Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 759 of 770
Found at i:240781339 original size:25 final size:26
Alignment explanation
Indices: 240781291--240781343 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
240781281 TAATGATTTA
240781291 CGACTTAAGGCATCCGCAACCACATT
1 CGACTTAAGGCATCCGCAACCACATT
240781317 CGACTTAAGGCAT-CGCAACCACATT
1 CGACTTAAGGCATCCGCAACCACATT
240781342 CG
1 CG
240781344 CCTTTCCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.52
26 13 0.48
ACGTcount: A:0.30, C:0.34, G:0.17, T:0.19
Consensus pattern (26 bp):
CGACTTAAGGCATCCGCAACCACATT
Found at i:240782935 original size:18 final size:18
Alignment explanation
Indices: 240782912--240782946 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
240782902 CCGGAAAACA
240782912 AGAACCTCGAAATACTAC
1 AGAACCTCGAAATACTAC
240782930 AGAACCTCGAAATACTA
1 AGAACCTCGAAATACTA
240782947 GGGGACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.26, G:0.11, T:0.17
Consensus pattern (18 bp):
AGAACCTCGAAATACTAC
Found at i:240786070 original size:39 final size:39
Alignment explanation
Indices: 240785989--240786151 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
240785979 TATGGTAACC
* *
240785989 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
240786029 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
240786068 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
240786107 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
240786146 CGCACA
1 CGCACA
240786152 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:240788293 original size:106 final size:106
Alignment explanation
Indices: 240788047--240788639 Score: 686
Period size: 106 Copynumber: 5.6 Consensus size: 106
240788037 ACAAGTGATA
* * * ** * *
240788047 ATATGATAAAGGTTAGCTAATTTAATATTGCAATCTAAGTTTCTTTGAGTTAGTTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
** *
240788112 CGCAACTCCTAAACA-A-CTTGATGACCTATATTCACAGCTG
66 CGCAACTCCTAAA-ATAGCTCAATGACCTACATTCACAGCTG
* *
240788152 ATATTATAAAGGTTAGTTAATTTAATATCACAACCTATGTTTCTTTGAGTTAGCTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * * *
240788217 CGCAACTCCTAAAATAGCTCAATAACCTACATTTATAGTTG
66 CGCAACTCCTAAAATAGCTCAATGACCTACATTCACAGCTG
* * *
240788258 ATATTATAAAGGTTAGTTTATTTAAGACCACAACCTAAGTTTCTTTGAGTTAGCTGATTTGAGAT
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * * * ** *
240788323 TGCAGCTCCTAAAACATCTCTCTAACCTACATTCACAGCTG
66 CGCAACTCCTAAAATAGCTCAATGACCTACATTCACAGCTG
* * * * * * *
240788364 ATATTATAAAAGTTAGCTAATTTGATATCGCAACCTAAGCTTCTTTAAGTTAGCTGATTTAAGAT
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * ***
240788429 CGTAACTCTTAAAATAGCTCAATGACCTATGCTCACAGCTG
66 CGCAACTCCTAAAATAGCTCAATGACCTACATTCACAGCTG
* * *
240788470 ATATTATAAAGGTTAGTTGATTTAAGATCGCAACCTAAGTTTCTTTGAGTTAGCTGATTTGAGAT
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
* * *
240788535 TGCAACTCCTAAAATAGCTCACTGACCTTCATTCACAGCTG
66 CGCAACTCCTAAAATAGCTCAATGACCTACATTCACAGCTG
* * * * * * * * *
240788576 ATGTGATAAAGGTTAGCTGATTTAAAATCACAACCTAAGTTTATTTGAATTCGCTGCTTTAAGA
1 ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGA
240788640 AACAACTCTT
Statistics
Matches: 410, Mismatches: 76, Indels: 3
0.84 0.16 0.01
Matches are distributed among these distances:
104 1 0.00
105 72 0.18
106 337 0.82
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (106 bp):
ATATTATAAAGGTTAGTTAATTTAAGATCACAACCTAAGTTTCTTTGAGTTAGCTGATTTAAGAT
CGCAACTCCTAAAATAGCTCAATGACCTACATTCACAGCTG
Found at i:240793457 original size:71 final size:71
Alignment explanation
Indices: 240793369--240793502 Score: 268
Period size: 71 Copynumber: 1.9 Consensus size: 71
240793359 GAGATGTATC
240793369 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
240793434 AGGACA
66 AGGACA
240793440 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGT
240793503 TAACACCCCT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:240794886 original size:71 final size:71
Alignment explanation
Indices: 240794802--240794965 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
240794792 CGATTTGTCT
240794802 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
240794867 CTTTCA
66 CTTTCA
240794873 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
240794938 CTTTCA
66 CTTTCA
240794944 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
240794966 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:240795003 original size:71 final size:70
Alignment explanation
Indices: 240794802--240794999 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
240794792 CGATTTGTCT
* * * *
240794802 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
240794867 CTTTCA
65 CTTTCA
* * * *
240794873 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
240794938 CTTTCA
65 CTTTCA
* *
240794944 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
240795000 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:240802016 original size:71 final size:71
Alignment explanation
Indices: 240801932--240802095 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
240801922 CGATTTGTCT
240801932 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
240801997 CTTTCA
66 CTTTCA
240802003 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
240802068 CTTTCA
66 CTTTCA
240802074 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
240802096 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:240802133 original size:71 final size:70
Alignment explanation
Indices: 240801932--240802129 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
240801922 CGATTTGTCT
* * * *
240801932 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
240801997 CTTTCA
65 CTTTCA
* * * *
240802003 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
240802068 CTTTCA
65 CTTTCA
* *
240802074 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
240802130 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:240807062 original size:79 final size:81
Alignment explanation
Indices: 240806961--240807145 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
240806951 ACGACTCGCT
** * *
240806961 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
240807024 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
240807041 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
240807105 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
240807121 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
240807146 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:240807145 original size:40 final size:39
Alignment explanation
Indices: 240806954--240807145 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
240806944 GGATATAACG
* ** * *
240806954 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
240806994 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
240807034 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
240807073 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
240807113 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
240807146 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:240812910 original size:32 final size:32
Alignment explanation
Indices: 240812869--240812932 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
240812859 TAAGCTCAAG
240812869 AAATTCCTTCCGTTTTTGATCAACAAATCTCT
1 AAATTCCTTCCGTTTTTGATCAACAAATCTCT
240812901 AAATTCCTTCCGTTTTTGATCAACAAATCTCT
1 AAATTCCTTCCGTTTTTGATCAACAAATCTCT
240812933 GACTGATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.41
Consensus pattern (32 bp):
AAATTCCTTCCGTTTTTGATCAACAAATCTCT
Found at i:240821505 original size:24 final size:23
Alignment explanation
Indices: 240821473--240821581 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
240821463 ACCAAACGTT
* **
240821473 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
240821497 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
240821521 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
240821545 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
240821569 GCACACATAGTGC
1 GCACACATAGTGC
240821582 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:240821547 original size:48 final size:48
Alignment explanation
Indices: 240821473--240821581 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
240821463 ACCAAACGTT
* **
240821473 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
240821521 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
240821569 GCACACATAGTGC
1 GCACACATAGTGC
240821582 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:240829363 original size:24 final size:23
Alignment explanation
Indices: 240829331--240829439 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
240829321 ACCAAACGTT
* **
240829331 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
240829355 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
240829379 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
240829403 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
240829427 GCACACATAGTGC
1 GCACACATAGTGC
240829440 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:240829405 original size:48 final size:48
Alignment explanation
Indices: 240829331--240829439 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
240829321 ACCAAACGTT
* **
240829331 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
240829379 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
240829427 GCACACATAGTGC
1 GCACACATAGTGC
240829440 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:240834980 original size:20 final size:20
Alignment explanation
Indices: 240834955--240834992 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
240834945 GTTTATTCGC
*
240834955 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
240834975 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
240834993 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:240836654 original size:28 final size:28
Alignment explanation
Indices: 240836622--240836690 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
240836612 GCGTAGATCA
240836622 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
240836650 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
240836678 CGATA-TACCCCTA
1 CGAAATTACCCCTA
240836691 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:240839662 original size:40 final size:40
Alignment explanation
Indices: 240839617--240839746 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
