Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 763 of 770
Found at i:242255792 original size:43 final size:42
Alignment explanation
Indices: 242255745--242256429 Score: 705
Period size: 42 Copynumber: 16.5 Consensus size: 42
242255735 CCCTGCTGCT
* * * *
242255745 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
242255788 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
* *
242255830 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCC
* **
242255873 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** * *
242255916 CGAGGCT-CCGCAC-ATCCAAGCACCAAAGTGCCGATGGTG-C
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
*
242255956 CGAGGCT-CCGCACGACC-AGGCGGCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGG-TGCCGATGGTGCC
* *
242255998 CGAGGCTCCCGCAC-ATCAAGGG-CTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
242256038 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT--C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
*
242256078 CGAGGCTCTCGCACGACCAA-GGCCTAGGTTGCCGA--GTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
*
242256118 CGAGGCT-CCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCC
** *
242256159 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCC
242256201 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGG-G-C
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* *
242256241 CGAGGCTCTCGCCACGACCAAGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCG-CACGACCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
242256285 CGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
242256327 CGAGGCTCCCGCACGACC-AGGCGCCTAGGTTGCCGATGGTG-C
1 CGAGGCTCCCGCACGACCAAGG-GCCTAGG-TGCCGATGGTGCC
* * *
242256369 CGAGGCTCCCGCACGA-CAAGGGCCTAGGTTCCGATGGCGTC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
* * *
242256410 CAAGGCTCCAGCACGTCCAA
1 CGAGGCTCCCGCACGACCAA
242256430 AGCAGCAATG
Statistics
Matches: 553, Mismatches: 58, Indels: 63
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.00
39 20 0.04
40 113 0.20
41 99 0.18
42 193 0.35
43 117 0.21
44 9 0.02
ACGTcount: A:0.19, C:0.34, G:0.33, T:0.14
Consensus pattern (42 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:242256004 original size:168 final size:168
Alignment explanation
Indices: 242255771--242256447 Score: 795
Period size: 168 Copynumber: 4.1 Consensus size: 168
242255761 CCAACGTCCT
* * ** * * * *
242255771 AGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCGAGG
1 AGGTTGCCGATGGTGCCCGAGGCT-CCGCACGA-CCAGGGGCCTAGGTGCCGATGGTGCCCGAGG
*
242255835 CTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGA
64 CTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
*
242255900 GGTTGCCGATGGTGTTCGAGGCTC-CGCAC-ATCCAAGCACCA
129 GG-TGCCGATGG-GTCCGAGGCTCTCGCACGA-CCAAGCACCA
*
242255941 AAG-TGCCGATGGTG-CCGAGGCTCCGCACGACCAGGCGG-CTAGGTTGCCGATGGTGCCCGAGG
1 AGGTTGCCGATGGTGCCCGAGGCTCCGCACGACCAGG-GGCCTAGG-TGCCGATGGTGCCCGAGG
* * *
242256003 CTCCCGCACAT-CAAGG--GCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTA
64 CTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
* *
242256065 GGTGCCGAT-GGTCCGAGGCTCTCGCACGACCAAG-GCCT
129 GGTGCCGATGGGTCCGAGGCTCTCGCACGACCAAGCACCA
242256103 AGGTTGCCGA--GTGCCCGAGGCTCCGCACGACCAGGGGCCTAGGTTGCCGATGGT-CCCGAGGC
1 AGGTTGCCGATGGTGCCCGAGGCTCCGCACGACCAGGGGCCTAGG-TGCCGATGGTGCCCGAGGC
242256165 TCCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
65 TCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG
** *
242256229 GTGCCGATGGG-CCGAGGCTCTCGCCACGACCAAGGGCCT
130 GTGCCGATGGGTCCGAGGCTCTCG-CACGACCAAGCACCA
* * * *
242256268 AGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGC
1 AGGTTGCCGATGGTGCCCGAGGCTCC-GCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGC
* *
242256333 TCCCGCACGA-CC-AGGCGCCTAGGTTGCCGATGGTG-CCGAGGCTCCCGCACGA-CAAGGGCCT
65 TCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCT
* * * *
242256394 AGGTTCCGATGGCGTCCAAGGCTC-CAGCACGTCCAAAGCAGCA
128 AGGTGCCGATGG-GTCCGAGGCTCTC-GCACGACC-AAGCACCA
*
242256437 ATG-TGCCGATG
1 AGGTTGCCGATG
242256448 CTCCCGTACC
Statistics
Matches: 449, Mismatches: 33, Indels: 52
0.84 0.06 0.10
Matches are distributed among these distances:
161 24 0.05
162 54 0.12
163 81 0.18
164 20 0.04
165 58 0.13
167 62 0.14
168 110 0.24
169 38 0.08
170 2 0.00
ACGTcount: A:0.19, C:0.34, G:0.33, T:0.14
Consensus pattern (168 bp):
AGGTTGCCGATGGTGCCCGAGGCTCCGCACGACCAGGGGCCTAGGTGCCGATGGTGCCCGAGGCT
CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG
TGCCGATGGGTCCGAGGCTCTCGCACGACCAAGCACCA
Found at i:242256646 original size:24 final size:24
Alignment explanation
Indices: 242256614--242256680 Score: 116
Period size: 24 Copynumber: 2.8 Consensus size: 24
242256604 GTTTTCTATT
242256614 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
242256638 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCGCCGGAGCACCG
* *
242256662 CCGGGATAGATCGCCGGAG
1 CCGGGATGGCTCGCCGGAG
242256681 NNNNNNNNNN
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.15, C:0.34, G:0.42, T:0.09
Consensus pattern (24 bp):
CCGGGATGGCTCGCCGGAGCACCG
Found at i:242259302 original size:79 final size:79
Alignment explanation
Indices: 242259141--242259343 Score: 216
Period size: 79 Copynumber: 2.6 Consensus size: 79
242259131 CGGAATACAA
* * * *
242259141 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGACTTGCACAAATGC
1 CCGGATATAACCACTTGCATGAATGCCTTCGGGTATTAGCCCGGATAGAAGACTAGCACAAATGC
*
242259206 CTTCGGGTATTAGC
66 CTTCGGGTATTAAC
* **
242259220 CCGGATTTAA-CACTTGCATGAATGCCTTCGGGTATTAGCCCGGAT-GTGGTCACTAGCAC-AAT
1 CCGGATATAACCACTTGCATGAATGCCTTCGGGTATTAGCCCGGATAGAAG--ACTAGCACAAAT
*
242259282 GGCCTTCGGGTCTTAAC
64 -GCCTTCGGGTATTAAC
** * * *
242259299 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCCGGA
1 CCGGATATAACCACTTGCATGAATGCCTTCGGGTA-TTAGCCCGGA
242259344 ATCATTCAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
77 2 0.02
78 35 0.33
79 40 0.38
80 28 0.27
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACTTGCATGAATGCCTTCGGGTATTAGCCCGGATAGAAGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:242259315 original size:40 final size:38
Alignment explanation
Indices: 242259141--242259343 Score: 174
Period size: 39 Copynumber: 5.1 Consensus size: 38
242259131 CGGAATACAA
242259141 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCAC-AATGCCTTCGGGTCTTAGC
* * * *
242259181 CCGGATAGAAGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACACTAGCAC-AATGCCTTCGGGTCTTAGC
* * * *
242259220 CCGGATTTAACACTTGCATGAATGCCTTCGGGTATTAGC
1 CCGGATATAACACTAGCA-CAATGCCTTCGGGTCTTAGC
* ** *
242259259 CCGGATGTGGTCACTAGCACAATGGCCTTCGGGTCTTAAC
1 CCGGATAT-AACACTAGCACAAT-GCCTTCGGGTCTTAGC
* * * *
242259299 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCA-CAATGCCTTCGGGTCTTAGC
242259339 CCGGA
1 CCGGA
242259344 ATCATTCAAT
Statistics
Matches: 133, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
39 68 0.51
40 62 0.47
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (38 bp):
CCGGATATAACACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:242261908 original size:45 final size:45
Alignment explanation
Indices: 242261858--242261948 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
242261848 GATAGAATAG
242261858 GCACCCCATGTAATCTCACAATCTGAGAAACGTACAATTCGGCTA
1 GCACCCCATGTAATCTCACAATCTGAGAAACGTACAATTCGGCTA
*
242261903 GCACCCCGTGTAATCTCACAATCTGAGAAACGTACAATTCGGCTA
1 GCACCCCATGTAATCTCACAATCTGAGAAACGTACAATTCGGCTA
242261948 G
1 G
242261949 TTTGTCCATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
GCACCCCATGTAATCTCACAATCTGAGAAACGTACAATTCGGCTA
Found at i:242267168 original size:40 final size:40
Alignment explanation
Indices: 242267109--242267234 Score: 180
Period size: 40 Copynumber: 3.1 Consensus size: 40
242267099 CGGAATACAA
* * * *
242267109 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
* * *
242267149 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
*
242267189 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
242267229 CCGGAT
1 CCGGAT
242267235 GTGGTCACTA
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
Found at i:242267257 original size:40 final size:40
Alignment explanation
Indices: 242267125--242267314 Score: 147
Period size: 40 Copynumber: 4.8 Consensus size: 40
242267115 ATAACCACAT
* * * * * *
242267125 GCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATTGAACAACTA
* *
242267165 GCACAAATGCCTTCGGGTATTAGCCCGGATTTAACAACTT
1 GCACAAATGCCTTCGGGTATTAGCCCGGATTGAACAACTA
* **
242267205 GCACGAATGCCTTCGGGTATTAGCCCGGATGTGGTC-ACTA
1 GCACAAATGCCTTCGGGTATTAGCCCGGAT-TGAACAACTA
* * **
242267245 GCAC-AATGGCCTTTC-GGTCTTAACCCGGATAT-AATTACTA
1 GCACAAAT-GCC-TTCGGGTATTAGCCCGGAT-TGAACAACTA
* *
242267285 GCATAAATGTCTTCGGG-ACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTA-TTAGCCCGGAT
242267315 ATCATTCAAT
Statistics
Matches: 122, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
39 6 0.05
40 108 0.89
41 8 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTATTAGCCCGGATTGAACAACTA
Found at i:242267257 original size:80 final size:80
Alignment explanation
Indices: 242267109--242267315 Score: 197
Period size: 80 Copynumber: 2.6 Consensus size: 80
242267099 CGGAATACAA
* * * * *
242267109 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATAGAACGACTAGCACAAATG
*
242267174 CC-TTCGGGTATTAGC
66 CCTTTC-GGTATTAAC
* * **
242267189 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATGTGGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGAT-AGAACGACTAGCACAAAT
