Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 748 of 770
Found at i:237055677 original size:24 final size:25
Alignment explanation
Indices: 237055636--237055685 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
237055626 AAAGGAATCG
237055636 CACACCACAAGTGCCTCTAATCATT
1 CACACCACAAGTGCCTCTAATCATT
*
237055661 CACA-CACATAGTG-CTCTATTCATT
1 CACACCACA-AGTGCCTCTAATCATT
237055685 C
1 C
237055686 GTTATTACAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.30, C:0.34, G:0.08, T:0.28
Consensus pattern (25 bp):
CACACCACAAGTGCCTCTAATCATT
Found at i:237055901 original size:47 final size:43
Alignment explanation
Indices: 237055806--237055989 Score: 287
Period size: 43 Copynumber: 4.2 Consensus size: 43
237055796 CCTTGCTCGA
** * * *
237055806 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
237055849 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAA-G--G-CCCGAATACAT
237055896 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
237055939 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
237055982 ATCACCGG
1 ATCACCGG
237055990 AACTGCTCTT
Statistics
Matches: 132, Mismatches: 5, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
43 88 0.67
44 2 0.02
46 1 0.01
47 41 0.31
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
Found at i:237055959 original size:90 final size:86
Alignment explanation
Indices: 237055806--237055989 Score: 287
Period size: 90 Copynumber: 2.1 Consensus size: 86
237055796 CCTTGCTCGA
**
237055806 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
237055871 GGCTCGAAGGAAGACCCGAATACAT
66 GGCTCGAA-G--G-CCCGAATACAT
* * *
237055896 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACAAAGCCTGCTA
1 ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
237055961 GGCTCGAAGGCCCGAATACAT
66 GGCTCGAAGGCCCGAATACAT
237055982 ATCACCGG
1 ATCACCGG
237055990 AACTGCTCTT
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
86 19 0.21
87 1 0.01
89 1 0.01
90 68 0.76
ACGTcount: A:0.32, C:0.32, G:0.22, T:0.14
Consensus pattern (86 bp):
ATCACCGGCACAAAGCCTGCTAAGCACGAAGACCCGAATACATATCACCGGCACAAAGCCTGCTA
GGCTCGAAGGCCCGAATACAT
Found at i:237056038 original size:40 final size:40
Alignment explanation
Indices: 237055993--237056121 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
237055983 TCACCGGAAC
* *
237055993 TGCTCTTCGGAACCTGGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCATGAA
* ** *
237056033 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCATGAA
* ** ** *
237056073 TGCTCTTCGGGATTTAGCCCGGATGTAACAC-AGCATGAA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCATGAA
237056112 TGCTCTTCGG
1 TGCTCTTCGG
237056122 GATTTACCCG
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 18 0.22
40 63 0.78
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (40 bp):
TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCATGAA
Found at i:237056119 original size:39 final size:40
Alignment explanation
Indices: 237056025--237056215 Score: 237
Period size: 39 Copynumber: 4.8 Consensus size: 40
237056015 ATACATCACT
*
237056025 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATATC-AC
1 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATAACGAC
*
237056064 TAGCATGAATGCTCTTCGGGATTTAGCCCGGATGTAAC-AC
1 -AGCATGAATGCTCTTCGGGATTTAGCCCGGATATAACGAC
* *
237056104 AGCATGAATGCTCTTCGGGATTTA-CCCGGATGTAACGCC
1 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATAACGAC
* * * *
237056143 AGCACGAATGCTC-TCGGGACTTAACCCGGATATATATCGCC
1 AGCATGAATGCTCTTCGGGATTTAGCCCGGATATA-A-CGAC
* *
237056184 AGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 AGCATGAATGCTCTTCGGGATTTAGCCCGGAT
237056216 CATCGTCGAG
Statistics
Matches: 139, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
38 21 0.15
39 46 0.33
40 38 0.27
41 17 0.12
42 17 0.12
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
AGCATGAATGCTCTTCGGGATTTAGCCCGGATATAACGAC
Found at i:237058213 original size:46 final size:47
Alignment explanation
Indices: 237058144--237058545 Score: 581
Period size: 46 Copynumber: 8.7 Consensus size: 47
237058134 CCCTTCGGGA
* * * * * *
237058144 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
237058191 C-TATCACATATATACACCTTCACATTCATCACA-TGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
237058236 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
237058283 CTTATCACATATATATACACTTTCACATTCAT--CATCGGCCATTA-G-
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
237058328 CTTATCACATATATACACCTTCACATTCATCACATT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
237058374 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
237058421 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTA-GC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
237058469 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
237058516 CTTATCACATATATACA-CTTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
237058546 GCGTAAAATC
Statistics
Matches: 326, Mismatches: 15, Indels: 29
0.88 0.04 0.08
Matches are distributed among these distances:
43 21 0.06
44 7 0.02
45 24 0.07
46 132 0.40
47 76 0.23
48 21 0.06
49 45 0.14
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:237058479 original size:95 final size:94
Alignment explanation
Indices: 237058144--237058545 Score: 585
Period size: 95 Copynumber: 4.3 Consensus size: 94
237058134 CCCTTCGGGA
* * * * * *
237058144 CTTATCACATTTATACAC-TTTCACATCCATCACGTTGGCCACTCGGCC-TATCACATATATACA
1 CTTATCACATATATACACACTTCACATTCATCACATT-GCCATTAGGCCTTATCACATATATACA
*
237058207 CCTTCACATTCATCACAT-GGCCATTCGGC
65 CCTTCACATTCATCACATCGGCCATTAGGC
237058236 CTTATCACATATATACAC-CTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATATA
1 CTTATCACATATATACACACTTCACATTCATCACAT-TGCCATTAGGCCTTATCAC--ATATATA
*
237058300 CACTTTCACATTCAT--CATCGGCCATTA-G-
63 CACCTTCACATTCATCACATCGGCCATTAGGC
237058328 CTTATCACATATATACAC-CTTCACATTCATCACATTGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACACTTCACATTCATCACATTGCCATTAGGCCTTATCACATATATACAC
*
237058392 TTTCACATTCATCACATCGGCCATTAGGC
66 CTTCACATTCATCACATCGGCCATTAGGC
237058421 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTA-GCCTTATCACATATATAC
1 CTTATCACATATATACACAC-TTCACATTCATCACATT-GCCATTAGGCCTTATCACATATATAC
237058485 ACCTTCACATTCATCACATCGGCCATTAGGC
64 ACCTTCACATTCATCACATCGGCCATTAGGC
237058516 CTTATCACATATAT--ACACTTCACATTCATC
1 CTTATCACATATATACACACTTCACATTCATC
237058546 GCGTAAAATC
Statistics
Matches: 289, Mismatches: 9, Indels: 24
0.90 0.03 0.07
Matches are distributed among these distances:
89 22 0.08
91 31 0.11
92 88 0.30
93 33 0.11
94 8 0.03
95 100 0.35
96 7 0.02
ACGTcount: A:0.30, C:0.31, G:0.07, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACACTTCACATTCATCACATTGCCATTAGGCCTTATCACATATATACAC
CTTCACATTCATCACATCGGCCATTAGGC
Found at i:237070355 original size:24 final size:24
Alignment explanation
Indices: 237070015--237070353 Score: 597
Period size: 24 Copynumber: 14.1 Consensus size: 24
237070005 GCAAAGACCA
237070015 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
237070039 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070063 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070087 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
237070111 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070135 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070159 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
237070183 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070207 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070231 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
237070255 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
237070279 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
237070303 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
237070327 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
237070351 TAT
1 TAT
237070354 AGTCACATTC
Statistics
Matches: 307, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 307 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:237078438 original size:24 final size:24
Alignment explanation
Indices: 237078098--237078430 Score: 594
Period size: 24 Copynumber: 13.9 Consensus size: 24
237078088 GCAAAGACCA
*
237078098 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
237078122 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
237078146 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
237078170 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
237078194 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
237078218 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
237078242 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
237078266 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
237078290 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
237078314 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
237078338 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
237078362 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
237078386 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
237078410 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
237078431 TGCTATAGTC
Statistics
Matches: 303, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 303 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:237081717 original size:59 final size:58
Alignment explanation
Indices: 237081621--237081752 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
237081611 AAAATTGTAC
237081621 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
237081679 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
237081738 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237081753 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:237081741 original size:88 final size:89
Alignment explanation
Indices: 237081591--237081752 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
237081581 GACAAGATTG
* * *
237081591 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
237081656 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
237081680 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
237081744 AAGTGTGCG
66 AAGTGTGCG
237081753 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:237081764 original size:29 final size:29
Alignment explanation
Indices: 237081621--237081752 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
237081611 AAAATTGTAC
*
237081621 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237081650 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237081679 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
237081709 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237081738 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237081753 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:237089683 original size:59 final size:58
Alignment explanation
Indices: 237089587--237089718 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
237089577 AAAATTGTAC
237089587 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
237089645 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
237089704 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237089719 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:237089707 original size:88 final size:89
Alignment explanation
Indices: 237089557--237089718 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
237089547 TGACAAGATT
* * *
237089557 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
237089622 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
237089646 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
237089710 AAGTGTGCG
66 AAGTGTGCG
237089719 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Found at i:237089730 original size:29 final size:29
Alignment explanation
Indices: 237089587--237089718 Score: 246
Period size: 29 Copynumber: 4.5 Consensus size: 29
237089577 AAAATTGTAC
*
237089587 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237089616 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237089645 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
237089675 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
