Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 764 of 770
Found at i:242620638 original size:78 final size:79
Alignment explanation
Indices: 242620466--242620679 Score: 280
Period size: 79 Copynumber: 2.8 Consensus size: 79
242620456 TACTCGCTCG
* * * *
242620466 ATGCCTTTGGGACATAGCCCGGATATAGTAAC-T-CACACAATGCTTTGGGACTTAGCCCGGATA
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACA-AATGCCTTCGGACTTAGCCCGGATA
242620529 CAGCAACTCGCACAA
65 CAGCAACTCGCACAA
*
242620544 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGACTTAGCCCGGATAT
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGACTTAGCCCGGATAC
*
242620609 AGTAACTCGCACAA
66 AGCAACTCGCACAA
* * *
242620623 ATGCCTTCGGG-CTTAGCCCGGA-ATAGTCA-TAGCGC-AATG-CTTCGGGACTTAGCCCGG
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTC-GGACTTAGCCCGG
242620680 TTATCATCCA
Statistics
Matches: 124, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
74 4 0.03
75 17 0.14
76 4 0.03
77 6 0.05
78 41 0.33
79 48 0.39
80 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (79 bp):
ATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGACTTAGCCCGGATAC
AGCAACTCGCACAA
Found at i:242624296 original size:40 final size:40
Alignment explanation
Indices: 242624237--242624346 Score: 129
Period size: 39 Copynumber: 2.8 Consensus size: 40
242624227 TACTGGAAAT
* *
242624237 TATATCCGGG-TAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
242624276 TATATCCGGGCTAAGACCCGAA-GC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* *
242624315 TCTATCCGGGCTAAGACCCG-AGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC
242624347 ACGTGATTGT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
38 4 0.07
39 44 0.72
40 13 0.21
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:242624358 original size:12 final size:12
Alignment explanation
Indices: 242624341--242624379 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
242624331 CCCGAGGCAT
242624341 TTGTGCACGTGA
1 TTGTGCACGTGA
242624353 TTGTGCACGTGA
1 TTGTGCACGTGA
242624365 TTTGTGCACGTGA
1 -TTGTGCACGTGA
242624378 TT
1 TT
242624380 ATATCCGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.38
Consensus pattern (12 bp):
TTGTGCACGTGA
Found at i:242624371 original size:13 final size:13
Alignment explanation
Indices: 242624339--242624379 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
242624329 GACCCGAGGC
242624339 ATTTGTGCACGTG
1 ATTTGTGCACGTG
242624352 A-TTGTGCACGTG
1 ATTTGTGCACGTG
242624364 ATTTGTGCACGTG
1 ATTTGTGCACGTG
242624377 ATT
1 ATT
242624380 ATATCCGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.44
13 15 0.56
ACGTcount: A:0.17, C:0.15, G:0.29, T:0.39
Consensus pattern (13 bp):
ATTTGTGCACGTG
Found at i:242632296 original size:40 final size:40
Alignment explanation
Indices: 242632230--242632396 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
242632220 AAATTGAATG
* * *
242632230 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
242632269 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
242632309 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
242632349 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
242632389 ATATCCGG
1 ATATCCGG
242632397 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:242636279 original size:28 final size:28
Alignment explanation
Indices: 242636210--242636310 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
242636200 GACAAGATTG
* * * *
242636210 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
242636240 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
242636268 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
242636297 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
242636311 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:242644219 original size:28 final size:28
Alignment explanation
Indices: 242644150--242644250 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
242644140 GACAAGATTG
* * * *
242644150 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
242644180 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
242644208 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
242644237 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
242644251 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:242650235 original size:2 final size:2
Alignment explanation
Indices: 242650228--242650259 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
242650218 ATGATTACAA
242650228 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
242650260 TCGTGGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:242657118 original size:40 final size:40
Alignment explanation
Indices: 242656994--242657120 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
242656984 GCTGGAAATT
* * *
242656994 TATCCGGGTTTAAGACCCGAAGGCATT-GTGCTAGTGGCTA
1 TATCCGGG-CTAAGACCCGAAGGCATTCGTGCGAGTGGTTA
* * *
242657034 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTA
242657074 TATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGGTTA
242657114 TATCCGG
1 TATCCGG
242657121 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
39 18 0.24
40 58 0.76
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTA
Found at i:242658658 original size:14 final size:14
Alignment explanation
Indices: 242658639--242658668 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
242658629 ATTATCGAGG
242658639 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
242658653 ACCAATCCAATTCA
1 ACCAATCCAAATCA
242658667 AC
1 AC
242658669 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:242659672 original size:31 final size:30
Alignment explanation
Indices: 242659627--242659688 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 30
242659617 AACATACAAT
242659627 CTCAAGCATTTAAGAATATAATTCAAGTTA
1 CTCAAGCATTTAAGAATATAATTCAAGTTA
242659657 CTCAAGCAATTTAAGAATATAATTCAAGTTA
1 CTCAAGC-ATTTAAGAATATAATTCAAGTTA
242659688 C
1 C
242659689 ACAAACTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (30 bp):
CTCAAGCATTTAAGAATATAATTCAAGTTA
Found at i:242671667 original size:39 final size:39
Alignment explanation
Indices: 242671558--242671709 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
242671548 TATGGTAACC
** * *
242671558 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
242671598 TGCACAATTGCCTTC-GGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
242671636 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
242671675 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
242671710 TCGAACATTC
Statistics
Matches: 101, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
38 32 0.32
39 57 0.56
40 12 0.12
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:242671667 original size:77 final size:79
Alignment explanation
Indices: 242671553--242671708 Score: 262
Period size: 78 Copynumber: 2.0 Consensus size: 79
242671543 CCCGTTATGG
242671553 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTC-GGCT
1 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
242671617 TAGCCCGGATATCA
66 TAGCCCGGATATCA
* ** *
242671631 TAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
1 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
242671695 TAGCCCGGATATCA
66 TAGCCCGGATATCA
242671709 CTCGAACATT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 35 0.48
78 38 0.52
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (79 bp):
TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGCCTTCGGGCT
TAGCCCGGATATCA
Found at i:242679519 original size:38 final size:39
Alignment explanation
Indices: 242679406--242679548 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
242679396 CCGCACAAAG
*
242679406 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
242679446 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
242679485 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
242679523 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
242679549 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:242679527 original size:77 final size:79
Alignment explanation
Indices: 242679366--242679547 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
242679356 TCGTTCAAAC
* * **
242679366 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
242679431 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
242679446 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
242679509 CAATTTGCACAATT
66 CAATTTGCACAATT
242679523 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
242679548 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:242684010 original size:31 final size:30
Alignment explanation
Indices: 242683938--242684003 Score: 98
Period size: 29 Copynumber: 2.2 Consensus size: 30
242683928 TGACGAGATT
* *
242683938 GGCACTAAGTGT-GCATGCTGGAAATATAT
1 GGCACTAAGTGTGGCATGCTGGAAAAATAC
242683967 GGCACTAAGTGTGGCATGCTGGAAAAAATAC
1 GGCACTAAGTGTGGCATGCTGG-AAAAATAC
242683998 GGCACT
1 GGCACT
242684004 GGGTGTGCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 12 0.36
30 9 0.27
31 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.23
Consensus pattern (30 bp):
