Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 750 of 770
Found at i:237795941 original size:29 final size:29
Alignment explanation
Indices: 237795908--237795981 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
237795898 CCTTCGAGCT
237795908 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
237795937 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
237795966 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
237795982 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:237798891 original size:17 final size:18
Alignment explanation
Indices: 237798849--237798897 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
237798839 AGTTGAAAAG
237798849 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
237798868 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
237798885 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
237798898 GCTTTCTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:237806861 original size:17 final size:18
Alignment explanation
Indices: 237806819--237806867 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
237806809 AGTTGAAAAG
237806819 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
237806838 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
237806855 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
237806868 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:237807753 original size:40 final size:40
Alignment explanation
Indices: 237807687--237807853 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
237807677 AAATTGAATG
* * *
237807687 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
237807726 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
237807766 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
237807806 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
237807846 ATATCCGG
1 ATATCCGG
237807854 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:237817028 original size:40 final size:38
Alignment explanation
Indices: 237816984--237817126 Score: 133
Period size: 40 Copynumber: 3.6 Consensus size: 38
237816974 CTGAAAATTT
* *
237816984 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAG-TA
* *
237817024 TATCCGGGCTAAGACTCGAAGGCATTCGTGCAAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAG-TA
* * * *
237817064 AATCCGGGCTAAGACCCGAAGGCGTTTGTGCAAATCGTGA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGT-A
* * *
237817104 TATCCGGGTTAAGTCCCGTAGGC
1 TATCCGGGCTAAGACCCGAAGGC
237817127 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.05
40 80 0.93
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGTA
Found at i:237822558 original size:40 final size:40
Alignment explanation
Indices: 237822450--237822659 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
237822440 CGGGATTTAA
* * * * *
237822450 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
237822490 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237822530 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237822570 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237822610 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237822650 CCGGATATAT
1 CCGGATATAT
237822660 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:237830694 original size:40 final size:40
Alignment explanation
Indices: 237830586--237830795 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
237830576 CGGGATTTAA
* * * * *
237830586 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
237830626 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237830666 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237830706 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237830746 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
237830786 CCGGATATAT
1 CCGGATATAT
237830796 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:237833827 original size:32 final size:32
Alignment explanation
Indices: 237833791--237833854 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
237833781 TCATGGAGAT
*
237833791 ACTTTTAAGAATACTTTATCTCTGACTTGGAA
1 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
237833823 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
1 ACTTTCAAGAATACTTTATCTCTGACTTGGAA
237833855 CTCAATCTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.39
Consensus pattern (32 bp):
ACTTTCAAGAATACTTTATCTCTGACTTGGAA
Found at i:237839304 original size:27 final size:28
Alignment explanation
Indices: 237839248--237839317 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
237839238 AAATTTGTAC
237839248 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
237839276 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
237839303 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
237839318 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:237839328 original size:27 final size:27
Alignment explanation
Indices: 237839248--237839329 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
237839238 AAATTTGTAC
* *
237839248 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
237839276 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
237839303 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
237839330 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:237841823 original size:29 final size:29
Alignment explanation
Indices: 237841790--237841863 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
237841780 CCTTCGAGCT
237841790 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
237841819 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
237841848 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
237841864 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:237841824 original size:58 final size:58
Alignment explanation
Indices: 237841731--237841863 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
237841721 ATACTCGATT
* * * * *
237841731 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
237841789 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
237841847 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
237841864 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:237849612 original size:28 final size:29
Alignment explanation
Indices: 237849543--237849613 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
237849533 ATACTCGATT
* * *
237849543 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACATAGTGCCATGCCATTCAAGC
* * *
237849572 -CGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACATAGTGCCATGCCATTCAAGC
237849600 TCGCACAC-TAGTGC
1 TCGCACACATAGTGC
237849614 ATATATTTCC
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
28 27 0.79
29 7 0.21
ACGTcount: A:0.23, C:0.35, G:0.21, T:0.21
Consensus pattern (29 bp):
TCGCACACATAGTGCCATGCCATTCAAGC
Found at i:237849652 original size:29 final size:29
Alignment explanation
Indices: 237849601--237849672 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
237849591 CCTTCGAGCT
237849601 CGCACAC-TAGTG-CATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
237849628 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
237849657 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
237849673 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 6 0.15
28 5 0.12
29 30 0.73
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:237860001 original size:93 final size:93
Alignment explanation
Indices: 237859889--237860060 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
237859879 CGCCCATAAG
* *
237859889 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
237859954 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
237859982 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
237860047 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
237860061 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:237860057 original size:46 final size:46
Alignment explanation
Indices: 237859882--237860057 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
237859872 TGTAACCCGC
* * *
237859882 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
237859928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
237859978 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
237860021 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
237860058 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:237867535 original size:93 final size:93
Alignment explanation
Indices: 237867423--237867594 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
237867413 CGCCCATAAG
* *
237867423 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
237867488 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
237867516 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
237867581 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
237867595 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:237867591 original size:46 final size:46
Alignment explanation
Indices: 237867416--237867591 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
237867406 TGTAACCCGC
* * *
237867416 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
237867462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
237867512 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
237867555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
237867592 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:237870615 original size:40 final size:39
Alignment explanation
Indices: 237870571--237870763 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
237870561 GTTCAAAACA
* * ** * *
237870571 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
237870611 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
237870651 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
237870690 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
237870729 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
237870764 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:237870682 original size:39 final size:39
Alignment explanation
Indices: 237870601--237870763 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
237870591 TATGGTAACC
* *
237870601 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
237870641 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
237870680 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
237870719 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
237870758 CGCACA
1 CGCACA
237870764 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:237878540 original size:79 final size:78
Alignment explanation
Indices: 237878455--237878607 Score: 207