237089704 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237089719 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:237096136 original size:43 final size:42
Alignment explanation
Indices: 237095971--237096195 Score: 256
Period size: 43 Copynumber: 5.5 Consensus size: 42
237095961 ACCCAAGTAT
*
237095971 CTTCGGGATTTAG-CCGGATATAGCA--ACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGC
* * * **
237096010 CTTCAGGTCTTACCCCGGATATAGTCACTA---GCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTACTCGCACAAATGC
*
237096050 CTTC--GACTTAGCCCGAATATAGTCACTA---GCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CACTACTCGCACAAATGC
*
237096088 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGC-ACTACTCGCACAAATGC
*
237096131 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGC-ACTACTCGCACAAATGC
237096174 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
237096196 CATCCGAATA
Statistics
Matches: 162, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 33 0.20
39 10 0.06
40 42 0.26
41 2 0.01
43 75 0.46
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
CTTCGGGACTTAGCCCGGATATAGCACTACTCGCACAAATGC
Found at i:237099392 original size:26 final size:26
Alignment explanation
Indices: 237099330--237099438 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
237099320 TGATACAAAT
237099330 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
237099355 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
237099381 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
237099407 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
237099433 TGATAA
1 TGATAA
237099439 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:237101088 original size:27 final size:27
Alignment explanation
Indices: 237101047--237101159 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
237101037 GAGGAAGCGT
*
237101047 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
237101074 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
237101101 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
237101129 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
237101155 TCTGG
1 TCTGG
237101160 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:237101152 original size:54 final size:54
Alignment explanation
Indices: 237101045--237101159 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
237101035 TGGAGGAAGC
*
237101045 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
237101099 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
237101153 GTTCTGG
1 GTTCTGG
237101160 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:237107433 original size:26 final size:25
Alignment explanation
Indices: 237107371--237107453 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
237107361 TGATACAAAT
237107371 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
237107396 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
237107422 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
237107448 TGATAA
1 TGATAA
237107454 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 23 0.42
26 30 0.55
27 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:237109108 original size:27 final size:27
Alignment explanation
Indices: 237109067--237109179 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
237109057 GAGGAAGCGT
*
237109067 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
237109094 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
237109121 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
237109149 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
237109175 TCTGG
1 TCTGG
237109180 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:237109172 original size:54 final size:54
Alignment explanation
Indices: 237109065--237109179 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
237109055 TGGAGGAAGC
*
237109065 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
237109119 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
237109173 GTTCTGG
1 GTTCTGG
237109180 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:237110160 original size:15 final size:16
Alignment explanation
Indices: 237110140--237110170 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
237110130 AATGGGTTTA
237110140 CAAAAAC-AAAATTTT
1 CAAAAACGAAAATTTT
237110155 CAAAAACGAAAATTTT
1 CAAAAACGAAAATTTT
237110171 ATAAAGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.58, C:0.13, G:0.03, T:0.26
Consensus pattern (16 bp):
CAAAAACGAAAATTTT
Found at i:237115429 original size:25 final size:25
Alignment explanation
Indices: 237115400--237115481 Score: 130
Period size: 25 Copynumber: 3.2 Consensus size: 25
237115390 TGATACAAAT
237115400 TGATAAT-GGTTAGGTAAATGTTCAA
1 TGATAATAGGTTAGGTAAATGTTC-A
237115425 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
237115450 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
237115476 TGATAA
1 TGATAA
237115482 GAATTTCATG
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 28 0.52
26 26 0.48
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:237118685 original size:40 final size:39
Alignment explanation
Indices: 237118640--237118769 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
237118630 CGGAATATAA
237118640 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
237118680 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
237118720 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
237118760 CCGGATATAA
1 CCGGATATAA
237118770 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:237118784 original size:40 final size:40
Alignment explanation
Indices: 237118656--237118807 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
237118646 ATAACCATGT
* * *
237118656 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
237118696 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
237118736 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
237118776 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
237118808 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:237118790 original size:80 final size:80
Alignment explanation
Indices: 237118656--237118805 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
237118646 ATAACCATGT
*
237118656 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
237118720 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
237118736 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
237118799 CCCGGAT
64 CCCGGAT
237118806 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:237132148 original size:15 final size:16
Alignment explanation
Indices: 237132128--237132161 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
237132118 TTATTTCATG
237132128 TATATATTG-TTTTAT
1 TATATATTGATTTTAT
*
237132143 TATATATTGATTTTGT
1 TATATATTGATTTTAT
237132159 TAT
1 TAT
237132162 TTTGTCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (16 bp):
TATATATTGATTTTAT
Found at i:237137265 original size:29 final size:29
Alignment explanation
Indices: 237137229--237137392 Score: 292
Period size: 29 Copynumber: 5.7 Consensus size: 29
237137219 TGTTGAAAAA
* *
237137229 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
* *
237137258 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
237137287 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
237137316 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
237137345 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCGATTACTGAT
237137374 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
237137393 TATTCATTCG
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 131 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCGATTACTGAT
Found at i:237137623 original size:40 final size:40
Alignment explanation
Indices: 237137566--237137809 Score: 337
Period size: 40 Copynumber: 6.1 Consensus size: 40
237137556 CGAATACACG
* * *
237137566 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
237137606 TCACTAGCACGAATGCTCTTTGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* * *
237137646 TCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
237137686 TCACTAGCATGAATGCTCTTCGGAACTTAG-TCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
237137725 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
* *
237137765 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
237137805 TCACT
1 TCACT
237137810 CTCAATTCTC
Statistics
Matches: 191, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.19
40 154 0.81
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:237137732 original size:119 final size:120
Alignment explanation
Indices: 237137566--237137809 Score: 337
Period size: 119 Copynumber: 2.0 Consensus size: 120
237137556 CGAATACACG
* * * *
237137566 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTTGGGA
1 TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* * *
237137631 CTTTGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTTGCCCGGATACA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
* * * *
237137686 TCACTAGCATGAATGCTCTTCGGAACTTAG-TCGGATATATCACTAGCATGAATGCTCTTCGGAA
1 TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
* * * * *
237137750 CTTAGTCCGGATATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
66 CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
237137805 TCACT
1 TCACT
237137810 CTCAATTCTC
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
119 81 0.75
120 27 0.25
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (120 bp):
TCACTAGCATGAATGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAA
CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
Found at i:237139679 original size:37 final size:37
Alignment explanation
Indices: 237139626--237139716 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
237139616 TATAAAAGAA
237139626 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
237139663 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
237139700 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
237139717 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:237139867 original size:49 final size:49
Alignment explanation
Indices: 237139812--237140017 Score: 313
Period size: 49 Copynumber: 4.4 Consensus size: 49
237139802 TTTTACATTA
237139812 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
237139861 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
237139910 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
237139950 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
237139999 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
237140018 CACATATGTA
Statistics
Matches: 144, Mismatches: 4, Indels: 18
0.87 0.02 0.11
Matches are distributed among these distances:
40 37 0.26
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 101 0.70
ACGTcount: A:0.29, C:0.33, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:237139929 original size:89 final size:89
Alignment explanation
Indices: 237139833--237140012 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
237139823 TTATCACATA
237139833 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
237139898 TTCACCACATCGGCCATTAGGCCT
66 TTCACCACATCGGCCATTAGGCCT
237139922 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
1 TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
* * * *
237139987 TTCATCGCATTGGCCATTCGGCCT
66 TTCACCACATCGGCCATTAGGCCT
237140011 TA
1 TA
237140013 TCACACACAT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.28, C:0.33, G:0.09, T:0.29
Consensus pattern (89 bp):
TACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACA
TTCACCACATCGGCCATTAGGCCT
Found at i:237143523 original size:80 final size:80
Alignment explanation
Indices: 237143439--237143587 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
237143429 TATGGTAACC
* * * *
237143439 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
237143503 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
237143519 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
237143584 CCGG
66 CCGG
237143588 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:237143529 original size:40 final size:38
Alignment explanation