*
242267252 GGCCTTTCGGTCTTAAC
65 -GCCTTTCGGTATTAAC
** * ** *
242267269 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTA-TTAGCCCGGATA
242267316 TCATTCAATT
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
79 4 0.04
80 95 0.91
81 5 0.05
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATAGAACGACTAGCACAAATG
CCTTTCGGTATTAAC
Found at i:242271384 original size:40 final size:40
Alignment explanation
Indices: 242271339--242271505 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242271329 CGGAATATAA
242271339 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242271379 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
242271419 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242271459 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242271498 CCGGATAT
1 CCGGATAT
242271506 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242279319 original size:40 final size:39
Alignment explanation
Indices: 242279264--242279374 Score: 125
Period size: 39 Copynumber: 2.8 Consensus size: 39
242279254 ATAATCACGT
* *
242279264 GCACAAATGCTCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGC-CTTCGGGTCTTAGCCCGGATAGAACAACTA
* * *
242279305 GCACGAATGCCTTCGGGTCTTAG-CCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
*
242279344 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
242279375 TAATTTCCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.03
39 30 0.49
40 20 0.33
41 9 0.15
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
Found at i:242279355 original size:39 final size:38
Alignment explanation
Indices: 242279248--242279377 Score: 120
Period size: 39 Copynumber: 3.3 Consensus size: 38
242279238 CGGAATATAA
242279248 CCGGATATAATC-ACGT-GCACAAATGCTCTTCGGGTCTTAG
1 CCGGATATAA-CAAC-TAGCAC-AATGC-CTTCGGGTCTTAG
* * *
242279288 CCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAG
1 -CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAG
* * *
242279328 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTT-AG
242279368 CCGGATATAA
1 CCGGATATAA
242279378 TTTCCAACAT
Statistics
Matches: 75, Mismatches: 10, Indels: 9
0.80 0.11 0.10
Matches are distributed among these distances:
38 2 0.03
39 29 0.39
40 24 0.32
41 20 0.27
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (38 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAG
Found at i:242284005 original size:39 final size:39
Alignment explanation
Indices: 242283951--242284113 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
242283941 TGTGAATGAA
242283951 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
242283990 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
242284029 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
242284068 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
242284108 TGTGCG
1 TGTGCG
242284114 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:242284129 original size:40 final size:39
Alignment explanation
Indices: 242283951--242284143 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
242283941 TGTGAATGAA
* *
242283951 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
242283990 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
242284029 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
242284068 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
242284108 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
242284144 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:242287731 original size:37 final size:37
Alignment explanation
Indices: 242287681--242287755 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
242287671 CATAGGCTGT
242287681 GCATCGACTATCGTCAGCTTAATAAAGCGACGATAAA
1 GCATCGACTATCGTCAGCTTAATAAAGCGACGATAAA
242287718 GCATCGACTATCGTCAGCTTAATAAAGCGACGATAAA
1 GCATCGACTATCGTCAGCTTAATAAAGCGACGATAAA
242287755 G
1 G
242287756 AACAAATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.21
Consensus pattern (37 bp):
GCATCGACTATCGTCAGCTTAATAAAGCGACGATAAA
Found at i:242292047 original size:78 final size:79
Alignment explanation
Indices: 242291917--242292061 Score: 204
Period size: 79 Copynumber: 1.8 Consensus size: 79
242291907 AATGTGCAAA
**
242291917 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAA
1 TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATATCCGGGCTAAGTCCCGAA
242291981 GGCAATTGTGCGAG
66 GGCAATTGTGCGAG
* * * * *
242291995 TTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATA-CCGGGCTATGTCCCGA
1 TTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATATCCGGGCTAAGTCCCGA
242292059 AGG
65 AGG
242292062 TGTTTTGAAC
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
78 27 0.47
79 31 0.53
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (79 bp):
TTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATATCCGGGCTAAGTCCCGAA
GGCAATTGTGCGAG
Found at i:242292058 original size:39 final size:39
Alignment explanation
Indices: 242291920--242292061 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
242291910 GTGCAAATTG
*
242291920 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
242291959 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
242291998 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** *
242292038 CCATA-CCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
242292062 TGTTTTGAAC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 69 0.75
40 23 0.25
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:242299019 original size:39 final size:39
Alignment explanation
Indices: 242298965--242299108 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
242298955 GAATGTTCGA
242298965 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
242299004 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
242299043 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
242299082 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
242299109 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:242299055 original size:78 final size:79
Alignment explanation
Indices: 242298966--242299146 Score: 265
Period size: 78 Copynumber: 2.3 Consensus size: 79
242298956 AATGTTCGAG
242298966 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
242299030 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
242299044 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
242299109 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
242299123 CCATAACCGGGCTATGTCCCGAAG
1 TGATATCCGGGCTAAG-CCCGAAG
242299147 CGTTTGAACG
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
78 53 0.58
79 32 0.35
80 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:242303874 original size:26 final size:26
Alignment explanation
Indices: 242303840--242303895 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
242303830 TATTTCCTAA
242303840 AAAGTTCTTGATTCTCTCACAGTTCT
1 AAAGTTCTTGATTCTCTCACAGTTCT
242303866 AAAGTTCTTGATTCTCTCACAGTTCT
1 AAAGTTCTTGATTCTCTCACAGTTCT
242303892 AAAG
1 AAAG
242303896 AGCTCCTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39
Consensus pattern (26 bp):
AAAGTTCTTGATTCTCTCACAGTTCT
Found at i:242308534 original size:40 final size:40
Alignment explanation
Indices: 242308475--242308660 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
242308465 CATTGGAATG
* * * *
242308475 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
242308515 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
242308555 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
242308595 AAATCCGGGTTAAGACCC-AAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
242308634 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
242308661 CGAGCGAGTC
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
39 30 0.25
40 88 0.73
41 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:242308577 original size:80 final size:79
Alignment explanation
Indices: 242308475--242308627 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
242308465 CATTGGAATG
* * ** *
242308475 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCC-AAGGCA
*
242308540 TTCGTGCGAGTTGTT
65 ATCGTGCGAGTTGTT
* * * *
242308555 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCAAGGCAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCAAGGCAA
242308620 TCGTGCGA
66 TCGTGCGA
242308628 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 14 0.22
80 49 0.78
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCAAGGCAA
TCGTGCGAGTTGTT
Found at i:242308653 original size:79 final size:80
Alignment explanation
Indices: 242308479--242308660 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
242308469 GGAATGATAT
* ** * *
242308479 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
242308544 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
242308559 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCC-AAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
242308623 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
242308638 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
242308661 CGAGCGAGTC
Statistics
Matches: 83, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 38 0.46
80 45 0.54
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:242316564 original size:40 final size:40
Alignment explanation
Indices: 242316505--242316691 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
242316495 CATTGGAATG
* * * *
242316505 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
242316545 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