240839607 CGGAATACAA
240839617 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
240839657 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
240839697 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*
240839737 CCGGAAATAA
1 CCGGATATAA
240839747 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:240846162 original size:20 final size:20
Alignment explanation
Indices: 240846137--240846174 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
240846127 GTTTATTCGC
*
240846137 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
240846157 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
240846175 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:240847836 original size:28 final size:28
Alignment explanation
Indices: 240847789--240847847 Score: 102
Period size: 27 Copynumber: 2.1 Consensus size: 28
240847779 GCGTAGATCA
240847789 CGAAATTACCCCTAAAGAGCAAAAATTAC
1 CGAAATTACCCCTAAAGAGC-AAAATTAC
240847818 CGAAATTA-CCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
240847845 CGA
1 CGA
240847848 TATACCCNNN
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 11 0.37
28 11 0.37
29 8 0.27
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:240851091 original size:29 final size:29
Alignment explanation
Indices: 240851058--240851189 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
240851048 GTGACGAGAT
*
240851058 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
240851087 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
240851116 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
240851145 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
240851174 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
240851190 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:240858812 original size:28 final size:29
Alignment explanation
Indices: 240858781--240858911 Score: 131
Period size: 29 Copynumber: 4.6 Consensus size: 29
240858771 GTGACGAGAT
240858781 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
240858809 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
240858838 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
240858867 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
240858896 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
240858912 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:240858848 original size:29 final size:28
Alignment explanation
Indices: 240858781--240858852 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
240858771 GTGACGAGAT
*
240858781 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
240858809 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
240858838 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
240858853 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:240864582 original size:40 final size:40
Alignment explanation
Indices: 240864522--240864684 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
240864512 CGGGATTTAA
* ** *
240864522 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
* *** *
240864562 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
240864602 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
240864642 CCGGATATAATC-ACTAGCATAAATGCCTTC-GGACTTAGC
1 CCGGATATAA-CAACTCGCACAATTGCCTTCGGGTCTTAGC
240864681 CCGG
1 CCGG
240864685 GTATCATTCA
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
39 14 0.13
40 87 0.84
41 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:240864669 original size:80 final size:79
Alignment explanation
Indices: 240864522--240864684 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 79
240864512 CGGGATTTAA
* * ** * *
240864522 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
*
240864587 CCTTCGGGTCTTAGC
66 CCTTC-GGACTTAGC
** * * *
240864602 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAAT
1 CCGGATATAACAACAAGCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAAT
240864666 GCCTTCGGACTTAGC
65 GCCTTCGGACTTAGC
240864681 CCGG
1 CCGG
240864685 GTATCATTCA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
79 12 0.17
80 56 0.80
81 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATG
CCTTCGGACTTAGC
Found at i:240879835 original size:29 final size:28
Alignment explanation
Indices: 240879803--240879905 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
240879793 GGGACGAGAT
* *
240879803 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
240879832 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
240879861 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
240879890 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
240879906 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:240886873 original size:29 final size:28
Alignment explanation
Indices: 240886841--240886943 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
240886831 GGGACGAGAT
* *
240886841 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
240886870 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
240886899 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
240886928 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
240886944 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:240896246 original size:40 final size:40
Alignment explanation
Indices: 240896191--240896407 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
240896181 CGGATGATAA
* *
240896191 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
240896231 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
240896271 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
240896311 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
240896351 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
240896390 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
240896408 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 14 0.08
39 9 0.05
40 143 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:240904338 original size:79 final size:80
Alignment explanation
Indices: 240904206--240904448 Score: 393
Period size: 79 Copynumber: 3.1 Consensus size: 80
240904196 GGATGATAAT
* *
240904206 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATT
240904270 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
240904286 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
240904350 GTGCGAGTTACTATA
66 GTGCGAGTTACTATA
**
240904365 TCCGGGCTAAGTCCCGAA-GCATTTGTGCGAACTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
* **
240904429 GAGCGAGTGGCTATA
66 GTGCGAGTTACTATA
240904444 TCCGG
1 TCCGG
240904449 TTAAAGCCCG
Statistics
Matches: 154, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
79 136 0.88
80 18 0.12
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:240904460 original size:39 final size:40
Alignment explanation
Indices: 240904206--240904448 Score: 393
Period size: 40 Copynumber: 6.1 Consensus size: 40
240904196 GGATGATAAT
* *
240904206 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
240904245 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
240904286 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
240904325 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
240904365 TCCGGGCTAAGTCCCGAA-GCATTTGTGCGAACTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* **
240904404 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
240904444 TCCGG
1 TCCGG
240904449 TTAAAGCCCG
Statistics
Matches: 191, Mismatches: 9, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
39 76 0.40
40 114 0.60
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:240907709 original size:40 final size:40
Alignment explanation
Indices: 240907643--240907809 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
240907633 AAATTGAATG
* * *
240907643 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
240907682 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
240907722 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
240907762 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
240907802 ATATCCGG
1 ATATCCGG
240907810 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:240909070 original size:40 final size:39
Alignment explanation
Indices: 240909025--240909105 Score: 153
Period size: 40 Copynumber: 2.1 Consensus size: 39
240909015 ACTCGAGATA
240909025 TGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGAC
1 TGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCT-AC
240909065 TGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTAC
1 TGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTAC
240909104 TG
1 TG
240909106 GAAATGTCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 4 0.10
40 37 0.90
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (39 bp):
TGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTAC
Found at i:240909094 original size:22 final size:22
Alignment explanation
Indices: 240909029--240909094 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
240909019 GAGATATGAT
240909029 TTTTAAGGCGACAGTGACGCAG
1 TTTTAAGGCGACAGTGACGCAG
* *
240909051 TTTTCCA-GC--C--TGACTG-AT
1 TTTT-AAGGCGACAGTGAC-GCAG
240909069 TTTTAAGGCGACAGTGACGCAG
1 TTTTAAGGCGACAGTGACGCAG
240909091 TTTT
1 TTTT
240909095 CCAGCCTACT
Statistics
Matches: 32, Mismatches: 4, Indels: 16
0.62 0.08 0.31
Matches are distributed among these distances:
17 1 0.03
18 11 0.34
19 1 0.03
20 2 0.06
21 1 0.03
22 15 0.47
23 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (22 bp):
TTTTAAGGCGACAGTGACGCAG
Found at i:240914091 original size:17 final size:17
Alignment explanation
Indices: 240914069--240914102 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
240914059 TGCTTATTGT
240914069 ATGTGGAATTGGTATGC
1 ATGTGGAATTGGTATGC
240914086 ATGTGGAATTGGTATGC
1 ATGTGGAATTGGTATGC
240914103 CTAAGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.06, G:0.35, T:0.35
Consensus pattern (17 bp):
ATGTGGAATTGGTATGC
Found at i:240916270 original size:40 final size:40
Alignment explanation
Indices: 240916204--240916370 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
240916194 AAATTGAATG
* * *
240916204 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
240916243 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
240916283 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
240916323 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
240916363 ATATCCGG