GGCACTAAGTGTGGCATGCTGGAAAAATAC
Found at i:242685462 original size:30 final size:30
Alignment explanation
Indices: 242685426--242685484 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
242685416 GTAACACCAC
242685426 GTGTTCAAATCCGGTGACGGTCACGGGTTT
1 GTGTTCAAATCCGGTGACGGTCACGGGTTT
242685456 GTGTTCAAATCCGGTGACGGTCACGGGTT
1 GTGTTCAAATCCGGTGACGGTCACGGGTT
242685485 GGGGTGTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (30 bp):
GTGTTCAAATCCGGTGACGGTCACGGGTTT
Found at i:242691848 original size:29 final size:30
Alignment explanation
Indices: 242691798--242691863 Score: 116
Period size: 29 Copynumber: 2.2 Consensus size: 30
242691788 GTGACGAGAT
*
242691798 TGGCACTAAGTTGTGCATGCTGGAAATATA
1 TGGCACTAAGTTGTGCATGCTGGAAAAATA
242691828 TGGCACTAAG-TGTGCATGCTGGAAAAATA
1 TGGCACTAAGTTGTGCATGCTGGAAAAATA
242691857 TGGCACT
1 TGGCACT
242691864 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 25 0.71
30 10 0.29
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (30 bp):
TGGCACTAAGTTGTGCATGCTGGAAAAATA
Found at i:242691959 original size:36 final size:36
Alignment explanation
Indices: 242691912--242691986 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
242691902 CTTAAATTGC
242691912 GTGGCACTAAGTGTGCGAAATCGAGTATTAAGCACT
1 GTGGCACTAAGTGTGCGAAATCGAGTATTAAGCACT
242691948 GTGGCACTAAGTGTGCGAAATCGAGTATTAAGCACT
1 GTGGCACTAAGTGTGCGAAATCGAGTATTAAGCACT
242691984 GTG
1 GTG
242691987 TGTGCGTACT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (36 bp):
GTGGCACTAAGTGTGCGAAATCGAGTATTAAGCACT
Found at i:242695536 original size:30 final size:30
Alignment explanation
Indices: 242695481--242695668 Score: 237
Period size: 30 Copynumber: 6.5 Consensus size: 30
242695471 GTAGTGAATC
242695481 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
242695510 CGCGCACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
242695540 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
242695570 CGCACACTTAGTGC--TAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
242695597 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
242695625 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
242695655 CGCACACTTAGTGC
1 CGCACACTTAGTGC
242695669 CAATCTTGTC
Statistics
Matches: 141, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
27 26 0.18
28 24 0.17
29 21 0.15
30 69 0.49
31 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:242695659 original size:85 final size:86
Alignment explanation
Indices: 242695480--242695668 Score: 251
Period size: 85 Copynumber: 2.2 Consensus size: 86
242695470 TGTAGTGAAT
* *
242695480 CCGCACACTTAGTGCTATATATTTTCAGCTCGCGCACTTAGTGCTATATAATTTTCAGCTCGCAC
1 CCGCACACTTAGTGC-ATATATTTTCAGCTCGCACACTTAGTGCTATATAA--TTCAACTCGCAC
* *
242695545 ACTTAGTGCCATGTAATTTTCAGC
63 ACTTAGTGCCATGTAATTTTAAAC
*
242695569 TCGCACACTTAGTGC-TATATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACTCGCACAC
1 CCGCACACTTAGTGCATATATTTTCAGCTCGCACACTTAGTGCTATATAATTC-AACTCGCACAC
242695632 TTAGTG-C-TGTACAATTTTAAAC
65 TTAGTGCCATGT--AATTTTAAAC
242695654 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
242695669 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
83 3 0.03
84 3 0.03
85 38 0.42
87 33 0.36
89 14 0.15
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (86 bp):
CCGCACACTTAGTGCATATATTTTCAGCTCGCACACTTAGTGCTATATAATTCAACTCGCACACT
TAGTGCCATGTAATTTTAAAC
Found at i:242703499 original size:30 final size:30
Alignment explanation
Indices: 242703444--242703633 Score: 255
Period size: 30 Copynumber: 6.5 Consensus size: 30
242703434 GTAGTGAATC
242703444 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
242703473 CGCGCACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
242703503 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
242703533 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
242703562 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
242703590 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
242703620 CGCACACTTAGTGC
1 CGCACACTTAGTGC
242703634 CAATCTTGTC
Statistics
Matches: 144, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.15
29 47 0.33
30 72 0.50
31 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:242703614 original size:87 final size:87
Alignment explanation
Indices: 242703443--242703633 Score: 271
Period size: 89 Copynumber: 2.2 Consensus size: 87
242703433 TGTAGTGAAT
* *
242703443 CCGCACACTTAGTGCTATATATTTTCAGCTCGCGCACTTAGTGCTATATAATTTTCAGCTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA--TTCAACTCGCAC
* *
242703508 ACTTAGTGCCATGTAATTTTCAGC
64 ACTTAGTGCCATGTAATTTTAAAC
*
242703532 TCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACTCGCACA
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTC-AACTCGCACA
242703596 CTTAGTG-C-TGTACAATTTTAAAC
65 CTTAGTGCCATGT--AATTTTAAAC
242703619 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
242703634 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 38 0.41
89 49 0.53
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (87 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTCAACTCGCACAC
TTAGTGCCATGTAATTTTAAAC
Found at i:242706271 original size:20 final size:20
Alignment explanation
Indices: 242706248--242706285 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
242706238 GTTTATTCGC
*
242706248 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
242706268 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
242706286 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:242707946 original size:28 final size:28
Alignment explanation
Indices: 242707914--242707982 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
242707904 GCGTAGATCA
242707914 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
242707942 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
242707970 CGATA-TACCCCTA
1 CGAAATTACCCCTA
242707983 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:242714282 original size:20 final size:20
Alignment explanation
Indices: 242714257--242714294 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
242714247 GTTTATTCGC
*
242714257 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
242714277 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
242714295 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:242715955 original size:28 final size:28
Alignment explanation
Indices: 242715923--242715991 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
242715913 GCGTAGATCA
242715923 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
242715951 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
242715979 CGATA-TACCCCTA
1 CGAAATTACCCCTA
242715992 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:242720480 original size:40 final size:40
Alignment explanation
Indices: 242720429--242720538 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
242720419 TTTCACAATT
* *
242720429 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242720469 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242720509 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
242720539 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:242722182 original size:18 final size:18
Alignment explanation
Indices: 242722159--242722195 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
242722149 TTGGTTTGTG
242722159 GTCCCGAAACCACATCCC
1 GTCCCGAAACCACATCCC
242722177 GTCCCGAAACCACATCCC
1 GTCCCGAAACCACATCCC
242722195 G
1 G
242722196 ACTAGGGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.49, G:0.14, T:0.11
Consensus pattern (18 bp):
GTCCCGAAACCACATCCC
Found at i:242726013 original size:27 final size:26
Alignment explanation
Indices: 242725975--242726031 Score: 105
Period size: 27 Copynumber: 2.2 Consensus size: 26
242725965 TATCATACCC
242725975 TTTGCTTCTTTTAACCACTGTTTTCAA
1 TTTGCTTCTTTTAACCACTG-TTTCAA
242726002 TTTGCTTCTTTTAACCACTGTTTCAA
1 TTTGCTTCTTTTAACCACTGTTTCAA
242726028 TTTG
1 TTTG
242726032 TTAACTGGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 10 0.33
27 20 0.67
ACGTcount: A:0.18, C:0.21, G:0.09, T:0.53
Consensus pattern (26 bp):
TTTGCTTCTTTTAACCACTGTTTCAA
Found at i:242726823 original size:23 final size:23
Alignment explanation
Indices: 242726797--242726844 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
242726787 GAAGCATTTT
242726797 TACTATAAGTTAGCAATCTTTAA
1 TACTATAAGTTAGCAATCTTTAA
242726820 TACTATAAGTTAGCAATCTTTAA
1 TACTATAAGTTAGCAATCTTTAA
242726843 TA
1 TA
242726845 AAAAGAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (23 bp):
TACTATAAGTTAGCAATCTTTAA
Found at i:242728816 original size:27 final size:27
Alignment explanation
Indices: 242728778--242728831 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
242728768 TGATCCAGGC
242728778 GTACTCATCTCCTCTTCCCTATCTATT
1 GTACTCATCTCCTCTTCCCTATCTATT
242728805 GTACTCATCTCCTCTTCCCTATCTATT
1 GTACTCATCTCCTCTTCCCTATCTATT
242728832 ATACAACCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.37, G:0.04, T:0.44
Consensus pattern (27 bp):
GTACTCATCTCCTCTTCCCTATCTATT
Found at i:242731751 original size:40 final size:40
Alignment explanation
