Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 765 of 770
Found at i:242986487 original size:28 final size:28
Alignment explanation
Indices: 242986447--242986511 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
242986437 ATGTACTAGA
*
242986447 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
242986475 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
242986503 ATACCCCTA
1 ATACCCCTA
242986512 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:242986674 original size:27 final size:27
Alignment explanation
Indices: 242986616--242986705 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
242986606 AGGAAGCGTC
242986616 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
242986644 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
242986671 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
242986700 CTGGTG
1 CTGGTG
242986706 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:242986724 original size:55 final size:56
Alignment explanation
Indices: 242986616--242986730 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
242986606 AGGAAGCGTC
* *
242986616 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
242986671 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
242986727 CTGG
1 CTGG
242986731 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:242988672 original size:34 final size:34
Alignment explanation
Indices: 242988633--242988706 Score: 130
Period size: 34 Copynumber: 2.2 Consensus size: 34
242988623 NNNNNNNNNN
*
242988633 AAAAAAGAAAAAAAAAAAACCTAACCCAAAAAAA
1 AAAAAAGAAAAAAAAAAAACCTAACCAAAAAAAA
*
242988667 AAAAAAGAAAAAAGAAAAACCTAACCAAAAAAAA
1 AAAAAAGAAAAAAAAAAAACCTAACCAAAAAAAA
242988701 AAAAAA
1 AAAAAA
242988707 CCCTAGCCAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.81, C:0.12, G:0.04, T:0.03
Consensus pattern (34 bp):
AAAAAAGAAAAAAAAAAAACCTAACCAAAAAAAA
Found at i:242989208 original size:24 final size:21
Alignment explanation
Indices: 242989181--242989242 Score: 58
Period size: 24 Copynumber: 2.9 Consensus size: 21
242989171 TTTTATATAT
*
242989181 ATTATGTATATATTTTTTAATG
1 ATTATGTATATATTTCTT-ATG
242989203 CCATTA-GTTATATATTTCTTATG
1 --ATTATG-TATATATTTCTTATG
242989226 -TTATGTATATA-TTCTTA
1 ATTATGTATATATTTCTTA
242989243 AATACTATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 6 0.17
20 9 0.26
21 1 0.03
23 4 0.11
24 15 0.43
ACGTcount: A:0.29, C:0.06, G:0.08, T:0.56
Consensus pattern (21 bp):
ATTATGTATATATTTCTTATG
Found at i:242989253 original size:2 final size:2
Alignment explanation
Indices: 242989248--242989274 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
242989238 TCTTAAATAC
242989248 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
242989275 TTTAAATACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:242989381 original size:2 final size:2
Alignment explanation
Indices: 242989362--242989400 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
242989352 AGTGTATTAT
* *
242989362 TA TA TT TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
242989401 TTGTACATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:242991270 original size:12 final size:12
Alignment explanation
Indices: 242991250--242991285 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
242991240 AGTCATTTGA
242991250 CATTCATGCATT
1 CATTCATGCATT
*
242991262 CATTTATGCATT
1 CATTCATGCATT
*
242991274 CATTCATTCATT
1 CATTCATGCATT
242991286 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:242998283 original size:71 final size:70
Alignment explanation
Indices: 242998141--242998304 Score: 215
Period size: 71 Copynumber: 2.3 Consensus size: 70
242998131 GAGTTAAGCC
* ** * *
242998141 TTTTTAATTT-TGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTGAGCCTCGGGGCACGCT
1 TTTTCAATTTCTG-TTTTCAATTTCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGGCACGCT
242998205 GAGGTA
65 GAGGTA
* * *
242998211 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTCTGT-TTTCAATTTCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGGGCACGC
242998276 TGA-GTA
64 TGAGGTA
242998282 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTCTGTTTTCAATTT
242998305 ACGTTGTTCA
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
70 18 0.22
71 46 0.56
72 18 0.22
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (70 bp):
TTTTCAATTTCTGTTTTCAATTTCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGGCACGCTG
AGGTA
Found at i:242998408 original size:137 final size:139
Alignment explanation
Indices: 242998238--242998840 Score: 964
Period size: 137 Copynumber: 4.5 Consensus size: 139
242998228 TTAATTTCAA
242998238 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGA-GTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
242998302 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAA-TTCTAC-TTT
66 TTTACGTTGTT-AAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
242998365 TCAAAATCAG
130 TCAAAATCAG