Period size: 79 Copynumber: 1.9 Consensus size: 78
237878445 GTTCAAAACA
* **
237878455 CCTTCGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCAC
1 CCTTCGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCCGGATATCAC
237878520 AACTCGCACAATTG
65 AACTCGCACAATTG
* * * * * *
237878534 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA
1 CCTTCGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCACA
*
237878599 ATTCGCACA
66 ACTCGCACA
237878608 TTCATTCACA
Statistics
Matches: 64, Mismatches: 10, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
78 25 0.39
79 39 0.61
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (78 bp):
CCTTCGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCCGGATATCACA
ACTCGCACAATTG
Found at i:237878565 original size:39 final size:39
Alignment explanation
Indices: 237878484--237878607 Score: 194
Period size: 39 Copynumber: 3.2 Consensus size: 39
237878474 TATGGTAACC
* *
237878484 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
237878524 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
237878563 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
237878602 CGCACA
1 CGCACA
237878608 TTCATTCACA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 60 0.78
40 17 0.22
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:237880405 original size:46 final size:46
Alignment explanation
Indices: 237880331--237880456 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 46
237880321 TGGCATTGAT
* *
237880331 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAG
1 ACGATAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAG
* *
237880377 ACG-TAAGCTAGTGTAAGACATGTTTGGGACATACATCAGCTACGAG
1 ACGAT-AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAG
* * *
237880423 ATGATAGTTAGTGTAAGACCATATCTGGGACATG
1 ACGATAGCTAGTGTAAGA-CATGTCTGGGACATG
237880457 GCATTGACTT
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
45 2 0.03
46 52 0.78
47 13 0.19
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
ACGATAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTACGAG
Found at i:237886572 original size:27 final size:26
Alignment explanation
Indices: 237886528--237886579 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
237886518 CTCGCTGCAA
*
237886528 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
237886555 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
237886580 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:237893047 original size:40 final size:40
Alignment explanation
Indices: 237892968--237893144 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 40
237892958 CGGATGATAA
* * * *
237892968 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
237893008 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
237893048 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
237893088 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
237893128 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
237893145 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 102 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:237901057 original size:41 final size:40
Alignment explanation
Indices: 237900937--237901084 Score: 194
Period size: 41 Copynumber: 3.7 Consensus size: 40
237900927 TGATAACGGA
* *
237900937 CTAAGATCCGAA-GCATTCGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
* * * * *
237900976 CTATG-TCCGAAGGCATTTATGCTAG-TGATTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCGGG
237901015 CTAAGACCCGAAGGCATTTGTTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTG-TGCGAGTTGCTATATCCGGG
237901056 CTAAGACCCGAAGGCATTTGTGCGAGTTG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG
237901085 TTTATCCAGC
Statistics
Matches: 94, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
38 8 0.09
39 28 0.30
40 21 0.22
41 35 0.37
42 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
Found at i:237902102 original size:40 final size:41
Alignment explanation
Indices: 237902048--237902130 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
237902038 GAGATATATA
237902048 AGTCGCAATACATG-AGGTCAGAGTAGTCAAACCCTATAAC
1 AGTCGCAATACATGAAGGTCAGAGTAGTCAAACCCTATAAC
*
237902088 AGTCGCAATGCATGAAGGTCAGAGTAGTCAAACCCTATAAC
1 AGTCGCAATACATGAAGGTCAGAGTAGTCAAACCCTATAAC
237902129 AG
1 AG
237902131 GGGAGACTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 13 0.32
41 28 0.68
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (41 bp):
AGTCGCAATACATGAAGGTCAGAGTAGTCAAACCCTATAAC
Found at i:237903804 original size:21 final size:22
Alignment explanation
Indices: 237903778--237903821 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
237903768 CCCCTTGGTC
237903778 CCTGTG-CT-CCCCGGCGCCCTT
1 CCTGTGTCTCCCCCGGC-CCCTT
237903799 CCTGTGTCTGCCCCCGGCCCCTT
1 CCTGTGTCT-CCCCCGGCCCCTT
237903822 TCTGGTGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 5 0.25
24 7 0.35
ACGTcount: A:0.00, C:0.52, G:0.23, T:0.25
Consensus pattern (22 bp):
CCTGTGTCTCCCCCGGCCCCTT
Found at i:237904119 original size:58 final size:56
Alignment explanation
Indices: 237904049--237904166 Score: 175
Period size: 55 Copynumber: 2.1 Consensus size: 56
237904039 GGGCGGGCCC
*
237904049 GGGCCGCTTCCTTCCTTGTTGGGTCCCGGCCCTGCCCCGGTCTCCGCCTCCTCCC-TTT
1 GGGCCGCTTCCTTCCTTCTTGGGT-CC-G-CCTGCCCCGGTCTCCGCCTCCTCCCTTTT
* *
237904107 GGGCCGCTTCCTTCCTTCTTGGGTCCGCCTGTCCCGGTCTCCGCCTTCTCCCTTTT
1 GGGCCGCTTCCTTCCTTCTTGGGTCCGCCTGCCCCGGTCTCCGCCTCCTCCCTTTT
237904163 GGGC
1 GGGC
237904167 TTGGGGCGGG
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
55 23 0.41
56 8 0.14
57 2 0.04
58 23 0.41
ACGTcount: A:0.00, C:0.44, G:0.25, T:0.31
Consensus pattern (56 bp):
GGGCCGCTTCCTTCCTTCTTGGGTCCGCCTGCCCCGGTCTCCGCCTCCTCCCTTTT
Found at i:237904229 original size:24 final size:24
Alignment explanation
Indices: 237904201--237904254 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
237904191 TTGTGTCTGC
* *
237904201 CCGGGCTGGCTCGCCGGCTCCTCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
*
237904225 CCGGGCTGGCTCGTCGGCGCCCCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
237904249 CCGGGC
1 CCGGGC
237904255 CCCTCCCGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.00, C:0.46, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGCTGGCTCGCCGGCGCCCCG
Found at i:237906380 original size:18 final size:19
Alignment explanation
Indices: 237906347--237906386 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
237906337 CCCGGCCGGC
*
237906347 CCGCGGCGCCCCGCTCTCG
1 CCGCGGCGCCCCGCTCGCG
*
237906366 CCGCGGC-CGCCGCTCGCG
1 CCGCGGCGCCCCGCTCGCG
237906384 CCG
1 CCG
237906387 TGCCCCGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.00, C:0.57, G:0.35, T:0.07
Consensus pattern (19 bp):
CCGCGGCGCCCCGCTCGCG
Found at i:237907736 original size:21 final size:21
Alignment explanation
Indices: 237907711--237907770 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
237907701 GTCCGTGTTT
*
237907711 CCCGCCGGGCCGCCTG-GGGCG
1 CCCGCCGGGCCGCC-GCCGGCG
237907732 CCCGCC-GGCCGCCGCCCGGCG
1 CCCGCCGGGCCGCCG-CCGGCG
237907753 CCCGCCGGTGCCGCCGCC
1 CCCGCCGG-GCCGCCGCC
237907771 CGCCGCGCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 7 0.21
21 16 0.47
22 3 0.09
23 7 0.21
ACGTcount: A:0.00, C:0.57, G:0.40, T:0.03
Consensus pattern (21 bp):
CCCGCCGGGCCGCCGCCGGCG
Found at i:237907765 original size:23 final size:21
Alignment explanation
Indices: 237907728--237907772 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 21
237907718 GGCCGCCTGG
237907728 GGCGCCCGCCGGCCGCCGCCC
1 GGCGCCCGCCGGCCGCCGCCC
237907749 GGCGCCCGCCGGTGCCGCCGCCC
1 GGCGCCCGCC-G-GCCGCCGCCC
237907772 G
1 G
237907773 CCGCGCCGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.45
22 1 0.05
23 11 0.50
ACGTcount: A:0.00, C:0.58, G:0.40, T:0.02
Consensus pattern (21 bp):
GGCGCCCGCCGGCCGCCGCCC
Found at i:237911849 original size:23 final size:22
Alignment explanation
Indices: 237911811--237911855 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
237911801 CCGCGCTCCC
237911811 CCCCTTCGTCCCTCTGCTCCCGG
1 CCCCTTCGTCCCTCTGC-CCCGG
**
237911834 CCCCTTCGTCTGTCTGCCCCGG
1 CCCCTTCGTCCCTCTGCCCCGG
237911856 GGCCCCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.00, C:0.53, G:0.20, T:0.27
Consensus pattern (22 bp):
CCCCTTCGTCCCTCTGCCCCGG
Found at i:237911918 original size:42 final size:42
Alignment explanation
Indices: 237911872--237912613 Score: 498
Period size: 42 Copynumber: 17.7 Consensus size: 42
237911862 TTTTCTTTCG
* * *
237911872 CCCGCCCCTCCGCGCCCCCCGGGTGCCCCTGCTGCTCGCGGC-
1 CCCGCCCCTCCCCG-CCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * *
237911914 CCCGCCCCTCCCCGTCCTCGGTTGCCGCTGGTG-TCCGCGGCT
1 CCCGCCCCTCCCCGCCCCCGGGTGCCGCTGGTGCT-CGCGGCT
* *
237911956 CCCGCCCCTCCCCGCCCCC-GGTGCCCCTGCTGCTCGCGGCT
1 CCCGCCCCTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
*
237911997 CCCGCCCCTCCCCGGCCCCC-GGTGCCGCTGGTGCCCGCGGCT
1 CCCGCCCCTCCCC-GCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * *
237912039 CCCGCCCGC-CCCCGGGCCGCGGTTGCCGCTGGTGTTCGCGGCT
1 CCCGCCC-CTCCCC-GCCCCCGGGTGCCGCTGGTGCTCGCGGCT
*
237912082 CCCGCCCCTCCCCGCCCCC--GTGCCGCTGGTGCCCGCGGCT
1 CCCGCCCCTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * * *
237912122 CCCGCCCGC-CCCGGGGCCTCGGTTGCCGCTGGTGCCCGCGGCT
1 CCCGCCC-CTCCC-CGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* *
237912165 CCCGCCCCTCCCCGGGCCTC-GGTGCCGCTGGTGGC-CGCGGCT
1 CCCGCCCCTCCCC-GCCCCCGGGTGCCGCTGGT-GCTCGCGGCT
* * *
237912207 CCCGCCCGC-CCCCGGGCCTC-GGTGCCGCTGGT-CCCGCGGCT
1 CCCGCCC-CTCCCC-GCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * * * *
237912248 CTCGCCCGC-CCCGGGCCTCGGTTGCCGCTGGTGCCCGCGGCT
1 CCCGCCC-CTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * * *
237912290 CCCGCCCGC-CCCGGGCCTCGGTTGCCGCTGGTGCCCGCGGCT
1 CCCGCCC-CTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
*
237912332 CCCGCCCCTCCCCGCCCCC-GGTGCCGCTGGTGCCCGCGGCT
1 CCCGCCCCTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * *
237912373 CCCGCCCGC-CCCGGGCCTC-GGTGCCGCTGGTGCCCGCGGCT
1 CCCGCCC-CTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
* * * * *
237912414 CTCGCCCGC-CCCCGGGCCTCGGTTGCCGCTGGTGGC-CGCCGCT
1 CCCGCCC-CTCCCC-GCCCCCGGGTGCCGCTGGT-GCTCGCGGCT
* * *
237912457 -CC-TCCCTGCCCCGGGGCCTC-GGTGCCGCTGGTGGC-CGCGGCT
1 CCCGCCCCT-CCCC--GCCCCCGGGTGCCGCTGGT-GCTCGCGGCT
* * *
237912499 CCCGCCCGC-CCCGGCGCCTCGGTTGCCGCTGGTGGC-CGCGGCT
1 CCCGCCC-CTCCCCGC-CCCCGGGTGCCGCTGGT-GCTCGCGGCT
* * * * * * *
237912542 CCCGCCCGC-CCCGGGCCTCGGTTTCCGCTGGCG-TCCCCGGCT
1 CCCGCCC-CTCCCCGCCCCCGGGTGCCGCTGGTGCT-CGCGGCT