242316585 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
242316625 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
242316665 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
242316692 CGAGCGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:242316607 original size:80 final size:80
Alignment explanation
Indices: 242316505--242316658 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
242316495 CATTGGAATG
* * ** *
242316505 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
242316570 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
242316585 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
242316650 ATCGTGCGA
66 ATCGTGCGA
242316659 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:242316673 original size:80 final size:80
Alignment explanation
Indices: 242316509--242316691 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
242316499 GGAATGATAT
* ** * *
242316509 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
242316574 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
242316589 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
242316654 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
242316669 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
242316692 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:242316711 original size:80 final size:80
Alignment explanation
Indices: 242316509--242316726 Score: 181
Period size: 80 Copynumber: 2.7 Consensus size: 80
242316499 GGAATGATAT
* * * * * * * *
242316509 CCGGGCTAAGTCCCGAAGGCAAT-TATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGACAATCGA-GCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATC
* *** *
242316573 GTGCGAGTTGTTATAT
65 GTGCGAATCACTATAA
* * * * * * *
242316589 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
242316654 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * *
242316669 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGA-CCCGAAGG
242316727 TACGTGATTC
Statistics
Matches: 109, Mismatches: 27, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
78 1 0.01
79 14 0.13
80 94 0.86
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGACAATCGAGCAAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:242320726 original size:29 final size:29
Alignment explanation
Indices: 242320691--242320758 Score: 127
Period size: 29 Copynumber: 2.3 Consensus size: 29
242320681 TTTAAACGCG
242320691 CACTTAGTGCCATGCATTTCAAGCTCGCA
1 CACTTAGTGCCATGCATTTCAAGCTCGCA
242320720 CACTTAGTGCCATGCATTTCAAGCTCGCA
1 CACTTAGTGCCATGCATTTCAAGCTCGCA
*
242320749 CACTCAGTGC
1 CACTTAGTGC
242320759 TAATCTCAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (29 bp):
CACTTAGTGCCATGCATTTCAAGCTCGCA
Found at i:242333339 original size:39 final size:40
Alignment explanation
Indices: 242333183--242333397 Score: 339
Period size: 40 Copynumber: 5.5 Consensus size: 40
242333173 CGGATGATAA
*
242333183 CCGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
242333223 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
242333263 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
242333303 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
242333342 CCGGGCTAAGTCCCGAAGGCATTTGAGCG-GTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
242333381 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
242333398 TACTTGGTTG
Statistics
Matches: 167, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
37 8 0.05
38 6 0.04
39 47 0.28
40 106 0.63
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:242341389 original size:40 final size:40
Alignment explanation
Indices: 242341334--242341548 Score: 330
Period size: 39 Copynumber: 5.5 Consensus size: 40
242341324 CGGATGATAA
242341334 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
242341374 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
242341414 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
242341452 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
242341492 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
**
242341531 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
242341549 TACTTGGTTG
Statistics
Matches: 164, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 16 0.10
39 82 0.50
40 66 0.40
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:242341497 original size:79 final size:79
Alignment explanation
Indices: 242341330--242341548 Score: 336
Period size: 79 Copynumber: 2.8 Consensus size: 79
242341320 TACTCGGATG
242341330 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTCCGGGCTAAGTCCCGAAGGCA
*
242341395 TTTGTGCGAGTTACT
65 ATTGTGCGAGTTACT
**
242341410 AT-TTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCGGGCTAAGTCCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCGGGCTAAGTCCCGAAGGCAA
242341474 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * **
242341488 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGC-AGTAACTATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TCCGGGCTAAGTCCCGAAGG
242341549 TACTTGGTTG
Statistics
Matches: 128, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
78 61 0.48
79 65 0.51
80 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTCCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:242349375 original size:29 final size:29
Alignment explanation
Indices: 242349342--242349415 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
242349332 CCTTCGAGCT
242349342 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
242349371 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
242349400 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
242349416 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:242349376 original size:58 final size:58
Alignment explanation
Indices: 242349283--242349415 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
242349273 ATACTCGATT
* * * * *
242349283 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
242349341 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
242349399 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
242349416 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:242359525 original size:40 final size:40
Alignment explanation
Indices: 242359470--242359688 Score: 372
Period size: 40 Copynumber: 5.5 Consensus size: 40
242359460 TTCGGATGAC
242359470 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
242359510 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
242359550 ATCTGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
242359589 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
242359629 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
242359669 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
242359689 TACTTGAGTT
Statistics
Matches: 171, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 53 0.31
40 116 0.68
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:242359606 original size:79 final size:80
Alignment explanation
Indices: 242359470--242359688 Score: 372
Period size: 79 Copynumber: 2.8 Consensus size: 80
242359460 TTCGGATGAC
242359470 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
242359535 TGTGCTAGTGACTAT
66 TGTGCTAGTGACTAT
*
242359550 ATCTGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
*
242359614 TGTGCTATTGACTAT
66 TGTGCTAGTGACTAT
* *
242359629 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
242359689 TACTTGAGTT
Statistics
Matches: 132, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
79 92 0.70
80 38 0.29
81 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
TGTGCTAGTGACTAT
Found at i:242369714 original size:39 final size:40
Alignment explanation
Indices: 242369656--242369756 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
242369646 AAATTGAATG
* *
242369656 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
242369695 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
242369735 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
242369757 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:242369749 original size:40 final size:40
Alignment explanation
Indices: 242369656--242369806 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
242369646 AAATTGAATG
* * * * *
242369656 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
242369695 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
242369735 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
242369775 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
242369807 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:242369821 original size:40 final size:38
Alignment explanation
Indices: 242369652--242369823 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
242369642 TGAGAAATTG
* *
242369652 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
242369691 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
242369728 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
242369768 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
242369808 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
242369824 TTAAAGTCCC
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:242377633 original size:36 final size:38
Alignment explanation
Indices: 242377577--242377676 Score: 116
Period size: 40 Copynumber: 2.7 Consensus size: 38
242377567 GCTGAAATTA
* *
242377577 TAATCC-GGTTAAGACCCGAAGGCAAT-TGCTAGTAGC
1 TAATCCGGGCTAAGACCCGAAGGCAATCTGCAAGTAGC
* * *
242377613 T-ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGT
1 TAATCCGGGCTAAGACCCGAAGGCAATC-TGCAAGTAGC