1 ATATCCGG
240916371 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:240921818 original size:29 final size:29
Alignment explanation
Indices: 240921784--240921861 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
240921774 GTGACGAGAT
* *
240921784 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
240921813 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
240921842 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
240921862 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:240936626 original size:77 final size:79
Alignment explanation
Indices: 240936482--240936704 Score: 276
Period size: 77 Copynumber: 2.8 Consensus size: 79
240936472 GCTACTCGTT
*
240936482 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
240936547 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* **
240936562 CAAATGCCTTCGG-CTTAGCCCGGA-ATTA-TAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
240936623 GATTTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * * *
240936639 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
240936703 GA
64 GA
240936705 CATCATTCGA
Statistics
Matches: 126, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
76 3 0.02
77 56 0.44
78 11 0.09
79 14 0.11
80 31 0.25
81 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:240936688 original size:117 final size:119
Alignment explanation
Indices: 240936482--240936704 Score: 296
Period size: 117 Copynumber: 1.9 Consensus size: 119
240936472 GCTACTCGTT
240936482 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
240936547 ATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGAATTATAACTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTATAACTCGCA
* * * **
240936599 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
*
240936661 CGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
240936705 CATCATTCGA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
116 6 0.07
117 63 0.68
118 12 0.13
119 11 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTATAACTCGCA
Found at i:240936704 original size:40 final size:39
Alignment explanation
Indices: 240936463--240936704 Score: 269
Period size: 40 Copynumber: 6.1 Consensus size: 39
240936453 CGGAGTTTAA
** *
240936463 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* *
240936503 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
*
240936543 CCGGATTTAGTAACTCGCACAAATGCCTTCGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
*
240936581 CCGGA-ATTA-TAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* * *
240936620 CCGGATTTAGTAACTCGCACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
240936660 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAGC
240936700 CCGGA
1 CCGGA
240936705 CATCATTCGA
Statistics
Matches: 177, Mismatches: 17, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
37 22 0.12
38 12 0.07
39 15 0.08
40 118 0.67
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:240940546 original size:49 final size:49
Alignment explanation
Indices: 240940490--240940703 Score: 367
Period size: 49 Copynumber: 4.4 Consensus size: 49
240940480 TACATATATG
* * *
240940490 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
240940539 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
240940588 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
240940637 TGTGAT-AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
240940685 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
240940704 TAATGTAAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 48 0.30
49 111 0.70
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:240940690 original size:97 final size:98
Alignment explanation
Indices: 240940490--240940708 Score: 368
Period size: 97 Copynumber: 2.2 Consensus size: 98
240940480 TACATATATG
*
240940490 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
240940555 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * * *
240940588 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
240940652 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
240940685 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
240940709 TAAAATATAT
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
97 62 0.55
98 50 0.45
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (98 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:240940855 original size:37 final size:37
Alignment explanation
Indices: 240940805--240940926 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
240940795 GGAATATGTT
*
240940805 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
240940842 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
240940879 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
240940916 CCGGGTAAGAC
1 CCGGGTAAGAC
240940927 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:240943022 original size:29 final size:29
Alignment explanation
Indices: 240942980--240943143 Score: 310
Period size: 29 Copynumber: 5.7 Consensus size: 29
240942970 GCGAATGATT
240942980 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
240943009 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
240943038 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
240943067 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
240943096 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
240943125 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
240943144 TTTTTCAACA
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 133 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:240943725 original size:40 final size:41
Alignment explanation
Indices: 240943627--240943725 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
240943617 TTCGAATGGT
* ** * *
240943627 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
240943668 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
240943709 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
240943726 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:240946487 original size:49 final size:49
Alignment explanation
Indices: 240946431--240946636 Score: 344
Period size: 49 Copynumber: 4.2 Consensus size: 49
240946421 TACATATATG
* * * *
240946431 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
240946480 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
240946529 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
240946578 TGTGATGAAGGCCTAATGGCCGATGTGGTGAATGTG-AAGTGT-TGTATA
1 TGTGAT-AAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
240946626 TGTGATAAGGC
1 TGTGATAAGGC
240946637 AATGGCTAAT
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
47 5 0.03
48 12 0.08
49 105 0.70
50 28 0.19
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:240946851 original size:36 final size:36
Alignment explanation
Indices: 240946740--240946856 Score: 186
Period size: 35 Copynumber: 3.3 Consensus size: 36
240946730 GGAATATGTT
*
240946740 CCGGGTGAGACCGATGA-TACGTGTGGAGATTATGA
1 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
240946775 CCGGGTAAGACCGATGACTA-GTGTGGAGATTATGA
1 CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
240946810 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATG-
1 CCGGGTAAGA-CCGATGACTACGTGTGGAGATTATGA
*
240946846 TCGGGTAAGAC
1 CCGGGTAAGAC
240946857 TTCTTTTATA
Statistics
Matches: 77, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
35 42 0.55
36 21 0.27
37 14 0.18
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.22
Consensus pattern (36 bp):
CCGGGTAAGACCGATGACTACGTGTGGAGATTATGA
Found at i:240949856 original size:39 final size:39
Alignment explanation
Indices: 240949775--240949937 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
240949765 TATGGTAACC
* *
240949775 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
240949815 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
240949854 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
240949893 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
240949932 CGCACA
1 CGCACA
240949938 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:240957729 original size:39 final size:39
Alignment explanation
Indices: 240957683--240957825 Score: 198
Period size: 39 Copynumber: 3.7 Consensus size: 39
240957673 CCGCACAAAG
* *
240957683 GCCTTCGGGACTTAACCCGGATATCACAA-TTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAACTAGCACAATT
* * *
240957722 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTAGCACAATT
* * *
240957761 GTCTTCGGGCTTAGCCCAGATATCATAACTAGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAACTAGCACAATT
240957800 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
240957826 TCGAACATTC
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 17 0.18
39 75 0.82
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAACTAGCACAATT
Found at i:240959907 original size:40 final size:40
Alignment explanation
Indices: 240959682--240959879 Score: 276
Period size: 40 Copynumber: 5.0 Consensus size: 40
240959672 TCGAATGATG
* * * *
240959682 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAATTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTT-ACTAAA
*
240959722 TTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
240959762 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
240959802 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
240959842 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
240959880 TAACCGGGCT
Statistics
Matches: 146, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 134 0.92
41 11 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:240959921 original size:40 final size:40
Alignment explanation
Indices: 240959683--240959926 Score: 135
Period size: 40 Copynumber: 6.1 Consensus size: 40
240959673 CGAATGATGT
** * ** *
240959683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAATTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCT-ACTATAA
* * ** *
240959723 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** *
240959762 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** *
240959802 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
240959842 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
240959883 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
240959923 CCGG
1 CCGG
240959927 TTAAACTCCG
Statistics
Matches: 183, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 4 0.02