* *
237912584 CCCGCCCGTCCCCGCCGCCC-TGTGCCGCTG
1 CCCGCCCCTCCCCGCC-CCCGGGTGCCGCTG
237912614 CTCCCGTCCC
Statistics
Matches: 601, Mismatches: 64, Indels: 70
0.82 0.09 0.10
Matches are distributed among these distances:
40 37 0.06
41 157 0.26
42 266 0.44
43 136 0.23
44 4 0.01
45 1 0.00
ACGTcount: A:0.00, C:0.53, G:0.33, T:0.15
Consensus pattern (42 bp):
CCCGCCCCTCCCCGCCCCCGGGTGCCGCTGGTGCTCGCGGCT
Found at i:237912018 original size:125 final size:126
Alignment explanation
Indices: 237911891--237912613 Score: 934
Period size: 125 Copynumber: 5.8 Consensus size: 126
237911881 CCGCGCCCCC
* * * *
237911891 CGGGTGCCCCTGCTGCTCGCGGC-CCCGCCC-CTCCCC-GTCCTCGGTTGCCGCTGGTGTCCGCG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGC-CCCCGGGCCTCGGTTGCCGCTGGTGTCCGCG
* * * *
237911953 GCTCCCGCCCCTCCCCGCCCCCGGTGCCCCTGCTGCTCGCGGCTCCCGCCCCTCCCCGGCCC-
65 GCTCCCGCCCCTCCCCGCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCG-CCCGCCCCGGCCCT
* * *
237912015 CCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCGCGGTTGCCGCTGGTGTTCGCGG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGTCCGCGG
*
237912080 CTCCCGCCCCTCCCCGCCCCC-GTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGGGCCT
66 CTCCCGCCCCTCCCCGCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCC-GGCCCT
* *
237912141 CGGTTGCCGCTGGTGCCCGCGGCTCCCGCCC-CTCCCCGGGCCTCGG-TGCCGCTGGTGGCCGCG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGC-CCCCGGGCCTCGGTTGCCGCTGGTGTCCGCG
* * * *
237912204 GCTCCCGCCCGC-CCCCGGGCCTCGGTGCCGCTGGT-CCCGCGGCTCTCGCCCGCCCCGGGCCT
65 GCTCCCGCCC-CTCCCC-GCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGCCCT
* *
237912266 CGGTTGCCGCTGGTGCCCGCGGCTCCCGCCCG-CCCCGGGCCTCGGTTGCCGCTGGTGCCCGCGG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGTCCGCGG
*
237912330 CTCCCGCCCCTCCCCGCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGGCCT
66 CTCCCGCCCCTCCCCGCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGCCCT
* * *
237912391 C-GGTGCCGCTGGTGCCCGCGGCTCTCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGGCCGCCG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGTCCGCGG
* * * *
237912455 CT-CC-TCCCTGCCCCGGGGCCTCGGTGCCGCTGGTGGCCGCGGCTCCCGCCCGCCCCGGCGCCT
66 CTCCCGCCCCT-CCCC--GCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGC-CCT
* * * * *
237912518 CGGTTGCCGCTGGTGGCCGCGGCTCCCGCCCG-CCCCGGGCCTCGGTTTCCGCTGGCGTCCCCGG
1 CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGTCCGCGG
* *
237912582 CTCCCGCCCGTCCCCGCCGCCCTGTGCCGCTG
66 CTCCCGCCCCTCCCCGCC-CCCGGTGCCGCTG
237912614 CTCCCGTCCC
Statistics
Matches: 531, Mismatches: 46, Indels: 41
0.86 0.07 0.07
Matches are distributed among these distances:
123 4 0.01
124 90 0.17
125 193 0.36
126 153 0.29
127 55 0.10
128 33 0.06
129 3 0.01
ACGTcount: A:0.00, C:0.52, G:0.33, T:0.15
Consensus pattern (126 bp):
CGGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCCGGGCCTCGGTTGCCGCTGGTGTCCGCGG
CTCCCGCCCCTCCCCGCCCCCGGTGCCGCTGGTGCCCGCGGCTCCCGCCCGCCCCGGCCCT
Found at i:237912023 original size:83 final size:84
Alignment explanation
Indices: 237911893--237912597 Score: 848
Period size: 83 Copynumber: 8.4 Consensus size: 84
237911883 GCGCCCCCCG
* * * * *
237911893 GGTGCCCCTGCTGCTCGCGGC-CCCGCCCCTCCCC-GTCCTCGGTTGCCGCTGGTGTCCGCGGCT
1 GGTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGCT
* *
237911956 CCCGCCC-CTCCCCGCCCCC
66 CCCGCCCGC-CCCCGGCCTC
* * * *
237911975 GGTGCCCCTGCTGCTCGCGGCTCCCGCCCCTCCCCGGCCCCCGG-TGCCGCTGGTGCCCGCGGCT
1 GGTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGCT
*
237912039 CCCGCCCGCCCCCGGGCCGC
66 CCCGCCCGCCCCC-GGCCTC
** *
237912059 GGTTGCCGCTGGTGTTCGCGGCTCCCGCCCCTCCCC-GCCC-CCG-TGCCGCTGGTGCCCGCGGC
1 GG-TGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGC
*
237912121 TCCCGCCCGCCCCGGGGCCTC
65 TCCCGCCCGCCCC-CGGCCTC
* *
237912142 GGTTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGGCCTCGG-TGCCGCTGGTGGCCGCGGC
1 GG-TGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGC
237912206 TCCCGCCCGCCCCCGGGCCTC
65 TCCCGCCCGCCCCC-GGCCTC
* * *
237912227 GGTGCCGCTGGT-CCCGCGGCTCTCG-CCCGCCCCGGGCCTCGGTTGCCGCTGGTGCCCGCGGCT
1 GGTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGCT
*
237912290 CCCGCCCGCCCCGGGCCTC
66 CCCGCCCGCCCCCGGCCTC
*
237912309 GGTTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCC-GCCCCCGG-TGCCGCTGGTGCCCGCGGC
1 GG-TGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGC
*
237912372 TCCCGCCCGCCCCGGGCCTC
65 TCCCGCCCGCCCCCGGCCTC
* * * *
237912392 GGTGCCGCTGGTGCCCGCGGCTCTCGCCCGC-CCCCGGGCCTCGGTTGCCGCTGGTGGCCGCCGC
1 GGTGCCGCTGGTGCCCGCGGCTCCCGCCC-CTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGC
* *
237912456 TCCTC-CCTGCCCCGGGGCCTC
65 TCC-CGCCCGCCCC-CGGCCTC
* * *
237912477 GGTGCCGCTGGTGGCCGCGGCTCCCG-CCCGCCCCGGCGCCTCGGTTGCCGCTGGTGGCCGCGGC
1 GGTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGC-CCTCGGTTGCCGCTGGTGCCCGCGGC
*
237912541 TCCCGCCCGCCCCGGGCCTC
65 TCCCGCCCGCCCCCGGCCTC
* * *
237912561 GGTTTCCGCTGGCGTCCC-CGGCTCCCGCCCGTCCCCG
1 GG-TGCCGCTGGTG-CCCGCGGCTCCCGCCCCTCCCCG
237912598 CCGCCCTGTG
Statistics
Matches: 558, Mismatches: 41, Indels: 44
0.87 0.06 0.07
Matches are distributed among these distances:
82 75 0.13
83 218 0.39
84 93 0.17
85 163 0.29
86 9 0.02
ACGTcount: A:0.00, C:0.52, G:0.33, T:0.15
Consensus pattern (84 bp):
GGTGCCGCTGGTGCCCGCGGCTCCCGCCCCTCCCCGGCCCTCGGTTGCCGCTGGTGCCCGCGGCT
CCCGCCCGCCCCCGGCCTC
Found at i:237912806 original size:11 final size:11
Alignment explanation
Indices: 237912790--237912868 Score: 63
Period size: 11 Copynumber: 6.8 Consensus size: 11
237912780 CGGGCTGGCT
237912790 CGCCGGCGCCC
1 CGCCGGCGCCC
* *
237912801 CGCCGGGCTGGCT
1 CGCC-GGC-GCCC
237912814 CGCCGGCGCCC
1 CGCCGGCGCCC
237912825 CGCCGG-GCTCGC
1 CGCCGGCGC-C-C
237912837 TCGCCGGCGCCC
1 -CGCCGGCGCCC
237912849 CGCCGG-GCCC
1 CGCCGGCGCCC
*
237912859 TCCCCGGCGC
1 -CGCCGGCGC
237912869 TGGGGGGCCC
Statistics
Matches: 55, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
10 6 0.11
11 24 0.44
12 10 0.18
13 13 0.24
14 2 0.04
ACGTcount: A:0.00, C:0.56, G:0.38, T:0.06
Consensus pattern (11 bp):
CGCCGGCGCCC
Found at i:237912811 original size:24 final size:24
Alignment explanation
Indices: 237912779--237912856 Score: 147
Period size: 24 Copynumber: 3.2 Consensus size: 24
237912769 TTTCGCTCTT
237912779 CCGGGCTGGCTCGCCGGCGCCCCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
237912803 CCGGGCTGGCTCGCCGGCGCCCCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
*
237912827 CCGGGCTCGCTCGCCGGCGCCCCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
237912851 CCGGGC
1 CCGGGC
237912857 CCTCCCCGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 53 1.00
ACGTcount: A:0.00, C:0.51, G:0.41, T:0.08
Consensus pattern (24 bp):
CCGGGCTGGCTCGCCGGCGCCCCG
Found at i:237912994 original size:21 final size:22
Alignment explanation
Indices: 237912968--237913011 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
237912958 CCCCTTGGTC
237912968 CCTGTG-CT-CCCCGGCGCCCTT
1 CCTGTGTCTCCCCCGG-GCCCTT
237912989 CCTGTGTCTGCCCCCGGGCCCTT
1 CCTGTGTCT-CCCCCGGGCCCTT
237913012 TCTGGTGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
22 2 0.10
23 6 0.30
24 6 0.30
ACGTcount: A:0.00, C:0.50, G:0.25, T:0.25
Consensus pattern (22 bp):
CCTGTGTCTCCCCCGGGCCCTT
Found at i:237913306 original size:58 final size:59
Alignment explanation
Indices: 237913236--237913356 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
237913226 GGGCGGGCCC
* *
237913236 GGGCCGCTTCCTTCCTTGTTGGGTCCCGGCCCTGCCCCGGTCTCCGCCTCCTCCC-TTT
1 GGGCCGCTTCCTTCCTTCTTGGGTCCCGCCCCTGCCCCGGTCTCCGCCTCCTCCCTTTT
* *
237913294 GGGCCGCTTCCTTCCTTCTTGGGTCCCGCCCCTGTCCCGGTCTCCGCCTTCTCCCTTTT
1 GGGCCGCTTCCTTCCTTCTTGGGTCCCGCCCCTGCCCCGGTCTCCGCCTCCTCCCTTTT
237913353 GGGC
1 GGGC
237913357 TTGGGGCGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.00, C:0.45, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGCCGCTTCCTTCCTTCTTGGGTCCCGCCCCTGCCCCGGTCTCCGCCTCCTCCCTTTT
Found at i:237913418 original size:24 final size:24
Alignment explanation
Indices: 237913390--237913443 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
237913380 TTTGTGTCTC
* *
237913390 CCGGGCTGGCTCGCCGGCTCCTCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
*
237913414 CCGGGCTGGCTCGTCGGCGCCCCG
1 CCGGGCTGGCTCGCCGGCGCCCCG
237913438 CCGGGC
1 CCGGGC
237913444 CCCTCCCGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.00, C:0.46, G:0.41, T:0.13
Consensus pattern (24 bp):
CCGGGCTGGCTCGCCGGCGCCCCG
Found at i:237914085 original size:175 final size:172
Alignment explanation
Indices: 237913794--237914137 Score: 475
Period size: 175 Copynumber: 2.0 Consensus size: 172
237913784 TTTTCCTTGC
* * *
237913794 CCCTTTTTTCTGTTGGCCCCCCGCCCTCCCCGCCGCCGCCTGCCCTCTGGCCTGCTGGCCCGGTC
1 CCCTTTTTTCTGTTGGCCCCCCGCCCTCCCCGCCGCCGCCTGCCCTCTGGCCGGCGGGCCCGGCC
* *
237913859 GCTCCTTGCCCCGTGCTCGGGCCGCCCCCGTTGGGGCTCGCCCTCGCCCCCCCCGGCCCCCGCTG
66 GCTCCTTGCCCCGTGCTCCGGCCGCCCCCCTTGGGGCTCGCCCTCG-CCCCCCCGG-CCCCGCTG
* *
237913924 TGCGCTGTTTCCCGCGGGGGCGGCCCGGCCCCGTGTTTCCCTTCG
129 TGCCCTGTTTCCCG-GGCGGCGGCCCGGCCCCGTGTTTCCCTTCG
* *
237913969 CCCTTTTTTCTGTTGGCCCCCC-CCCTCCCCGCCGTCTGGCCTG-GC-CTGGCCCGGCCGGGCCC
1 CCCTTTTTTCTGTTGGCCCCCCGCCCTCCCCGCCG-C-CGCCTGCCCTCTGG-CCGG-CGGGCCC
237914031 GGCCGC-CCTTGCCCCCGTGC-CCGGCCGCCCCCCTTGGGCGCTCGCCC-CGCCCCCCCGGCCCC
62 GGCCGCTCCTTG-CCCCGTGCTCCGGCCGCCCCCCTTGGG-GCTCGCCCTCGCCCCCCCGGCCCC
*
237914093 GTTGTGCCCTGTTTCCCGGGCGGCGGCCCGGCCCCGTGTTTCCCT
125 GCTGTGCCCTGTTTCCCGGGCGGCGGCCCGGCCCCGTGTTTCCCT
237914138 CCCTCCTTCC
Statistics
Matches: 153, Mismatches: 10, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
172 26 0.17
173 20 0.13
174 25 0.16
175 50 0.33
176 32 0.21
ACGTcount: A:0.00, C:0.51, G:0.28, T:0.20
Consensus pattern (172 bp):
CCCTTTTTTCTGTTGGCCCCCCGCCCTCCCCGCCGCCGCCTGCCCTCTGGCCGGCGGGCCCGGCC
GCTCCTTGCCCCGTGCTCCGGCCGCCCCCCTTGGGGCTCGCCCTCGCCCCCCCGGCCCCGCTGTG
CCCTGTTTCCCGGGCGGCGGCCCGGCCCCGTGTTTCCCTTCG
Found at i:237915592 original size:18 final size:19
Alignment explanation
Indices: 237915559--237915598 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
237915549 CCCGGCCGGC
*
237915559 CCGCGGCGCCCCGCTCTCG
1 CCGCGGCGCCCCGCTCGCG
*
237915578 CCGCGGC-CGCCGCTCGCG
1 CCGCGGCGCCCCGCTCGCG
237915596 CCG
1 CCG
237915599 TGCCCCGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.00, C:0.57, G:0.35, T:0.07
Consensus pattern (19 bp):
CCGCGGCGCCCCGCTCGCG
Found at i:237916950 original size:21 final size:21
Alignment explanation
Indices: 237916925--237916984 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