Indices: 237143480--237143587 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
237143470 ATCACGATTT
*
237143480 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
237143520 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
237143560 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
237143588 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:237151637 original size:80 final size:80
Alignment explanation
Indices: 237151553--237151701 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
237151543 TATGGTAACC
* * * *
237151553 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
237151617 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
237151633 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
237151698 CCGG
66 CCGG
237151702 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:237151643 original size:40 final size:38
Alignment explanation
Indices: 237151594--237151701 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
237151584 ATCACGATTT
*
237151594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
237151634 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
237151674 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
237151702 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:237154540 original size:31 final size:32
Alignment explanation
Indices: 237154477--237154599 Score: 122
Period size: 38 Copynumber: 3.5 Consensus size: 32
237154467 TCAATCATGC
*
237154477 ACTGGGCCGTAGCCCTTTTCATATTTTATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATA---T-TTTCATAAT
237154514 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCA----T-AT-TTTCATAAT
*
237154552 ACTGGGCCGAAGCCTTTTCATA-TTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTTCATAAT
237154583 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
237154600 ACTGTAAACG
Statistics
Matches: 79, Mismatches: 2, Indels: 16
0.81 0.02 0.16
Matches are distributed among these distances:
31 25 0.32
33 1 0.01
34 1 0.01
36 8 0.10
37 11 0.14
38 31 0.39
40 1 0.01
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (32 bp):
ACTGGGCCGAAGCCTTTTCATATTTTCATAAT
Found at i:237154549 original size:38 final size:38
Alignment explanation
Indices: 237154477--237154582 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
237154467 TCAATCATGC
*
237154477 ACTGGGCCGTAGCCCTTTTCATATTT--TATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
*
237154514 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
237154552 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
237154583 ACTGGGCCGA
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
36 12 0.19
37 11 0.17
38 41 0.64
ACGTcount: A:0.23, C:0.22, G:0.15, T:0.41
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:237154837 original size:24 final size:24
Alignment explanation
Indices: 237154791--237154903 Score: 135
Period size: 23 Copynumber: 4.8 Consensus size: 24
237154781 GCTTTATCAT
* *
237154791 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
237154816 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTCA
*
237154840 ATAACTGGGGCATAAGCCCTTT-T
1 ATAACTGGGGCATAAGCCCTTTCA
*
237154863 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTCA
237154887 ATAACT-GGGCATAAGCC
1 ATAACTGGGGCATAAGCC
237154904 TTTTTCACTT
Statistics
Matches: 80, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
23 35 0.44
24 32 0.40
25 13 0.16
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:237154870 original size:47 final size:48
Alignment explanation
Indices: 237154791--237154908 Score: 154
Period size: 47 Copynumber: 2.5 Consensus size: 48
237154781 GCTTTATCAT
*
237154791 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
237154840 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
237154887 ATAACT-GGGCATAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
237154909 CACTTCCTCC
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
46 17 0.27
47 26 0.41
48 9 0.14
49 12 0.19
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:237154983 original size:20 final size:20
Alignment explanation
Indices: 237154958--237155017 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
237154948 TATGATTACC
237154958 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
237154978 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
237154998 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
237155018 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:237161264 original size:40 final size:40
Alignment explanation
Indices: 237161219--237161385 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
237161209 CGGAATATAA
237161219 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
237161259 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
237161299 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
237161339 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
237161378 CCGGATAT
1 CCGGATAT
237161386 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:237161369 original size:80 final size:79
Alignment explanation
Indices: 237161219--237161385 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
237161209 CGGAATATAA
* *
237161219 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
237161284 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
237161299 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
237161361 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
237161378 CCGGATAT
1 CCGGATAT
237161386 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:237162227 original size:17 final size:19
Alignment explanation
Indices: 237162204--237162249 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
237162194 AAGAAGCATG
237162204 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
237162222 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
237162240 AATCATGCTC
1 AATCATGCTC
237162250 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:237169250 original size:40 final size:40
Alignment explanation
Indices: 237169205--237169370 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
237169195 CGGAATATAA
237169205 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
237169245 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
237169285 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
237169324 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
237169363 CCGGATAT
1 CCGGATAT
237169371 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:237169327 original size:39 final size:38
Alignment explanation
Indices: 237169221--237169332 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
237169211 ATAATCACGT
* * *
237169221 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
237169261 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
237169300 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
237169333 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:237169354 original size:79 final size:78
Alignment explanation
Indices: 237169221--237169370 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
237169211 ATAATCACGT
*
237169221 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
237169286 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
237169300 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
237169363 CCGGATAT
64 CCGGATAT
237169371 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:237170215 original size:17 final size:19
Alignment explanation
Indices: 237170192--237170237 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
237170182 AAGAAGCATG
237170192 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
237170210 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
237170228 AATCATGCTC
1 AATCATGCTC
237170238 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:237172262 original size:13 final size:14
Alignment explanation
Indices: 237172244--237172272 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
237172234 ATATTATAAC
237172244 ATTTTGTGTTA-AA
1 ATTTTGTGTTAGAA
237172257 ATTTTGTGTTAGAA
1 ATTTTGTGTTAGAA
237172271 AT
1 AT
237172273 AATAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (14 bp):
ATTTTGTGTTAGAA
Found at i:237173622 original size:40 final size:40
Alignment explanation
Indices: 237173574--237173804 Score: 367
Period size: 40 Copynumber: 5.8 Consensus size: 40
237173564 TAACTAAGAT
237173574 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
237173614 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGT-
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
237173653 CCAAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
237173693 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
237173733 CCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
237173773 CCGAAGGCATTTGTGCGAGTTG-CTATATCCGG
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGG
237173805 CTTAATGCCG
Statistics
Matches: 178, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.21
40 139 0.78
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:237173708 original size:79 final size:79
Alignment explanation
Indices: 237173567--237173804 Score: 377
Period size: 79 Copynumber: 3.0 Consensus size: 79
237173557 GATAACCTAA
237173567 CTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
1 CTAAG-TCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
237173632 GTTACTATATCCGGG
65 GTTACTATATCCGGG
* * *
237173647 CTAAGTCCAAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAG
1 CTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
* *
237173712 TGATTATATCCGGG
66 TTACTATATCCGGG
* * *
237173726 CTAAGTCCCGAAGGCATTTGTGCTAGTGATTATATTCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 CTAAGT-CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA
*
237173791 GTTGCTATATCCGG
65 GTTACTATATCCGG
237173805 CTTAATGCCG
Statistics
Matches: 143, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
79 75 0.52
80 68 0.48
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.30
Consensus pattern (79 bp):
CTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
TTACTATATCCGGG
Found at i:237173818 original size:119 final size:119
Alignment explanation
Indices: 237173574--237173803 Score: 388
Period size: 119 Copynumber: 1.9 Consensus size: 119
237173564 TAACTAAGAT
*
237173574 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
*
237173639 TATCCGGGCTAAGTCCAAAGGCATTTGTGCTAGTTACTATATCCGAGCTAAGTC
66 TATCCGGGCTAAGTCCAAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
* *
237173693 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
* * *
237173758 TATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCG
66 TATCCGGGCTAAGT-CCAAAGGCATTTGTGCGAGTTACTATATCCG
237173804 GCTTAATGCC
Statistics
Matches: 103, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 75 0.73
120 28 0.27
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
TATCCGGGCTAAGTCCAAAGGCATTTGTGCGAGTTACTATATCCGAGCTAAGTC
Found at i:237178090 original size:30 final size:30
Alignment explanation
Indices: 237178054--237178154 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
237178044 GACAAGATTG
* * *
237178054 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
237178084 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
237178112 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
237178141 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
237178155 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:237178166 original size:29 final size:28
Alignment explanation
Indices: 237178083--237178158 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
237178073 AAAATTGTAC
* *
237178083 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
237178111 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
237178140 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
237178159 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:237185945 original size:30 final size:30
Alignment explanation
Indices: 237185909--237186009 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
237185899 GACAAGATTG
* * *
237185909 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