242998375 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
242998440 TTTACGTTGTTAAGAATCAACTCATATTGC--GA-------TGAATCTTTTAATTTC-AC-TTTT
66 TTTACGTTGTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
242998494 C-AAATCAG
131 CAAAATCAG
*
242998502 CTCATATTGCAAGAGGTGAGTT-AGCCTCAGGTCACGCT-AGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
242998565 TTTACGTTGTTAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTTACGTTGTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
242998630 CAAAATCAG
131 CAAAATCAG
242998639 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
242998704 ATTA-GTTGTT-AGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
66 TTTACGTTGTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
242998767 CAAAA--A-
131 CAAAATCAG
242998773 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
242998837 TCAA
62 TCAA
242998841 AAAAAAAATT
Statistics
Matches: 440, Mismatches: 6, Indels: 40
0.91 0.01 0.08
Matches are distributed among these distances:
125 55 0.12
126 16 0.04
127 30 0.07
128 18 0.04
129 3 0.01
133 2 0.00
134 48 0.11
135 5 0.01
136 28 0.06
137 151 0.34
138 56 0.13
139 28 0.06
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (139 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTT
CAAAATCAG
Found at i:242998969 original size:69 final size:69
Alignment explanation
Indices: 242998845--242998987 Score: 243
Period size: 69 Copynumber: 2.1 Consensus size: 69
242998835 TTTCAAAAAA
*
242998845 AAAATTTAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
1 AAAATTCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
*
242998910 TTTC
66 GTTC
*
242998914 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-TTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
242998978 TGTTC
65 TGTTC
242998983 AAAAT
1 AAAAT
242998988 GAGTTGAGCC
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 43 0.61
70 27 0.39
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (69 bp):
AAAATTCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCT
GTTC
Found at i:242999035 original size:48 final size:48
Alignment explanation
Indices: 242998936--242999027 Score: 161
Period size: 48 Copynumber: 2.0 Consensus size: 48
242998926 ATATTGCGAG
*
242998936 AAATGAGTTGAGCCTCAAGACACGTTGATTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGATTAATTTCAATTTCTGTTCA
242998984 AAATGAGTTGAGCCTCAAGACACGCTGA-TAA-TTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGATTAATTTCAATTTCTGTT
242999028 TTCAAAATTC
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 13 0.30
47 3 0.07
48 27 0.63
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (48 bp):
AAATGAGTTGAGCCTCAAGACACGCTGATTAATTTCAATTTCTGTTCA
Found at i:242999074 original size:117 final size:117
Alignment explanation
Indices: 242998867--242999098 Score: 362
Period size: 117 Copynumber: 2.0 Consensus size: 117
242998857 ATATTGCGAG
*
242998867 AATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTTTTCAAAATTCAACTCATATTG
1 AATGAGTTGAGCCTCAAGACACGCTGA-GTAATTTCAATTTCTTTTCAAAATTCAACTCATATTG
* *
242998932 CGAGAAATGAGTTGAGCCTCAAGACACGTTGA-TTAATTTCAATTTCTGTTCAA
65 CGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTCAATTTCTGTTCAA
242998985 AATGAGTTGAGCCTCAAGACACGCTGA-TAA-TTCAATTTCTGTTTTCAAAATTCAACTCATATT
1 AATGAGTTGAGCCTCAAGACACGCTGAGTAATTTCAATTTC--TTTTCAAAATTCAACTCATATT
* *
242999048 GCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTCAATTTCTGTT
64 GCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTT
242999099 TTTCAAAAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
115 9 0.08
116 3 0.03
117 67 0.63
118 27 0.25
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (117 bp):
AATGAGTTGAGCCTCAAGACACGCTGAGTAATTTCAATTTCTTTTCAAAATTCAACTCATATTGC
GAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTTCAA
Found at i:242999217 original size:72 final size:72
Alignment explanation
Indices: 242998984--242999248 Score: 358
Period size: 77 Copynumber: 3.6 Consensus size: 72
242998974 TTTCTGTTCA
* * *
242998984 AAATGAGTTGAGCCTCAAGACACGCTGA--TAATTCAATTTCTGTTTT-CAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTTTTAAAAAAATCAACTCATA
242999046 TTGCGAG
66 TTGCGAG
* *
242999053 AAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTCAATTTCTGTTTTTCAAAAAAAAAATCAAC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTG-TTTT----AAAAAAATCAAC
*
242999118 TCATATTGTGAG
61 TCATATTGCGAG
*
242999130 AAATGAGTTGAGCCTC-AGACATGCTGAGGTATTTTCAATTTCTGTTTTAAAAAAATCAACTCAT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTA-TTTCAATTTCTGTTTTAAAAAAATCAACTCAT
242999194 ATTGCGAG
65 ATTGCGAG
**
242999202 AGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTCAATTTCTGTT
242999249 GTCAAANNNN
Statistics
Matches: 174, Mismatches: 11, Indels: 18
0.86 0.05 0.09
Matches are distributed among these distances:
69 26 0.15
71 13 0.07
72 41 0.24
73 27 0.16
74 1 0.01
76 19 0.11
77 47 0.27