237916915 GTCCGTGTTT
*
237916925 CCCGCCGGGCCGCCTG-GGGCG
1 CCCGCCGGGCCGCC-GCCGGCG
237916946 CCCGCC-GGCCGCCGCCCGGCG
1 CCCGCCGGGCCGCCG-CCGGCG
237916967 CCCGCCGGTGCCGCCGCC
1 CCCGCCGG-GCCGCCGCC
237916985 CGCCGCGCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 7 0.21
21 16 0.47
22 3 0.09
23 7 0.21
ACGTcount: A:0.00, C:0.57, G:0.40, T:0.03
Consensus pattern (21 bp):
CCCGCCGGGCCGCCGCCGGCG
Found at i:237916979 original size:23 final size:21
Alignment explanation
Indices: 237916942--237916986 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 21
237916932 GGCCGCCTGG
237916942 GGCGCCCGCCGGCCGCCGCCC
1 GGCGCCCGCCGGCCGCCGCCC
237916963 GGCGCCCGCCGGTGCCGCCGCCC
1 GGCGCCCGCC-G-GCCGCCGCCC
237916986 G
1 G
237916987 CCGCGCCGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.45
22 1 0.05
23 11 0.50
ACGTcount: A:0.00, C:0.58, G:0.40, T:0.02
Consensus pattern (21 bp):
GGCGCCCGCCGGCCGCCGCCC
Found at i:237918725 original size:24 final size:22
Alignment explanation
Indices: 237918698--237918741 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
237918688 CCGGCCTTCC
237918698 CCCGCCCCTCGCTCCCCCCCTCCG
1 CCCGCCCCT-GC-CCCCCCCTCCG
*
237918722 CCCGGCCCTGCCCCCCCCTC
1 CCCGCCCCTGCCCCCCCCTC
237918742 GCCTCCCGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 2 0.11
24 8 0.42
ACGTcount: A:0.00, C:0.75, G:0.14, T:0.11
Consensus pattern (22 bp):
CCCGCCCCTGCCCCCCCCTCCG
Found at i:237921267 original size:46 final size:47
Alignment explanation
Indices: 237921151--237921362 Score: 360
Period size: 46 Copynumber: 4.5 Consensus size: 47
237921141 NNNNNNNNNN
237921151 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATAT--ACACTTTCACATTCATCACATCG
237921200 GCCATTAGGCCTTATCACATATATATCAC-TTCACATTCATCACATC-
1 GCCATTAGGCCTTATCACATATATA-CACTTTCACATTCATCACATCG
237921246 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
237921293 GCCATTAGGCCTTATCACAT-TATACACCTTT-ACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATACA-CTTTCACATTCATCACATCG
237921339 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
237921363 TATCTCATAC
Statistics
Matches: 158, Mismatches: 0, Indels: 12
0.93 0.00 0.07
Matches are distributed among these distances:
45 3 0.02
46 83 0.53
47 45 0.28
48 3 0.02
49 24 0.15
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:237921312 original size:93 final size:94
Alignment explanation
Indices: 237921151--237921362 Score: 367
Period size: 93 Copynumber: 2.3 Consensus size: 94
237921141 NNNNNNNNNN
237921151 GCCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATA-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
237921216 ACATATATATCA-CTTCACATTCATCACATC-
65 ACAT-TATA-CACCTTCACATTCATCACATCG
237921246 GCCATTAGGCCTTATCACATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 GCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
237921310 CATTATACACCTTTACATTCATCACATCG
66 CATTATACACCTTCACATTCATCACATCG
237921339 GCCATTAGGCCTTATCACATATAT
1 GCCATTAGGCCTTATCACATATAT
237921363 TATCTCATAC
Statistics
Matches: 114, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
91 2 0.02
92 21 0.18
93 67 0.59
95 24 0.21
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (94 bp):
GCCATTAGGCCTTATCACATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATTATACACCTTCACATTCATCACATCG
Found at i:237925491 original size:40 final size:40
Alignment explanation
Indices: 237925442--237925713 Score: 436
Period size: 40 Copynumber: 6.8 Consensus size: 40
237925432 CCAGCATGAT
* * *
237925442 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * * *
237925482 TGCTCTTCGGGACTTAGTTCGGTTGCATTACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
237925522 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
237925562 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
237925602 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
237925642 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* * * *
237925682 TGCTCTTCGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
237925714 CTCAATTCTC
Statistics
Matches: 217, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:237929016 original size:28 final size:28
Alignment explanation
Indices: 237928947--237929047 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
237928937 GACAAGATTG
* * * *
237928947 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
237928977 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
237929005 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
237929034 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
237929048 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:237929041 original size:29 final size:28
Alignment explanation
Indices: 237928976--237929047 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
237928966 AAAATTGTAC
*
237928976 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
237929004 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
237929033 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237929048 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:237936816 original size:28 final size:28
Alignment explanation
Indices: 237936747--237936847 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
237936737 GACAAGATTG
* * * *
237936747 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
237936777 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
237936805 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
237936834 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
237936848 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:237936841 original size:29 final size:28
Alignment explanation
Indices: 237936776--237936847 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
237936766 AAAATTGTAC
*
237936776 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
237936804 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
237936833 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
237936848 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:237940778 original size:47 final size:47
Alignment explanation
Indices: 237940720--237940879 Score: 186
Period size: 47 Copynumber: 3.4 Consensus size: 47
237940710 AGTGAACTTG
* *
237940720 GACTCAACTCAATGAGTTCGGATGCCTAGTTACATCTCAGGAACTCG
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
* * *
237940767 GACTCAACTCAACGAGTTTGGA---C--GTTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCAG-GAACTCA
* *
237940813 GACTCAAGTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCA
1 GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
237940860 GACTCAACTCAACGAGTTCG
1 GACTCAACTCAACGAGTTCG
237940880 AACGTTCGCA
Statistics
Matches: 93, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 3 0.03
46 26 0.28
47 46 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (47 bp):
GACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAGGAACTCA
Found at i:237940795 original size:93 final size:93
Alignment explanation
Indices: 237940669--237940930 Score: 398
Period size: 93 Copynumber: 2.8 Consensus size: 93
237940659 CCATAAGCGT
** * * *
237940669 ACTCGGACTCAACTCAATAAGTTCGGGCATTCGCATCCATAAGTGAACTTGGACTCAACTCAATG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
*
237940734 AGTTCGGATGCCTAGTTACATCTCAGGA
66 AGTTCGGATGCCTAGTTACATCTCACGA
* * * *
237940762 ACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCAGACTCAAGTCAACG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
237940827 AGTTCGGATGCCTAGTTACATCTCACGA
66 AGTTCGGATGCCTAGTTACATCTCACGA
* *
237940855 ACTCAGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
1 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
* *
237940920 GGTTCAGATGC
66 AGTTCGGATGC
237940931 TCAAATATCT
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 151 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (93 bp):
ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAATG
AGTTCGGATGCCTAGTTACATCTCACGA
Found at i:237940825 original size:46 final size:46
Alignment explanation
Indices: 237940659--237940917 Score: 192
Period size: 46 Copynumber: 5.6 Consensus size: 46
237940649 TGTAACCCAC
* * * ** * *
237940659 CCATAAGCGTACTCGGACTCAACTCAATAAGTTCGGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
** * *
237940705 CCATAAGTGAACTTGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
237940755 -C-TCAG-GAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
237940798 CCATAAGTGAACTCAGACTCAAGTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
237940848 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
237940891 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCAGACTCAACTCAA
237940918 TGGGTTCAGA
Statistics
Matches: 170, Mismatches: 25, Indels: 36
0.74 0.11 0.16
Matches are distributed among these distances:
42 6 0.04
43 6 0.04
44 4 0.02
45 5 0.03
46 76 0.45
47 53 0.31
48 5 0.03
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:237945121 original size:23 final size:24
Alignment explanation
Indices: 237945075--237945122 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
237945065 ATGGTTCATC
237945075 AGGAAAAAATAAGTTACGATTCAA
1 AGGAAAAAATAAGTTACGATTCAA
237945099 AGGAAAAAATAAGTTACGA-TCAA
1 AGGAAAAAATAAGTTACGATTCAA
237945122 A
1 A
237945123 TGTGTAATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.56, C:0.08, G:0.17, T:0.19
Consensus pattern (24 bp):
AGGAAAAAATAAGTTACGATTCAA
Found at i:237947072 original size:40 final size:40
Alignment explanation
Indices: 237946987--237947137 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
237946977 AATTGAATGA
* * *
237946987 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
237947027 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
237947068 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
237947107 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
237947138 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:237947151 original size:40 final size:40
Alignment explanation
Indices: 237947024--237947153 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
237947014 ATGCTGGAAA
* * * *
237947024 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
237947064 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
237947104 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
237947144 TTATATCCGG
1 TTATATCCGG
237947154 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:237954963 original size:40 final size:40
Alignment explanation
Indices: 237954897--237955000 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