237185939 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
237185967 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
237185996 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
237186010 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:237186021 original size:29 final size:28
Alignment explanation
Indices: 237185938--237186013 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
237185928 AAAATTGTAC
* *
237185938 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
237185966 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
237185995 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
237186014 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:237187911 original size:39 final size:39
Alignment explanation
Indices: 237187807--237187917 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
237187797 TGCTGGAAAT
* * *
237187807 TATATCCGGGTTAAGACCCGAAGGCAATGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
* **
237187846 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGT-TT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGGC
*
237187885 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
237187918 ACGTGATTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 53 0.85
40 9 0.15
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:237192248 original size:40 final size:40
Alignment explanation
Indices: 237192136--237192288 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
237192126 GGATATAGCG
* * * * ***
237192136 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
237192176 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
237192216 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
237192256 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
237192289 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:237200299 original size:39 final size:40
Alignment explanation
Indices: 237200161--237200305 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
237200151 GCGACTCGCT
* * * *** * *
237200161 CAAAAGCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* * *
237200201 CAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
* **
237200241 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAAC-TAGCA
237200281 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
237200306 CATCATTCGA
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 24 0.28
40 61 0.72
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTAGCA
Found at i:237202955 original size:40 final size:40
Alignment explanation
Indices: 237202889--237203055 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
237202879 AAATTGAATG
* * *
237202889 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
237202928 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
237202968 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
237203008 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
237203048 ATATCCGG
1 ATATCCGG
237203056 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:237210936 original size:30 final size:30
Alignment explanation
Indices: 237210902--237210962 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
237210892 TCCTTAACTC
237210902 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
237210932 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
237210962 A
1 A
237210963 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:237215367 original size:30 final size:30
Alignment explanation
Indices: 237215333--237215393 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
237215323 TCCTTAACTC
237215333 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
237215363 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
237215393 A
1 A
237215394 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:237221336 original size:30 final size:29
Alignment explanation
Indices: 237221242--237221343 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
237221232 TATAGTGAAT
* * *
237221242 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
237221271 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
237221299 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
237221329 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
237221344 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:237228832 original size:28 final size:28
Alignment explanation
Indices: 237228800--237228864 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
237228790 ATTTACTAGA
*
237228800 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
237228828 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
237228856 ATACCCCTA
1 ATACCCCTA
237228865 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:237229011 original size:28 final size:28
Alignment explanation
Indices: 237228970--237229058 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 28
237228960 AGGAAGCATC
237228970 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
* *
237228998 CTGGTGGCCCTGCCAC--GTTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
237229024 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
237229053 CTGGTG
1 CTGGTG
237229059 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 24 0.46
28 21 0.40
29 7 0.13
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:237230166 original size:11 final size:11
Alignment explanation
Indices: 237230138--237230170 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
237230128 AGCCTGTAAG
237230138 TATTCTGAAT-
1 TATTCTGAATA
*
237230148 TTTTCTGAATA
1 TATTCTGAATA
237230159 TATTCTGAATA
1 TATTCTGAATA
237230170 T
1 T
237230171 CTGTCTGTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (11 bp):
TATTCTGAATA
Found at i:237234472 original size:533 final size:539
Alignment explanation
Indices: 237232720--237243835 Score: 20219
Period size: 532 Copynumber: 20.9 Consensus size: 539
237232710 GTTCAGCAAG
*
237232720 AATGATTTTCACGTTTTTGAAATCCTTCTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
* * *
237232785 ATGATGGAGGTCTAAGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237232850 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAGA
*
237232915 CTAACTTGTAAAAGTTGTAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
237232980 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTT-CAAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* * * *
237233043 CTAGGCTAAAAGTGTAAATAAGATAAAATTTAGGGGTAAAAATTTAATTTTTGCCATAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237233108 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
237233173 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
*
237233238 GTCCATTCTTGCCCCGTTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237233259 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237233324 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237233389 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
* *
237233454 TAACTTGTGAAAGTTGTAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
237233519 TTATGAAAGTGGTT-GGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
* *
237233582 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTCGACATAGTATG--AA
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
237233645 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-CAAATTTT-GTCATCTTCAACCCCTC
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237233708 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237233772 CCGTTCTT--CCCGTTTTT
521 CCGTTCTTGCCCCGTTTTT
237233789 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237233854 ATGATGAAGGTCTAGGGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237233918 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237233983 TAACTTGT-AAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
237234047 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
237234112 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
237234177 AATTTAGTAATTAAATGTTTAAA-AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237234241 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237234305 CCGTTCTTGCCCCGTTTTT
521 CCGTTCTTGCCCCGTTTTT
237234324 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
*
237234389 ATGATG-AGGTCTA-GGTTTGAACTATGTTATAAATTTGTGT-TTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237234451 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA-GA
*
237234516 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
237234581 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
237234646 CTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGG-AAAAAT-T-A-TTTTG---TAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237234703 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
237234768 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
237234832 GT-CGTTCTTG-CCC-TTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237234850 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237234915 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237234980 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA-GA
*
237235045 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
237235110 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTT-CAAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
237235174 CTAGGGTAAAAGTGTAAATA-GATAAAATTTAGGGG-AAAAAT-TAATTTTT--CGTAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237235234 AAAATTTAGTAATTAAATGTTTAAA-AAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
237235298 TCGGCC-AAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
237235361 GTCCGTTCTTGCCCCGTTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237235382 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237235447 ATGATGAAGGTCTA-GGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237235511 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA-GA
*
237235576 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
237235641 AGTTATGAAAGTGGTTCGGCTAGGCTTAAGGTGAAAATAAATTGAATGAAAATTATTTTA-AAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
237235705 CTAGGGT-AAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAA-TTTTGCCATAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237235768 -AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
237235831 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
237235895 GTCCGTTCTTGCCCCGTTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237235916 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237235981 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237236046 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
*
237236111 TAA-TTGTGAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
* *
237236175 TTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTA-AAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
237236238 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTT-CCATAGTATGAT-A
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
237236301 AATTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAG-CAAATTTT-GTCATCTTCAACCCCTC
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237236363 GGCCGAAATTTTGAAGACCA-CATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237236426 CCGTTCTTG-CCCGTTTTT
521 CCGTTCTTGCCCCGTTTTT
*
237236444 AATGATTTTCACGATTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237236509 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237236574 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAGA
* *
237236639 CTAACTTGTGAAAGTTGTAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAA-TTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
237236704 AGTTATGAAAGTGGTT-GGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
*
237236767 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-TAATTTTTGACATAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237236831 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
*
237236896 TTGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
*
237236961 GTCCGTTCTTG-CCTG-TTTT
519 GTCCGTTCTTGCCCCGTTTTT
*
237236980 AATGATTTTCGCGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
*