40 166 0.91
41 13 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:240959925 original size:80 final size:79
Alignment explanation
Indices: 240959689--240959930 Score: 251
Period size: 80 Copynumber: 3.0 Consensus size: 79
240959679 ATGTCCGGGC
* ** * * **
240959689 TAAGTCCCGAAGGC-TTTGTGCTAATTGACTATATTCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGCT-ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGA
*
240959753 GTTACTAAATCCGGAC
65 GTTACTAAATCCGG-T
* **
240959769 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGA
240959833 GTTACTAAATCCGGGT
65 GTTACTAAATCC-GGT
* * *
240959849 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACG
*
240959912 AG-TAGCTATATCCGGT
64 AGTTA-CTAAATCCGGT
240959928 TAA
1 TAA
240959931 ACTCCGAAGG
Statistics
Matches: 143, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
79 10 0.07
80 118 0.83
81 15 0.10
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
TTACTAAATCCGGT
Found at i:240963903 original size:40 final size:40
Alignment explanation
Indices: 240963858--240964024 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
240963848 CGGAATACAA
240963858 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * * *
240963898 CCGGATATAACGACTCGCACAAATGCCTTCGGATATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
240963938 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
** *
240963978 CCGGATATAGTCACTA-GCAC-AATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
240964017 CCGGATAT
1 CCGGATAT
240964025 CATTCAATTG
Statistics
Matches: 110, Mismatches: 15, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
39 18 0.16
40 92 0.84
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:240963998 original size:80 final size:79
Alignment explanation
Indices: 240963858--240964024 Score: 237
Period size: 80 Copynumber: 2.1 Consensus size: 79
240963848 CGGAATACAA
* *
240963858 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
240963923 CCTTCGGATATTAGC
66 CCTTCGG-TATTAAC
** * *
240963938 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAATT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
240964002 GCCTTCGGTCTTAAC
65 GCCTTCGGTATTAAC
240964017 CCGGATAT
1 CCGGATAT
240964025 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 13 0.17
80 64 0.82
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGTATTAAC
Found at i:240964126 original size:123 final size:124
Alignment explanation
Indices: 240963982--240964205 Score: 297
Period size: 123 Copynumber: 1.8 Consensus size: 124
240963972 CTTAGCCCGG
* * * * * *
240963982 ATATAGTCACTAGCACAATTGCCTTCGGTCTTAACCCGGATATCATTCAATTGCTCATGCACACA
1 ATATAATCACTAGCACAATTGCCTTCGGACTTAACCCGGATACCATTCAAATACTCATACACACA
* *
240964047 TACATCAATAATCATTAAACATTCAT-GTTTCATTTTCGTTACTAAGGCTCAAACACAA
66 TACATCAATAATCATTAAACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
* * * *
240964105 ATATAATCACTAGCATAATTGCCTTCGGACTTAGCCCGGGTACCATTCAAATACTCATACACACG
1 ATATAATCACTAGCACAATTGCCTTCGGACTTAACCCGGATACCATTCAAATACTCATACACACA
** * *
240964170 TATTTCAGTAATCATTACACATCCATAATTTCATTT
66 TACATCAATAATCATTAAACATCCATAATTTCATTT
240964206 CACATAATTC
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
123 76 0.90
124 8 0.10
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (124 bp):
ATATAATCACTAGCACAATTGCCTTCGGACTTAACCCGGATACCATTCAAATACTCATACACACA
TACATCAATAATCATTAAACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
Found at i:240972054 original size:40 final size:40
Alignment explanation
Indices: 240972009--240972176 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
240971999 CGGAATACAA
240972009 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
240972049 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
240972089 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
** *
240972129 CCGGATATAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
240972169 CCGGATAT
1 CCGGATAT
240972177 CATTCAATTG
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 2 0.02
40 111 0.98
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:240972149 original size:80 final size:80
Alignment explanation
Indices: 240972009--240972176 Score: 248
Period size: 80 Copynumber: 2.1 Consensus size: 80
240971999 CGGAATACAA
* *
240972009 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
240972074 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** * *
240972089 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAATT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTAGCACAAAT
*
240972153 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
240972169 CCGGATAT
1 CCGGATAT
240972177 CATTCAATTG
Statistics
Matches: 79, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 78 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:240972282 original size:124 final size:124
Alignment explanation
Indices: 240972133--240972357 Score: 299
Period size: 124 Copynumber: 1.8 Consensus size: 124
240972123 CTTAGCCCGG
* * * * * *
240972133 ATATAGTCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATCATTCAATTGCTCATGCACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* *
240972198 ATACATCAATAATCATTAAACATTCAT-GTTTCATTTTCGTTACTAAGGCTCAAACACAA
66 ATA-ATCAATAATCATTAAACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
* * *
240972257 ATATAATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACAC
1 ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
* * * *
240972322 GTATTCAGTAATCATTACACATCCATAATTTCATTT
66 ATAATCAATAATCATTAAACATCCATAATTTCATTT
240972358 CACATAATTC
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
123 19 0.22
124 66 0.78
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (124 bp):
ATATAATCACTAGCACAATTGCCTTCGGGACTTAACCCGGATACCATTCAAATACTCATACACAC
ATAATCAATAATCATTAAACATCCATAATTTCATTTTCGTTACTAAGGCTCAAACACAA
Found at i:240974050 original size:47 final size:48
Alignment explanation
Indices: 240973996--240974104 Score: 157
Period size: 48 Copynumber: 2.3 Consensus size: 48
240973986 AAGGCTGTCA
*
240973996 CATATCCACTTAGCACCACGTT-AATGAATCAATATATGTAACCGTGG
1 CATATCCACTTAGCACCACGTTGAATGAATCAATATATGTAACCATGG
* * * *
240974043 CATATCCACTTAGCACCACGTTGCATGTATCAATATGTGTAATCATGG
1 CATATCCACTTAGCACCACGTTGAATGAATCAATATATGTAACCATGG
*
240974091 TATATCCACTTAGC
1 CATATCCACTTAGC
240974105 GCCATGTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
47 22 0.40
48 33 0.60
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (48 bp):
CATATCCACTTAGCACCACGTTGAATGAATCAATATATGTAACCATGG
Found at i:240977820 original size:2 final size:2
Alignment explanation
Indices: 240977809--240977837 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
240977799 ATTAAGTTAT
240977809 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
240977838 AAGTAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:240977871 original size:11 final size:10
Alignment explanation
Indices: 240977843--240977880 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
240977833 ATATAAAGTA
240977843 AAAGAAATAA-
1 AAAGAAA-AAG
240977853 AAAGAAAAAG
1 AAAGAAAAAG
240977863 AATAGAAAAAG
1 AA-AGAAAAAG
240977874 AAAGAAA
1 AAAGAAA
240977881 GGATGAAACG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:240980048 original size:46 final size:46
Alignment explanation
Indices: 240979996--240980219 Score: 373
Period size: 46 Copynumber: 4.9 Consensus size: 46
240979986 GTGCTCTCTA
240979996 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
240980042 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
240980088 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* *
240980133 ATATGAAA--TGTAAAACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
* * **
240980177 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
240980220 ATGACAGAAA
Statistics
Matches: 169, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
43 31 0.18
44 9 0.05
45 11 0.07
46 118 0.70
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:240980193 original size:89 final size:90
Alignment explanation
Indices: 240980008--240980219 Score: 345
Period size: 89 Copynumber: 2.3 Consensus size: 90
240979998 ATGAAATGTG
*
240980008 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAA-CTGATATGAAA-GTGTAAAACCATGGTTGAAAGA
* * **
240980073 TACCATGGCAACCTGATATGAAATGTG
64 TACCATGGCAACCTGACATGAAAAGAA
240980100 TAAGACCATGGTTGAAAGATACCATGGCAACTGATATGAAA-TGTAAAACCATGGTTGAAAGATA
1 TAAGACCATGGTTGAAAGATACCATGGCAACTGATATGAAAGTGTAAAACCATGGTTGAAAGATA
*
240980164 CCATGGCAACGTGACATGAAAAGAA
66 CCATGGCAACCTGACATGAAAAGAA
240980189 TAAGACCATGGTTGAAAGATACCATGGCAAC
1 TAAGACCATGGTTGAAAGATACCATGGCAAC
240980220 ATGACAGAAA
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
89 73 0.64
91 11 0.10
92 30 0.26
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.22
Consensus pattern (90 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACTGATATGAAAGTGTAAAACCATGGTTGAAAGATA
CCATGGCAACCTGACATGAAAAGAA
Found at i:240980225 original size:46 final size:46
Alignment explanation
Indices: 240979996--240980272 Score: 328
Period size: 46 Copynumber: 6.0 Consensus size: 46
240979986 GTGCTCTCTA
** *
240979996 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
** *
240980042 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
**
240980088 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC-TG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
240980133 ATATGAAATG--TAAAACCATGGTTGAAAGATACCATGGCAACGTG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
240980177 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * * *
240980223 ACA-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATATG-AAATG-A--A-TAAGACCATGGTTGAAAGATACCATGGCAACATG
240980273 TCAAAGATAA
Statistics
Matches: 213, Mismatches: 10, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
43 30 0.14
44 10 0.05
45 13 0.06
46 128 0.60
47 1 0.00
49 1 0.00
50 30 0.14
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
ATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:240984519 original size:93 final size:93
Alignment explanation
Indices: 240984407--240984578 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
240984397 GCCCATAAGT
* *
240984407 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
240984472 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
240984500 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