Indices: 242731696--242731865 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
242731686 AACATTGGAA
242731696 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
242731736 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
242731776 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
242731815 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
242731856 CTATATCCGG
1 ATATATCCGG
242731866 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:242739823 original size:41 final size:41
Alignment explanation
Indices: 242739766--242739871 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 41
242739756 AACATTGGAA
242739766 ATATATCCGGGCTAAGAACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGAACCCGAAGGCATTCGTGCGAGTTG
242739807 ATATATCCGGGCTAAG-ACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGAACCCGAAGGCATTCGTGCGAGTTG
242739847 ATATAT-CGGGCTAAGAA-CCGAAGGC
1 ATATATCCGGGCTAAGAACCCGAAGGC
242739872 CTTTGGTGCA
Statistics
Matches: 64, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
39 17 0.27
40 31 0.48
41 16 0.25
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (41 bp):
ATATATCCGGGCTAAGAACCCGAAGGCATTCGTGCGAGTTG
Found at i:242745493 original size:40 final size:39
Alignment explanation
Indices: 242745325--242745495 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
242745315 AGAAATTGAA
* *
242745325 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
242745365 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
242745405 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
242745445 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
242745485 TGATATCCGGG
1 TGATATCCGGG
242745496 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:242754014 original size:12 final size:12
Alignment explanation
Indices: 242753997--242754023 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
242753987 TTAGACTAGT
242753997 CATATATATATA
1 CATATATATATA
242754009 CATATATATATA
1 CATATATATATA
242754021 CAT
1 CAT
242754024 GTCATGATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (12 bp):
CATATATATATA
Found at i:242755522 original size:40 final size:40
Alignment explanation
Indices: 242755477--242755606 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
242755467 CGGAATATAA
242755477 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242755517 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242755557 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
242755597 CCGGATATAA
1 CCGGATATAA
242755607 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242755627 original size:80 final size:80
Alignment explanation
Indices: 242755493--242755642 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 80
242755483 ATAACCACGT
* * *
242755493 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
242755558 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** ** *
242755573 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGGCTTAGC
242755637 CCGGAT
65 CCGGAT
242755643 ATCATTCAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.02
80 58 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:242763099 original size:40 final size:40
Alignment explanation
Indices: 242763054--242763221 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
242763044 CGGAATATAA
242763054 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
242763094 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
242763134 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
242763174 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
242763214 CCGGATAT
1 CCGGATAT
242763222 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242763204 original size:80 final size:80
Alignment explanation
Indices: 242763070--242763219 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
242763060 ATAACCACGT
* *
242763070 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
242763135 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
242763150 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
242763213 CCCGGAT
64 CCCGGAT
242763220 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:242766941 original size:40 final size:39
Alignment explanation
Indices: 242766896--242767025 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
242766886 CGGAATACAA
242766896 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
242766936 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
242766976 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
242767016 CCGGATATAA
1 CCGGATATAA
242767026 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:242780329 original size:64 final size:64
Alignment explanation
Indices: 242780228--242780351 Score: 194
Period size: 64 Copynumber: 1.9 Consensus size: 64
242780218 GCATTCATAA
*
242780228 CACATCTAATTAGGAGCAGTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAATTAGGAGCAGTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
242780292 CACATTTAGTTAGGAGCATTTGATTCATTTCAATCATATCATCCTAATTATTTGGCATAA
1 CACATCTAATTAGGAGCAGTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAA
242780352 ACATAGATAC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAATTAGGAGCAGTTGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:242780463 original size:43 final size:43
Alignment explanation
Indices: 242780415--242780758 Score: 147
Period size: 44 Copynumber: 8.0 Consensus size: 43
242780405 GTGGAATCGG
* * *
242780415 TGAATTCACA-AGCCTTATCTCCCTAAGCAGTAGGGTAACAGGC
1 TGAATTCACAGA-CCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * *
242780458 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA-GA
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
** ** * * *
242780500 TCGAAGACGA-AGGGTCTTAAACCCCTAAGCAGTAGGGTAACA-GA
1 T-GAATTC-ACA-GACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * * * *
242780544 TCGAATT-ACAGATCTTATCTCCCTAAGTAGTAGTGG-AGCA-GA
1 T-GAATTCACAGACCTTAACCCCCTAAGCAGTAG-GGAAACAGGC
** * * *
242780586 TCGAAGACGA-AGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGC
1 T-GAATTC-ACA-GACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
242780631 TGAAGATTTC-CAG-CTCTTAACCCCCTAAGCAGTAGGGAAACA-GA
1 TG-A-A-TTCACAGAC-CTTAACCCCCTAAGCAGTAGGGAAACAGGC
* ** ** *
242780675 TCAA-AGATGGACCTTAACCCCCTAAGCAGTAGGGTAACAGGC
1 TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * * *
242780717 CGAAGATT-ATAGATCTTATCCCCCTAAGCAGTAGGGAAACAG
1 TG-A-ATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAG
242780759 ATCAAAGGTA
Statistics
Matches: 230, Mismatches: 49, Indels: 43
0.71 0.15 0.13
Matches are distributed among these distances:
41 27 0.12
42 34 0.15
43 45 0.20
44 92 0.40
45 29 0.13
46 2 0.01
47 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (43 bp):
TGAATTCACAGACCTTAACCCCCTAAGCAGTAGGGAAACAGGC
Found at i:242780533 original size:44 final size:43
Alignment explanation
Indices: 242780467--242780761 Score: 244
Period size: 44 Copynumber: 6.8 Consensus size: 43
242780457 CTGAATTTAC
242780467 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
* * * *
242780510 AGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAATTAC--
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAA-GACGA
* * * *
242780553 AGATCTTATCTCCCTAAGTAGTAGTGG-AGCAGATCGAAGACGA
1 AGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGA
** * * * *
242780596 AGGGCCTTAAACCCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTC-C
1 A-GATCTTAACCCCCTAAGCAGTAGGGAAACAGATC-GAAGA---CGA
* * *
242780642 AGCTCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATG-
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
* * ** **
242780684 -GACCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAAGATTA
1 AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
*
242780726 TAGATCTTATCCCCCTAAGCAGTAGGGAAACAGATC
1 -AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATC
242780762 AAAGGTAACA
Statistics
Matches: 197, Mismatches: 39, Indels: 31
0.74 0.15 0.12
Matches are distributed among these distances:
41 36 0.18
42 28 0.14
43 8 0.04
44 89 0.45
45 33 0.17
46 2 0.01
47 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (43 bp):
AGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA
Found at i:242780586 original size:86 final size:89
Alignment explanation
Indices: 242780435--242780859 Score: 475
Period size: 86 Copynumber: 4.9 Consensus size: 89
242780425 AGCCTTATCT
242780435 CCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
*
242780498 GATCGAAGACGAAGGGTCTTAAAC
66 GATCGAAGACGAAGGGCCTTAAAC
* * * * *
242780522 CCCTAAGCAGTAGGGTAACA-GATCG-A-A-TTACAGATCTTATCTCCCTAAGTAGTAGTGG-AG
1 CCCTAAGCAGTAGGGTAACAGGCT-GAAGATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAA
242780582 CAGATCGAAGACGAAGGGCCTTAAAC
64 CAGATCGAAGACGAAGGGCCTTAAAC
* *
242780608 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAGCTCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* * *
242780673 GATC-AA-A-GATGGACCTTAACC
66 GATCGAAGACGAAGGGCCTTAAAC
* * *
242780694 CCCTAAGCAGTAGGGTAACAGGCCGAAGA-TTATAGATCTTATCCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* *