242377651 TAAATCCGGGCTAAGACCCGAAGGCA
1 T-AATCCGGGCTAAGACCCGAAGGCA
242377677 TTTGTGCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
35 4 0.07
36 19 0.35
38 8 0.15
40 23 0.43
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (38 bp):
TAATCCGGGCTAAGACCCGAAGGCAATCTGCAAGTAGC
Found at i:242381968 original size:79 final size:82
Alignment explanation
Indices: 242381831--242382015 Score: 256
Period size: 79 Copynumber: 2.3 Consensus size: 82
242381821 TCGAATGATG
*
242381831 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
242381895 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * * **
242381911 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
242381973 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
242381991 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
242382016 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:242382029 original size:40 final size:40
Alignment explanation
Indices: 242381831--242382015 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
242381821 TCGAATGATG
* * *
242381831 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
242381871 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
242381911 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
242381950 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
242381991 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
242382016 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 38 0.29
40 85 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:242382037 original size:79 final size:79
Alignment explanation
Indices: 242381831--242382048 Score: 252
Period size: 79 Copynumber: 2.7 Consensus size: 79
242381821 TCGAATGATG
* *
242381831 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAGATCCGAAGGCAT
242381894 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* *
242381911 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGAT-CCGAAGGCAT
242381973 TTGTGCGAGTTACTATAA
63 TTGTGCGAGTTACTA-AA
* **
242381991 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGA-TCCGAAGG
242382049 TACGTGATTC
Statistics
Matches: 119, Mismatches: 9, Indels: 21
0.80 0.06 0.14
Matches are distributed among these distances:
78 1 0.01
79 70 0.59
80 48 0.40
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:242382045 original size:119 final size:119
Alignment explanation
Indices: 242381831--242382048 Score: 273
Period size: 119 Copynumber: 1.8 Consensus size: 119
242381821 TCGAATGATG
*
242381831 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
** *
242381896 GTGCGAGTTACTAAATCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
66 GAACGAGTTACTAAATCCGGACTAACTCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
242381950 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCAT
* *
242382013 TTGAACGAG-TAGCTATATCCGG-TTAAACTCCGAAGG
64 TTGAACGAGTTA-CTAAATCCGGACT-AACTCCGAAGG
242382049 TACGTGATTC
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
118 4 0.05
119 73 0.87
120 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAATCCGGACTAACTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:242384699 original size:19 final size:20
Alignment explanation
Indices: 242384664--242384703 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
242384654 ACCGGGTGCT
242384664 ACCACTGCTCGGGGTAGACC
1 ACCACTGCTCGGGGTAGACC
242384684 ACCACTGCTC-GGGTAGACC
1 ACCACTGCTCGGGGTAGACC
242384703 A
1 A
242384704 TCTAGAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.23, C:0.35, G:0.28, T:0.15
Consensus pattern (20 bp):
ACCACTGCTCGGGGTAGACC
Found at i:242390089 original size:78 final size:81
Alignment explanation
Indices: 242389955--242390137 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
242389945 CGAATGATGT
*
242389955 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
242390019 GTGCGAGTTACTA-AA
66 GTGCGAGTTACTATAA
* * **
242390034 TCC-GGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
242390095 TTGTGCGAGTTACTATAA
64 TTGTGCGAGTTACTATAA
*
242390113 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
242390138 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 52 0.57
79 24 0.26
80 15 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATAA
Found at i:242390151 original size:40 final size:40
Alignment explanation
Indices: 242389954--242390137 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
242389944 TCGAATGATG
* * *
242389954 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
242389994 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
242390034 TCC-GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
242390072 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
242390113 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
242390138 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 31 0.24
39 13 0.10
40 77 0.59
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:242393851 original size:40 final size:40
Alignment explanation
Indices: 242393806--242393972 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
242393796 CGGAATATAA
242393806 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242393846 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
242393886 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242393926 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242393965 CCGGATAT
1 CCGGATAT
242393973 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242393956 original size:80 final size:79
Alignment explanation
Indices: 242393822--242393972 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
242393812 ATAATCACGT
*
242393822 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
242393887 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
242393902 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
242393965 CCGGATAT
64 CCGGATAT
242393973 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:242394814 original size:17 final size:19
Alignment explanation
Indices: 242394791--242394836 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242394781 AAGAAGCATG
242394791 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242394809 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242394827 AATCATGCTC
1 AATCATGCTC
242394837 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242401840 original size:39 final size:40
Alignment explanation
Indices: 242401796--242401961 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
242401786 CGGAATATAA
*
242401796 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242401835 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242401875 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242401915 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242401954 CCGGATAT
1 CCGGATAT
242401962 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242402807 original size:17 final size:19
Alignment explanation
Indices: 242402784--242402829 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242402774 AAGAAGCATG
242402784 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242402802 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242402820 AATCATGCTC
1 AATCATGCTC
242402830 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242406016 original size:40 final size:40
Alignment explanation
Indices: 242405971--242406137 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
242405961 CGGAATATAA
242405971 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242406011 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
242406051 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242406091 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242406130 CCGGATAT
1 CCGGATAT
242406138 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242406121 original size:80 final size:79
Alignment explanation
Indices: 242405987--242406137 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
242405977 ATAATCACGT
*
242405987 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
242406052 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
242406067 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
242406130 CCGGATAT
64 CCGGATAT
242406138 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:242414020 original size:40 final size:40
Alignment explanation
Indices: 242413975--242414141 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242413965 CGGAATATAA
242413975 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242414015 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
242414055 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242414095 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242414134 CCGGATAT
1 CCGGATAT
242414142 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242414125 original size:80 final size:79
Alignment explanation
Indices: 242413975--242414141 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
242413965 CGGAATATAA
* *
242413975 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
242414040 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
242414055 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
242414117 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
242414134 CCGGATAT
1 CCGGATAT
242414142 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:242414985 original size:17 final size:19
Alignment explanation
Indices: 242414962--242415007 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242414952 AAGAAGCATG
