA
AAAACAGAAATTGAAAATACCTCA
Found at i:236282355 original size:93 final size:91
Alignment explanation
Indices: 236282218--236282556 Score: 325
Period size: 93 Copynumber: 3.7 Consensus size: 91
236282208 AAAACAGATT
** * * * * *
236282218 TTGAAAATACCTTGGTATGTGACCCGAGGCTCAACTTATCTCTCGTAATATGAGTTGATTTTTG-
1 TTGAAAATACC-TGGCGTGTGACCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTGA
236282282 CAAAGCATAAATTGAAAAAAAAAAAATCAA
65 CAAA-CATAAATTGAAAAAAAAAAAA--AA
*
236282312 TTGAAAATACCTGGCGTGTGATCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 TTGAAAATACCTGGCGTGTGACCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
*
236282377 ACAAACATAAATTGAAAAAAAAAAGAAA
64 ACAAACATAAATTGAAAAAAAAAAAAAA
* *
236282405 TTGAAAATATCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCT-GGCGTGTGACCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGA-TTTTT-
* * * *
236282468 GAAAAACA-AAATTTG---AAAAACAGAAT
63 GACAAACATAAA-TTGAAAAAAAAAAAAAA
* * * * * *
236282494 TTGAAAATACCTCAGCGTGTGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 TTGAAAATACCT-GGCGTGTGACCT-GAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTT
236282557 TTTGAAACAC
Statistics
Matches: 215, Mismatches: 21, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
89 28 0.13
90 6 0.03
91 38 0.18
92 45 0.21
93 51 0.24
94 17 0.08
95 26 0.12
96 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (91 bp):
TTGAAAATACCTGGCGTGTGACCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
AAACATAAATTGAAAAAAAAAAAAAA
Found at i:236282454 original size:92 final size:92
Alignment explanation
Indices: 236282128--236282666 Score: 402
Period size: 92 Copynumber: 5.9 Consensus size: 92
236282118 ATTAAAAACA
* * * * *
236282128 AAATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTTACTTCTCGCAATATGAGTTGA--T
1 AAATTGAAAATACCTCAG--CGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
236282190 TTTT-AAAACA-AAATTTG---TAAAACAG
64 TTTTGAAAACAGAAA-TTGAAAAAAAAAAG
** ** ** * * * *
236282215 ATTTTGAAAATACCTTGGTATGTGACCCGAGGCTCAACTTATCTCTCGTAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
236282278 TTTGCAAAGCATAAATTGAAAAAAAAAAA
65 TTTG-AAAACAGAAATTGAAAAAAAAAAG
* * *
236282307 ATCAATTGAAAATACCT-GGCGTGTGATCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATT
1 A--AATTGAAAATACCTCAGCGTGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
236282371 TTTTTGACAAACATAAATTGAAAAAAAAAAG
63 TTTTTGA-AAACAGAAATTGAAAAAAAAAAG
* *
236282402 AAATTGAAAATATCTCAGCGTGT-CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
236282466 TGGAAAAACA-AAATTTG---AAAAACAG
66 TTG-AAAACAGAAA-TTGAAAAAAAAAAG
* ** * * *
236282491 AATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAGCGTGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* *
236282556 TTTTGAAACACAGAAATTG---AAGAACAG
64 TTTTGAAA-ACAGAAATTGAAAAAAAAAAG
* * * * *
236282583 AAATGGAAAACACCTCAGC--GT-CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTC
1 AAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT-
*
236282645 TTTTAAAGACAGAAATTGAAAA
65 TTTGAAA-ACAGAAATTGAAAA
236282667 TACCTCAACG
Statistics
Matches: 374, Mismatches: 53, Indels: 46
0.79 0.11 0.10
Matches are distributed among these distances:
85 3 0.01
86 2 0.01
87 51 0.14
88 46 0.12
89 37 0.10
90 6 0.02
91 36 0.10
92 92 0.25
93 54 0.14
94 19 0.05
95 28 0.07
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (92 bp):
AAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAACAGAAATTGAAAAAAAAAAG
Found at i:236282500 original size:13 final size:14
Alignment explanation
Indices: 236282468--236282500 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
236282458 TGATTTTTTG
236282468 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
236282482 GAAAAACAGAATTT
1 GAAAAACAAAATTT
236282496 GAAAA
1 GAAAA
236282501 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:236282541 original size:183 final size:178
Alignment explanation
Indices: 236282312--236282643 Score: 436
Period size: 183 Copynumber: 1.8 Consensus size: 178
236282302 AAAAAATCAA
* * * * *
236282312 TTGAAAATACCTGGCGTGTGATCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGA-TTTTTTT
1 TTGAAAATACCTAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTT
* * * * *
236282376 GACAA-ACATAAATTGAAAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTC
66 GA-AACACAGAAATTG---AAAAAAAGAAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACTC
*
236282440 ACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
125 ACCTCTCGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
236282494 TTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
1 TTGAAAATACCT-AGCGTGTGA-TCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * *
236282558 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
64 TTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCT
236282623 CTCGCAATATGAGCTGATTTT
129 CTCGCAATATGAGCTGATTTT
236282644 CTTTTAAAGA
Statistics
Matches: 131, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
179 38 0.29
181 22 0.17
182 12 0.09
183 39 0.30
184 20 0.15
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (178 bp):
TTGAAAATACCTAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTT
GAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCTCT
CGCAATATGAGCTGATTTTTTGGAAAAACAAAATTTGAAAAACAGAAT
Found at i:236282801 original size:73 final size:73
Alignment explanation
Indices: 236282572--236283313 Score: 905
Period size: 73 Copynumber: 10.1 Consensus size: 73
236282562 AACACAGAAA
* * * * *
236282572 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
236282637 TGATTTTCT
66 TGATTTT-T
* * *
236282646 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236282711 GTTGA--TTT
64 GTTGATTTTT
* * * * *
236282719 TTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
236282784 TGATTTTT
66 TGATTTTT
* *
236282792 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
236282857 GCTGATTTTT
64 GTTGATTTTT
* * *
236282867 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236282932 GTTGA--TTT
64 GTTGATTTTT
* * *
236282940 TTGACAAACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236283004 GTTGATTTTT
64 GTTGATTTTT
*
236283014 TT--AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236283077 GTTGA--TTT
64 GTTGATTTTT
* * * * *
236283085 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236283150 GTTGATTTTT
64 GTTGATTTTT
* *
236283160 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
236283225 GTTGA--GTT
64 GTTGATTTTT
* * * * *
236283233 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATAT-A
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
236283297 TTTGATTTTT
64 GTTGATTTTT
236283307 TTAGAAA
1 TT-GAAA
236283314 CTATAAACTA
Statistics
Matches: 578, Mismatches: 62, Indels: 55
0.83 0.09 0.08
Matches are distributed among these distances:
70 1 0.00
71 45 0.08
72 65 0.11
73 224 0.39
74 34 0.06
75 169 0.29
76 39 0.07
77 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:236283112 original size:293 final size:293
Alignment explanation
Indices: 236282572--236283314 Score: 1068
Period size: 293 Copynumber: 2.5 Consensus size: 293
236282562 AACACAGAAA
* * * * *
236282572 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
236282635 GCTGATTTTCTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
66 GTTGA--TT-TTTGACAA-ACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
* * *
236282699 CTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAA
126 CTCGCAATATGAGTTGATTTTTTTACAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAA
* *
236282763 CTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCT
191 CTCACCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAACATGTCC
* *
236282828 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
255 TGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTT
* *
236282867 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236282932 GTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
66 GTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* *
236282997 AATATGAGTTGATTTTTTTA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTC
131 AATATGAGTTGATTTTTTTACAAACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTC
* * * * *
236283061 ACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAG
194 ACCTATCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAACATGTCCTGAG
*
236283125 GCTCAACTCACCTATCGCAATATGAGTTGATTTTT
259 GCTCAACTCACCTATCGCAATATGAGCTGATTTTT
*
236283160 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
236283225 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCG
66 GTTGATTTTTGACAAAC-AAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* *
236283290 CAATAT-ATTTGATTTTTTTAGAAAC
130 CAATATGAGTTGATTTTTTTACAAAC
236283315 TATAAACTAA
Statistics
Matches: 407, Mismatches: 33, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
293 236 0.58
294 70 0.17
295 63 0.15
296 1 0.00
297 37 0.09
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (293 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTACAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCAC
CTATCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAACATGTCCTGAGGC
TCAACTCACCTATCGCAATATGAGCTGATTTTT
Found at i:236283275 original size:221 final size:219
Alignment explanation
Indices: 236282572--236283309 Score: 1042
Period size: 221 Copynumber: 3.4 Consensus size: 219
236282562 AACACAGAAA
* * * *
236282572 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236282635 GCTGATTTTCTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 GCTGA-TTT-TTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
236282700 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAA
128 TCGCAATATGAGTTGATTTTTGACAAAC-AAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
*
236282763 CTCACCTATCGCAATATGAGTTGATTTTT
192 CTCACCTCTCGCAATATGAGTTGA-TTTT
* *
236282792 TTGAAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
236282857 GCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
65 GCTGA-TTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
236282922 CGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
129 CGCAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACT
236282987 CACCTCTCGCAATATGAGTTGATTTT
194 CACCTCTCGCAATATGAGTTGATTTT
*
236283013 TTTAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * * *
236283078 TTGA-TTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATC
66 CTGATTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
236283141 GCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
130 GCAATATGAGTTGA--TTTTTGACAAACA-AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAA
* *
236283206 CTCACCTCTTGCAATATGAGTTGA-GTT
192 CTCACCTCTCGCAATATGAGTTGATTTT
* * * * *
236283233 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATAT-A
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
**
236283297 TTTGATTTTTTTA
65 GCTGATTTTTTTA
236283310 GAAACTATAA
Statistics
Matches: 474, Mismatches: 33, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
218 64 0.14
219 2 0.00
220 124 0.26
221 206 0.43
222 78 0.16
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (219 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGACAAACAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTT
Found at i:236283436 original size:99 final size:99
Alignment explanation
Indices: 236283325--236283627 Score: 405
Period size: 99 Copynumber: 3.0 Consensus size: 99
236283315 TATAAACTAA
* * * *
236283325 AAAAACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAATCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
236283390 GA-TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
66 GATTTTGAAAAGCAGAAATT-AAAAGCAAAAATTG
236283424 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
236283489 GATTTTAGAAAAACAGAAATTAAAAGCAAAAATTG
66 GATTTT-GAAAAGCAGAAATTAAAAGCAAAAATTG
* * * * *
236283524 -AAAATAGAAATTAAAAATACCTCGGCGTGCCCTGAGGTTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
236283588 GATTTTTGAAAAGCATAAATTGAAAA-AACAAAATTG
66 GA-TTTTGAAAAGCAGAAATT-AAAAGCA-AAAATTG
236283624 AAAA
1 AAAA
236283628 TACCTCAGCG
Statistics
Matches: 182, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
99 137 0.75
100 30 0.16
101 15 0.08
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (99 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAAGCAGAAATTAAAAGCAAAAATTG
Found at i:236283667 original size:89 final size:86
Alignment explanation
Indices: 236283510--236283683 Score: 240
Period size: 89 Copynumber: 2.0 Consensus size: 86
236283500 AACAGAAATT
* * * ** *
236283510 AAAAGCAAAAATTGAAAATAGAAATTAAAAATACCTCGGCGTGCCCTGAGGTTCAGCTCACCTCT
1 AAAAGCAAAAATTGAAAAAAAAAATTAAAAATACCTCGGCGTGACCTGAGGCCCAACTCACCTCT
236283575 CGCAATATGAGTTGATTTTTG
66 CGCAATATGAGTTGATTTTTG
* * *
236283596 AAAAGCATAAATTGAAAAAACAAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACC
1 AAAAGCAAAAATTGAAAAAA-AAAATTAAAAATACCTC-G-GCGTGACCTGAGGCCCAACTCACC
236283661 TCTCGCAATATGAGTTGATTTTT
63 TCTCGCAATATGAGTTGATTTTT
236283684 TTGAAAGATA
Statistics
Matches: 76, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
86 18 0.24
87 15 0.20
88 1 0.01
89 42 0.55
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (86 bp):
AAAAGCAAAAATTGAAAAAAAAAATTAAAAATACCTCGGCGTGACCTGAGGCCCAACTCACCTCT
CGCAATATGAGTTGATTTTTG
Found at i:236283703 original size:89 final size:89
Alignment explanation
Indices: 236283531--236283712 Score: 221
Period size: 89 Copynumber: 2.0 Consensus size: 89
236283521 TTGAAAATAG
* ** *
236283531 AAATTAAAAATACCTCGGCGTGCCCTGAGGTTCAGCTCACCTCTCGCAATATGAGTTGATTTTTG
1 AAATTAAAAATACCTCGGCGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
236283596 AAAAGCATAAATTGAAAAA-A-CA
66 AAAAGCATAAAATGAAAAACATCA
* *
236283618 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTC-G-GCGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA--TT
236283683 TTTG-AAAG-ATAGAAAT-AAAAACATCA
62 TTTGAAAAGCATA-AAATGAAAAACATCA
236283709 AAAT
1 AAAT
236283713 ACCAAAAGAT
Statistics
Matches: 81, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
87 15 0.19
88 1 0.01
89 45 0.56
90 8 0.10
91 12 0.15
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (89 bp):
AAATTAAAAATACCTCGGCGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAGCATAAAATGAAAAACATCA
Found at i:236295721 original size:25 final size:23
Alignment explanation
Indices: 236295669--236295723 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
236295659 TATAAATAGT
236295669 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
236295692 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
236295717 AATAGTG
1 AATAGTG
236295724 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:236295804 original size:22 final size:22
Alignment explanation
Indices: 236295779--236295853 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
236295769 TATGAAATAG
*
236295779 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
236295801 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
236295826 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
236295848 AGATAA
1 ATATAA
236295854 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:236295823 original size:25 final size:25
Alignment explanation
Indices: 236295785--236295933 Score: 106