237954887 AAATTGAATG
* * *
237954897 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
237954936 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
*
237954976 ACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
237955001 TTCGTGCGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 13 0.24
40 41 0.76
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:237957716 original size:22 final size:22
Alignment explanation
Indices: 237957674--237957717 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
237957664 AATTATTTAC
* *
237957674 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
237957696 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
237957718 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:237958018 original size:40 final size:40
Alignment explanation
Indices: 237957944--237958125 Score: 260
Period size: 40 Copynumber: 4.6 Consensus size: 40
237957934 AACGCAAGTA
* * *
237957944 CCTTCGGGATTTAG-CCGGATATAGT-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
* *
237957983 TCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* *
237958023 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
237958063 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
*
237958103 CCTTCGGCACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
237958126 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.08
40 117 0.90
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:237958076 original size:80 final size:80
Alignment explanation
Indices: 237957944--237958125 Score: 294
Period size: 80 Copynumber: 2.3 Consensus size: 80
237957934 AACGCAAGTA
* * * *
237957944 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATGTCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
237958008 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
*
237958023 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
237958088 TCACTAGCACAAAAG
66 TCAATAGCACAAAAG
*
237958103 CCTTCGGCACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
237958126 CATTCGAATA
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 13 0.14
80 82 0.86
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCAATAGCACAAAAG
Found at i:237966289 original size:22 final size:22
Alignment explanation
Indices: 237966247--237966290 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
237966237 AATTATTTAC
* *
237966247 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
237966269 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
237966291 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:237966589 original size:40 final size:40
Alignment explanation
Indices: 237966515--237966736 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
237966505 AACCCAAGTA
* *
237966515 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
237966554 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
237966594 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
237966634 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
237966674 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
237966714 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
237966737 CATTCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 156 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:237969712 original size:20 final size:18
Alignment explanation
Indices: 237969687--237969723 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
237969677 ATTACTAAGT
237969687 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
237969707 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
237969724 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:237970330 original size:46 final size:46
Alignment explanation
Indices: 237970278--237970453 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
237970268 TGGTTGAGCA
237970278 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
237970324 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
237970369 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
237970417 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
237970454 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:237970434 original size:93 final size:93
Alignment explanation
Indices: 237970275--237970445 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
237970265 GGATGGTTGA
* **
237970275 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
237970340 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
237970368 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
237970433 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
237970446 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:237979019 original size:47 final size:44
Alignment explanation
Indices: 237978951--237979307 Score: 245
Period size: 47 Copynumber: 7.6 Consensus size: 44
237978941 TTTGTGCTCT
* * * *
237978951 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATTAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACA-GATGAGAGCC
* * * *
237978997 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCA--CAGATGAGAGCC
* * * *
237979045 AGTGTAAAACATGTCTGGGACATGCATCAGCCATACTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACA-GATGAGAGCC
*
237979091 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCAC--AGATGAGAGCC
* *
237979139 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGA-GATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG---C-ACAGATGAGAGCC
* * * *
237979186 AGTGTAAGACGA-GTCTGGGAAATGCATCAGCTA-AGA-GTTGTGCT
1 AGTGTAAGAC-ATGTCTGGGACATGCATCAGC-ACAGATG-AGAGCC
* * * * *
237979230 AGTATAAGACTTGTTTGGGACATGCATCAGCACGCGTATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCA--C--AGATGAGAGCC
237979278 AGTGTAAGACCATGTCTGGGACATGACATC
1 AGTGTAAGA-CATGTCTGGGACATG-CATC
237979308 GGCAATATAT
Statistics
Matches: 249, Mismatches: 37, Indels: 46
0.75 0.11 0.14
Matches are distributed among these distances:
43 5 0.02
44 31 0.12
45 1 0.00
46 35 0.14
47 93 0.37
48 60 0.24
49 18 0.07
50 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACAGATGAGAGCC
Found at i:237979110 original size:94 final size:93
Alignment explanation
Indices: 237978949--237979307 Score: 367
Period size: 94 Copynumber: 3.8 Consensus size: 93
237978939 GATTTGTGCT
* * * * *
237978949 CTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATTAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
* * *
237979014 GGGACATGGCATCGGCATCCAGACGAGGG
66 GGGACATGGCATCAGCATCAAGA-GAGTG
* *
237979043 CTAGTGTAAAACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
237979108 GGGACATGGCATCAGCA-CAGAGATGAGTG
66 GGGACATGGCATCAGCATCA-AGA-GAGTG
* * *
237979137 CCAGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCTAGTGTAAGACGA-
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCAT
* *
237979198 GTCTGGGAAAT-GCATCAGC-T-AAGAGTTGTG
62 GTCTGGGACATGGCATCAGCATCAAGAG-AGTG
* * * * *
237979228 CTAGTATAAGACTTGTTTGGGACATGCATCAGCACGCGTA-TATGAGAGCTAGTGTAAGACCATG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATG
*
237979292 TCTGGGACATGACATC
63 TCTGGGACATGGCATC
237979308 GGCAATATAT
Statistics
Matches: 225, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
90 1 0.00
91 34 0.15
92 16 0.07
93 25 0.11
94 132 0.59
95 17 0.08
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (93 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCATCAAGAGAGTG
Found at i:237979214 original size:141 final size:137
Alignment explanation
Indices: 237978942--237979307 Score: 373
Period size: 141 Copynumber: 2.6 Consensus size: 137
237978932 ATTGGGTGAT
* * * *
237978942 TTGTGCTCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCACA-TTATTAGAGCCAGTGTAAGA
1 TTGTGC-C-AGTGTAAGACATGTCTGGGACATGCATCAG-CACAGATATGAGAGCCAGTGTAAGA
* * *
237979006 CCATGTCTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAAACATGTCTGGGACATGCA
63 CCATGTCTGGGACAT-GCATCAGCATCCAGACGAGAGCTAGTGTAAAACATGTCTGGGAAATGCA
* *
237979071 TCAGC-CATAC
127 TCAGCTAAGAC
* *
237979081 TATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACAGAGATGAGTGCCAGTGTAA
1 T-TG-T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACAGATATGAGAGCCAGTGTAA
* * *
237979146 GA-CATGTCTGGGACATGCATCAGCCTCGACAGA-GATAGCTAGTGTAAGACGA-GTCTGGGAAA
61 GACCATGTCTGGGACATGCATCAGCATC--CAGACGAGAGCTAGTGTAAAAC-ATGTCTGGGAAA
*
237979208 TGCATCAGCTAAGAG
123 TGCATCAGCTAAGAC
* * * * * *
237979223 TTGTGCTAGTATAAGACTTGTTTGGGACATGCATCAGCACGCGTATATGAGAGCTAGTGTAAGAC
1 TTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCAC-AG-ATATGAGAGCCAGTGTAAGAC
237979288 CATGTCTGGGACATGACATC
64 CATGTCTGGGACATG-CATC
237979308 GGCAATATAT
Statistics
Matches: 190, Mismatches: 23, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
137 10 0.05
138 13 0.07
139 28 0.15
140 36 0.19
141 72 0.38
142 31 0.16
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (137 bp):
TTGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACAGATATGAGAGCCAGTGTAAGACCA
TGTCTGGGACATGCATCAGCATCCAGACGAGAGCTAGTGTAAAACATGTCTGGGAAATGCATCAG
CTAAGAC
Found at i:237982595 original size:29 final size:27
Alignment explanation
Indices: 237982561--237982663 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
237982551 TACTCAATCA
*
237982561 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
237982590 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
237982619 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
237982648 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
237982664 ATCTCATCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:237989817 original size:27 final size:28
Alignment explanation
Indices: 237989722--237989829 Score: 101
Period size: 29 Copynumber: 3.8 Consensus size: 28
237989712 TGCTTAATAC
* **
237989722 TCAATCACGCACACTTAGTGCCATGTGAT
1 TCAAGCACGCACACTTAGTGCCAT-ACAT
* * *
237989751 TCAAGCCCGCACACATAGTGCCATATAGT
1 TCAAGCACGCACACTTAGTGCCATACA-T
* * *
237989780 CCAAACTCGCACACTTAGTGCCATACAT
1 TCAAGCACGCACACTTAGTGCCATACAT
*
237989808 TCAA-CACGCACACTCAGTGCCA
1 TCAAGCACGCACACTTAGTGCCA
237989830 ATCTCATCCT
Statistics
Matches: 65, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 16 0.25
28 5 0.08
29 44 0.68
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (28 bp):
TCAAGCACGCACACTTAGTGCCATACAT
Found at i:237991057 original size:43 final size:44
Alignment explanation
Indices: 237990975--237991075 Score: 170
Period size: 43 Copynumber: 2.3 Consensus size: 44
237990965 AATCAGCTCT
* *
237990975 ACTGCAACTTCAAGAAGACCAGACTTGCAGCTTTGACCTGCTTC
1 ACTGCAACTTCAGGGAGACCAGACTTGCAGCTTTGACCTGCTTC
237991019 ACTGCAACTTCAGGGAGACCA-ACTTGCAGCTTTGACCTGCTTC