242780758 GATCAAAGGTAAC-AA--GCGTT-AAC
66 GATCGAA-G--ACGAAGGGCCTTAAAC
* * * * * *
242780781 CTCCTAAGCAGTAGGGTAACAGGCTGAAGATTTATAGATCTCATCACCATAAGCAGTAGGGAAGC
1 C-CCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAAC
*
242780846 AGATCAAAAGACGA
65 AGATC-GAAGACGA
242780860 CGAATCTTGC
Statistics
Matches: 291, Mismatches: 30, Indels: 33
0.82 0.08 0.09
Matches are distributed among these distances:
85 35 0.12
86 115 0.40
87 34 0.12
88 36 0.12
89 66 0.23
90 5 0.02
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (89 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
GATCGAAGACGAAGGGCCTTAAAC
Found at i:242780787 original size:44 final size:42
Alignment explanation
Indices: 242780646--242780802 Score: 156
Period size: 44 Copynumber: 3.7 Consensus size: 42
242780636 ATTTCCAGCT
*
242780646 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATGGAC--
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGAT-AACAA
* ** * * *
242780687 CTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAAGATTATAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGA-TA-ACAA
* *
242780731 CTTATCCCCCTAAGCAGTAGGGAAACAGATCAAAGGTAACAA
1 CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATAACAA
* *
242780773 GCGTTAACCTCCTAAGCAGTAGGGTAACAG
1 -C-TTAACCCCCTAAGCAGTAGGGAAACAG
242780803 GCTGAAGATT
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 32 0.34
42 4 0.04
43 3 0.03
44 54 0.58
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (42 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGATAACAA
Found at i:242780797 original size:174 final size:172
Alignment explanation
Indices: 242780435--242780853 Score: 519
Period size: 174 Copynumber: 2.4 Consensus size: 172
242780425 AGCCTTATCT
242780435 CCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
** *
242780498 GATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGATCGAATTACAGATCTTATC
66 GATC-AA-ACGAAGGACCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATC
* * * *
242780563 TCCCTAAGTAGTAGTGGAGCAGATCGAAGACGAAGGGCCTTAAAC
129 CCCCTAAGCAGTAGTGGAACAGATCAAAGACGAA-GGCCTTAAAC
* *
242780608 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTCCAGCTCTTAACCCCCTAAGCAGTAGGGAAACA
1 CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* * * *
242780673 GATCAAA-GATGGACCTTAACCCCCTAAGCAGTAGGGTAACAGGCCGAAGATTATAGATCTTATC
66 GATCAAACGAAGGACCTTAAACCCCTAAGCAGTAGGGTAACAGACCG-A-ATTACAGATCTTATC
*
242780737 CCCCTAAGCAGTAG-GGAAACAGATCAAAGGTAAC-AA-GCGTT-AAC
129 CCCCTAAGCAGTAGTGG-AACAGATCAAA-G--ACGAAGGCCTTAAAC
* * * * * *
242780781 CTCCTAAGCAGTAGGGTAACAGGCTGAAGATTTATAGATCTCATCACCATAAGCAGTAGGGAAGC
1 C-CCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAAC
242780846 AGATCAAA
65 AGATCAAA
242780854 AGACGACGAA
Statistics
Matches: 215, Mismatches: 22, Indels: 17
0.85 0.09 0.07
Matches are distributed among these distances:
172 33 0.15
173 33 0.15
174 105 0.49
175 40 0.19
176 2 0.01
177 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (172 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACA
GATCAAACGAAGGACCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCCC
CCTAAGCAGTAGTGGAACAGATCAAAGACGAAGGCCTTAAAC
Found at i:242783118 original size:26 final size:26
Alignment explanation
Indices: 242783088--242783223 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
242783078 TGATACAAAT
* *
242783088 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
242783114 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
242783140 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
242783166 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
242783192 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
242783218 TGATAA
1 TGATAA
242783224 GAATATCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:242785253 original size:137 final size:137
Alignment explanation
Indices: 242785007--242785293 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
242784997 TGAGTAGTCT
242785007 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
242785072 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
242785137 ACTGTTA
131 ACTGTTA
242785144 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
242785209 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCATTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
242785274 ACTGTTA
131 ACTGTTA
**
242785281 CCTTAATGGGCTT
1 CCCAAATGGGCTT
242785294 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:242798710 original size:29 final size:29
Alignment explanation
Indices: 242798677--242798750 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
242798667 GTGACGAGAT
242798677 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
242798706 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
242798735 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
242798751 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:242798766 original size:29 final size:28
Alignment explanation
Indices: 242798734--242798808 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
242798724 CTGGAAATAT
* *
242798734 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCT-AAAGCGC
** * *
242798763 ATGGCACTGTGTGTGCGGGCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTAAAGCGC
242798791 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
242798809 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGAGCTAAAGCGC
Found at i:242798777 original size:58 final size:57
Alignment explanation
Indices: 242798677--242798808 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 57
242798667 GTGACGAGAT
* * * * * *
242798677 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT--AAATCACA
* * ** * *
242798735 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
242798792 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
242798809 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
56 4 0.07
57 18 0.30
58 39 0.64
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.24
Consensus pattern (57 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTAAATCACA
Found at i:242802998 original size:40 final size:40
Alignment explanation
Indices: 242802949--242803154 Score: 114
Period size: 40 Copynumber: 5.1 Consensus size: 40
242802939 CGAAATTTAA
* * *
242802949 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACA-TAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGA-ATTAGC
* * *
242802989 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
* *** * * *
242803029 CCGGATTTAATAACTCGCACGAA-TGCCTTTGGGACTTAAC
1 CCGGATATAGCGACTCGCAC-AATTGCCTTCGGGAATTAGC
* * * ** * *
242803069 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT-GAC
1 CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAG-C
* * ** *
242803109 CCGGATTTAGTC-ACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAG-CGAC-TCGCACAATTGCCTTCGGGAATTAGC
242803150 CCGGA
1 CCGGA
242803155 CACCATTCGA
Statistics
Matches: 133, Mismatches: 26, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
39 3 0.02
40 101 0.76
41 28 0.21
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
CCGGATATAGCGACTCGCACAATTGCCTTCGGGAATTAGC
Found at i:242803153 original size:41 final size:40
Alignment explanation
Indices: 242802975--242803154 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
242802965 GCTCGATTGT
* * * *
242802975 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGC
* * *
242803015 CTTCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
242803055 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
* * * *
242803095 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGC
242803136 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
242803155 CACCATTCGA
Statistics
Matches: 113, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 84 0.74
41 28 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGC
Found at i:242811090 original size:40 final size:40
Alignment explanation
Indices: 242811046--242811196 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
242811036 TTATGTGATT
* * * *
242811046 TCGCACAATTGCCTTCGAGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* * * *
242811086 TCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
* *
242811126 TCGCACAAATGCCTTC-GGAGTT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTAAC
* *
242811165 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGACTTAGCCCGGA
242811197 CATTCGAATA
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 17 0.19
40 61 0.68
41 11 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAC
Found at i:242811139 original size:80 final size:80
Alignment explanation
Indices: 242811046--242811195 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
242811036 TTATGTGATT
* * * *
242811046 TCGCACAATTGCCTTCGAGAATT-AGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTT
1 TCGCACAAATGCCTTCG-GAATTGA-CCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTT
242811109 AACCCGGTTTTGGTAAC
64 AACCCGGTTTTGGTAAC
* * * *
242811126 TCGCACAAATGCCTTCGGAGTTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 TCGCACAAATGCCTTCGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTAA
242811191 CCCGG
66 CCCGG
242811196 ACATTCGAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 17 0.28
80 43 0.72
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGAATTGACCCGGATTTAATAACTTAGCACAAAAGCCTTCGGGACTTAA
CCCGGTTTTGGTAAC
Found at i:242814577 original size:45 final size:46
Alignment explanation
Indices: 242814414--242814588 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
242814404 TGGTTGAGCA
*
242814414 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
242814460 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
242814505 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
242814553 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
242814589 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:242821937 original size:46 final size:46
Alignment explanation
Indices: 242821887--242822062 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
242821877 TGGTTGAGCA
242821887 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
242821933 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
242821978 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
242822026 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
242822063 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:242822043 original size:93 final size:93
Alignment explanation
Indices: 242821884--242822055 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
242821874 GGATGGTTGA
* *
242821884 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
242821949 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
242821977 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
242822042 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
242822056 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:242826401 original size:29 final size:29
Alignment explanation
Indices: 242826361--242826434 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
242826351 GTTGAGAGAT
* *
242826361 TGGCACTGAGTGTGCGAGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
242826390 TGGCACTAAGTGTGCGAGTTTAAAGTATA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
242826419 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
242826435 CGGCTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:242834447 original size:29 final size:29
Alignment explanation
Indices: 242834407--242834509 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
242834397 GTTGAGAGAT
*
242834407 TGGCACTGAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
242834436 TGGCACTAAGTGTGCGAGCTTGAAATGCA
1 TGGCACTAAGTGTGCGAGCTTGAAATGCA
* **
242834465 TGGCACTAAGTGTGCGAG-TTTAAAGTATA
1 TGGCACTAAGTGTGCGAGCTTGAAA-TGCA
242834494 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
242834510 CGGCTGATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 5 0.07
29 64 0.93
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATGCA
Found at i:242838622 original size:47 final size:47
Alignment explanation
Indices: 242838553--242838643 Score: 157
Period size: 47 Copynumber: 1.9 Consensus size: 47
242838543 GCCAAGCTAG
*
242838553 CATCGAGGATCTGGTGACATCAAAAGCTTCGATCACACTATCACCGC
1 CATCGAGGATCTAGTGACATCAAAAGCTTCGATCACACTATCACCGC
242838600 CATCG-GGAATCTAGTGACATCAAAAGCTTCGATCACACTATCAC
1 CATCGAGG-ATCTAGTGACATCAAAAGCTTCGATCACACTATCAC
242838644 TCAAGACCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 2 0.05
47 40 0.95
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (47 bp):
CATCGAGGATCTAGTGACATCAAAAGCTTCGATCACACTATCACCGC
Found at i:242840403 original size:35 final size:35
Alignment explanation
Indices: 242840364--242840436 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
242840354 ACACATTATT
*
242840364 TATTCTCGTTAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
242840399 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
242840434 TAT
1 TAT
242840437 ATCACATACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:242844502 original size:58 final size:58
Alignment explanation
Indices: 242844382--242844548 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
242844372 GTGCCCACTG
*
242844382 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAA--CGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
242844437 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
242844495 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
242844549 TAATCATTCG
Statistics
Matches: 106, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
55 30 0.28
56 3 0.03
58 73 0.69
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:242844536 original size:29 final size:29
Alignment explanation
Indices: 242844389--242844545 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
242844379 CTGACCGATC
* *
242844389 TCGCACACATAGTGCTCGGTTGAA-GAA-
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
242844416 -CGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
242844443 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
242844473 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
242844501 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
242844531 TTGCACACACAGTGC
1 TCGCACACACAGTGC
242844546 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 21, Indels: 20
0.71 0.15 0.14
Matches are distributed among these distances:
26 14 0.14
27 6 0.06
28 12 0.12
29 57 0.58
30 9 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:242844881 original size:43 final size:43
Alignment explanation
Indices: 242844714--242845047 Score: 472
Period size: 43 Copynumber: 7.8 Consensus size: 43
242844704 CACCGGCATT
*
242844714 AAGCCTGCTAGGCACGAAGACCCGAAT--ACATCA-C--CACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
*
242844752 AAGCCTGCTAGGCACGAAGGCCCGAAATACATCATGCACACTGAGCACG
1 AAGCCTGCTAGGCACGAAGGCCCG-AATACA-CAT-CA-TC-G-GCACG
*
242844801 AAGCCTGC-AGGCACGAAGCCGCCCAAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAG--GCCCGAATACACATCATCGGCACG
242844845 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
242844888 AAGCCTGCTAGGCACGAAGGCCC-AATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
242844930 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCA-C-GCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
* *
242844971 AAGCCTGCTA-GCACGAAGGCCCCAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
*
242845013 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCA
242845048 CCGAGTTTCA
Statistics
Matches: 273, Mismatches: 5, Indels: 31
0.88 0.02 0.10
Matches are distributed among these distances:
38 23 0.08
39 3 0.01
40 23 0.08
41 17 0.06
42 61 0.22
43 83 0.30
44 13 0.05
45 12 0.04
46 1 0.00
47 2 0.01
48 13 0.05
49 18 0.07
50 4 0.01
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
Found at i:242845022 original size:83 final size:85
Alignment explanation
Indices: 242844714--242845048 Score: 472
Period size: 83 Copynumber: 3.9 Consensus size: 85
242844704 CACCGGCATT
* *
242844714 AAGCCTGCTAGGCACGAAGACCCGAAT--ACATCA-C--CACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
242844774 CGAAATACATCATGCACACTGAGCACG
66 CG-AATACA-CAT---CAC-G-GCACG
*
242844801 AAGCCTGC-AGGCACGAAGCCGCCCAAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGG
1 AAGCCTGCTAGGCACGAAG--GCCCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGG
242844865 CCCGAATACACATCATCGGCACG
64 CCCGAATACACATCA-CGGCACG
242844888 AAGCCTGCTAGGCACGAAGG-CCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
242844952 CGAATACACATCAC-GCACG
66 CGAATACACATCACGGCACG
*
242844971 AAGCCTGCTA-GCACGAAGGCCCCAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCC
1 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
*
242845035 CCAATACACATCAC
66 CGAATACACATCAC
242845049 CGAGTTTCAT
Statistics
Matches: 233, Mismatches: 5, Indels: 24
0.89 0.02 0.09
Matches are distributed among these distances:
82 9 0.04
83 71 0.30
84 1 0.00
85 56 0.24
86 11 0.05
87 21 0.09
88 19 0.08
89 1 0.00
90 6 0.03
91 4 0.02
92 6 0.03
93 28 0.12
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.11
Consensus pattern (85 bp):
AAGCCTGCTAGGCACGAAGGCCCCAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCC
CGAATACACATCACGGCACG
Found at i:242849352 original size:40 final size:39
Alignment explanation
Indices: 242849240--242849395 Score: 163
Period size: 39 Copynumber: 4.0 Consensus size: 39
242849230 GTCTTAGCCC
* *
242849240 ATAACTCGCACGAA-TGCCTTCGGGCTTAGCCCGGATAGA
1 ATAACTAGCAC-AATTGCCTTCGGGCTTAGCCCGGATATA
* *
242849279 ATAACTCGCACGA-TGCCTTCGGGCCTTAGCCCGGATATA
1 ATAACTAGCACAATTGCCTTCGGG-CTTAGCCCGGATATA
** *
242849318 ACCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 ATAACTAGCACAATTGCCTTCGGG-CTTAGCCCGGATATA
** * * *
242849358 ATTTCCAGCATAATTGTCTTCGGGCTTAGCCCGGATAT
1 ATAACTAGCACAATTGCCTTCGGGCTTAGCCCGGATAT
242849396 CATTCAATTT
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 11 0.11
39 47 0.47
40 42 0.42
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
ATAACTAGCACAATTGCCTTCGGGCTTAGCCCGGATATA
Found at i:242850242 original size:17 final size:19
Alignment explanation