237237045 ATGATGAAGGTCTAGGGTTTGAACTATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237237110 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237237175 TAACTTGT-AAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
237237239 TTATGAAAGTGGTTC-GCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
*
237237302 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGATAA
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
237237367 AATTTAGTAATTAAATGTTTAAATAAACAAAA-AAAAGCCAAATTTTGGTCATCTTCAACCCCT-
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237237430 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237237494 CCGTTCTTG-CCCGTTTTT
521 CCGTTCTTGCCCCGTTTTT
237237512 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237237577 ATGATG-AGGTCTA-GGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237237639 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237237704 TAACTTGTAAAAGTT-TAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
196 TAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
237237768 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTT-CAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
* *
237237832 TAGGGTAAAAGTGTAAATAAGATAAAATTTAGGGGCAAAAATTTAATTTTT-CCATAGTATGATA
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237237896 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237237960 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAG-TCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237238024 TCCGTTCTTGCCCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237238044 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237238109 ATGATG-AGGTCTA-GGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237238171 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237238236 TAA-TTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
196 TAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
237238300 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
237238365 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237238429 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237238493 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237238558 TCCGTTCTTGCCCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237238578 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237238643 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237238708 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237238773 TAACTTGTAAAAGTTAT-AAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
*
237238837 TTATGAAAGTGGTT-GGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
*
237238900 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATG--AA
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
*
237238963 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAG-AAAATTTT-GTCATCTTCAACCCCTC
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237239026 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237239091 CCGTTCTTGCCCCGTTTTT
521 CCGTTCTTGCCCCGTTTTT
237239110 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237239175 ATGATGAAGGTCTA-GGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237239238 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAGA
*
237239303 CTAACTTGTAAAAGTTGTAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
*
237239368 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGT
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
* * *
237239433 TTAGGGTATAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTCTGCCATAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237239498 -AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTT-GTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
237239561 TCGGCCGAAA-TTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
237239625 GTCCGTTCTTGCCCCGTTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237239646 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237239711 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237239776 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
*
237239841 TAATTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
* *
237239906 TTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGCCT
261 TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
237239970 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTG-CATAGTATGA-AA
326 AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
*
237240033 ATTTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAG-CAAATTTTGGTCATCTTCAACCCCTC
391 AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
237240096 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAGT
456 GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
237240160 CCG---TT----C-----T
521 CCGTTCTTGCCCCGTTTTT
237240167 --TG---TTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237240227 ATGATGAAGGTCTA-GGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237240291 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAGA
*
237240356 CTAACTTGTGAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
195 CTAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
237240421 GTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
237240485 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT-
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237240549 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237240614 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237240679 TCCGTTCTTGCCCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237240699 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237240764 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237240829 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAAGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCT-AAAAAGA
* * *
237240894 CTAACTTGTGAAAGTTGTAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
195 CTAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
* *
237240959 GTTATGAAAGTGGTTTGGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTA-AAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
*
237241022 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTACCATAGTATGAT-
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237241086 AAATTTAGTAATTAAATGTTTAAATAAA-AAAATAAAAG-CAAATTTT-GTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237241148 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTT-TTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237241212 TCCGTTCTTG-CCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237241231 AATGATTTT-ACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237241295 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237241360 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
*
237241425 TAACTTGTGAAAGTT-TAAAATTTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
196 TAACTTGTAAAAGTTATAAAA-TTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
*
237241489 GTTATGAAAGTGGTT-GGCTAGGCTTAAGGTGAAAATAAATTGAATG-AAATTATTTTACAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
*
237241552 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAA--TAATTTTTGACATAGTATGATA
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237241615 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
*
237241680 TGGCCG-AATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
*
237241744 TCCGTTCTTG-CCTG-TTTT
520 TCCGTTCTTGCCCCGTTTTT
237241762 AATGATTTTCACGTTTTTGAAATCCTT-TAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237241826 ATGATGAAGGTCTAGGGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237241890 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
*
237241955 TAACTTGT-AAAGTTGTAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
196 TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
*
237242019 TTATGAAAGTGATTTC-GCTAGGCTTAAAGTGAAAATAAATTGAATG-AAATTATTTTACAAGCC
261 TTATGAAAGTG-GTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
*
237242082 TAGGGATAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGACATAGTATGAT
325 TAGGG-TAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
* *
237242147 AAAATTTACTAATTAAATGTTTAAATAAACAAAACAAAAGCCAAATTTTGGTCATCTTCAACCCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCC
*
237242212 T-GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGGTCCATAGTAA
454 TCGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAA
*
237242276 GCCCGTTCTTGCCCCGTTTTT
519 GTCCGTTCTTGCCCCGTTTTT
237242297 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237242362 ATG--GAAGGTCTA-GGTTTGAA-CATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237242423 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
237242488 TAACTTGTAAAAGTT-TAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
196 TAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
237242552 GTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATG-AAATTATTTTACAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
237242615 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATG--A
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
*
237242678 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAA--AAAATTTTGGTCATCTTCAACCCCT
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237242741 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237242806 TCCGTTCTT--CCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237242824 AATGATTTTCACGTTTTTGAAATCCTTGT-ACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237242888 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237242953 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
*
237243018 TAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
196 TAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATA
237243083 GTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
260 GTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCC
237243147 TAGGGTAAAAGTGTAAATATGATAAAATTTA-GGGCAAAAAT-TAATTTTTGCCATAGTATGATA
325 TAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATA
237243210 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAA-CCC-
390 AAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCT
237243273 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
455 CGGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAG
237243338 T-CGTTCTTGCCCCGTTTTT
520 TCCGTTCTTGCCCCGTTTTT
237243357 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
1 AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
237243422 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
66 ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
237243487 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGGA
131 ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAA-GA
*
237243552 CTAATTTGTAAAAGTTATAAAATTTGTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
195 CTAACTTGTAAAAGTTATAAAATTT-TCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTAT
237243617 AGTTATGAAAGTGGTTCGGCTAGGCTT-AAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
259 AGTTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGC
237243681 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAAT-T-ATTTTTGCCATAGTATGAT
324 CTAGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGAT
237243744 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTTGGTCATCTTCAACCC
389 AAAATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAA-TTTTGGTCATCTTCAACCC
237243809 CTCGGCCGAAA-TTTGAAGACCACCATG
453 CTCGGCCGAAATTTTGAAGACCACCATG
237243836 NNNNNNNNNN
Statistics
Matches: 10338, Mismatches: 91, Indels: 298
0.96 0.01 0.03
Matches are distributed among these distances:
515 126 0.01
516 236 0.02
517 37 0.00
518 10 0.00
519 64 0.01
520 31 0.00
521 1 0.00
523 2 0.00
526 115 0.01
527 49 0.00
528 431 0.04
529 898 0.09
530 1100 0.11
531 1141 0.11
532 1315 0.13
533 1219 0.12
534 926 0.09
535 776 0.08
536 765 0.07
537 529 0.05
538 365 0.04
539 202 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (539 bp):
AATGATTTTCACGTTTTTGAAATCCTTGTAACATGATCTACCTATTTCTACCATTTATTTGAGTT
ATGATGAAGGTCTAGGGTTTGAACCATGTTATAAATTTGTGTATTTTGATGTTTAATGGTAGATT
ATGCATGTTTATGGTTGGAGAAACAACTTTTGCTAAGTGATTTTCAATGAAAATGCTAAAAAGAC