242414962 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242414980 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242414998 AATCATGCTC
1 AATCATGCTC
242415008 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242418222 original size:40 final size:40
Alignment explanation
Indices: 242418177--242418306 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
242418167 CGGAATACAA
242418177 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
242418217 CCGGATAGAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
242418257 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
242418297 CCGGATATAA
1 CCGGATATAA
242418307 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:242426329 original size:32 final size:32
Alignment explanation
Indices: 242426286--242426348 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
242426276 GCGGGTTTGC
* *
242426286 AGCCATTAGTAGCGGTAATTTGATCGGCACAA
1 AGCCATCAGTAGCGGTAATATGATCGGCACAA
**
242426318 AGCCATCAGTAGTTGTAATATGATCGGCACA
1 AGCCATCAGTAGCGGTAATATGATCGGCACA
242426349 TAACCATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (32 bp):
AGCCATCAGTAGCGGTAATATGATCGGCACAA
Found at i:242426414 original size:27 final size:27
Alignment explanation
Indices: 242426334--242426435 Score: 82
Period size: 27 Copynumber: 3.8 Consensus size: 27
242426324 CAGTAGTTGT
* *
242426334 AATATGATCGGCACATAACCATAGGTA
1 AATATGATAGGCACATAGCCATAGGTA
* * * * * *
242426361 AATA-GGTCGACACAGAGTCATAAGTA
1 AATATGATAGGCACATAGCCATAGGTA
*
242426387 AATATGATAGGCACATAGCCACAGGTA
1 AATATGATAGGCACATAGCCATAGGTA
* *
242426414 AATACGATTA-GCACAAAGCCAT
1 AATATGA-TAGGCACATAGCCAT
242426436 GAACAAGATG
Statistics
Matches: 57, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
26 20 0.35
27 35 0.61
28 2 0.04
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
AATATGATAGGCACATAGCCATAGGTA
Found at i:242426871 original size:27 final size:26
Alignment explanation
Indices: 242426850--242427037 Score: 171
Period size: 27 Copynumber: 7.0 Consensus size: 26
242426840 ATTTTAACCT
*
242426850 ACAGGGGTATTTTGGTAATTTTACACT
1 ACAGGGGTATTTTGGTAATTTTACA-A
* *
242426877 ACAAGGGTATTTTGGTAATTTTACCA
1 ACAGGGGTATTTTGGTAATTTTACAA
* *
242426903 ACTAAGGGTATTTTCGATAATTTTACAA
1 AC-AGGGGTATTTT-GGTAATTTTACAA
* * * *
242426931 ATAGTGGTATTTCGATAATTTTACAA
1 ACAGGGGTATTTTGGTAATTTTACAA
*
242426957 ACTGAGGGTATTTTGGTAATTTTACAAA
1 ACAG-GGGTATTTTGGTAATTTTAC-AA
* * *
242426985 ACGGGGGTATTTCGATAATTTTA-AA
1 ACAGGGGTATTTTGGTAATTTTACAA
* *
242427010 ATCCAGAGGTATTTCGGTAATTTTACAA
1 A--CAGGGGTATTTTGGTAATTTTACAA
242427038 TCTAGGATCT
Statistics
Matches: 134, Mismatches: 20, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.02
26 17 0.13
27 95 0.71
28 19 0.14
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTTGGTAATTTTACAA
Found at i:242426950 original size:81 final size:80
Alignment explanation
Indices: 242426855--242427037 Score: 228
Period size: 81 Copynumber: 2.3 Consensus size: 80
242426845 AACCTACAGG
* * *
242426855 GGTATTTTGGTAATTTTACACTAC-AAGGGTATTTTGGTAATTTTAC-CAACTAAGGGTATTTTC
1 GGTATTTCGGTAATTTTACA-AACTAAGGGTATTTTGGTAATTTTACAAAAC-AAGGGTA-TTTC
*
242426918 GATAATTTTACAAAT-AGT
63 GATAATTTTA-AAATCAGA
* * **
242426936 GGTATTTCGATAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAAACGGGGGTATTTCGAT
1 GGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAACAAGGGTATTTCGAT
242427001 AATTTTAAAATCCAGA
66 AATTTTAAAAT-CAGA
242427017 GGTATTTCGGTAATTTTACAA
1 GGTATTTCGGTAATTTTACAA
242427038 TCTAGGATCT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
79 4 0.04
80 16 0.18
81 66 0.74
82 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (80 bp):
GGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAACAAGGGTATTTCGAT
AATTTTAAAATCAGA
Found at i:242430692 original size:29 final size:29
Alignment explanation
Indices: 242430630--242430732 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
242430620 GTGTACGGTT
* *
242430630 TGGCACTGAGTGTGCGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * * *
242430659 CGGCACTAGGTGTGCGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
242430688 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
242430717 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
242430733 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
28 1 0.02
29 57 0.97
30 1 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:242438688 original size:29 final size:29
Alignment explanation
Indices: 242438626--242438728 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
242438616 GTGACGAGAT
* * *
242438626 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
242438655 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
242438684 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
242438713 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
242438729 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:242442570 original size:40 final size:40
Alignment explanation
Indices: 242442525--242442690 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
242442515 CGGAATATAA
242442525 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242442565 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
242442605 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242442644 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242442683 CCGGATAT
1 CCGGATAT
242442691 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242442647 original size:39 final size:38
Alignment explanation
Indices: 242442541--242442652 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
242442531 ATAATCACGT
* * *
242442541 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
242442581 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
242442620 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
242442653 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:242442674 original size:79 final size:78
Alignment explanation
Indices: 242442541--242442690 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
242442531 ATAATCACGT
*
242442541 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
242442606 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
242442620 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
242442683 CCGGATAT
64 CCGGATAT
242442691 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:242443538 original size:17 final size:19
Alignment explanation
Indices: 242443515--242443560 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242443505 AAGAAGCATG
242443515 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242443533 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242443551 AATCATGCTC
1 AATCATGCTC
242443561 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242450557 original size:40 final size:40
Alignment explanation
Indices: 242450512--242450678 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242450502 CGGAATATAA
242450512 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242450552 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
242450592 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242450632 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242450671 CCGGATAT
1 CCGGATAT
242450679 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242450662 original size:80 final size:79
Alignment explanation
Indices: 242450512--242450678 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
242450502 CGGAATATAA
* *
242450512 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
242450577 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
242450592 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
242450654 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
242450671 CCGGATAT
1 CCGGATAT
242450679 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:242451525 original size:17 final size:19
Alignment explanation
Indices: 242451502--242451547 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242451492 AAGAAGCATG
242451502 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242451520 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242451538 AATCATGCTC
1 AATCATGCTC
242451548 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242455075 original size:40 final size:40
Alignment explanation
Indices: 242455009--242455159 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
242454999 AAATTGAATG
* * *
242455009 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
242455048 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
242455088 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
242455128 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
242455160 ACATGGTTAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:242455173 original size:40 final size:40
Alignment explanation
Indices: 242455046--242455175 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
242455036 ATGCTGGAAA
* * *
242455046 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * **
242455086 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* *
242455126 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
242455166 TTATATCCGG
1 TTATATCCGG
242455176 TTATATTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:242463037 original size:40 final size:40
Alignment explanation
Indices: 242462971--242463121 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
242462961 AAATTGAATG
* * *
242462971 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
242463010 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