Indices: 242850219--242850264 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242850209 AAGAAGCATG
242850219 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242850237 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242850255 AATCATGCTC
1 AATCATGCTC
242850265 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242857256 original size:40 final size:40
Alignment explanation
Indices: 242857211--242857377 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
242857201 CGGAATATAA
242857211 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
242857251 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
242857291 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
242857331 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
242857370 CCGGATAT
1 CCGGATAT
242857378 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:242857361 original size:80 final size:79
Alignment explanation
Indices: 242857211--242857377 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
242857201 CGGAATATAA
* *
242857211 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
242857276 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
242857291 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
242857353 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
242857370 CCGGATAT
1 CCGGATAT
242857378 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:242858225 original size:17 final size:19
Alignment explanation
Indices: 242858202--242858247 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
242858192 AAGAAGCATG
242858202 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
242858220 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
242858238 AATCATGCTC
1 AATCATGCTC
242858248 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:242861674 original size:27 final size:28
Alignment explanation
Indices: 242861618--242861687 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
242861608 AAATTTGTAC
242861618 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
242861646 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
242861673 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
242861688 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:242861698 original size:27 final size:27
Alignment explanation
Indices: 242861618--242861699 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
242861608 AAATTTGTAC
* *
242861618 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
242861646 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
242861673 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
242861700 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:242869452 original size:27 final size:28
Alignment explanation
Indices: 242869396--242869465 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
242869386 AAATTTGTAC
242869396 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
242869424 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
242869451 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
242869466 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:242869476 original size:27 final size:27
Alignment explanation
Indices: 242869396--242869477 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
242869386 AAATTTGTAC
* *
242869396 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
242869424 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
242869451 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
242869478 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:242872565 original size:31 final size:31
Alignment explanation
Indices: 242872527--242872590 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
242872517 CCTTTTCATA
242872527 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
242872558 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
242872589 TT
1 TT
242872591 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:242872828 original size:24 final size:24
Alignment explanation
Indices: 242872782--242872899 Score: 145
Period size: 23 Copynumber: 5.0 Consensus size: 24
242872772 GCTTTATCAT
*
242872782 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
242872807 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
242872831 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
242872854 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
242872878 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
242872900 TCACTTCCTC
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
23 39 0.46
24 32 0.38
25 13 0.15
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:242872861 original size:47 final size:48
Alignment explanation
Indices: 242872782--242872899 Score: 163
Period size: 47 Copynumber: 2.5 Consensus size: 48
242872772 GCTTTATCAT
*
242872782 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGG-CATAAGCCCTTTCA
*
242872831 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
242872878 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
242872900 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
46 18 0.28
47 26 0.40
48 9 0.14
49 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:242872975 original size:20 final size:20
Alignment explanation
Indices: 242872950--242873007 Score: 93
Period size: 18 Copynumber: 3.0 Consensus size: 20
242872940 TATGATTACC
242872950 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
242872970 TCATGTG--TATCATACATT
1 TCATGTGCATATCATACATA
242872988 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
242873008 CCATATTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 17 0.50
20 17 0.50
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:242873082 original size:25 final size:25
Alignment explanation
Indices: 242873050--242873097 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
242873040 ATACATAAAC
* * *
242873050 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
242873075 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
242873098 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:242881093 original size:24 final size:24
Alignment explanation
Indices: 242881047--242881106 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
242881037 GCTTTATCAT
* *
242881047 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCCAAGCCTCTTTCA
242881072 ATAACTGGGGCCAAAGCC-CTTTCA
1 ATAACTGGGGCC-AAGCCTCTTTCA
242881096 ATAACTGGGGC
1 ATAACTGGGGC
242881107 ATAAGCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 20 0.62
25 12 0.38
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (24 bp):
ATAACTGGGGCCAAGCCTCTTTCA
Found at i:242881121 original size:30 final size:30
Alignment explanation
Indices: 242881085--242881142 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
242881075 ACTGGGGCCA
242881085 AAGCCCTT-TCAATAACTGGGGCATAAGCAT
1 AAGCCCTTAT-AATAACTGGGGCATAAGCAT
*
242881115 AAGCCCTTATGATAACTGGGGCATAAGC
1 AAGCCCTTATAATAACTGGGGCATAAGC
242881143 CCTTTTTCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (30 bp):
AAGCCCTTATAATAACTGGGGCATAAGCAT
Found at i:242881224 original size:20 final size:20
Alignment explanation
Indices: 242881199--242881258 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
242881189 TATGATTACC
242881199 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
242881219 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
242881239 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
242881259 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:242881333 original size:25 final size:25
Alignment explanation
Indices: 242881301--242881348 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
242881291 ATACATAAAC
* * *
242881301 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
242881326 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
242881349 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:242888501 original size:118 final size:118
Alignment explanation
Indices: 242888293--242888529 Score: 431
Period size: 118 Copynumber: 2.0 Consensus size: 118
242888283 CAAGAACTAT
*
242888293 AGAAGCATCTGGCGTGGTTAAATTGGTATAGAACTCTCATATTGAATCCTCTTCAGGCAATGATC
1 AGAAGCATCTGGCGTGGTTAAATTGGCATAGAACTCTCATATTGAATCCTCTTCAGGCAATGATC
*
242888358 GTGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTGAC
66 GCGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTGAC
*
242888411 AGAAGCATCTGGCGTGGTTAAATTGGCATAGAACTCTGATATT-AATTCCTCTTCAGGCAATGAT
1 AGAAGCATCTGGCGTGGTTAAATTGGCATAGAACTCTCATATTGAA-TCCTCTTCAGGCAATGAT
242888475 CGCGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTGAC
65 CGCGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTGAC
242888529 A
1 A
242888530 AAGGCATAAT
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
117 2 0.02
118 113 0.98
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (118 bp):
AGAAGCATCTGGCGTGGTTAAATTGGCATAGAACTCTCATATTGAATCCTCTTCAGGCAATGATC
GCGCGTCACAAAATTGATTCCAACTTAAGGCCTTAATTATTTTCTAAATTGAC
Found at i:242891490 original size:40 final size:39
Alignment explanation
Indices: 242891454--242891559 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 39