1 ACTGCAACTTCAGGGAGACCAGACTTGCAGCTTTGACCTGCTTC
237991062 ACTGC-ACTTCAGGG
1 ACTGCAACTTCAGGG
237991076 TATCAAATCT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
42 9 0.16
43 27 0.49
44 19 0.35
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGACCAGACTTGCAGCTTTGACCTGCTTC
Found at i:237991353 original size:55 final size:54
Alignment explanation
Indices: 237991267--237991468 Score: 275
Period size: 57 Copynumber: 3.7 Consensus size: 54
237991257 GTGTGGCTTG
*
237991267 AGGCTCGACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACA-AAATTTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-GAAAAACAGAAA-TTGAA
* * *
237991322 AGGCTCAACTCACCTCTCGCAATATGGGTTGATTTATTTGAAAAAATATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT-TTTG-AAAAACAGAAATTGAA
*
237991379 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGGAATT-AA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
*
237991432 ATGGTTCAAC-CACCTCTCGCAATATGAGTTGATTTTT
1 A-GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
237991469 TTGAAAAGTA
Statistics
Matches: 134, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
53 30 0.22
54 17 0.13
55 34 0.25
56 5 0.04
57 45 0.34
58 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:237991473 original size:55 final size:55
Alignment explanation
Indices: 237991267--237991475 Score: 282
Period size: 55 Copynumber: 3.8 Consensus size: 55
237991257 GTGTGGCTTG
* *
237991267 AGGCTCGACTCACCTCTCGCAATATGAGTTGATTTTTGGAAAAACA-AAATTTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAA-TTGAA
* * *
237991322 AGGCTCAACTCACCTCTCGCAATATGGGTTGATTTATTTGAAAAAATATAAATTGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTG-AAAAACAGAAATTGAA
*
237991379 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGGAATT-AA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
*
237991432 ATGGTTCAAC-CACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
1 A-GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAA
237991476 GTAGGAATTA
Statistics
Matches: 139, Mismatches: 9, Indels: 12
0.87 0.06 0.08
Matches are distributed among these distances:
53 25 0.18
54 17 0.12
55 47 0.34
56 5 0.04
57 42 0.30
58 3 0.02
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (55 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
Found at i:237991701 original size:68 final size:69
Alignment explanation
Indices: 237991591--237991835 Score: 230
Period size: 68 Copynumber: 3.5 Consensus size: 69
237991581 GAAATTAAAA
* * * ** *
237991591 AGGCTTAACTCACCTTTCGCAAGATGAGTCAATTTCT-AAACATAAACTAAAAATA-CTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TGAAACATAAATTAAAAATACCTCAGCGT
*
237991654 GCCCG
65 GCCTG
* * *
237991659 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGGAACATAAATTAAAATTACCTCAACGT-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTAAAAATACCTCAGCGTG
*
237991723 CTTG
66 CCTG
** *
237991727 AGGCTCAACTCATTTC-CGCAATATGAGCTGATTTTTGAAACA-ACGGGAATTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAACATA----AATTAAAAATACCTCA
237991790 GCGTGACCTG
61 GCGTG-CCTG
** * *
237991800 AGGCTTGACTCACCTCTCGTAATATGAGTTGGTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
237991836 AGGAAAGTAA
Statistics
Matches: 142, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
67 16 0.11
68 70 0.49
69 7 0.05
71 18 0.13
73 19 0.13
74 12 0.08
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAACATAAATTAAAAATACCTCAGCGTG
CCTG
Found at i:237992180 original size:73 final size:71
Alignment explanation
Indices: 237992061--237992262 Score: 246
Period size: 73 Copynumber: 2.8 Consensus size: 71
237992051 GTAGAAACTG
* * * *
237992061 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAACAA
1 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAC-A
237992126 CAGGAATT-
65 CA--AATTA
** ** * *
237992134 AAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAATTTTGAAACAT
1 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAC
237992199 AAATTA
66 AAATTA
*
237992205 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGC-ATATGAGCTGATTTT
1 AAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
237992263 CTTGGAAAAT
Statistics
Matches: 110, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
70 4 0.04
71 13 0.12
72 13 0.12
73 80 0.73
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (71 bp):
AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACAC
AAATTA
Found at i:237992404 original size:71 final size:70
Alignment explanation
Indices: 237992289--237992421 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 70
237992279 TAAAAAGAAG
* * *
237992289 AAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AAATTGAAAATACCTCAACGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
237992354 AATAT
66 AATAT
* *
237992359 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
237992422 CTTGGAAAAC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
70 20 0.35
71 37 0.65
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (70 bp):
AAATTGAAAATACCTCAACGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AATAT
Found at i:237992450 original size:159 final size:160
Alignment explanation
Indices: 237992130--237992509 Score: 586
Period size: 160 Copynumber: 2.4 Consensus size: 160
237992120 AAACAACAGG
** * ** *
237992130 AATT-AAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAAATTTTGA
1 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
*
237992194 AACATAAATTAAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCATATGAGCTGA
66 AACATAAATTAAAAATACCTCAACGTGT-ACCTGAGGCTCAACTCACCTCTCGCATATGAGCTGA
*
237992259 TTTTCTTGGAAAATATGAATTAAAAAGAAGA
130 TTTTCTTGGAAAACATGAATTAAAAAGAAGA
237992290 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * * *
237992354 AATATAAATTGAAATTACCTCAACGTGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
66 AACATAAATTAAAAATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGC-ATATGAGCTGA
*
237992418 TTTTCTTGGAAAACATGAATTAAAAAGCAGA
130 TTTTCTTGGAAAACATGAATTAAAAAGAAGA
* *
237992449 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGGGTTGATTT
1 AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTT
237992510 ATTTGAAAAA
Statistics
Matches: 203, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
158 23 0.11
159 61 0.30
160 103 0.51
161 16 0.08
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTAAAAATACCTCAACGTGTACCTGAGGCTCAACTCACCTCTCGCATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGAAGA
Found at i:238005096 original size:14 final size:14
Alignment explanation
Indices: 238005024--238005099 Score: 59
Period size: 14 Copynumber: 5.3 Consensus size: 14
238005014 AAGCAATAGG
238005024 TAATAATAAATATAA
1 TAATAAT-AATATAA
238005039 TAATAGA-AATATAA
1 TAATA-ATAATATAA
* *
238005053 TATTAA-AGATAATAC
1 TAATAATA-AT-ATAA
238005068 TAAGT-ATAATATAA
1 TAA-TAATAATATAA
*
238005082 TAATAATAATGTAA
1 TAATAATAATATAA
238005096 TAAT
1 TAAT
238005100 GATAGTAATG
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.06
14 31 0.62
15 13 0.26
16 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.34
Consensus pattern (14 bp):
TAATAATAATATAA
Found at i:238005998 original size:20 final size:19
Alignment explanation
Indices: 238005961--238005999 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
238005951 TTTTGTGTTA
* *
238005961 TTTATTTATTTATTTATAT
1 TTTATTTATTAATATATAT
238005980 TTTATGTTATTAATATATAT
1 TTTAT-TTATTAATATATAT
238006000 ATCTAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTATTTATTAATATATAT
Found at i:238009937 original size:30 final size:30
Alignment explanation
Indices: 238009901--238010031 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
238009891 GACAAGATTG
* * * * *
238009901 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
238009931 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
238009959 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
238009989 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
238010018 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
238010032 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:238009992 original size:58 final size:58
Alignment explanation
Indices: 238009901--238010031 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
238009891 GACAAGATTG
* * * * * *
238009901 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
238009959 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
238010018 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
238010032 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:238017892 original size:30 final size:30
Alignment explanation
Indices: 238017856--238017986 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
238017846 GACAAGATTG
* * * * *
238017856 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
238017886 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
238017914 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
238017944 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
238017973 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
238017987 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:238017947 original size:58 final size:58
Alignment explanation
Indices: 238017856--238017986 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
238017846 GACAAGATTG
* * * * * *
238017856 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
238017914 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
238017973 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
238017987 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:238019736 original size:80 final size:80
Alignment explanation
Indices: 238019652--238019800 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
238019642 TATGGTAACC
* * * *
238019652 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
238019716 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
238019732 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
238019797 CCGG
66 CCGG
238019801 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:238019742 original size:40 final size:38
Alignment explanation
Indices: 238019693--238019800 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
238019683 ATCACGATTT
*
238019693 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
238019733 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
238019773 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
238019801 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:238023442 original size:169 final size:170