242463050 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
242463090 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
242463122 ACGGTTATAT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:242467905 original size:30 final size:30
Alignment explanation
Indices: 242467864--242467920 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
242467854 AAGTGTTTCT
* *
242467864 TGGCTGTGTGAGTCACATAGCCTAGCCACA
1 TGGCCGTGTGAGTCACACAGCCTAGCCACA
*
242467894 TGGCCGTGTGAGTCACACAGCTTAGCC
1 TGGCCGTGTGAGTCACACAGCCTAGCC
242467921 CCACAGCCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (30 bp):
TGGCCGTGTGAGTCACACAGCCTAGCCACA
Found at i:242470878 original size:39 final size:40
Alignment explanation
Indices: 242470712--242470918 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
242470702 CGGAATTTAA
* * * * **
242470712 CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* * * *
242470752 CCGGTTATAGTGACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
* ** * *
242470792 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
*
242470832 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGT-TTAGC
1 CCGGATATAATAACTCGCAC-AATTGCCTTCGGGTCTTAGC
* * *
242470871 CCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
242470911 CCGGATAT
1 CCGGATAT
242470919 CATTCCAATG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 104 0.74
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAATTGCCTTCGGGTCTTAGC
Found at i:242479001 original size:40 final size:40
Alignment explanation
Indices: 242478956--242479123 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
242478946 CGGAATATAA
242478956 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242478996 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242479036 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242479076 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
242479116 CCGGATAT
1 CCGGATAT
242479124 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242479106 original size:80 final size:80
Alignment explanation
Indices: 242478972--242479121 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
242478962 ATAATCACGT
*
242478972 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
242479036 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
242479052 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
242479115 CCCGGAT
64 CCCGGAT
242479122 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:242486985 original size:40 final size:39
Alignment explanation
Indices: 242486940--242487068 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
242486930 CGGAATATAA
242486940 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
242486980 CCGGATAGAATCTC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242487018 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
242487058 CCGGATATAAT
1 CCGGATATAAT
242487069 TTCCAGCATA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
38 32 0.44
40 41 0.56
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:242487005 original size:38 final size:37
Alignment explanation
Indices: 242486956--242487064 Score: 130
Period size: 38 Copynumber: 2.8 Consensus size: 37
242486946 ATAATCACGT
*
242486956 GCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AATCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGCAA-CTA
*
242486994 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGA--TAGCAACTA
*
242487034 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
242487065 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
38 30 0.48
39 2 0.03
40 30 0.48
41 1 0.02
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (37 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGCAACTA
Found at i:242487082 original size:40 final size:40
Alignment explanation
Indices: 242486940--242487105 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
242486930 CGGAATATAA
* ** *
242486940 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
242486980 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
242487018 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
242487058 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
242487098 CCGGATAT
1 CCGGATAT
242487106 CATTCAATTT
Statistics
Matches: 102, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
38 29 0.28
39 4 0.04
40 68 0.67
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:242491475 original size:40 final size:39
Alignment explanation
Indices: 242491427--242491527 Score: 105
Period size: 39 Copynumber: 2.5 Consensus size: 39
242491417 AAATTGAATG
**
242491427 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTAG-AAGCT
* * * * *
242491467 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
242491506 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAG-CCCGAAG
242491528 GCATTCGTGC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
39 30 0.60
40 20 0.40
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
Found at i:242491592 original size:40 final size:39
Alignment explanation
Indices: 242491425--242491594 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
242491415 AGAAATTGAA
* *
242491425 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
242491465 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
242491504 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
242491544 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
242491584 TGATATCCGGG
1 TGATATCCGGG
242491595 TAAAGTCCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 23 0.22
40 73 0.70
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:242503282 original size:40 final size:40
Alignment explanation
Indices: 242503237--242503403 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242503227 CGGAATATAA
242503237 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242503277 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
242503317 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242503357 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242503396 CCGGATAT
1 CCGGATAT
242503404 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242511269 original size:40 final size:40
Alignment explanation
Indices: 242511224--242511390 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242511214 CGGAATATAA
242511224 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242511264 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
242511304 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242511344 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242511383 CCGGATAT
1 CCGGATAT
242511391 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242515791 original size:40 final size:40
Alignment explanation
Indices: 242515732--242515873 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
242515722 AAATTGAATG
* * *
242515732 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
242515772 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
242515812 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
242515852 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
242515874 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:242515874 original size:40 final size:39
Alignment explanation
Indices: 242515771--242515899 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
242515761 TGCTGGAAAT
* * *
242515771 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
242515811 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
242515851 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
242515891 TATATCCGG
1 TATATCCGG
242515900 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:242523828 original size:40 final size:40
Alignment explanation
Indices: 242523725--242523890 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
242523715 AAATTGAATG
* * * * *
242523725 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
***
242523765 ATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
242523804 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * * *
242523844 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
242523883 ATATCCGG
1 ATATCCGG
242523891 TTATATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 46 0.43
40 58 0.55
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:242528633 original size:80 final size:80
Alignment explanation
Indices: 242528549--242528697 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
242528539 TATGGTAACC
* * * *
242528549 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
242528613 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
242528629 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
242528694 CCGG
66 CCGG
242528698 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:242528639 original size:40 final size:38
Alignment explanation
Indices: 242528590--242528697 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
242528580 ATCACGATTT
*
242528590 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
242528630 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
242528670 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
242528698 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:242535474 original size:80 final size:80
Alignment explanation
Indices: 242535390--242535538 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
242535380 TATGGTAACC
* * * *
242535390 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
242535454 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
242535470 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