242891444 CCGCACAAAG
*
242891454 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* *
242891494 GCCTTCGGGCTTAGCCCTGGGTACACACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCC-GGATA-TCACAATTTGCACAATT
242891535 GCCTTC-GGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
242891560 TTCGAACATT
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.05
39 11 0.19
40 23 0.39
41 22 0.37
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:242897106 original size:40 final size:39
Alignment explanation
Indices: 242896938--242897117 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
242896928 AGAAATTGAA
* *
242896938 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
242896978 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
242897018 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
242897058 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
242897098 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
242897118 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:242904899 original size:39 final size:39
Alignment explanation
Indices: 242904855--242904966 Score: 147
Period size: 39 Copynumber: 2.9 Consensus size: 39
242904845 ATATGCTAAT
*
242904855 TATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTAGC
* *
242904894 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAGTTGT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAGTAGC
* *
242904933 TAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCA
242904967 AATCGTGATA
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
39 51 0.78
40 14 0.22
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTAGC
Found at i:242915906 original size:17 final size:18
Alignment explanation
Indices: 242915884--242915918 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
242915874 GATATGATAC
*
242915884 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
242915901 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
242915919 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:242916206 original size:22 final size:21
Alignment explanation
Indices: 242916171--242916246 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
242916161 AAAAGGTATC
* *
242916171 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
242916192 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
242916215 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
242916234 TGC-AATCATATCT
1 TACAAATCATATCT
242916247 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:242916222 original size:17 final size:19
Alignment explanation
Indices: 242916207--242916275 Score: 117
Period size: 17 Copynumber: 3.8 Consensus size: 19
242916197 AATCATATCT
242916207 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
242916226 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
242916244 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
242916261 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
242916276 ATTGAAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.34
18 16 0.34
19 15 0.32
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:242920041 original size:46 final size:46
Alignment explanation
Indices: 242919991--242920166 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
242919981 TGTTTGGGCA
242919991 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
242920037 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
242920082 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
242920130 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
242920167 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:242920146 original size:93 final size:93
Alignment explanation
Indices: 242919987--242920158 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
242919977 AGGATGTTTG
* *
242919987 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
242920052 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
242920080 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
242920145 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
242920159 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:242923726 original size:41 final size:41
Alignment explanation
Indices: 242923681--242923808 Score: 111
Period size: 41 Copynumber: 3.1 Consensus size: 41
242923671 TGAAAGATAA
242923681 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * * * * * * *
242923722 ATGTAGACAAGAG-AGC-TAGAGAGA-GCTACGTGAAAGATA-A
1 ATGTAG-CTAG-GTCGCAT-GCGTGATTCCAAGTGAAGGACACC
242923762 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
242923803 ATGTAG
1 ATGTAG
242923809 ACAAGAGAGC
Statistics
Matches: 60, Mismatches: 20, Indels: 14
0.64 0.21 0.15
Matches are distributed among these distances:
38 1 0.02
39 9 0.15
40 17 0.28
41 23 0.38
42 9 0.15
43 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:242923753 original size:81 final size:82
Alignment explanation
Indices: 242923660--242923825 Score: 325
Period size: 81 Copynumber: 2.0 Consensus size: 82
242923650 CATGTAGACA
242923660 AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
1 AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
242923725 TAGACAAGAGAGCTA-G
66 TAGACAAGAGAGCTACG
242923741 AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
1 AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
242923806 TAGACAAGAGAGCTACG
66 TAGACAAGAGAGCTACG
242923823 AGA
1 AGA
242923826 CAAATCGGTT
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
81 80 0.95
82 4 0.05
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (82 bp):
AGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
TAGACAAGAGAGCTACG
Found at i:242925884 original size:14 final size:15
Alignment explanation
Indices: 242925835--242925884 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
242925825 GTATCTTGAG
*
242925835 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
242925850 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
242925865 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
242925879 TTTCTT
1 TTTCTT
242925885 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:242927294 original size:46 final size:46
Alignment explanation
Indices: 242927244--242927419 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
242927234 TATTTGGGCA
242927244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
242927290 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
242927337 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
242927383 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
242927420 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:242927399 original size:93 final size:93
Alignment explanation
Indices: 242927240--242927411 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
242927230 TGGATATTTG
* *
242927240 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
242927305 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
242927333 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
242927398 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
242927412 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:242932492 original size:25 final size:25
Alignment explanation
Indices: 242932463--242932510 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
242932453 CCTTATAATG
* * *
242932463 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
242932488 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
242932511 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:242932591 original size:11 final size:11
Alignment explanation
Indices: 242932558--242932611 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
242932548 TATGGTATGT
242932558 ATGATATGCAC
1 ATGATATGCAC
*
242932569 ATGA-ATG--T
1 ATGATATGCAC
242932577 ATGATATGCAC
1 ATGATATGCAC
*
242932588 ATGATATG--T
1 ATGATATGCAC
242932597 ATGATATGCAC
1 ATGATATGCAC
242932608 ATGA
1 ATGA
242932612 GTAATCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:242932598 original size:20 final size:20
Alignment explanation
Indices: 242932553--242932611 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
242932543 ATAAATATGG
242932553 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
242932573 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
242932592 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
242932612 GTAATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:242932688 original size:24 final size:24
Alignment explanation
Indices: 242932661--242932779 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
242932651 GAGGAAGTGA
*
242932661 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
242932685 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
242932708 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
242932732 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
242932756 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
242932780 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:242932730 original size:47 final size:48
Alignment explanation
Indices: 242932661--242932779 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