240984565 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
240984579 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:240984574 original size:46 final size:46
Alignment explanation
Indices: 240984399--240984574 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
240984389 TGTAACCCGC
* * *
240984399 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
240984445 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
240984495 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
240984538 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
240984575 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:240986966 original size:30 final size:30
Alignment explanation
Indices: 240986922--240987010 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
240986912 CAAAGATAAC
240986922 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
240986951 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
240986981 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
240987011 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:240986970 original size:15 final size:15
Alignment explanation
Indices: 240986922--240987001 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
240986912 CAAAGATAAC
*
240986922 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
240986936 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
240986951 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
240986966 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
240986981 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
240986996 AAGAAA
1 AAGAAA
240987002 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:240987010 original size:15 final size:15
Alignment explanation
Indices: 240986933--240987010 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
240986923 AGAAAACCGA
240986933 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
240986948 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
240986962 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
240986977 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
240986993 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
240987008 ATA
1 ATA
240987011 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:240992323 original size:40 final size:40
Alignment explanation
Indices: 240992286--240992470 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
240992276 GCTACTCGTT
*
240992286 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
240992326 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
240992366 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
240992405 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
240992446 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
240992471 CATCATTCGA
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 35 0.26
40 82 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:240992401 original size:79 final size:82
Alignment explanation
Indices: 240992286--240992470 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 82
240992276 GCTACTCGTT
*
240992286 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
240992349 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
240992366 CAAATGCCTTCGGGACTTA-CCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
240992429 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
240992446 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
240992471 CATCATTCGA
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.61
80 34 0.36
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:241000504 original size:40 final size:40
Alignment explanation
Indices: 241000467--241000651 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
241000457 GCTACTCGTT
*
241000467 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
241000507 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
241000547 CAAATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
241000586 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
241000627 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
241000652 CATCATTCGA
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.02
39 35 0.27
40 82 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:241000578 original size:79 final size:82
Alignment explanation
Indices: 241000467--241000651 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 82
241000457 GCTACTCGTT
*
241000467 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
241000530 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
**
241000547 CAAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
241000610 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
241000627 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
241000652 CATCATTCGA
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
78 3 0.03
79 57 0.60
80 35 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:241013401 original size:16 final size:15
Alignment explanation
Indices: 241013378--241013407 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
241013368 AAGGCATCTT
241013378 AAAAAAAAAGAAAAG
1 AAAAAAAAAGAAAAG
241013393 AAAAGAAAAAGAAAA
1 AAAA-AAAAAGAAAA
241013408 AGAGAGAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGAAAAG
Found at i:241014375 original size:88 final size:82
Alignment explanation
Indices: 241014275--241014443 Score: 239
Period size: 88 Copynumber: 2.0 Consensus size: 82
241014265 ATCTTTCAAA
* *
241014275 AAAATCAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTTACACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGC-GAGGTATTTT-AATTT
*
241014340 CGTTTTTTCAATTTATGCTTTTC
62 --TGTTTTCAATTTATGCTTTTC
*
241014363 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCGAGGTATTTTAATTTTGTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCGAGGTATTTTAATTTTGTT
*
241014428 TTCAATTTTTGCTTTT
66 TTCAATTTATGCTTTT
241014444 AATTTCTTAT
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
82 18 0.24
84 5 0.07
85 10 0.13
86 5 0.07
87 2 0.03
88 36 0.47
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (82 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCGAGGTATTTTAATTTTGTT
TTCAATTTATGCTTTTC
Found at i:241014591 original size:98 final size:99
Alignment explanation
Indices: 241014345--241014717 Score: 435
Period size: 98 Copynumber: 3.9 Consensus size: 99
241014335 AATTTCGTTT
* * * *
241014345 TTTCAATTTATGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC-
1 TTTCAAATTCTGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
241014409 GAGGTATTTT-AATTT-TG-TTTTCAATTTTTGC
66 GAGGTATTTTCAATTTCTGTTTTTCAATTTTTGC
* * ** * *
241014440 TTTTAATTTCTTATTTTTCAAAAATCAACT-ATATTACGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTCAAATTC-TGCTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
241014504 CTGAGGTATTTTCAATTTCTGTTTTTCAATTTTTGC
64 CTGAGGTATTTTCAATTTCTGTTTTTCAATTTTTGC
*
241014540 TTACAAATTCTGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TTTCAAATTCTGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* *
241014604 GAGGTATTTTCAATTTTCT-TTTTTTAATTTATG-
66 GAGGTATTTTCAA-TTTCTGTTTTTCAATTTTTGC
241014637 TTTCTAAA-----------AAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGC
1 TTTC-AAATTCTGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* *
241014690 TGAGGTAATTTCAATTTTTGTTTTTCAA
65 TGAGGTATTTTCAATTTCTGTTTTTCAA
241014718 AACTCATATT
Statistics
Matches: 248, Mismatches: 19, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
86 4 0.02
87 43 0.17
88 21 0.08
95 8 0.03
96 39 0.16
97 32 0.13
98 67 0.27
99 13 0.05
100 21 0.08
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (99 bp):
TTTCAAATTCTGCTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTATTTTCAATTTCTGTTTTTCAATTTTTGC
Found at i:241014938 original size:73 final size:72
Alignment explanation
Indices: 241014644--241015259 Score: 812
Period size: 73 Copynumber: 8.6 Consensus size: 72
241014634 ATGTTTCTAA
* * *
241014644 AAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
241014708 TGTTTTTC
66 TG-TTTTC
* *
241014716 ---AA--AACTCATATTGC-AAAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
*
241014775 TATTTTC
66 TGTTTTC
*
241014782 AAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTC-AGACACGTTGAGGT-ATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
241014844 TG-TTTC
66 TGTTTTC
* * * *
241014850 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
241014915 TGTTTGTC
66 TGTTT-TC
*
241014923 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
*
241014988 TGTCTTTAA
66 TGT-TTT-C
* * *
241014997 AAAAATAAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
241015062 TGTTTTTC
66 TG-TTTTC
* * *
241015070 AAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTGAGGTAATTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATT
*
241015133 TTTGTTTGTC
64 TCTGTTT-TC
*
241015143 AAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
241015207 TGTCTTTC
66 TGT-TTTC
* *
241015215 AAAAAAAATCAGCTCATATTGC-AGAGGTGAGTTGAACCTCAAGAC
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
241015260 GCTGAGGTGT
Statistics
Matches: 487, Mismatches: 32, Indels: 47
0.86 0.06 0.08
Matches are distributed among these distances:
66 7 0.01
67 50 0.10
68 25 0.05
69 30 0.06
70 42 0.09
71 63 0.13
72 30 0.06
73 91 0.19
74 73 0.15
75 76 0.16
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (72 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTTTC
Found at i:241015396 original size:15 final size:14
Alignment explanation
Indices: 241015360--241015392 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
241015350 CGCTGAGGTA
241015360 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
241015374 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
241015388 TTTTC
1 TTTTC
241015393 CAAAAATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:241015464 original size:87 final size:88
Alignment explanation
Indices: 241015196--241015694 Score: 427
Period size: 91 Copynumber: 5.7 Consensus size: 88
241015186 CGTTGAGGTA
* * * * *
241015196 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGC-AGAGGTGAGTTGAACCTCA-AGA
1 TTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACA
* *
241015259 CGCTGAGGTGTTTTCCATTTCTTT
65 CGCTGAGGTATTTTCAATTTCTTT
* * * * * *
241015283 ATTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATAT--GAGTGGTGAGTTGAGCCTTGACT