Alignment explanation
Indices: 238023160--238023498 Score: 619
Period size: 168 Copynumber: 2.0 Consensus size: 170
238023150 CTCATACAAC
*
238023160 ATTCTCATATACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
1 ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
*
238023225 TATTCTTTCTTCACTATAAAATTCCCTGTAATTAATCCTTAGATACCTCC-ATAGGTGGACACTT
66 TATTCCTTCTTCACTATAAAATTCCCTGTAATTAATCCTTAGATACCTCCAATAGGTGGACACTT
*
238023289 TAATGCTAGTATGTTCCAATACTCTAACTCGCCAGCAAGT
131 TAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
238023329 ATTCTCATACACCTTGTAGGCTCTATGTA-CCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
1 ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
*
238023393 TATTCCTTCTTCACTATAAAATTCCCTGTAATTAAATCCTTAGATACCTCCAATAGGTGGATACT
66 TATTCCTTCTTCACTATAAAATTCCCTGTAATT-AATCCTTAGATACCTCCAATAGGTGGACACT
238023458 TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
130 TTAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
238023499 CAGCAGGGTG
Statistics
Matches: 164, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
168 67 0.41
169 45 0.27
170 52 0.32
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (170 bp):
ATTCTCATACACCTTGTAGGCTCTATGTACCCAACCAAAACTCTAAGCCATACTCTTCCCATGTG
TATTCCTTCTTCACTATAAAATTCCCTGTAATTAATCCTTAGATACCTCCAATAGGTGGACACTT
TAATGCTAGTATGTTCCAATACTCTAACTCACCAGCAAGT
Found at i:238026994 original size:68 final size:68
Alignment explanation
Indices: 238026905--238027062 Score: 289
Period size: 68 Copynumber: 2.3 Consensus size: 68
238026895 TTCACTTGGA
* * *
238026905 ATCACTCATGTGGCCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCC
238026970 CGT
66 CGT
238026973 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCC
238027038 CGT
66 CGT
238027041 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
238027063 TATATAGTAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.32
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTATCTACATGGGATACATCC
CGT
Found at i:238032147 original size:40 final size:40
Alignment explanation
Indices: 238032073--238032218 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
238032063 CCGCACCAAG
* * * * * *
238032073 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
238032113 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
238032153 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
*
238032193 GCCTTCGGGTCTTAACCCGGATATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
238032219 TTTTCAGCAT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:238032233 original size:40 final size:40
Alignment explanation
Indices: 238032105--238032256 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
238032095 ATCACGATTT
* * * * *
238032105 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
238032145 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
* * **
238032185 GCACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-A
* * *
238032225 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
238032257 CATTCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
39 4 0.04
40 91 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
Found at i:238040214 original size:40 final size:40
Alignment explanation
Indices: 238040140--238040323 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
238040130 CCGCACCAAG
* * * * * *
238040140 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
238040180 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
238040220 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
238040260 GCCTTCGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-T
* *
238040300 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
238040324 CATTCAATTT
Statistics
Matches: 118, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 111 0.94
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:238044807 original size:40 final size:40
Alignment explanation
Indices: 238044752--238044961 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
238044742 AACATTGGAA
238044752 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
238044792 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
238044832 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
238044872 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
238044911 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
238044952 CTATATCCGG
1 ATATATCCGG
238044962 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:238052936 original size:40 final size:40
Alignment explanation
Indices: 238052881--238053090 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
238052871 AACATTGGAA
238052881 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
238052921 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
238052961 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
238053001 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
238053040 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
238053081 CTATATCCGG
1 ATATATCCGG
238053091 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:238058998 original size:66 final size:68
Alignment explanation
Indices: 238058922--238059108 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
238058912 TAGTACCACT
*
238058922 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
238058984 CACG
65 CACG
238058988 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
238059053 ATCACG
63 ATCACG
238059059 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
238059109 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:238059033 original size:71 final size:71
Alignment explanation
Indices: 238058945--238059108 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
238058935 CGATTTGTCT
238058945 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
238059010 CTTTCA
66 CTTTCA
238059016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
238059081 CTTTCA
66 CTTTCA
238059087 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
238059109 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:238059146 original size:71 final size:70
Alignment explanation
Indices: 238058945--238059142 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
238058935 CGATTTGTCT
* * *
238058945 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
238059010 CTTTCA
65 CTTTCA
* * *
238059016 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
238059081 CTTTCA
65 CTTTCA
* *
238059087 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
238059143 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:238067438 original size:39 final size:39
Alignment explanation
Indices: 238067384--238067473 Score: 101
Period size: 39 Copynumber: 2.3 Consensus size: 39
238067374 AAACCAAGTA
** * * *
238067384 CCTTCGGGGTTTAG-CCGGATATAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGG-TATAACAACTAGCACAAATG
* *
238067423 CCTTCGGGACTTAGCCCGGTATAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTATAACAACTAGCACAAATG
238067462 CCTTCGGGACTT
1 CCTTCGGGACTT
238067474 TGTAACACCC
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 39 0.91
40 4 0.09
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGTATAACAACTAGCACAAATG
Found at i:238068876 original size:40 final size:40
Alignment explanation
Indices: 238068827--238069072 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
238068817 TCTTCGGAAT
* ** *
238068827 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
* * ***
238068866 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
* * *
238068906 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
* ***
238068946 TTAGCCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
*
238068986 TTAGCCCGGATAT-ACAAC-TGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
* * *
238069024 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTTGCACAAATGCCTTCGGGTC
238069064 TTAGCCCGG
1 TTAGCCCGG
238069073 GTATCATTCA
Statistics
Matches: 171, Mismatches: 32, Indels: 7
0.81 0.15 0.03
Matches are distributed among these distances:
38 32 0.19
39 9 0.05
40 130 0.76
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTTGCACAAATGCCTTCGGGTC
Found at i:238068954 original size:80 final size:79
Alignment explanation
Indices: 238068827--238069072 Score: 345
Period size: 80 Copynumber: 3.1 Consensus size: 79
238068817 TCTTCGGAAT
* * *
238068827 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCA
1 TTAGCCCGGATATAACAAC-TGCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCA
238068890 CAAATGCCTTCGGGTC
64 CAAATGCCTTCGGGTC
*
238068906 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTCTTAGCCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAACAACT-GCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCAC
238068971 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* ** * * *
238068986 TTAGCCCGGATAT-ACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATA
1 TTAGCCCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCACA
*
238069050 AATGCCTTCGGGAC
66 AATGCCTTCGGGTC
238069064 TTAGCCCGG
1 TTAGCCCGG
238069073 GTATCATTCA
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
78 60 0.39
79 10 0.07
80 80 0.53
81 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
TTAGCCCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTGGTAACTTGCACA
AATGCCTTCGGGTC
Found at i:238069038 original size:118 final size:120
Alignment explanation
Indices: 238068847--238069072 Score: 323
Period size: 118 Copynumber: 1.9 Consensus size: 120
238068837 ATAACCACAA
* * **
238068847 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTTGCACAAATGCCTTCGGGTCTTAGCC
* * *
238068912 CGGATATAA-CAACTCGCACGAATGCCTTCGAGTCTTAGCCCGGATTTGGTAACTT
66 CGGATATAATC-ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATTTGGTAACTT
* *
238068967 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT-ACAAC-TGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTTGCACAAATGCCTTCGGGTCTTAGCC
* *
238069030 CGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
66 CGGATATAATCACTAGCACAAATGCCTTCGAGACTTAGCCCGG
238069073 GTATCATTCA
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
118 61 0.65
119 4 0.04
120 29 0.31
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATGACAACTTGCACAAATGCCTTCGGGTCTTAGCC
CGGATATAATCACTAGCACAAATGCCTTCGAGACTTAGCCCGGATTTGGTAACTT
Found at i:238092426 original size:38 final size:39
Alignment explanation
Indices: 238092376--238092458 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 39
238092366 TATGGTAACC
238092376 CGCACAAATGCCTTCGGACTTA-ACCGGATATCACAACT
1 CGCACAAATGCCTTCGGACTTAGACCGGATATCACAACT