242932651 GAGGAAGTGA
242932661 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
242932708 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
242932756 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
242932780 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:242933006 original size:31 final size:31
Alignment explanation
Indices: 242932971--242933039 Score: 138
Period size: 31 Copynumber: 2.2 Consensus size: 31
242932961 CGTTTACAGT
242932971 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
242933002 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
242933033 AAAGGCT
1 AAAGGCT
242933040 AGTATTATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:242940637 original size:20 final size:20
Alignment explanation
Indices: 242940589--242940650 Score: 99
Period size: 20 Copynumber: 3.0 Consensus size: 20
242940579 ATTTTGATAA
242940589 ATATGTATGTATGATGCACATG
1 ATATGTATG-AT-ATGCACATG
242940611 A-ATGTATGATATGCACATG
1 ATATGTATGATATGCACATG
242940630 ATATGTATGATATGCACATG
1 ATATGTATGATATGCACATG
242940650 A
1 A
242940651 GTAATCATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 10 0.26
20 21 0.54
21 7 0.18
22 1 0.03
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ATATGTATGATATGCACATG
Found at i:242940793 original size:44 final size:45
Alignment explanation
Indices: 242940699--242940820 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 45
242940689 GGAGGAAGTG
*
242940699 AAAAGGGCTTATG--CCAGTTATCAAAGGGCTTATGCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTAT
242940742 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCA-TTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATG-CCCAGTTAT
* *
242940788 -TAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCT
242940821 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
44 32 0.46
45 6 0.09
46 28 0.40
47 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (45 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCAGTTAT
Found at i:242940812 original size:22 final size:23
Alignment explanation
Indices: 242940699--242940835 Score: 160
Period size: 23 Copynumber: 6.0 Consensus size: 23
242940689 GGAGGAAGTG
242940699 AAAAGGGCTTATG--CCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
242940720 CAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
242940742 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
242940766 AAAAGGGCTTATGCCCCA-TTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
242940788 -TAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
242940811 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
242940835 A
1 A
242940836 TGATAAGCAG
Statistics
Matches: 101, Mismatches: 7, Indels: 13
0.83 0.06 0.11
Matches are distributed among these distances:
21 27 0.27
22 15 0.15
23 31 0.31
24 18 0.18
25 10 0.10
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:242942961 original size:40 final size:40
Alignment explanation
Indices: 242942917--242943026 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
242942907 TTCACAATTT
* *
242942917 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242942957 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242942997 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
242943027 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:242951009 original size:40 final size:40
Alignment explanation
Indices: 242950965--242951074 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
242950955 TTCACAATTT
* *
242950965 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242951005 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
242951045 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
242951075 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:242955251 original size:29 final size:29
Alignment explanation
Indices: 242955217--242955375 Score: 212
Period size: 29 Copynumber: 5.5 Consensus size: 29
242955207 TACTCGATTT
* * *
242955217 CGCACACTTAGTGCCATGCTATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
242955246 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
242955275 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
242955304 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
242955333 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
242955362 CGCACACTTAGTGC
1 CGCACACTTAGTGC
242955376 AATCTCGTCA
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 112 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:242962666 original size:28 final size:29
Alignment explanation
Indices: 242962601--242962670 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 29
242962591 GTGAATCCGC
*
242962601 CACACTTAGTGCTATATATATTCAGCTCG
1 CACACTTAGTGCTATATATATTCAACTCG
242962630 CACACTTAGTGCTATATA-A-TCAAACTCG
1 CACACTTAGTGCTATATATATTC-AACTCG
242962658 CACACTTAGTGCT
1 CACACTTAGTGCT
242962671 GTACAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.49
29 18 0.46
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (29 bp):
CACACTTAGTGCTATATATATTCAACTCG
Found at i:242966862 original size:29 final size:29
Alignment explanation
Indices: 242966828--242966904 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
242966818 GTGACGAGAT
* *
242966828 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
242966857 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
*
242966886 CGGCACT-GGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
242966905 CGGGGGTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 10 0.24
29 31 0.76
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:242974535 original size:28 final size:29
Alignment explanation
Indices: 242974459--242974535 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
242974449 GTGACGAGAT
*
242974459 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
* *
242974488 TGGCACTAAGTGTGCAAGCTGGAAA-ATA
1 CGGCACTAAGTGTGCGAGCTGGAAATATA
**
242974516 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
242974536 CGAGGGTATG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 19 0.46
29 22 0.54
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:242977378 original size:24 final size:24
Alignment explanation
Indices: 242977351--242977397 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
242977341 AGGTAAGTAA
**
242977351 AGGATTTAGGAGCTGATAAGGGAT
1 AGGATTTAGGAGCAAATAAGGGAT
242977375 AGGATTTAGGAGCAAATAAGGGA
1 AGGATTTAGGAGCAAATAAGGGA
242977398 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.04, G:0.36, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAAATAAGGGAT
Found at i:242978394 original size:8 final size:8
Alignment explanation
Indices: 242978381--242978412 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
242978371 CTAGATCGGC
242978381 AAAAGCCG
1 AAAAGCCG
242978389 AAAAGCCG
1 AAAAGCCG
*
242978397 AAATGCCG
1 AAAAGCCG
242978405 AAAAGCCG
1 AAAAGCCG
242978413 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:242978699 original size:28 final size:26
Alignment explanation
Indices: 242978659--242978721 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 26
242978649 ATGTACTAGA
*
242978659 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACC--T
242978687 ATACCCCTATGTATGCAAAATGACCT
1 ATACCCCTATGTATGCAAAATGACCT
242978713 ATACCCCTA
1 ATACCCCTA
242978722 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 10 0.29
28 24 0.71
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.29
Consensus pattern (26 bp):
ATACCCCTATGTATGCAAAATGACCT
Found at i:242978868 original size:28 final size:27
Alignment explanation
Indices: 242978827--242978914 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 27
242978817 AGGAAGCGTC
242978827 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
242978855 CTGGTGGCCCTG-C-CATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
242978880 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
242978909 CTGGTG
1 CTGGTG
242978915 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
25 19 0.37
26 4 0.08
27 2 0.04
28 19 0.37
29 7 0.14
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:242978925 original size:29 final size:28
Alignment explanation
Indices: 242978837--242978925 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 28
242978827 CTGGTGGCTA
* * *
242978837 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
242978865 TG-C-C-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
242978890 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
242978919 TGTCACA
1 TGCCACA
242978926 TTTTCTGTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 20 0.40
26 2 0.04
27 2 0.04
28 11 0.22
29 15 0.30
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:242980024 original size:11 final size:10
Alignment explanation
Indices: 242979996--242980029 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
242979986 AGCCTGTAAG
242979996 TATTCTGAAT
1 TATTCTGAAT
*
242980006 TTTTCTGAAT
1 TATTCTGAAT
242980016 ATATTCTGAAT
1 -TATTCTGAAT
242980027 TAT
1 TAT
242980030 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Done.