Period size: 25 Copynumber: 5.9 Consensus size: 25
236295775 ATAGATATAA
* *
236295785 AAAAAATATGTACATAATATAGTGT
1 AAAAAATATATACATAATATAGTAT
*
236295810 AAAAAATACATACATAATATA--AT
1 AAAAAATATATACATAATATAGTAT
* * *
236295833 -TAAAATATATACATAAGATAACATGTAGA
1 AAAAAATATATACAT-A-AT-ATA-GTA-T
* *
236295862 AAAAAAAATATAAATAATATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
236295887 TAAAGATATATACATAAAATAGTAT
1 AAAAAATATATACATAATATAGTAT
* * *
236295912 AATATATATATACGTAATATAG
1 AAAAAATATATACATAATATAG
236295934 AATTTAGAAT
Statistics
Matches: 94, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
22 12 0.13
23 2 0.02
24 2 0.02
25 58 0.62
26 3 0.03
27 2 0.02
28 3 0.03
29 1 0.01
30 11 0.12
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (25 bp):
AAAAAATATATACATAATATAGTAT
Found at i:236296004 original size:18 final size:19
Alignment explanation
Indices: 236295969--236296006 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
236295959 AAGAATATAT
**
236295969 ATATATATAATATTAAAAA
1 ATATATATAATAACAAAAA
236295988 ATATA-ATAATAACAAAAA
1 ATATATATAATAACAAAAA
236296006 A
1 A
236296007 AAGAGAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (19 bp):
ATATATATAATAACAAAAA
Found at i:236296314 original size:16 final size:16
Alignment explanation
Indices: 236296276--236296314 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
236296266 TCTCCAAAAA
*
236296276 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
236296292 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
236296308 AATAACT
1 AAAAACT
236296315 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:236296515 original size:31 final size:31
Alignment explanation
Indices: 236296471--236296539 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
236296461 AGGTACAAGT
236296471 GGTGGT-GGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGGAGCAAGTGTGGCTAATGGAGTA
* *
236296501 GGTGGTGGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGGAGCAAGTGTGGCTAATGGAGTA
236296532 GGTGGTGG
1 GGTGGTGG
236296540 CAAAGGCTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.17, C:0.06, G:0.52, T:0.25
Consensus pattern (31 bp):
GGTGGTGGGAGCAAGTGTGGCTAATGGAGTA
Found at i:236296856 original size:3 final size:3
Alignment explanation
Indices: 236296848--236296887 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
236296838 AAAAGCTCTG
236296848 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
236296888 ACCTACGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:236300091 original size:29 final size:29
Alignment explanation
Indices: 236300057--236300217 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
236300047 TACTCGATTT
** * *
236300057 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
236300086 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
236300115 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
236300144 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
236300173 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
236300202 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
236300218 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:236302493 original size:39 final size:39
Alignment explanation
Indices: 236302373--236302595 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 39
236302363 TCGAATGATG
* * *
236302373 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
236302413 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
236302452 TCCGGACTAAATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
236302491 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
236302530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
236302571 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
236302596 AACGAGTAGC
Statistics
Matches: 166, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
38 24 0.14
39 61 0.37
40 72 0.43
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:236302575 original size:79 final size:78
Alignment explanation
Indices: 236302373--236302595 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 78
236302363 TCGAATGATG
* * * *
236302373 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATT
*
236302437 CGTGCGAGTTACTAA
64 TGTGCGAGTTACTAA
* * *
236302452 TCCGGACTAAAT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCGAAGGCATTT
236302515 GTGCGAGTTACTAAA
65 GTGCGAGTTACT-AA
* *
236302530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTT
236302595 G
65 G
236302596 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
77 25 0.20
78 34 0.27
79 51 0.41
80 15 0.12
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG
TGCGAGTTACTAA
Found at i:236302626 original size:79 final size:76
Alignment explanation
Indices: 236302386--236302628 Score: 267
Period size: 79 Copynumber: 3.1 Consensus size: 76
236302376 GGGCTAAGTC
* * * * *
236302386 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
*
236302450 AATCCGGACTAAAT
64 AATCCGG-TTAAAT
*
236302464 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-
*
236302528 AATCCGGGTTAAGT
64 AATCC-GGTTAAAT
* **