1 TTTTCAATTTATGTTTTTC-AAAAAAATCAACTCATAT-TGCGAGAGGTGAGTTGAGCC-T--CA
* * *
241015346 CACACGCTGAGGTATTTTCAAATTCTGT
61 GACACGCTGAGGTATTTTCAATTTCTTT
* *
241015374 TTTTCAAATTT-TGTTTTTC-CAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGACA
1 TTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACA
*
241015437 CGCTGAGATA-TTTCAATTTCTTTT
65 CGCTGAGGTATTTTCAATTTC-TTT
*
241015461 TTTTCAATTTATGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---A
* *
241015526 CACGCCGAGGTATTTTCAATTGATTTTT
63 CACGCTGAGGTATTTTCAATT--TCTTT
* * * *
241015554 TTTTCAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG--A
** * **
241015617 CATACCGAGGTATTTTCAAAATC--T
63 CACGCTGAGGTATTTTCAATTTCTTT
* * *
241015641 TTTACAAATTT-TG-TTTT---AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
241015695 TGGCTCACGT
Statistics
Matches: 350, Mismatches: 42, Indels: 42
0.81 0.10 0.10
Matches are distributed among these distances:
85 34 0.10
86 17 0.05
87 84 0.24
88 47 0.13
89 17 0.05
90 16 0.05
91 101 0.29
92 14 0.04
93 19 0.05
94 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (88 bp):
TTTTCAATTTATGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACAC
GCTGAGGTATTTTCAATTTCTTT
Found at i:241015511 original size:178 final size:176
Alignment explanation
Indices: 241015218--241015610 Score: 478
Period size: 178 Copynumber: 2.2 Consensus size: 176
241015208 GTCTTTCAAA
* * * * * *
241015218 AAAAATCAGCTCATATTGC-AGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCATTTCTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGATGATTTCAATTTCTT
* * * *
241015282 TATTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATATGAGTGGTGAGTTGAGCCT-TGACT
66 TATTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATATGAGAGGTGAGTTGAGCCTCAGA-T
* *
241015346 CACACGCTGAGGTATTTTCAA-ATTCTGTTTTTCAAATTT-TGTTTTTCC
130 CACACGCCGAGGTATTTTCAATATT-TGTTTTTC-AATTTATG-CTTTCC
*
241015394 AAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAGACACGCTGAGAT-ATTTCAATTTCT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-ACACGCTGAGATGATTTCAATTTC-
*
241015458 TTTTTTTCAATTTATGT-TTGTC-AAAAAAATCAACTCATAT-TGCGAGAGGTGAGTTGAGCCTC
64 TTTATTTCAATTTATGTGTT-TCAAAAAAAATCAACTCATATAT--GAGAGGTGAGTTGAGCCTC
* *
241015520 AGATCACACGCCGAGGTATTTTCAATTGATTTTTTTTTCAATTTATGCTTTGC
126 AGATCACACGCCGAGGTATTTTCAA-T-ATTTGTTTTTCAATTTATGCTTTCC
*
241015573 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
241015611 GGGTCACATA
Statistics
Matches: 188, Mismatches: 18, Indels: 19
0.84 0.08 0.08
Matches are distributed among these distances:
176 19 0.10
177 45 0.24
178 65 0.35
179 47 0.25
180 9 0.05
181 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (176 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTGAGATGATTTCAATTTCTT
TATTTCAATTTATGTGTTTCAAAAAAAATCAACTCATATATGAGAGGTGAGTTGAGCCTCAGATC
ACACGCCGAGGTATTTTCAATATTTGTTTTTCAATTTATGCTTTCC
Found at i:241015742 original size:85 final size:85
Alignment explanation
Indices: 241015305--241015766 Score: 373
Period size: 91 Copynumber: 5.3 Consensus size: 85
241015295 GTGTTTCAAA
* * * *
241015305 AAAAATCAGCTCATATAT--GAGTGGTGAGTTGAGCCTTGACTCACACGCTGAGGTATTTTCAAA
1 AAAAATCAACTCATAT-TGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTC-AA
* *
241015368 TTCTGTTTTTCAAATTTTGTTTTT
64 TTTTGTTTTTC-AATTTAG-TTTT
* * *
241015392 CCAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCCTCAG---ACACGCTGAGATA-TTTCAA
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAA
*
241015453 TTTCTTTTTTTTCAATTTATGTTTGT
64 -TT-TTGTTTTTCAATTTA-GTTT-T
* * *
241015479 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCA
1 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCA
* *
241015544 ATTGATTTTTTTTTCAATTTATGCTTTGC
63 A-T--TTTGTTTTTCAATTTA-G-TTT-T
* * ** * *
241015573 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATACCGAGGTATTTTCAA-A
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATT
* * * *
241015637 ATCTTTTACAAATTTTGTTTT
66 TTGTTTTTC-AATTTAGTTTT
* * * ** *
241015658 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATT
241015723 TTGTTTTT-AATGTTAGTTTT
66 TTGTTTTTCAAT-TTAGTTTT
* *
241015743 AAAGAGTCAATTCATATTGCGAGA
1 AAA-AATCAACTCATATTGCGAGA
241015767 AATGAGTTAA
Statistics
Matches: 311, Mismatches: 44, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
84 3 0.01
85 66 0.21
86 39 0.13
87 28 0.09
88 45 0.14
89 15 0.05
90 16 0.05
91 69 0.22
92 8 0.03
93 17 0.05
94 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (85 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACACGCTGAGGTATTTTCAATT
TTGTTTTTCAATTTAGTTTT
Found at i:241016442 original size:18 final size:18
Alignment explanation
Indices: 241016419--241016479 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
241016409 CCACCACCAA
241016419 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
* *
241016437 CTCCACCACCGCCACACCT-
1 CTCCACTA--GCCACACTTG
*
241016456 CTCCATTAGCCACACTTG
1 CTCCACTAGCCACACTTG
241016474 CTCCAC
1 CTCCAC
241016480 CACCACTTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 8 0.24
18 12 0.35
19 6 0.18
20 8 0.24
ACGTcount: A:0.21, C:0.51, G:0.08, T:0.20
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:241016485 original size:17 final size:18
Alignment explanation
Indices: 241016428--241016483 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 18
241016418 ACTCCACTAG
241016428 CCACACTTGCTCCACCACC
1 CCACACTTGCTCCACCA-C
* ** *
241016447 GCCACACCT-CTCCATTAG
1 -CCACACTTGCTCCACCAC
241016465 CCACACTTGCTCCACCAC
1 CCACACTTGCTCCACCAC
241016483 C
1 C
241016484 ACTTGTACCT
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 6 0.22
20 7 0.26
ACGTcount: A:0.21, C:0.54, G:0.07, T:0.18
Consensus pattern (18 bp):
CCACACTTGCTCCACCAC
Found at i:241017065 original size:25 final size:25
Alignment explanation
Indices: 241017037--241017095 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
241017027 CTATATTACG
241017037 TATATATA-TT-ATACTAT-TTTAT
1 TATATATATTTAATACTATATTTAT
*
241017059 GTATATATCTTTAATACTATATTTAT
1 -TATATATATTTAATACTATATTTAT
241017085 TATATATATTT
1 TATATATATTT
241017096 TTTTCTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 7 0.23
24 2 0.06
25 17 0.55
26 5 0.16
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (25 bp):
TATATATATTTAATACTATATTTAT
Found at i:241017132 original size:22 final size:23
Alignment explanation
Indices: 241017107--241017173 Score: 82
Period size: 25 Copynumber: 2.9 Consensus size: 23
241017097 TTTCTACATG
*
241017107 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
241017129 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
*
241017154 CTATATTATGTATATATTTT
1 TTATATTATGTATATATTTT
241017174 TTTATATCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
22 11 0.29
23 7 0.18
24 8 0.21
25 12 0.32
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:241017185 original size:25 final size:24
Alignment explanation
Indices: 241016966--241017018 Score: 54
Period size: 24 Copynumber: 2.1 Consensus size: 24
241016956 TTGTTATTAT
*
241016966 TATATTTTTTAATATTATATTATATA
1 TATATTTTTT-ATA-TATATTATGTA
*
241016992 TATATTCTTTTA-ATATATTAGGTA
1 TATATT-TTTTATATATATTATGTA
241017016 TAT
1 TAT
241017019 TCTAAATTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
24 12 0.50
25 1 0.04
26 7 0.29
27 4 0.17
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (24 bp):
TATATTTTTTATATATATTATGTA
Found at i:241019988 original size:48 final size:48
Alignment explanation
Indices: 241019927--241020120 Score: 150
Period size: 48 Copynumber: 4.1 Consensus size: 48
241019917 TATCGGGATA
* *
241019927 TGGCGTTGATATGAGATCCCATGTAAGACCATGTTTGGGACATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
* *
241019975 TGGCATTGATATGAGA-CATCATATAAGACCATAG-CTGGG-CTATCGGC-T
1 TGGCATTGATATGAGATC-CCATATAAGACCAT-GTTTGGGAC-AT-GGCAT
* * * * *
241020023 TCG-A-T-ATGTGCGATCCCATGTAAGACCATGTTTGGGGCATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
** * * *** *
241020068 TGGCATCAATATGTGGTCCCATATAAGACCATACATGGGATATGGCAT
1 TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
241020116 TGGCA
1 TGGCA
241020121 CCTTATTATG
Statistics
Matches: 114, Mismatches: 21, Indels: 22
0.73 0.13 0.14
Matches are distributed among these distances:
44 4 0.04
45 27 0.24
46 4 0.04
47 3 0.03
48 72 0.63
49 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (48 bp):
TGGCATTGATATGAGATCCCATATAAGACCATGTTTGGGACATGGCAT
Found at i:241020002 original size:89 final size:91
Alignment explanation
Indices: 241019848--241020110 Score: 257
Period size: 93 Copynumber: 2.9 Consensus size: 91
241019838 ATTTGGGTTG
* * * * * * ** * ** *
241019848 ATGAGATCCCGTATAAGAGCATATATGGGATATGGCATCAGCATCGATATGTGTTATCATGTAAG
1 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
*
241019913 ACCATATC-GGGATAT-GGCGTT-GAT
66 ACCATAGCTGGGATATCGGC-TTCGAT
*
241019937 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATTGATATGAGACATCATATAAG
1 ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
*
241020002 ACCATAGCTGGGCTATCGGCTTCGAT
66 ACCATAGCTGGGATATCGGCTTCGAT
* * * * * *
241020028 ATGTGCGATCCCATGTAAGACCATGTTTGGGGCATGGCATTGGCATCAATATGTGGTC-CCATAT
1 A--TGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATG-AGACATCATAT
241020092 AAGACCATA-CATGGGATAT
63 AAGACCATAGC-TGGGATAT
241020111 GGCATTGGCA
Statistics
Matches: 144, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
89 59 0.41
90 8 0.06
91 7 0.05
92 1 0.01
93 67 0.47
94 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (91 bp):
ATGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGATATGAGACATCATATAAG
ACCATAGCTGGGATATCGGCTTCGAT
Found at i:241022323 original size:30 final size:30
Alignment explanation
Indices: 241022287--241022417 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
241022277 GACAAGATTG
* * * * *
241022287 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
241022317 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
241022345 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
241022375 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
241022404 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
241022418 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:241022378 original size:58 final size:58
Alignment explanation
Indices: 241022287--241022417 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