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (72 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTTTTAAAAAAATCAACTCATA
TTGCGAG
Found at i:242999254 original size:149 final size:146
Alignment explanation
Indices: 242998984--242999254 Score: 402
Period size: 149 Copynumber: 1.8 Consensus size: 146
242998974 TTTCTGTTCA
* *
242998984 AAATGAGTTGAGCCTCAAGACACGCTGATAATTCAATTTCTGTTTTCAAAATTCAACTCATATTG
1 AAATGAGTTGAGCCTCAAGACACGCTGATAATTCAATTTCTGTTTTAAAAAATCAACTCATATTG
* * *
242999049 CGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTCAATTTCTGTTTTTCAAAAAAAAAAT
66 CGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTTTGTCAAAAAAAAAAT
242999114 CAACTCATATTGTGAG
131 CAACTCATATTGTGAG
* *
242999130 AAATGAGTTGAGCCTC-AGACATGCTGAGGTATTTTCAATTTCTGTTTTAAAAAAATCAACTCAT
1 AAATGAGTTGAGCCTCAAGACACGCTGA--TA-ATTCAATTTCTGTTTT-AAAAAATCAACTCAT
**
242999194 ATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAA
62 ATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTCAATTTCTGTTTGTCAAA
242999255 NNNNNNNNNN
Statistics
Matches: 111, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
145 10 0.09
146 16 0.14
147 2 0.02
148 15 0.14
149 55 0.50
150 13 0.12
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (146 bp):
AAATGAGTTGAGCCTCAAGACACGCTGATAATTCAATTTCTGTTTTAAAAAATCAACTCATATTG
CGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTCAATTTCTGTTTGTCAAAAAAAAAAT
CAACTCATATTGTGAG
Found at i:243001812 original size:42 final size:43
Alignment explanation
Indices: 243001766--243001936 Score: 193
Period size: 42 Copynumber: 3.8 Consensus size: 43
243001756 TGTAACCCGC
243001766 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGTTCGCAT
*
243001808 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAT-GCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGTTCG-C-A--T
* *** *
243001854 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG---TTCGCAT
*
243001901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
243001937 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
42 35 0.32
43 3 0.03
44 1 0.01
46 33 0.31
47 32 0.30
49 1 0.01
50 2 0.02
51 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (43 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGTTCGCAT
Found at i:243001929 original size:93 final size:89
Alignment explanation
Indices: 243001774--243001941 Score: 282
Period size: 93 Copynumber: 1.8 Consensus size: 89
243001764 GCCCATAAGT
243001774 GAACTCGGACTCAACTCAACGAGCTCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAGCTCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
243001839 CTCGGATGCCTAGTTACATCTCTC
66 CTCGGATGCCTAGTTACATCTCTC
*
243001863 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTC-G---TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
243001928 CGAGTTCGGATGCC
62 CGAGCTCGGATGCC
243001942 CAAATTCCTA
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
89 25 0.34
90 1 0.01
93 47 0.64
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (89 bp):
GAACTCGGACTCAACTCAACGAGCTCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGAG
CTCGGATGCCTAGTTACATCTCTC
Found at i:243007428 original size:93 final size:90
Alignment explanation
Indices: 243007272--243007440 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 90
243007262 GCCCATAAGT
243007272 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
243007337 GCTCGGATGCCTAGTTACATCTCTC
66 GCTCGGATGCCTAGTTACATCTCTC
*
243007362 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG---TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
243007427 CGAGTTCGGATGCC
63 CGAGCTCGGATGCC
243007441 CAAATATCCT
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
90 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GCTCGGATGCCTAGTTACATCTCTC
Found at i:243007455 original size:46 final size:44
Alignment explanation
Indices: 243007264--243007442 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 44
243007254 TGTAACCCGC
* *
243007264 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT
*
243007307 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--T
* *** * * *
243007353 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAT
*
243007400 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA
243007443 AATATCCTAG
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
43 36 0.32
44 8 0.07
46 33 0.29
47 32 0.28
49 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT
Found at i:243013215 original size:29 final size:29
Alignment explanation
Indices: 243013171--243013292 Score: 138
Period size: 29 Copynumber: 4.2 Consensus size: 29
243013161 CGAGATTGGC
* *
243013171 GTGTGCGT-CTGGAAATATATGGCACTAA
1 GTGTGCATGCTGGAAAAATATGGCACTAA
* * *
243013199 GTGTGCGTGCTGGAAATATAAGGCACTAA
1 GTGTGCATGCTGGAAAAATATGGCACTAA
* *
243013228 GTGTGCATGCTGGAAAAATATGACACTAT
1 GTGTGCATGCTGGAAAAATATGGCACTAA
* * **
243013257 GTGTGCAAGCTGGAAAAATACGGCACTGG
1 GTGTGCATGCTGGAAAAATATGGCACTAA
243013286 GTGTGCA
1 GTGTGCA
243013293 AGCTCGAAGG