236302542 CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 -CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-C
236302606 TATATCCGGTTAAACT
63 TA-ATCCGGTTAAA-T
236302622 CCGAAGG
1 CCGAAGG
236302629 TACGTGATTC
Statistics
Matches: 142, Mismatches: 13, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
77 25 0.18
78 32 0.23
79 59 0.42
80 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
TCCGGTTAAAT
Found at i:236310683 original size:40 final size:40
Alignment explanation
Indices: 236310626--236310811 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
236310616 TCGAATGATG
* * *
236310626 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
236310666 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
236310706 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
236310746 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
236310787 -CCGGGCTATGTCCCGAAGACATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
236310812 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:236310818 original size:80 final size:79
Alignment explanation
Indices: 236310679--236310834 Score: 217
Period size: 80 Copynumber: 2.0 Consensus size: 79
236310669 GGACTAAGAT
* * **
236310679 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAG-TAGCT
236310743 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
*
236310759 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGACATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCT
*
236310823 ATATCCGGTTAA
65 AAATCCGGTTAA
236310835 ACTCCGAAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
79 8 0.12
80 58 0.85
81 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGACATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:236314666 original size:93 final size:92
Alignment explanation
Indices: 236314569--236314903 Score: 338
Period size: 93 Copynumber: 3.6 Consensus size: 92
236314559 TTAGGATTTT
** *
236314569 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATG-GATAAGGCCGAATGGCCAATGTGA-GAATGTGAACA
236314634 TGCATATATGTGATAAGGCCGAATGGCC-
64 TGCATATATGTGATAAGGCCGAATGGCCA
* *
236314662 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCAATGTGAGAATGTGAGCAT
1 ATGTGATGAATGTGAACATGCATATATG-GATAAGGCCGAATGGCCAATGTGAGAATGTGAACAT
*
236314727 GCATATGTGTGATAAGGCCGAATGGCCA
65 GCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
236314755 ATGTGGTGAATATGAACATGCATATATGGTGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATGTGATGAATGTGAACATGCATATATGG-ATAAGGCCGAATGGCCAATGTGAGA-ATG--TGA-
* * * *
236314820 ATATG--TATATGTGGTAAAGCCGAATGGCTA
61 ACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
236314850 ATGTGA-AATATGTATGAGATATGCATATGTGG-TAAAGCCGAATGGTCAATGTGA
1 ATGTGATGA-ATG--TGA-ACATGCATATATGGATAAGGCCGAATGGCCAATGTGA
236314904 AATATATATA
Statistics
Matches: 205, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
92 38 0.19
93 94 0.46
94 4 0.02
95 28 0.14
96 23 0.11
97 6 0.03
98 12 0.06
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (92 bp):
ATGTGATGAATGTGAACATGCATATATGGATAAGGCCGAATGGCCAATGTGAGAATGTGAACATG
CATATATGTGATAAGGCCGAATGGCCA
Found at i:236314683 original size:46 final size:47
Alignment explanation
Indices: 236314569--236314807 Score: 349
Period size: 46 Copynumber: 5.1 Consensus size: 47
236314559 TTAGGATTTT
** * *
236314569 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
236314616 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
236314662 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
236314709 ATGTGA-GAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
236314755 ATGTGGTGAATATGAACATGCATATATGGTG-TAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATAT-GTGATAAGGCCGAATGGCCA
236314802 ATGTGA
1 ATGTGA
236314808 AATATGTATG
Statistics
Matches: 176, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 89 0.51
47 84 0.48
48 3 0.02
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:236314934 original size:98 final size:96
Alignment explanation
Indices: 236314785--236314961 Score: 302
Period size: 98 Copynumber: 1.8 Consensus size: 96
236314775 CATATATGGT
*
236314785 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
1 GTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
236314850 ATGTGAAATATGTATGAGATATGCATATGTG
66 ATGTGAAATATGTATGAGATATGCATATGTG
236314881 GTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
1 GTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGCCGAATGG
*
236314945 CTAGTGTGAAATATGTA
63 CTAATGTGAAATATGTA
236314962 GGCGATGTGC
Statistics
Matches: 76, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
95 1 0.01
96 20 0.26
97 2 0.03
98 53 0.70
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
GTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTA
ATGTGAAATATGTATGAGATATGCATATGTG
Found at i:236314977 original size:50 final size:48
Alignment explanation
Indices: 236314777--236314961 Score: 293
Period size: 48 Copynumber: 3.8 Consensus size: 48
236314767 TGAACATGCA
236314777 TATATG-GTGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTG-GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