242535535 CCGG
66 CCGG
242535539 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:242535480 original size:40 final size:38
Alignment explanation
Indices: 242535431--242535538 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
242535421 ATCACGATTT
*
242535431 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
242535471 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
242535511 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
242535539 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:242540308 original size:40 final size:40
Alignment explanation
Indices: 242540227--242540366 Score: 210
Period size: 40 Copynumber: 3.5 Consensus size: 40
242540217 CGGGCTAAGC
* * * *
242540227 CCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAATT
1 CCCGAAGGCATTTGTGC-GAGTTACCAAATCCGGGTTAATT
242540268 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
1 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
* *
242540308 -CCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
242540347 CCCGAAGGCATTTGTGCGAG
1 CCCGAAGGCATTTGTGCGAG
242540367 CTATTATAAC
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 37 0.41
40 38 0.42
41 16 0.18
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
Found at i:242540380 original size:40 final size:40
Alignment explanation
Indices: 242540216--242540407 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
242540206 TGAATGATAC
* * * * * *
242540216 CCGGGCTAAGCCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAT
*
242540257 CCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
242540297 CCGGGTTAA-TTCCGAAGGCAATTGTGCGAGTTACCAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* **
242540336 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* * * *
242540376 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
242540408 CGCCATATCC
Statistics
Matches: 130, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
39 37 0.28
40 67 0.52
41 26 0.20
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:242548333 original size:38 final size:40
Alignment explanation
Indices: 242548256--242548394 Score: 201
Period size: 40 Copynumber: 3.5 Consensus size: 40
242548246 CGGGCTAAGC
* * * *
242548256 CCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTTAATT
1 CCCGAAGGCATTTGTGC-GAGTTACCAAATCCGGGTTAATT
242548297 CCCGAAGGCATTTGT-CGAGTTA-CAAATCCGGGTTAATT
1 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
* *
242548335 CCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGT
1 CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
242548375 CCCGAAGGCATTTGTGCGAG
1 CCCGAAGGCATTTGTGCGAG
242548395 CTATTATAAC
Statistics
Matches: 89, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
38 29 0.33
39 11 0.12
40 35 0.39
41 14 0.16
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCCGAAGGCATTTGTGCGAGTTACCAAATCCGGGTTAATT
Found at i:242551839 original size:71 final size:71
Alignment explanation
Indices: 242551751--242551914 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
242551741 GAGATGTATC
242551751 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
242551816 AGGACA
66 AGGACA
*
242551822 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
242551887 CGGACA
66 AGGACA
242551893 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
242551915 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:242554235 original size:97 final size:92
Alignment explanation
Indices: 242554104--242554309 Score: 290
Period size: 97 Copynumber: 2.2 Consensus size: 92
242554094 AATTACGGGG
* **
242554104 TATTCTGCGTTT-TCTATGAGTTGGTTTTGATTCTCCGGCATAGTATCGTATCTTGGGTTTCTTT
1 TATTCTG-GTTTCTCTATGAGTTGGTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTCTTT
242554168 ATCCTAAATCTCTTTATTCTGGATTTCTT
65 ATCCTAAATCTCTTTATTCTGGA-TTCTT
242554197 TATTCTGTGTTTTCTCTGATGAGTTTGGTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
1 TATTCTG-G-TTTCTCT-ATGAG-TTGGTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTC
**
242554262 TTTATCCTGGATCTCTTTATTCTGGATTCTT
62 TTTATCCTAAATCTCTTTATTCTGGATTCTT
242554293 T-TTCTGGGTTTCTCTAT
1 TATTCT-GGTTTCTCTAT
242554310 CTTGGATTTC
Statistics
Matches: 102, Mismatches: 6, Indels: 10
0.86 0.05 0.08
Matches are distributed among these distances:
93 10 0.10
94 10 0.10
95 8 0.08
96 12 0.12
97 62 0.61
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.51
Consensus pattern (92 bp):
TATTCTGGTTTCTCTATGAGTTGGTTTCGATTCTCCGGCATAGTATCGTATCTTAAGTTTCTTTA
TCCTAAATCTCTTTATTCTGGATTCTT
Found at i:242554278 original size:15 final size:15
Alignment explanation
Indices: 242554258--242554324 Score: 66
Period size: 15 Copynumber: 4.6 Consensus size: 15
242554248 GTATCTTAAG
242554258 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
242554273 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
242554288 -TTCTTT-TTCTGGG
1 TTTCTTTATCCTGGA
* *
242554301 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
242554316 TTTCTTTAT
1 TTTCTTTAT
242554325 TCGGTTTCTT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
13 6 0.15
14 10 0.24
15 25 0.61
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:242554334 original size:13 final size:14
Alignment explanation
Indices: 242554257--242554334 Score: 63
Period size: 15 Copynumber: 5.5 Consensus size: 14
242554247 CGTATCTTAA
*
242554257 GTTTCTTTATCCTG
1 GTTTCTTTATTCTG
*
242554271 GATCTCTTTATTCTG
1 G-TTTCTTTATTCTG
*
242554286 GATTCTTT-TTCTGG
1 GTTTCTTTATTCT-G
*
242554300 GTTTCTCTA-TCTTG
1 GTTTCTTTATTC-TG
242554314 GATTTCTTTATTC-G
1 G-TTTCTTTATTCTG
242554328 GTTTCTT
1 GTTTCTT
242554335 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
13 10 0.20
14 19 0.37
15 20 0.39
16 2 0.04
ACGTcount: A:0.09, C:0.18, G:0.15, T:0.58
Consensus pattern (14 bp):
GTTTCTTTATTCTG
Found at i:242559634 original size:39 final size:40
Alignment explanation
Indices: 242559536--242559715 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
242559526 TTCGAATGGT
* * *
242559536 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
242559577 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
242559617 A-ACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * * *
242559656 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
242559697 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
242559716 ACAATCGAGC
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
39 34 0.29
40 57 0.48
41 28 0.24
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:242559714 original size:80 final size:80
Alignment explanation
Indices: 242559538--242559715 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
242559528 CGAATGGTAT
* *
242559538 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
242559603 GTGCGAGTTACCAAA
66 GTGCGAATCACCAAA
* * * *
242559618 ACGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
242559681 TGTGCGAATCACTATAA
65 TGTGCGAATCACCA-AA
*
242559698 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
242559716 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 41 0.49
80 42 0.50
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAA
Found at i:242559736 original size:40 final size:40
Alignment explanation
Indices: 242559658--242559741 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
242559648 GTTACTAAAT
* * *
242559658 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
242559698 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
242559738 CCGG
1 CCGG
242559742 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:242563860 original size:40 final size:40
Alignment explanation
Indices: 242563717--242563883 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
242563707 CGGAATATAA
** *
242563717 CCGGATATAA-CACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
242563756 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
242563796 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
242563836 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
242563876 CCGGATAT
1 CCGGATAT
242563884 CATTCAATTT
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 11 0.11
40 90 0.87
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:242563866 original size:80 final size:80
Alignment explanation
Indices: 242563732--242563881 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
242563722 TATAACACGT
* *
242563732 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
242563797 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
242563812 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
242563875 CCCGGAT
64 CCCGGAT
242563882 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:242571764 original size:40 final size:39
Alignment explanation
Indices: 242571638--242571804 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
242571628 CGGAATATAA
242571638 CCGGATATAA-CACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* ** *
242571677 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGC
* *
242571717 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
242571757 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGC
242571797 CCGGATAT
1 CCGGATAT
242571805 CATTCAATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 12 0.11
40 95 0.89
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:242571787 original size:80 final size:80
Alignment explanation
Indices: 242571653--242571804 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
242571643 TATAACACGT
* *
242571653 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