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 8 0.10
29 74 0.90
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (29 bp):
GTGTGCATGCTGGAAAAATATGGCACTAA
Found at i:243013318 original size:28 final size:29
Alignment explanation
Indices: 243013182--243013319 Score: 98
Period size: 29 Copynumber: 4.8 Consensus size: 29
243013172 TGTGCGTCTG
* * * ** *
243013182 GAAATATATGGCACTAAGTGTGCGTGCTG
1 GAAAAATACGGCACTATGTGTGCAAGCTC
* * * * *
243013211 GAAATATAAGGCACTAAGTGTGCATGCTG
1 GAAAAATACGGCACTATGTGTGCAAGCTC
* * *
243013240 GAAAAATATGACACTATGTGTGCAAGCTG
1 GAAAAATACGGCACTATGTGTGCAAGCTC
**
243013269 GAAAAATACGGCACTGGGTGTGCAAGCTC
1 GAAAAATACGGCACTATGTGTGCAAGCTC
***
243013298 GAAGGGTA-GGCACTATGTGTGC
1 GAAAAATACGGCACTATGTGTGC
243013320 GGGCTTAAAT
Statistics
Matches: 92, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 12 0.13
29 80 0.87
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.23
Consensus pattern (29 bp):
GAAAAATACGGCACTATGTGTGCAAGCTC
Found at i:243014157 original size:18 final size:16
Alignment explanation
Indices: 243014134--243014168 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
243014124 AAATCACTAA
243014134 AAATAGTGAAGTAGAATT
1 AAATAGTG-AGTA-AATT
243014152 AAATAGTGAGTAAATT
1 AAATAGTGAGTAAATT
243014168 A
1 A
243014169 TGAAATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 4 0.24
18 8 0.47
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (16 bp):
AAATAGTGAGTAAATT
Found at i:243020792 original size:27 final size:29
Alignment explanation
Indices: 243020693--243020813 Score: 156
Period size: 29 Copynumber: 4.2 Consensus size: 29
243020683 GTGACGAGAT
*
243020693 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
243020722 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
243020751 AGGCACTAAGTGTGCATGCTGGAAA-A-A
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * * *
243020778 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
243020807 CGGCACT
1 TGGCACT
243020814 GGGTGTGCGA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.27
28 2 0.02
29 58 0.71
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:243020821 original size:56 final size:58
Alignment explanation
Indices: 243020694--243020813 Score: 163
Period size: 56 Copynumber: 2.1 Consensus size: 58
243020684 TGACGAGATT
* * ** *
243020694 GGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
* *
243020752 GGCACTAAGTGTGCATGCTGGAAA-A-ATGACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
243020808 GGCACT
1 GGCACT
243020814 GGGTGTGCGA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
56 31 0.56
57 1 0.02
58 23 0.42
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAATATATGACACTAAGTGTGCAAGCTGGAAAAATAA
Found at i:243026228 original size:47 final size:47
Alignment explanation
Indices: 243026175--243026368 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
243026165 TTAGGATTTT
** * *
243026175 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
243026222 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
243026269 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
243026316 ATGTGGTGAATATGAACATGCATATATATGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
243026363 ATGTGA
1 ATGTGA
243026369 AATATGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:243026275 original size:22 final size:22
Alignment explanation
Indices: 243026204--243026275 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
243026194 GTATATATGA
243026204 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
243026226 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
243026251 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
243026273 GAT
1 GAT
243026276 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:243026324 original size:25 final size:25
Alignment explanation
Indices: 243026249--243026324 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
243026239 ATGCATATAT
243026249 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
243026274 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
243026296 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
243026321 GTGA
1 GTGA
243026325 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:243026402 original size:48 final size:48
Alignment explanation
Indices: 243026338--243026526 Score: 254
Period size: 48 Copynumber: 3.8 Consensus size: 48
243026328 TGAACATGCA
* *
243026338 TATATATGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
243026386 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
243026434 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG----A-A-ATATGTATGAGATATG
*
243026488 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
243026527 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 1 0.01
50 1 0.01
52 1 0.01
53 1 0.01
54 40 0.32
55 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:243026817 original size:37 final size:37
Alignment explanation