* * * *
238092414 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAAATGCCTTCGGACTTAGACCGGATATCACAACT
238092453 CGCACA
1 CGCACA
238092459 TTCATACACA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 20 0.50
39 20 0.50
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.22
Consensus pattern (39 bp):
CGCACAAATGCCTTCGGACTTAGACCGGATATCACAACT
Found at i:238092983 original size:24 final size:25
Alignment explanation
Indices: 238092938--238092988 Score: 95
Period size: 24 Copynumber: 2.1 Consensus size: 25
238092928 CAATTTCACA
238092938 AACATTCTTCAACCATTTCTTCTTT
1 AACATTCTTCAACCATTTCTTCTTT
238092963 AACATTCTTCAA-CATTTCTTCTTT
1 AACATTCTTCAACCATTTCTTCTTT
238092987 AA
1 AA
238092989 AAAACATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.27, C:0.25, G:0.00, T:0.47
Consensus pattern (25 bp):
AACATTCTTCAACCATTTCTTCTTT
Found at i:238095196 original size:15 final size:15
Alignment explanation
Indices: 238095172--238095219 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
238095162 AGGAAACCGA
238095172 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
238095187 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
238095201 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
238095217 ATA
1 ATA
238095220 CGATACTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:238098340 original size:46 final size:46
Alignment explanation
Indices: 238098168--238098340 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
238098158 TAACCGCCCC
* * * * *
238098168 TAAGTGAAATCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
238098214 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
238098262 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
238098307 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
238098341 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:238101172 original size:40 final size:40
Alignment explanation
Indices: 238101123--238101290 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
238101113 TCTTCGGAAT
* * *
238101123 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
238101162 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
238101202 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
238101242 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
238101282 TTAGCCCGG
1 TTAGCCCGG
238101291 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:238109512 original size:40 final size:40
Alignment explanation
Indices: 238109405--238109570 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
238109395 CTCTTCGGAA
* * *
238109405 TTAG-CCGGATATAACCACAAGCAC-ATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
238109443 TTA-ACCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
238109482 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
238109522 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
238109562 TTAGCCCGG
1 TTAGCCCGG
238109571 TATCATTCAA
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
38 16 0.15
39 16 0.15
40 72 0.69
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:238109555 original size:80 final size:78
Alignment explanation
Indices: 238109397--238109570 Score: 199
Period size: 80 Copynumber: 2.2 Consensus size: 78
238109387 AACCGAGTCT
* * * * **
238109397 CTTC-GGAATTAG-CCGGATATAACCACAAGCACATTGCCTTCGGGTCTTAACCGGATTTGGTAA
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATGCCTTCGGGTCTTAACCGGATATAATAA
*
238109460 CTTGCACAAATGC
66 CTAGCACAAATGC
* ** *
238109473 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCAC-AATGCCTTCGGGTCTTA-ACCGGATATAAT
* *
238109538 CACTAGCATAAATGC
64 AACTAGCACAAATGC
238109553 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
238109571 TATCATTCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
76 4 0.05
77 6 0.08
78 17 0.21
79 16 0.20
80 37 0.46
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAATGCCTTCGGGTCTTAACCGGATATAATAA
CTAGCACAAATGC
Found at i:238113189 original size:39 final size:39
Alignment explanation
Indices: 238113127--238113256 Score: 219
Period size: 38 Copynumber: 3.4 Consensus size: 39
238113117 GGTCTTTAAC
** *
238113127 CCGGATAT-TTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
238113165 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
238113204 -CGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
238113242 CCGGATATATTTCCA
1 CCGGATATATTTCCA
238113257 ATCTCATATA
Statistics
Matches: 87, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
38 46 0.53
39 41 0.47
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:238122001 original size:39 final size:39
Alignment explanation
Indices: 238121954--238122136 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
238121944 AATGTTCGAG
238121954 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
238121993 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
238122032 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
238122071 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
238122111 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
238122137 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:238129966 original size:22 final size:22
Alignment explanation
Indices: 238129938--238130062 Score: 71
Period size: 22 Copynumber: 5.4 Consensus size: 22
238129928 ATATGTATAT
238129938 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
238129960 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
238129982 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
***
238130007 ATGTGATGAA-TATGAACAT-GCACA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
238130031 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
238130054 ATGTGATAA
1 ATGTGATAA
238130063 ATGTGAAACA
Statistics
Matches: 77, Mismatches: 10, Indels: 32
0.65 0.08 0.27
Matches are distributed among these distances:
22 26 0.34
23 17 0.22
24 17 0.22
25 17 0.22
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:238130108 original size:22 final size:22
Alignment explanation
Indices: 238130032--238130108 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
238130022 ACATGCACAT
*
238130032 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
* *
238130054 ATGTGATAAATGTG-AAACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
238130079 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
238130102 ATGTGAT
1 ATGTGAT
238130109 GAACGTAGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
22 14 0.33
23 6 0.14
24 9 0.21
25 6 0.14
26 7 0.17
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:238130129 original size:95 final size:94
Alignment explanation
Indices: 238129913--238130145 Score: 317
Period size: 95 Copynumber: 2.5 Consensus size: 94
238129903 TTAGGATTTT
* * * *
238129913 ATGTGATGGATGTGAATATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
* *
238129978 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCAGAATGGCCA
* *
238130007 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAC
1 ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTG-AAC
238130072 ATGCATATATGTGATAAGGCAGAATGGCCA
65 ATGCATATATGTGATAAGGCAGAATGGCCA
* ** *
238130102 ATGTGATGAACGTA-GAA-GTGTATATATGTGGGAAAGCCGAATGG
1 ATGTGATGAA--TATGAACATGTATATATGTGATAAGGCCGAATGG
238130146 TTAATGCGAA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
94 55 0.45
95 62 0.51
96 3 0.02
97 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
TGCATATATGTGATAAGGCAGAATGGCCA
Found at i:238130145 original size:47 final size:47
Alignment explanation
Indices: 238129913--238130111 Score: 317
Period size: 47 Copynumber: 4.2 Consensus size: 47
238129903 TTAGGATTTT
* * *
238129913 ATGTGATGGATGTGAATATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
238129960 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
238130007 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
238130054 ATGTGATAAATGTGAAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTG-AACATGCATATATGTGATAAGGCCGAATGGCCA
238130102 ATGTGATGAA
1 ATGTGATGAA
238130112 CGTAGAAGTG
Statistics
Matches: 139, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 99 0.71
48 40 0.29
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:238130183 original size:45 final size:46
Alignment explanation
Indices: 238130125--238130214 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 46
238130115 AGAAGTGTAT
* *
238130125 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATAT-TATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
238130170 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
238130215 TGTATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 30 0.77
46 9 0.23
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.28
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:238131294 original size:63 final size:63
Alignment explanation
Indices: 238131195--238131316 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 63
238131185 TGAGTTACAA
* *
238131195 GTCCGGTAATGCCCCTTACCTATTCCGGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
1 GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
* * * * * *
238131258 GTCCGGTGACGCCCCTTACCTATTCTAGTGATGGTTACGGGATAGGGGTGTTGCATTTT
1 GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTT
238131317 ATTAGTATCA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (63 bp):
GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
Found at i:238136298 original size:40 final size:39
Alignment explanation
Indices: 238136133--238136316 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
238136123 AAATTGAATG
* * *
238136133 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
238136173 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
238136213 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
238136253 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
238136292 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
238136317 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:238136341 original size:80 final size:81
Alignment explanation
Indices: 238136173--238136361 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
238136163 GCTGGAAATT
* * * *
238136173 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
238136238 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
238136254 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
238136317 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
238136333 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
238136362 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.