TAACTTGTAAAAGTTATAAAATTTTCATAAAAGTGTGATTTAGTGGAAATTGTGGGTTTTTATAG
TTATGAAAGTGGTTCGGCTAGGCTTAAAGTGAAAATAAATTGAATGAAAATTATTTTACAAGCCT
AGGGTAAAAGTGTAAATATGATAAAATTTAGGGGCAAAAATGTAATTTTTGCCATAGTATGATAA
AATTTAGTAATTAAATGTTTAAATAAACAAAATAAAAGCCAAATTTTGGTCATCTTCAACCCCTC
GGCCGAAATTTTGAAGACCACCATGGCTAGGGTTTTGTTTAAGCTTTCCAAGCTCCATAGTAAGT
CCGTTCTTGCCCCGTTTTT
Found at i:237251065 original size:27 final size:28
Alignment explanation
Indices: 237251004--237251102 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
237250994 AAATTTGTAC
* *
237251004 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
237251032 AGCACTAAGTGTGCGAG-CTGAATATAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
* *
237251059 GGCACTAAGTGTGCGTGATC-GAATAT-T
1 AGCACTAAGTGTGCGAG-TCTGAATATAT
*
237251086 AAGCACTATGTGTGCGA
1 -AGCACTAAGTGTGCGA
237251103 ACTCTATATA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
27 24 0.39
28 36 0.59
29 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:237251112 original size:55 final size:55
Alignment explanation
Indices: 237251005--237251113 Score: 130
Period size: 55 Copynumber: 2.0 Consensus size: 55
237250995 AATTTGTACA
* * * * *
237251005 GCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTGAATATATG
1 GCACTAAGTGTGCGAGATCGAATATATAGCACTAAGTGTGCGAACTCAATATATG
* * *
237251060 GCACTAAGTGTGCGTGATCGAATAT-TAAGCACTATGTGTGCGAACTCTATATAT
1 GCACTAAGTGTGCGAGATCGAATATAT-AGCACTAAGTGTGCGAACTCAATATAT
237251114 ATATTTCCGA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (55 bp):
GCACTAAGTGTGCGAGATCGAATATATAGCACTAAGTGTGCGAACTCAATATATG
Found at i:237253224 original size:40 final size:39
Alignment explanation
Indices: 237253059--237253242 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
237253049 AAATTGAATG
* * *
237253059 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
237253099 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
237253139 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
237253179 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
237253218 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
237253243 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:237253267 original size:80 final size:81
Alignment explanation
Indices: 237253099--237253287 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
237253089 GCTGGAAATT
* * * *
237253099 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
237253164 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
237253180 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
237253243 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
237253259 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
237253288 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:237261152 original size:40 final size:39
Alignment explanation
Indices: 237260987--237261170 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
237260977 AAATTGAATG
* * *
237260987 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
237261027 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
237261067 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
237261107 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
237261146 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
237261171 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:237261195 original size:80 final size:81
Alignment explanation
Indices: 237261027--237261215 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
237261017 GCTGGAAATT
* * * *
237261027 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
237261092 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
237261108 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
237261171 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
237261187 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
237261216 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:237265420 original size:39 final size:40
Alignment explanation
Indices: 237265366--237265503 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
237265356 AAACCAAGTA
* * * *
237265366 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
237265405 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
237265445 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
237265485 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
237265504 TTATCATCCG
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.14
40 78 0.86
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:237265443 original size:40 final size:40
Alignment explanation
Indices: 237265399--237265507 Score: 209
Period size: 40 Copynumber: 2.7 Consensus size: 40
237265389 GCTACTTGCT
237265399 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
237265439 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
237265479 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
237265508 CATCCGAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:237273409 original size:39 final size:40
Alignment explanation
Indices: 237273355--237273492 Score: 208
Period size: 40 Copynumber: 3.5 Consensus size: 40
237273345 AAACCAAGTA
* * * *
237273355 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
237273394 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
237273434 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
237273474 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
237273493 TTATCATCCG
Statistics
Matches: 91, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
39 13 0.14
40 78 0.86
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:237273432 original size:40 final size:40
Alignment explanation
Indices: 237273388--237273496 Score: 209
Period size: 40 Copynumber: 2.7 Consensus size: 40
237273378 GCTACTTGCT
237273388 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
237273428 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
237273468 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
237273497 CATCCGAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:237282619 original size:29 final size:29
Alignment explanation
Indices: 237282585--237282716 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
237282575 TACTCGATTT
** * *
237282585 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
237282614 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
237282643 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
237282672 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
237282701 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
237282717 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:237290560 original size:29 final size:29
Alignment explanation
Indices: 237290526--237290657 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
237290516 TACTCGATTT
** * *
237290526 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
237290555 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
237290584 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
237290613 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
237290642 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
237290658 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:237296385 original size:40 final size:40
Alignment explanation
Indices: 237296340--237296469 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
237296330 CGGAATACAA
237296340 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
237296380 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
237296420 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
237296460 CCGGATATAA
1 CCGGATATAA
237296470 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:237300703 original size:49 final size:49
Alignment explanation
Indices: 237300567--237300920 Score: 563
Period size: 49 Copynumber: 7.3 Consensus size: 49
237300557 GCCTTCGGGA
* * * * * *
237300567 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
237300614 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
237300661 CTTATCACATATATATACACTTTCACATTCATTACACCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237300710 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237300761 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237300810 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237300859 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237300908 CTTATCACATATA
1 CTTATCACATATA
237300921 CTATCATGTA
Statistics
Matches: 289, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 46 0.16
49 195 0.67
51 47 0.16
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:237304994 original size:40 final size:40
Alignment explanation
Indices: 237304962--237305352 Score: 633
Period size: 40 Copynumber: 9.8 Consensus size: 40
237304952 CCAGCATGAT
* * * *
237304962 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
237305002 TGCTCTTCGAGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
237305042 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237305082 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237305122 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237305161 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
237305201 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237305241 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237305281 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237305321 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
237305353 CTCAATTCTC
Statistics
Matches: 330, Mismatches: 18, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 39 0.12
40 289 0.88
41 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:237305302 original size:199 final size:200
Alignment explanation
Indices: 237304962--237305352 Score: 685
Period size: 199 Copynumber: 2.0 Consensus size: 200
237304952 CCAGCATGAT
* **
237304962 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGGTTTAGCACGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
*
237305027 TATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGA
66 CATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGA
237305092 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGC
131 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGC
237305156 ACGAA
196 ACGAA
* * * *
237305161 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
* *
237305226 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGA
66 CATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGA
237305291 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
131 GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
237305353 CTCAATTCTC
Statistics
Matches: 181, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
199 158 0.87
200 23 0.13
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (200 bp):
TGCTCTTCGGGACCTAGCCCGGATACAACACCAGCACGAATGCTCTTCGAGACTTAGCACGGATA
CATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGA
GACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGC
ACGAA
Found at i:237306928 original size:49 final size:49
Alignment explanation
Indices: 237306774--237307077 Score: 483
Period size: 49 Copynumber: 6.3 Consensus size: 49
237306764 GCCTTCGGGA
* * * * * *
237306774 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
237306821 CCTATCAC--ATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237306867 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237306916 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237306967 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237307016 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237307065 CTTATCACATATA
1 CTTATCACATATA
237307078 CTATCATGTA
Statistics
Matches: 243, Mismatches: 7, Indels: 12
0.93 0.03 0.05
Matches are distributed among these distances:
46 17 0.07
47 29 0.12
48 27 0.11
49 121 0.50
51 49 0.20
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:237306989 original size:100 final size:98
Alignment explanation
Indices: 237306774--237307077 Score: 483
Period size: 100 Copynumber: 3.1 Consensus size: 98
237306764 GCCTTCGGGA
* * * * * * *
237306774 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGACCCTATCAC--ATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