Indices: 243026672--243026816 Score: 263
Period size: 37 Copynumber: 3.9 Consensus size: 37
243026662 GGAAATATAT
243026672 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
243026709 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
243026746 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
243026783 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
243026817 TCGTCTGAGC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:243028193 original size:39 final size:40
Alignment explanation
Indices: 243028084--243028469 Score: 631
Period size: 39 Copynumber: 9.8 Consensus size: 40
243028074 GAGAATTGAG
* *
243028084 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
243028124 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
243028164 AGTGATGTATCC-GACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
243028203 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
243028242 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
243028282 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
243028322 AGTGATGTATCC-GACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
243028360 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
243028399 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATT-GTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
243028438 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
243028470 ATCATGCTGG
Statistics
Matches: 332, Mismatches: 10, Indels: 9
0.95 0.03 0.03
Matches are distributed among these distances:
38 30 0.09
39 162 0.49
40 140 0.42
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:243028293 original size:118 final size:120
Alignment explanation
Indices: 243028084--243028469 Score: 631
Period size: 118 Copynumber: 3.3 Consensus size: 120
243028074 GAGAATTGAG
* * *
243028084 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
243028149 AAGAGCATTCGTGCTAGTGATGTATCC-GACTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
243028203 AGTGATGTATCCGGACTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
*
243028267 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
243028322 AGTGATGTATCC-GACTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-CCG
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
*
243028384 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATT-GTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* * * *
243028438 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCA
243028470 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 12, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
116 14 0.06
117 56 0.22
118 125 0.50
119 57 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:243032629 original size:47 final size:47
Alignment explanation
Indices: 243032575--243032768 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
243032565 TTTAGGATTT
** * *
243032575 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
243032622 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
243032669 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
243032716 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
243032763 ATGTGA
1 ATGTGA
243032769 AATATGTATG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:243032675 original size:22 final size:22
Alignment explanation
Indices: 243032604--243032675 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
243032594 GTATATATGA
243032604 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
243032626 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
243032651 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
243032673 GAT
1 GAT
243032676 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:243032724 original size:25 final size:25
Alignment explanation
Indices: 243032649--243032724 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
243032639 ATGCATATAT
243032649 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
243032674 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
243032696 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
243032721 GTGA
1 GTGA
243032725 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:243032804 original size:47 final size:48
Alignment explanation
Indices: 243032737--243032923 Score: 243
Period size: 47 Copynumber: 3.8 Consensus size: 48
243032727 ATGAACATGC
*
243032737 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAAT
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
243032785 ATATATGTGGTAAAG-CGAATGGCTAATGTGAAATATGTATGAGATAT
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
** * * *
243032832 GCATATGTGGTAAAGCTGAATGG-TCAATATGAAATATATATATATGAGATAT
1 ATATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATAT
* *
243032884 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
243032924 GGCGATGTGC
Statistics
Matches: 121, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
47 45 0.37
48 32 0.26
49 1 0.01
50 2 0.02