241022277 GACAAGATTG
* * * * * *
241022287 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
241022345 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
241022404 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
241022418 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:241030319 original size:27 final size:28
Alignment explanation
Indices: 241030262--241030331 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
241030252 AAATTTGTAC
**
241030262 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
241030290 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
241030317 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
241030332 GACTATTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:241044206 original size:71 final size:72
Alignment explanation
Indices: 241044068--241044231 Score: 314
Period size: 71 Copynumber: 2.3 Consensus size: 72
241044058 GAGATGTATC
241044068 CCATGTAGAC-AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTTCCAAGTG
241044132 AAGGACA
66 AAGGACA
241044139 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGA-TTCCAAGTG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTTCCAAGTG
241044203 AAGGACA
66 AAGGACA
241044210 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
241044232 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
71 48 0.52
72 44 0.48
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.20
Consensus pattern (72 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTTCCAAGTG
AAGGACA
Found at i:241047381 original size:2 final size:2
Alignment explanation
Indices: 241047374--241047429 Score: 98
Period size: 2 Copynumber: 29.0 Consensus size: 2
241047364 CAAAACTTTA
241047374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
241047416 AT AT -T AT AT A- AT AT
1 AT AT AT AT AT AT AT AT
241047430 TAAAGTTAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
1 2 0.04
2 50 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:241050749 original size:44 final size:43
Alignment explanation
Indices: 241050695--241050884 Score: 124
Period size: 41 Copynumber: 4.5 Consensus size: 43
241050685 ACCTATTACC
241050695 CTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGTTTAAGGTTCTTC-TCTTCGATCTGCTCCA
* * * ** * * *
241050739 CTACTGCTTAGGGAG-ATAA-GATCTGCAATT-AACCTGTTACC-
1 CTACTGCTTAGGG-GTTTAAGGTTCTTCTCTTCGATCTGCT-CCA
* * *
241050780 CTACTGCTTAGGGGTTTAAGGTTATTCTTCTTCGATCTACACCA
1 CTACTGCTTAGGGGTTTAAGGTTCTTC-TCTTCGATCTGCTCCA
* * * ** * *
241050824 CTACTGCTTAGGGG-ATAA-GATCTACAATTTGATCTGTTTCC-
1 CTACTGCTTAGGGGTTTAAGGTTCTTCTCTTCGATCTG-CTCCA
241050865 CTACTGCTTAGGGGTTTAAG
1 CTACTGCTTAGGGGTTTAAG
241050885 ATCCTATGAA
Statistics
Matches: 106, Mismatches: 30, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
40 1 0.01
41 42 0.40
42 17 0.16
43 12 0.11
44 33 0.31
45 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (43 bp):
CTACTGCTTAGGGGTTTAAGGTTCTTCTCTTCGATCTGCTCCA
Found at i:241050794 original size:85 final size:84
Alignment explanation
Indices: 241050600--241050884 Score: 322
Period size: 85 Copynumber: 3.3 Consensus size: 84
241050590 TAATTTTCAG
* * * * *
241050600 CCTGTTACCCTACTGCTTAAGGGATTAAGGCTTGTCATCTTTGATCTGTTTCC-CTACTGCTTAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTTTCATCTTCGATCTG-CTCCACTACTGCTTAG
** * * *
241050664 GGTTTTAGATCTGTATACTCAA
64 GGGATAAGATCTGCA-ACTTAA
* *
241050686 CCTATTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTT-TTCATCTTCGATCTGCTCCACTACTGCTTAGG
241050751 GAGATAAGATCTGCAA-TTAA
65 G-GATAAGATCTGCAACTTAA
* * *
241050771 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTATTCTTCTTCGATCTACACCACTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGGTT-TTCATCTTCGATCTGCTCCACTACTGCTTAGG
* * *
241050836 GGATAAGATCTACAATTTGA
65 GGATAAGATCTGCAACTTAA
* *
241050856 TCTGTTTCCCTACTGCTTAGGGGTTTAAG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAG
241050885 ATCCTATGAA
Statistics
Matches: 174, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
84 13 0.07
85 99 0.57
86 53 0.30
87 9 0.05
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (84 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTTCATCTTCGATCTGCTCCACTACTGCTTAGGG
GATAAGATCTGCAACTTAA
Found at i:241051173 original size:178 final size:179
Alignment explanation
Indices: 241050964--241051432 Score: 838
Period size: 178 Copynumber: 2.6 Consensus size: 179
241050954 CTGCATTCGA
* *
241050964 GGAG-CAAGATCTGTAATTTTCAACTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
1 GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
241051028 CGATCTGTTT-CCTACTGCTTAGGGGATTAAGATCTATAAATCTTCAATCTGCTTCACTGCAACT
66 CGATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATAAATCTTCAATCTGCTTCACTGCAACT
241051092 TCAGGAAGACAAAATTCGCTGGATTCGATTTGTTCCACTGCAACTTCAG
131 TCAGGAAGACAAAATTCGCTGGATTCGATTTGTTCCACTGCAACTTCAG
241051141 GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTA-GGGGTTAAAGCTCATTATCTT
1 GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
241051205 CGATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATAAATCTTCAATCTGCTTCACTGCAACT
66 CGATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATAAATCTTCAATCTGCTTCACTGCAACT
*
241051270 TCAGGAAGACAAGATTCGCTGGATTCGATTTGTTCCACTGCAACTTCAG
131 TCAGGAAGACAAAATTCGCTGGATTCGATTTGTTCCACTGCAACTTCAG
241051319 GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
1 GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
* *
241051384 CTTTGATCTGTTTCCCTACTGCTTAGGGG-TTAAGATTTGTAAATCTTCA
66 C---GATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATAAATCTTCA
241051433 GCCTGCTACC
Statistics
Matches: 281, Mismatches: 5, Indels: 8
0.96 0.02 0.03
Matches are distributed among these distances:
177 35 0.12
178 181 0.64
179 22 0.08
181 18 0.06
182 25 0.09
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (179 bp):
GGAGACAAAATCTGTAATTTTCAGCTTATTACCCTACTACTTAGGGGGTTAAAGCTCATTATCTT
CGATCTGTTTCCCTACTGCTTAGGGGATTAAGATCTATAAATCTTCAATCTGCTTCACTGCAACT
TCAGGAAGACAAAATTCGCTGGATTCGATTTGTTCCACTGCAACTTCAG
Found at i:241055874 original size:118 final size:118
Alignment explanation
Indices: 241055666--241055903 Score: 476
Period size: 118 Copynumber: 2.0 Consensus size: 118
241055656 AATCACTGTC
241055666 ATCTCCAAAATCCTCGGATCCCTCTAGACACATATCGCGCTCAAAGGGAGACTCCGAATTAATAG
1 ATCTCCAAAATCCTCGGATCCCTCTAGACACATATCGCGCTCAAAGGGAGACTCCGAATTAATAG
241055731 CAAGGTCACTCACATCGTTGATATCTGGAGACCTGTTTTGGGCAGAAAGGAAG
66 CAAGGTCACTCACATCGTTGATATCTGGAGACCTGTTTTGGGCAGAAAGGAAG
241055784 ATCTCCAAAATCCTCGGATCCCTCTAGACACATATCGCGCTCAAAGGGAGACTCCGAATTAATAG
1 ATCTCCAAAATCCTCGGATCCCTCTAGACACATATCGCGCTCAAAGGGAGACTCCGAATTAATAG
241055849 CAAGGTCACTCACATCGTTGATATCTGGAGACCTGTTTTGGGCAGAAAGGAAG
66 CAAGGTCACTCACATCGTTGATATCTGGAGACCTGTTTTGGGCAGAAAGGAAG
241055902 AT
1 AT
241055904 GCAAAGAACA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 120 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (118 bp):
ATCTCCAAAATCCTCGGATCCCTCTAGACACATATCGCGCTCAAAGGGAGACTCCGAATTAATAG
CAAGGTCACTCACATCGTTGATATCTGGAGACCTGTTTTGGGCAGAAAGGAAG
Found at i:241061967 original size:27 final size:28
Alignment explanation
Indices: 241061937--241062006 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
241061927 ATAATAAGTC
*
241061937 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
241061964 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
241061992 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
241062007 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:241070025 original size:27 final size:28
Alignment explanation
Indices: 241069995--241070064 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
241069985 ATAATAAGTC
*
241069995 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
241070022 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
241070050 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
241070065 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:241075034 original size:68 final size:70
Alignment explanation
Indices: 241074962--241075158 Score: 301
Period size: 70 Copynumber: 2.8 Consensus size: 70
241074952 ACACCCTGTA
* * * *
241074962 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
241075024 ATAAAT
65 ATAAAT
*
241075030 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
241075095 TAAAT
66 TAAAT
*
241075100 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
241075159 AGACAAATCG
Statistics
Matches: 120, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 4 0.03
70 66 0.55
71 26 0.22
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:241075061 original size:40 final size:40
Alignment explanation
Indices: 241075017--241075131 Score: 92
Period size: 40 Copynumber: 3.1 Consensus size: 40
241075007 AGAGAGCTAC
241075017 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
* * * *
241075057 GTG-AAGACACCATGTAGAC-AAG-AG-A-GC-T-A---C--
1 GTGAAAGATA-AATGTAG-CTAGGTCGCATGCGTGATTCCAA
241075087 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
1 GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
241075127 GTGAA
1 GTGAA
241075132 GGACACCATG
Statistics
Matches: 53, Mismatches: 8, Indels: 28
0.60 0.09 0.31
Matches are distributed among these distances:
29 1 0.02
30 11 0.21
31 6 0.11
32 2 0.04
33 2 0.04
34 1 0.02
35 2 0.04
36 1 0.02
37 2 0.04
38 2 0.04
39 6 0.11
40 16 0.30
41 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (40 bp):
GTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAA
Found at i:241075086 original size:70 final size:71
Alignment explanation
Indices: 241074996--241075158 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
241074986 GAGATGTATC
241074996 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
241075061 A-GACA
66 AGGACA
241075066 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
241075131 AGGACA
66 AGGACA
241075137 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
241075159 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 66 0.72
71 26 0.28
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:241082596 original size:68 final size:70
Alignment explanation
Indices: 241082524--241082721 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
241082514 ACACCCTGTA
* * * *
241082524 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
241082586 ATAAAT
65 ATAAAT
*