242571718 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
242571733 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
242571796 CCCGGATAT
64 CCCGGATAT
242571805 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:242577383 original size:20 final size:21
Alignment explanation
Indices: 242577345--242577383 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
242577335 TTTTTTTTTC
242577345 TTTTTTTTCTTCATATTCTCT
1 TTTTTTTTCTTCATATTCTCT
*
242577366 TTTTTTTTTTTCAT-TTCT
1 TTTTTTTTCTTCATATTCT
242577384 TTATTCTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTTTTTCTTCATATTCTCT
Found at i:242583983 original size:29 final size:29
Alignment explanation
Indices: 242583951--242584023 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
242583941 CTTCGAGCTC
* *
242583951 GCACAC-CAGTGCCGTATTTTTTCCAGCAT
1 GCACACTCAGTGCCATA-TATTTCCAGCAT
*
242583980 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTCAGTGCCATATATTTCCAGCAT
*
242584009 GCACACTTAGTGCCA
1 GCACACTCAGTGCCA
242584024 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 32 0.80
30 8 0.20
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (29 bp):
GCACACTCAGTGCCATATATTTCCAGCAT
Found at i:242585181 original size:17 final size:16
Alignment explanation
Indices: 242585143--242585194 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 16
242585133 GAATGAACAC
242585143 TTTTTTTTTC-TTTCT
1 TTTTTTTTTCATTTCT
*
242585158 TTGTTTTTCTTCATATCTT
1 TT-TTTTT-TTCATTTC-T
242585177 TTTTTTTTTCATTTCT
1 TTTTTTTTTCATTTCT
242585193 TT
1 TT
242585195 ATTCTTCTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 2 0.06
16 8 0.26
17 10 0.32
18 8 0.26
19 3 0.10
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTTTTTTCATTTCT
Found at i:242587904 original size:27 final size:27
Alignment explanation
Indices: 242587882--242587950 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 27
242587872 GCATATAGTG
*
242587882 AATCCGCACACTTAGTGCTATATATTTTC
1 AATCCGCACACTTAGTGCTATATA--ATC
* *
242587911 -AGCTCGCACACTTAGTGCTATAGAATC
1 AATC-CGCACACTTAGTGCTATATAATC
242587938 AAT-CGCACACTTA
1 AATCCGCACACTTA
242587951 CCCGTTCGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
26 10 0.29
27 2 0.06
28 3 0.09
29 19 0.56
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.30
Consensus pattern (27 bp):
AATCCGCACACTTAGTGCTATATAATC
Found at i:242588042 original size:23 final size:23
Alignment explanation
Indices: 242588016--242588074 Score: 86
Period size: 21 Copynumber: 2.7 Consensus size: 23
242588006 TAGTGAATCA
242588016 ACTTAGTGCTATACAGCTCGCAC
1 ACTTAGTGCTATACAGCTCGCAC
*
242588039 ACTTAGTGCTAT--ATCTCGCAC
1 ACTTAGTGCTATACAGCTCGCAC
*
242588060 ACTTAGTGCTGTACA
1 ACTTAGTGCTATACA
242588075 TTTTACCCGC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 19 0.59
23 13 0.41
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (23 bp):
ACTTAGTGCTATACAGCTCGCAC
Found at i:242596001 original size:30 final size:29
Alignment explanation
Indices: 242595907--242596008 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
242595897 TATAGTGAAT
* * *
242595907 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
242595936 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
242595964 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
242595994 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
242596009 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:242600195 original size:40 final size:39
Alignment explanation
Indices: 242600138--242600322 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
242600128 ATTAAATGAT
* * *
242600138 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
242600178 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
242600218 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
242600258 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
242600298 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
242600323 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:242600274 original size:80 final size:80
Alignment explanation
Indices: 242600137--242600343 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
242600127 AATTAAATGA
* * ** * *
242600137 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
242600202 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
242600215 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
242600280 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
242600297 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
242600344 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:242600328 original size:40 final size:39
Alignment explanation
Indices: 242600136--242600343 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
242600126 CAATTAAATG
* * ** *
242600136 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
242600176 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
242600216 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
242600256 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
242600296 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
242600336 ATATCCGG
1 ATATCCGG
242600344 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:242608169 original size:40 final size:39
Alignment explanation
Indices: 242608112--242608296 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
242608102 ATTAAATGAT
* * *
242608112 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
242608152 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
242608192 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
242608232 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
242608272 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
242608297 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:242608248 original size:80 final size:80
Alignment explanation
Indices: 242608111--242608317 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
242608101 AATTAAATGA
* * ** * *
242608111 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
242608176 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
242608189 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
242608254 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
242608271 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
242608318 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:242608302 original size:40 final size:39
Alignment explanation
Indices: 242608110--242608317 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
242608100 CAATTAAATG
* * ** *
242608110 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
242608150 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
242608190 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
242608230 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
242608270 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
242608310 ATATCCGG
1 ATATCCGG
242608318 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:242608521 original size:16 final size:16
Alignment explanation
Indices: 242608500--242608535 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
242608490 TTGATATCTG
242608500 TGAAAGTATACAATGA
1 TGAAAGTATACAATGA
242608516 TGAAAGTATACAATGA
1 TGAAAGTATACAATGA
242608532 TGAA
1 TGAA
242608536 GTGTGAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.50, C:0.06, G:0.19, T:0.25
Consensus pattern (16 bp):
TGAAAGTATACAATGA
Found at i:242612331 original size:40 final size:40
Alignment explanation
Indices: 242612244--242612500 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
242612234 AAGCCAAGTA
* * *
242612244 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
242612282 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACTAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
242612322 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
242612362 CCTTTGGGACTTAGCCCGGATAAAGCAACTCAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTC-GCACAAATG
242612402 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
242612442 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
242612482 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
242612501 TTATCATCCA
Statistics
Matches: 196, Mismatches: 17, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
38 12 0.06
39 18 0.09
40 165 0.84
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:242620607 original size:39 final size:39
Alignment explanation
Indices: 242620466--242620679 Score: 258
Period size: 39 Copynumber: 5.5 Consensus size: 39
242620456 TACTCGCTCG
* * *
242620466 ATGCCTTTGGGACATAGCCCGGATATAGTAACTCACAC-A
1 ATGCC-TTCGGACTTAGCCCGGATATAGTAACTCGCACAA
* * * *
242620505 ATGCTTTGGGACTTAGCCCGGATACAGCAACTCGCACAA
1 ATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAA
*
242620544 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAA
1 ATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAA
242620584 ATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAA
1 ATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAA
* * * *
242620623 ATGCCTTCGGGCTTAGCCCGGA-ATAGTCA-TAGCGC-A
1 ATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAA
242620659 ATG-CTTCGGGACTTAGCCCGG
1 ATGCCTTC-GGACTTAGCCCGG
242620680 TTATCATCCA
Statistics
Matches: 156, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
35 4 0.03
36 16 0.10
37 4 0.03
38 34 0.22
39 62 0.40
40 36 0.23
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (39 bp):
ATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAA
Done.