236314825 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
236314873 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
236314923 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
236314962 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
47 1 0.01
48 79 0.62
49 5 0.04
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:236315170 original size:36 final size:36
Alignment explanation
Indices: 236315107--236315218 Score: 152
Period size: 36 Copynumber: 3.1 Consensus size: 36
236315097 TGAAATATAT
* * *
236315107 TCCGGATAAGACCCGATGACTAAGTGTGGAGATTATG
1 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTTTG
236315144 TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
* * *
236315180 TCTGGGTAAGACCAGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACC-GATGACTACGTGTGGAGATTTTG
236315217 TC
1 TC
236315219 TGAGCTAAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
36 35 0.51
37 33 0.49
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (36 bp):
TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
Found at i:236321949 original size:34 final size:34
Alignment explanation
Indices: 236321898--236321981 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
236321888 GCAGTGTAAA
* * *
236321898 CAGTCTGGGCCTAAGCCC-TTATCAGTAGCAATAT
1 CAGTATGGGCCTTAGCCCATTA-CAGTAACAATAT
*
236321932 CAGTATGGGCCTTAGCCCATTACAGTAACAGTAT
1 CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
* * *
236321966 CAATGTGGACCTTAGC
1 CAGTATGGGCCTTAGC
236321982 GTAATTCAGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 39 0.93
35 3 0.07
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATGGGCCTTAGCCCATTACAGTAACAATAT
Found at i:236326031 original size:27 final size:27
Alignment explanation
Indices: 236326001--236326054 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
236325991 TCATACAACC
* *
236326001 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
236326028 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
236326055 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:236328930 original size:93 final size:93
Alignment explanation
Indices: 236328818--236328988 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
236328808 GCCCATAAGT
* *
236328818 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236328883 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
236328911 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236328976 CGAGTTCGGATGC
66 CGAGTTCGGATGC
236328989 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:236329004 original size:46 final size:46
Alignment explanation
Indices: 236328810--236328990 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
236328800 TGTAACCCGC
* * *
236328810 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
236328856 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
236328906 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
236328949 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
236328991 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:236331377 original size:29 final size:29
Alignment explanation
Indices: 236331338--236331425 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
236331328 CAAAGATAAC
*
236331338 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
236331367 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
236331396 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
236331426 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:236331396 original size:15 final size:15
Alignment explanation
Indices: 236331338--236331416 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
236331328 CAAAGATAAC
*
236331338 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
236331352 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
236331367 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
236331381 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
236331396 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
236331411 AAGAAA
1 AAGAAA
236331417 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:236331425 original size:15 final size:15
Alignment explanation
Indices: 236331349--236331425 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
236331339 AGAAAACCGA
236331349 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
236331364 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
236331378 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
236331392 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
236331408 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
236331423 ATA
1 ATA
236331426 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:236334418 original size:93 final size:93
Alignment explanation
Indices: 236334306--236334477 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
236334296 GCCCATAAGT
* *
236334306 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236334371 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
236334399 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236334464 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