237306835 ACACTTTCACATTCATCACAT-GGCCATTCGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
237306867 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
237306932 ATACACTTTCACATTCATCACATCGGCCATTAGGC
64 ATACACTTTCACATTCATCACATCGGCCATTAGGC
237306967 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
237307032 ACACTTTCACATTCATCACATCGGCCATTAGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
237307065 CTTATCACATATA
1 CTTATCACATATA
237307078 CTATCATGTA
Statistics
Matches: 196, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
93 10 0.05
94 1 0.01
95 37 0.19
98 54 0.28
99 27 0.14
100 67 0.34
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (98 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:237307052 original size:149 final size:146
Alignment explanation
Indices: 237306785--237307077 Score: 487
Period size: 149 Copynumber: 2.0 Consensus size: 146
237306775 TTATCACATT
* * *
237306785 TATACACTTTCACATCCATCACGTTGGCCACTCGACCCTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATCGGCCACTAGACCCTATCACATATATACACTTTCACATTCA
*
237306850 TCACATGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
66 TCACATGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
237306915 CCTTATCACATATATA
131 CCTTATCACATATATA
* * * *
237306931 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATCCATCACATCGGCCACTAGACCCTATCAC--ATATATACACTTTCACATT
237306996 CATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
64 CATCACAT-GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATT
237307061 AGGCCTTATCACATATA
128 AGGCCTTATCACATATA
237307078 CTATCATGTA
Statistics
Matches: 136, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
146 37 0.27
148 27 0.20
149 72 0.53
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (146 bp):
TATACACTTTCACATCCATCACATCGGCCACTAGACCCTATCACATATATACACTTTCACATTCA
TCACATGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATA
Found at i:237311156 original size:40 final size:40
Alignment explanation
Indices: 237311124--237311472 Score: 551
Period size: 40 Copynumber: 8.8 Consensus size: 40
237311114 CCAGCATGAT
* * * *
237311124 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
237311164 TGCTCTTCGGG-TTTAGCACGGATATATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237311203 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237311243 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237311283 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237311323 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237311362 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237311402 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
237311442 TGCTCTTC-GGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
237311473 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 18, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
39 92 0.32
40 197 0.68
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:237311336 original size:119 final size:119
Alignment explanation
Indices: 237311124--237311472 Score: 565
Period size: 119 Copynumber: 2.9 Consensus size: 119
237311114 CCAGCATGAT
* * * * * *
237311124 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* * *
237311188 TATCGCTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCG-GACTTAGCCCGGATACATCACTAGCACGAA
* *
237311243 TGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
237311308 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
* *
237311362 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
237311427 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACT
66 CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACT
237311473 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
119 182 0.85
120 32 0.15
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:237311413 original size:159 final size:159
Alignment explanation
Indices: 237311124--237311472 Score: 592
Period size: 159 Copynumber: 2.2 Consensus size: 159
237311114 CCAGCATGAT
* * * * ** *
237311124 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGTTTAGCACGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCACGGATAC
*
237311189 ATCGCTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAG
66 ATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAG
237311254 ACTTAGCCCGGATACATCACTAGCACGAA
131 ACTTAGCCCGGATACATCACTAGCACGAA
*
237311283 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATAC
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCACGGATAC
* *
237311348 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAG
66 ATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAG
237311413 ACTTAGCCCGGATACATCACTAGCACGAA
131 ACTTAGCCCGGATACATCACTAGCACGAA
237311442 TGCTCTTC-GGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
237311473 CTCAATTCTC
Statistics
Matches: 179, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
158 23 0.13
159 156 0.87
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.22
Consensus pattern (159 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGACTTAGCACGGATAC
ATCACTAGCACGAATGCTCATCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCATCGAG
ACTTAGCCCGGATACATCACTAGCACGAA
Found at i:237312967 original size:49 final size:49
Alignment explanation
Indices: 237312896--237313151 Score: 480
Period size: 49 Copynumber: 5.3 Consensus size: 49
237312886 CCCTTCGGGA
*
237312896 CTTATCAC--ATATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237312943 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237312992 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237313041 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
237313090 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
237313139 CTTACCACATATA
1 CTTATCACATATA
237313152 CTATCATGTA
Statistics
Matches: 205, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 8 0.04
49 197 0.96
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:237319717 original size:40 final size:40
Alignment explanation
Indices: 237319658--237319826 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
237319648 CGGGACTTTA
* * *
237319658 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
237319698 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
237319738 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
237319778 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
237319818 CCCGGATAT
1 CCCGGATAT
237319827 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:237327722 original size:40 final size:40
Alignment explanation
Indices: 237327663--237327831 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
237327653 CGGGACTTTA
* * *
237327663 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
237327703 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
237327743 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
237327783 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
237327823 CCCGGATAT
1 CCCGGATAT
237327832 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:237333501 original size:29 final size:29
Alignment explanation
Indices: 237333462--237333540 Score: 149
Period size: 29 Copynumber: 2.7 Consensus size: 29
237333452 TTTTTTTTTC
237333462 CCAGCATGCACACTTAGTGCCATATATTT
1 CCAGCATGCACACTTAGTGCCATATATTT
237333491 CCAGCATGCACACTTAGTGCCATATATTT
1 CCAGCATGCACACTTAGTGCCATATATTT
*
237333520 CCAGCACGCACACTTAGTGCC
1 CCAGCATGCACACTTAGTGCC
237333541 TATCTCGTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CCAGCATGCACACTTAGTGCCATATATTT
Found at i:237336819 original size:29 final size:28
Alignment explanation
Indices: 237336787--237336889 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
237336777 GTGACGAGAT
* *
237336787 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
237336816 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
237336845 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
237336874 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
237336890 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:237342775 original size:29 final size:29
Alignment explanation
Indices: 237342743--237342815 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
237342733 CTTCGAGCTC
*
237342743 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
237342772 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
237342801 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
237342816 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:237350707 original size:29 final size:29
Alignment explanation
Indices: 237350675--237350747 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
237350665 CTTCGAGCTC
*
237350675 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
237350704 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
237350733 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
237350748 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:237364353 original size:40 final size:40
Alignment explanation
Indices: 237364308--237364475 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
237364298 CGGAATACAA
237364308 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
237364348 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
237364388 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
237364428 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
237364468 CCGGATAT
1 CCGGATAT
237364476 CATTCAATTG
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 100 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:237367820 original size:3 final size:3
Alignment explanation
Indices: 237367812--237367999 Score: 132
Period size: 3 Copynumber: 63.7 Consensus size: 3
237367802 TAATATTTCA
** *
237367812 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT ATT ACC AAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * ** *
237367858 ATT GTT ACT ATT ACT ATT ATT TTT ATT ACT ATT ATT ACC ACT ATT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
237367905 CGTT ATA ATT ACT ATT ACT ATT ATT TTT ATT ACT ATT ATT ATT ACT
1 -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
237367951 ATT TTT GTT ATT ATT ATT ATT ACT ATT -GT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
237367998 AT
1 AT
237368000 ATTTTCTTTC
Statistics
Matches: 140, Mismatches: 41, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
2 7 0.05
3 131 0.94
4 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:237367933 original size:51 final size:51
Alignment explanation
Indices: 237367862--237367995 Score: 198
Period size: 51 Copynumber: 2.6 Consensus size: 51
237367852 ACCAATATTG
237367862 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
1 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
** * *
237367913 TTACTATTACTATTATTTTTATTACTATTATTATTACTATTTTTGTTATTA
1 TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
* * *
237367964 TTATTATTACTATT-GTATTATTACTATTATTA
1 TTACTATTACTATTATTTTTATTACTATTATTA
237367996 TTATATTTTC
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
50 16 0.21
51 60 0.79
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (51 bp):
TTACTATTACTATTATTTTTATTACTATTATTACCACTATTTTCGTTATAA
Found at i:237382608 original size:32 final size:32
Alignment explanation
Indices: 237382541--237382720 Score: 243
Period size: 32 Copynumber: 5.6 Consensus size: 32
237382531 CCCGAGGTGC
* *
237382541 ACATTCCCTTTTCAAATGGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGT-GTACACACAAAGTGT
* *
237382574 ACATTTCCTTTTCAAGTGTGCACACAAAGGGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
* *
237382606 ACATTTTCTTTTCAAGTGCACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
** * *
237382638 ACAAATACTTTTCAAGTGTACATACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
237382670 ACGTTTCCTTTTCAAGTGTACACACAAAGTGT
1 ACATTTCCTTTTCAAGTGTACACACAAAGTGT
*
237382702 ACGTTTCCTTTTCAAGTGT
1 ACATTTCCTTTTCAAGTGT
237382721 CACCCTTTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
32 114 0.88
33 15 0.12
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (32 bp):
ACATTTCCTTTTCAAGTGTACACACAAAGTGT
Found at i:237389658 original size:26 final size:26