241082592 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
241082657 ATAAAT
65 ATAAAT
*
241082663 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
241082722 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:241082635 original size:41 final size:41
Alignment explanation
Indices: 241082590--241082707 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
241082580 TGAAAGATAA
241082590 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
241082631 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
241082661 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
241082702 ATGTAG
1 ATGTAG
241082708 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:241082647 original size:71 final size:71
Alignment explanation
Indices: 241082558--241082721 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
241082548 GAGATGTATC
241082558 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
241082623 AGGACA
66 AGGACA
241082629 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
241082694 AGGACA
66 AGGACA
241082700 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
241082722 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:241099984 original size:2 final size:2
Alignment explanation
Indices: 241099977--241100009 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
241099967 TAATACATAC
241099977 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
241100010 AAAGAATATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:241101049 original size:13 final size:13
Alignment explanation
Indices: 241101031--241101059 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
241101021 TCCATTTTTG
241101031 TAGGAGTTCAACC
1 TAGGAGTTCAACC
241101044 TAGGAGTTCAACC
1 TAGGAGTTCAACC
241101057 TAG
1 TAG
241101060 CTTGCGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (13 bp):
TAGGAGTTCAACC
Found at i:241103818 original size:40 final size:40
Alignment explanation
Indices: 241103716--241103899 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
241103706 AAATTGAATG
* * * * *
241103716 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
241103756 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
241103796 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
241103836 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
241103876 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
241103900 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:241105423 original size:41 final size:40
Alignment explanation
Indices: 241105346--241105440 Score: 109
Period size: 41 Copynumber: 2.4 Consensus size: 40
241105336 ATTGGTATCA
* * *
241105346 TAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGC
1 TAAGACCCGAAGGCATTCGTGCAAATCGTGAAATCCGGGC
* * *
241105386 TAAGACCCGAAGGCATTTTGTGCAAATCGTGATATCCGGGT
1 TAAGACCCGAAGGCA-TTCGTGCAAATCGTGAAATCCGGGC
* *
241105427 TAAGTCCCGTAGGC
1 TAAGACCCGAAGGC
241105441 CTTGGTGCGG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 15 0.33
41 31 0.67
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TAAGACCCGAAGGCATTCGTGCAAATCGTGAAATCCGGGC
Found at i:241113423 original size:40 final size:40
Alignment explanation
Indices: 241113331--241113512 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
241113321 AAATTGAATG
* * * *
241113331 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
241113369 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
241113409 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
241113449 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
241113489 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
241113513 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
38 13 0.11
39 19 0.16
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:241117756 original size:27 final size:28
Alignment explanation
Indices: 241117699--241117768 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
241117689 AAATTTGTAC
**
241117699 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
241117727 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
241117754 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
241117769 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:241117777 original size:27 final size:27
Alignment explanation
Indices: 241117699--241117780 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
241117689 AAATTTGTAC
* *
241117699 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
241117727 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
241117754 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
241117781 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:241125804 original size:27 final size:28
Alignment explanation
Indices: 241125747--241125816 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
241125737 AAATTTGTAC
**
241125747 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
241125775 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
241125802 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
241125817 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:241125825 original size:27 final size:27
Alignment explanation
Indices: 241125747--241125828 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
241125737 AAATTTGTAC
* *
241125747 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
241125775 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
241125802 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
241125829 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:241131542 original size:38 final size:38
Alignment explanation
Indices: 241131438--241131612 Score: 167
Period size: 38 Copynumber: 4.6 Consensus size: 38
241131428 TACTCGTTCA
* **
241131438 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGG-CTTAGCCCGAATATAGTAACTCGCAC
* * * *
241131477 AATGCCTTCGGACTTA-ACCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCA-C
241131515 AATGCCTTCGGGCTTAGCCCGAAT-TAGTAACTCGCA-
1 AATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCAC
* * * * *
241131551 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGG-GCTTAGCCCGAATATAGTAAC-TCGCAC
*
241131591 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGG-CTTAGCCCG
241131613 GACATCATTC
Statistics
Matches: 113, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
36 11 0.10
37 27 0.24
38 37 0.33
39 20 0.18
40 18 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (38 bp):
AATGCCTTCGGGCTTAGCCCGAATATAGTAACTCGCAC
Found at i:241131598 original size:76 final size:77
Alignment explanation
Indices: 241131404--241131612 Score: 223
Period size: 77 Copynumber: 2.7 Consensus size: 77
241131394 GAATCACGTA
* * ** * **
241131404 CCTTCGGAATTAACCGGATATAGCT-ACTCG-TTCAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGACTTAACCGGATATAG-TAACTAGCACCAAA-GCCTTCGGGACTTAGCCCGAATATAG
241131467 TAACTCGCACAATG
64 TAACTCGCACAATG
* * *
241131481 CCTTCGGACTTAACCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAAT-TAGTA
1 CCTTCGGACTTAACCGGATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGAATATAGTA
241131544 ACTCGCA-AATG
66 ACTCGCACAATG
* *
241131555 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCG
1 CCTTCGGA-CTTA-ACCGGATATAGTAAC-TAGCACCAAAGCCTTCGGGACTTAGCCCG
241131613 GACATCATTC
Statistics
Matches: 113, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
74 12 0.11
75 16 0.14
76 34 0.30
77 48 0.42
78 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (77 bp):
CCTTCGGACTTAACCGGATATAGTAACTAGCACCAAAGCCTTCGGGACTTAGCCCGAATATAGTA
ACTCGCACAATG
Found at i:241132660 original size:25 final size:25
Alignment explanation
Indices: 241132632--241132682 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
241132622 CGAATACCAT
241132632 CTCCATGACATAGCAAAGATTTGAA
1 CTCCATGACATAGCAAAGATTTGAA
241132657 CTCCATGACATAGCAAAGATTTGAA
1 CTCCATGACATAGCAAAGATTTGAA
241132682 C
1 C
241132683 CATGGGCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.24
Consensus pattern (25 bp):
CTCCATGACATAGCAAAGATTTGAA
Found at i:241139179 original size:33 final size:33
Alignment explanation
Indices: 241139137--241139200 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
241139127 ATATACATAT
241139137 TCTCAAATCATTCCTACTTCACATTCCAACCTA
1 TCTCAAATCATTCCTACTTCACATTCCAACCTA
241139170 TCTCAAATCATTCCTACTTCACATTCCAACC
1 TCTCAAATCATTCCTACTTCACATTCCAACC
241139201 CCTATATTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.38, G:0.00, T:0.33
Consensus pattern (33 bp):
TCTCAAATCATTCCTACTTCACATTCCAACCTA
Found at i:241139575 original size:70 final size:78
Alignment explanation
Indices: 241139415--241139630 Score: 254
Period size: 70 Copynumber: 2.8 Consensus size: 78
241139405 GCTACTCGTT
*
241139415 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAG-CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGG
241139480 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
*
241139495 CAAATGCCTTCGGG-CTTAG-CGGAT-TAGTAACTCGCACAAATGCCTTC-G-CTT-A-CCGGA-
1 CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
241139552 TTAGTAACTCGCA
66 TTAGTAACTCGCA
* * * *
241139565 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAG-CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
241139628 GGA
62 GGA
241139631 CATCATTCGA
Statistics
Matches: 120, Mismatches: 5, Indels: 23
0.81 0.03 0.16
Matches are distributed among these distances:
69 2 0.02
70 24 0.20
71 10 0.08
72 1 0.01
73 8 0.07
74 13 0.11
75 8 0.07
76 24 0.20
77 7 0.06
79 9 0.08
80 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:241139630 original size:40 final size:39
Alignment explanation
Indices: 241139415--241139630 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
241139405 GCTACTCGTT
* *
241139415 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
*
241139455 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
241139495 CAAATGCCTTCGGG-CTTAG--CGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
241139531 CAAATGCCTTC--G-CTTA--CCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
* * *
241139565 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
241139606 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
241139631 CATCATTCGA
Statistics
Matches: 159, Mismatches: 7, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
34 33 0.21
35 1 0.01
36 24 0.15
37 8 0.05
39 10 0.06
40 71 0.45
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Done.