236334478 AACCATCCTA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:236334473 original size:46 final size:46
Alignment explanation
Indices: 236334298--236334473 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
236334288 TGTAACCCGC
* * *
236334298 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
236334344 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
236334394 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
236334437 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
236334474 TGCCAACCAT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:236337547 original size:15 final size:15
Alignment explanation
Indices: 236337495--236337572 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
236337485 CAAAGATAAC
*
236337495 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
236337509 AAGAAATCCA-AGAT-
1 AAGAAATCCAGA-ATA
*
236337523 -AGAAACCCAGAATA
1 AAGAAATCCAGAATA
236337537 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
236337552 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
236337567 AAGAAA
1 AAGAAA
236337573 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
13 10 0.19
14 10 0.19
15 33 0.62
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:236337581 original size:15 final size:15
Alignment explanation
Indices: 236337506--236337581 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
236337496 AGAAAACCGA
236337506 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
236337521 AT--AGAAA-CCCAG
1 ATAAAGAAATCCAAG
236337533 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
236337548 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
236337564 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
236337579 ATA
1 ATA
236337582 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
12 4 0.08
13 7 0.14
15 36 0.72
16 3 0.06
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:236340595 original size:93 final size:93
Alignment explanation
Indices: 236340483--236340654 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
236340473 GCCCATAAGT
* *
236340483 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236340548 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
236340576 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
236340641 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
236340655 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:236340650 original size:46 final size:46
Alignment explanation
Indices: 236340475--236340650 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
236340465 TGTAACCCGC
* * *
236340475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
236340521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
236340571 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
236340614 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
236340651 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:236347561 original size:40 final size:40
Alignment explanation
Indices: 236347425--236347568 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 40
236347415 GTGTGCATGA
* *
236347425 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * *
236347465 GCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
236347505 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* *
236347545 GCAAATCGTGATATCCGGGTTAAG
1 GCAAATTGTGATATCCGGGCTAAG
236347569 TCCAGTAGGC
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 82 0.96
41 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:236349482 original size:40 final size:40
Alignment explanation
Indices: 236349426--236349525 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
236349416 GGATATAGTG
* * * * *
236349426 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGCACATAACCCGGATT-TAAGA
* * **
236349466 GCTCGCACAAATGCCTTCGGCACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGCACATAACCCGGATTTAAGA
236349506 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
236349526 ATCTTAGTCC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGCACATAACCCGGATTTAAGA
Found at i:236350293 original size:2 final size:2
Alignment explanation
Indices: 236350286--236350321 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
236350276 ATGTGCAAAC
236350286 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
236350322 GCTAGAGCCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:236356447 original size:30 final size:30
Alignment explanation
Indices: 236356411--236356511 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
236356401 GACAAGATTG
* * *
236356411 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
236356441 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
236356469 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
236356498 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
236356512 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:236356523 original size:29 final size:28
Alignment explanation
Indices: 236356440--236356515 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
236356430 AAAATTGTAC
* *