Alignment explanation
Indices: 237389622--237389749 Score: 173
Period size: 26 Copynumber: 5.2 Consensus size: 26
237389612 TGATACAAAT
237389622 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
237389648 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
237389674 TGAT-A-A---TAGGT-AATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
237389694 TG--AATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
237389718 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
237389744 TGATAA
1 TGATAA
237389750 GAATTTCATG
Statistics
Matches: 90, Mismatches: 4, Indels: 16
0.82 0.04 0.15
Matches are distributed among these distances:
19 1 0.01
20 11 0.12
21 5 0.06
23 5 0.06
24 12 0.13
25 1 0.01
26 55 0.61
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:237389701 original size:18 final size:20
Alignment explanation
Indices: 237389659--237389720 Score: 63
Period size: 20 Copynumber: 2.9 Consensus size: 20
237389649 GATAATAGGT
*
237389659 TAGGTAAATGTTTCATGATAA
1 TAGGTAAATGTTCCATGA-AA
237389680 TAGGT-AATGTTCCATGAATA
1 TAGGTAAATGTTCCATGAA-A
237389700 GGTTAGGTAAATGTTCCATGA
1 ---TAGGTAAATGTTCCATGA
237389721 TAATGGGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 1 0.03
20 12 0.34
21 5 0.14
23 5 0.14
24 12 0.34
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (20 bp):
TAGGTAAATGTTCCATGAAA
Found at i:237389707 original size:44 final size:46
Alignment explanation
Indices: 237389633--237389724 Score: 152
Period size: 44 Copynumber: 2.0 Consensus size: 46
237389623 GATAATAGGT
*
237389633 TAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTTCATGATAA
1 TAGGTAAATGTTCCATGA-AATAGGTTAGGTAAATGTTCCATGATAA
237389680 TAGGT-AATGTTCCATG-AATAGGTTAGGTAAATGTTCCATGATAA
1 TAGGTAAATGTTCCATGAAATAGGTTAGGTAAATGTTCCATGATAA
237389724 T
1 T
237389725 GGGTTAGGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
44 28 0.64
46 11 0.25
47 5 0.11
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.36
Consensus pattern (46 bp):
TAGGTAAATGTTCCATGAAATAGGTTAGGTAAATGTTCCATGATAA
Found at i:237391750 original size:136 final size:136
Alignment explanation
Indices: 237391506--237391790 Score: 500
Period size: 136 Copynumber: 2.1 Consensus size: 136
237391496 GAGTAGTCTC
237391506 CCCAAATGGGCTTGCATATGTTTACTGATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
237391571 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATCA
66 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
237391636 CTGTTA
131 CTGTTA
* *
237391642 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
237391706 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
237391771 ACTGTTA
130 ACTGTTA
**
237391778 CCTGAATGGGCTT
1 CCCAAATGGGCTT
237391791 AGGCCCAATG
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
135 56 0.39
136 86 0.61
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATATTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:237393041 original size:12 final size:11
Alignment explanation
Indices: 237393024--237393072 Score: 52
Period size: 10 Copynumber: 4.6 Consensus size: 11
237393014 ACTCGGGGAA
237393024 GAGGCCGTGGTC
1 GAGGCCG-GGTC
237393036 GAGGCC--GTC
1 GAGGCCGGGTC
237393045 GA-GCCGTGGTC
1 GAGGCCG-GGTC
237393056 GAGGCC-GGTC
1 GAGGCCGGGTC
237393066 GAGGCCG
1 GAGGCCG
237393073 AGGTAGTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
8 3 0.09
9 5 0.16
10 10 0.31
11 5 0.16
12 9 0.28
ACGTcount: A:0.10, C:0.29, G:0.49, T:0.12
Consensus pattern (11 bp):
GAGGCCGGGTC
Found at i:237393052 original size:20 final size:21
Alignment explanation
Indices: 237393027--237393068 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
237393017 CGGGGAAGAG
237393027 GCCGTGGTCGAGGCC-GTCGA
1 GCCGTGGTCGAGGCCGGTCGA
237393047 GCCGTGGTCGAGGCCGGTCGA
1 GCCGTGGTCGAGGCCGGTCGA
237393068 G
1 G
237393069 GCCGAGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.10, C:0.29, G:0.48, T:0.14
Consensus pattern (21 bp):
GCCGTGGTCGAGGCCGGTCGA
Found at i:237397981 original size:26 final size:26
Alignment explanation
Indices: 237397946--237398080 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
237397936 TGATACAAAT
237397946 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
237397972 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
237397998 T-ATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
237398023 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
237398049 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
237398075 TGATAA
1 TGATAA
237398081 GAATTTCATG
Statistics
Matches: 103, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
25 23 0.22
26 80 0.78
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:237398004 original size:51 final size:52
Alignment explanation
Indices: 237397946--237398080 Score: 227
Period size: 51 Copynumber: 2.6 Consensus size: 52
237397936 TGATACAAAT
* *
237397946 TGATAATAGGTTAGGTAAATGTTTCATAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
* *
237397998 T-ATAATAGGTTAGGTAAGTGTTCCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
237398049 TGATAATAGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAA
237398081 GAATTTCATG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
51 47 0.62
52 29 0.38
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:237399591 original size:26 final size:26
Alignment explanation
Indices: 237399562--237399614 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
237399552 TTTACAGTTT
237399562 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
237399588 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
237399614 T
1 T
237399615 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:237400143 original size:136 final size:136
Alignment explanation
Indices: 237399862--237400146 Score: 509
Period size: 135 Copynumber: 2.1 Consensus size: 136
237399852 GAGTAGTCTC
237399862 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
237399927 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAGGGCTTTGGCCCAGTATCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAGGGCTCTGGCCCAGTACCA
237399992 CTGTTA
131 CTGTTA
*
237399998 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
237400062 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCT-AAAAGGGCTCTGGCCCAGTACC
237400127 ACTGTTA
130 ACTGTTA
**
237400134 CCTGAATGGGCTT
1 CCCAAATGGGCTT
237400147 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 85 0.59
136 58 0.41
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:237412497 original size:8 final size:8
Alignment explanation
Indices: 237412484--237412522 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
237412474 ATCGACAAAA
237412484 GCCGAAAT
1 GCCGAAAT
237412492 GCCGAAAT
1 GCCGAAAT
*
237412500 GCCGAAAA
1 GCCGAAAT
*
237412508 GTCGAAAT
1 GCCGAAAT
237412516 GCCGAAA
1 GCCGAAA
237412523 AGGTGAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:237414741 original size:77 final size:78
Alignment explanation
Indices: 237414652--237414802 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 78
237414642 AATGTTCGAG
237414652 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
237414716 AATTGTGCGATTA
66 AATTGTGCGATTA
* * * *
237414729 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
*
237414794 ATTTGTGCG
66 AATTGTGCG
237414803 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
77 51 0.75
78 17 0.25
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGATTA
Found at i:237414800 original size:40 final size:39
Alignment explanation
Indices: 237414651--237414802 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
237414641 AAATGTTCGA
* *
237414651 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
237414690 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGA-TT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
237414728 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
237414767 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
237414803 GGTTACCATA
Statistics
Matches: 104, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 36 0.35
39 51 0.49
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:237414818 original size:40 final size:39
Alignment explanation
Indices: 237414652--237414833 Score: 213
Period size: 39 Copynumber: 4.6 Consensus size: 39
237414642 AATGTTCGAG
*** *
237414652 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGGGTTA
* *
237414691 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGC-GATTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGGGTTA
* *
237414729 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGGGTTA
* *
237414768 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGGGTTA
** * *
237414808 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
237414834 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 35 0.28
39 49 0.39
40 41 0.33
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGGGTTA
Found at i:237414854 original size:80 final size:77
Alignment explanation
Indices: 237414658--237414857 Score: 195
Period size: 77 Copynumber: 2.6 Consensus size: 77
237414648 CGAGTGATAT
** * * * *
237414658 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
** *
237414723 CGATTATGATAT
66 CGATTACCATAA
** * * *
237414735 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAG-CCCGAAGGCAATTGT
*
237414800 GCGGGTTACCATAA
65 GC-GATTACCATAA
* **
237414814 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGG
237414858 ATAAACTCCG
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
77 45 0.43
78 16 0.15
79 16 0.15
80 26 0.25
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGGCTAAGCCCGAAGGCAATTGTG
CGATTACCATAA
Found at i:237422655 original size:38 final size:39
Alignment explanation
Indices: 237422596--237422746 Score: 225
Period size: 38 Copynumber: 3.9 Consensus size: 39
237422586 AAATGTTCGA
*
237422596 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
237422634 GTGACATACGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
237422673 ATGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
237422711 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
237422747 GGTTACCATA
Statistics
Matches: 101, Mismatches: 9, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
38 68 0.67
39 17 0.17
40 16 0.16
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:237422684 original size:77 final size:78
Alignment explanation
Indices: 237422597--237422776 Score: 238
Period size: 77 Copynumber: 2.3 Consensus size: 78
237422587 AATGTTCGAG
237422597 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATTGTGACATACGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAATTGTGACATACGGGCTAAGTCCCGAAGGC
237422660 AATTGTGCGAGTTA
65 AATTGTGCGAGTTA
* * * *
237422674 TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAATTGTGACATACGGGCTAAGTCCCGAAGGCA
* *
237422739 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
** * *
237422752 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAG-CCGAAGGC
237422777 GTTTGAACGA
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
76 16 0.18
77 33 0.37
78 33 0.37
79 8 0.09
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAATTGTGACATACGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTA
Found at i:237422762 original size:40 final size:38
Alignment explanation
Indices: 237422597--237422776 Score: 200
Period size: 38 Copynumber: 4.6 Consensus size: 38
237422587 AATGTTCGAG
* *
237422597 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATTG
1 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTA
* *
237422635 TGACATACGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTA
*
237422674 TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAGTTA
* * *
237422712 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG--CCGAAGGCAATTGTGCGAGTTA
** * *
237422752 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAG-CCGAAGGC
237422777 GTTTGAACGA
Statistics
Matches: 122, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
38 67 0.55
39 25 0.20
40 30 0.25
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.23
Consensus pattern (38 bp):
TGATATCCGGGCTAAGCCGAAGGCAATTGTGCGAGTTA
Done.