236356440 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
236356468 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
236356497 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
236356516 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:236364384 original size:29 final size:28
Alignment explanation
Indices: 236364317--236364388 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
236364307 AAAATTGTAC
* * *
236364317 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
236364345 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
236364374 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
236364389 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:236377609 original size:40 final size:40
Alignment explanation
Indices: 236377535--236377680 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
236377525 CCGCACCAAG
* * * * * *
236377535 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
236377575 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
236377615 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
236377655 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
236377681 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:236377695 original size:40 final size:40
Alignment explanation
Indices: 236377567--236377718 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
236377557 ATCACGATTT
* * * * *
236377567 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
236377607 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
236377647 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
236377687 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
236377719 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:236385836 original size:39 final size:40
Alignment explanation
Indices: 236385658--236385840 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
236385648 CCGCACCAAG
* * * * * * * *
236385658 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
236385698 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
236385738 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
236385778 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
236385817 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
236385841 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:236390286 original size:49 final size:49
Alignment explanation
Indices: 236390214--236390510 Score: 524
Period size: 49 Copynumber: 6.1 Consensus size: 49
236390204 ACATAATAAT
236390214 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
236390263 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
236390312 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
236390361 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAATGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
*
236390409 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAC
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
* *
236390458 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
236390507 ATAT
1 ATAT
236390511 ATGTGGTAAA
Statistics
Matches: 239, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 47 0.20
49 192 0.80
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATAC
Found at i:236390477 original size:146 final size:147
Alignment explanation
Indices: 236390212--236390510 Score: 564
Period size: 146 Copynumber: 2.0 Consensus size: 147
236390202 GTACATAATA
236390212 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGC
236390277 CTAATGGCCGACGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGA
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGA
236390342 TGAATGTGAAAATGTAT
131 TGAATGTGAAAATGTAT
* *
236390359 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGC
236390423 CTAATGGCCGACGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGA
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGA
*
236390488 TGAATGTGAAAGTGTAT
131 TGAATGTGAAAATGTAT
236390505 ATATAT
1 ATATAT
236390511 ATGTGGTAAA
Statistics
Matches: 149, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
146 110 0.74
147 39 0.26
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (147 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGC
CTAATGGCCGACGTGATGAATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGACGTGA
TGAATGTGAAAATGTAT
Found at i:236390642 original size:37 final size:37
Alignment explanation
Indices: 236390592--236390664 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
236390582 TTCCTGGTGA
236390592 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
*
236390629 GACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 GACCCGATGACTACGTGTGGAGATTACGTCCGGGTA
236390665 AGACTTCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTACGTCCGGGTAC
Found at i:236392911 original size:13 final size:13
Alignment explanation
Indices: 236392893--236392917 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
236392883 ATACGCTGTG
236392893 TGTGACCAATCCA
1 TGTGACCAATCCA
236392906 TGTGACCAATCC
1 TGTGACCAATCC
236392918 GTGTAGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (13 bp):
TGTGACCAATCCA
Done.