51 1 0.01
52 39 0.32
53 1 0.01
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
Found at i:243032804 original size:94 final size:93
Alignment explanation
Indices: 243032596--243032815 Score: 257
Period size: 94 Copynumber: 2.3 Consensus size: 93
243032586 GTGAATGTGT
* * * *
243032596 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCG
* *
243032661 AATGGCCAATGTGATGAATGTGAGCATGC
66 AATGGCCAATGTGATAAATGTGAGAAT-C
* * * *
243032690 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCG
*
243032755 AATGGCTAATGTGA-AATATGTATGAGAAAT-
66 AATGGCCAATGTGATAA-ATG--TGAG-AATC
* *
243032785 ATATATGTGGTAAAG-CGAATGGCTAATGTGA
1 ATATATGTGATAAAGCCGAATGGCCAATGTGA
243032816 AATATGTATG
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
93 1 0.01
94 89 0.82
95 12 0.11
96 4 0.04
97 2 0.02
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.26
Consensus pattern (93 bp):
ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGATAAAGCCG
AATGGCCAATGTGATAAATGTGAGAATC
Found at i:243033177 original size:37 final size:37
Alignment explanation
Indices: 243033069--243033177 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
243033059 GGAAATATAT
*
243033069 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
243033106 TCCGGGTAAGACCCGATGACTACTTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
243033143 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
243033178 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:243036975 original size:29 final size:29
Alignment explanation
Indices: 243036885--243037044 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
243036875 ACTCGATTTC
* * **
243036885 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
243036914 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
243036942 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
243036972 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
243037001 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
243037030 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
243037045 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:243039057 original size:27 final size:27
Alignment explanation
Indices: 243039027--243039129 Score: 143
Period size: 27 Copynumber: 3.8 Consensus size: 27
243039017 AGCTGTCACC
*
243039027 ACCCCTGTAGGGTAGAATTATCGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* *
243039054 ACCCTTGTAGGGTAGAAATACCGAAAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
*
243039081 ACCCCTGTAGGGTAGAATTACCGAGAT
1 ACCCCTGTAGGGTAGAATTACCGAAAT
* * *
243039108 ACCCTTGTGGGGTAAAATTACC
1 ACCCCTGTAGGGTAGAATTACC
243039130 ATTTTGCCCC
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
ACCCCTGTAGGGTAGAATTACCGAAAT
Found at i:243039370 original size:27 final size:26
Alignment explanation
Indices: 243039331--243039409 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
243039321 GGAAGCGTTT
*
243039331 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
* *
243039358 TGGTGGCTCTGCCACAATATTTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
243039385 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
243039410 GACCGATCGA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 9 0.20
27 36 0.80
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:243039529 original size:22 final size:22
Alignment explanation
Indices: 243039504--243039555 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
243039494 TTAATAGCTC
243039504 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACCTAAATATGGCTT
* * * *
243039526 TGTGCCATCTTGACTATGGCTT
1 TGTGCCAACCTAAATATGGCTT
*
243039548 CGTGCCAA
1 TGTGCCAA
243039556 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (22 bp):
TGTGCCAACCTAAATATGGCTT
Found at i:243039741 original size:27 final size:27
Alignment explanation
Indices: 243039719--243039787 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
243039709 TAGGTGGGTT
*
243039719 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
243039746 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
243039773 TGTCACGATATCTGT
1 TGCCACAATATCTGT
243039788 TCTAGCTGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:243039938 original size:25 final size:24
Alignment explanation
Indices: 243039910--243040031 Score: 127
Period size: 25 Copynumber: 4.8 Consensus size: 24
243039900 TTGCATTCAC
*
243039910 ATTCTGATACTGATTCTGTCACGTA
1 ATTCTGATTCTGATTCTGTCAC-TA
*
243039935 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTG-T-C----ACTA
* *
243039965 ATTCTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGTCACTA
243039989 ATTCTGATTCTGATTCTGTCAACTA
1 ATTCTGATTCTGATTCTGTC-ACTA
*
243040014 ATTCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
243040032 ATTCTGTTAC
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
24 23 0.27
25 37 0.44
26 1 0.01
27 1 0.01
29 1 0.01
30 19 0.23
31 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (24 bp):
ATTCTGATTCTGATTCTGTCACTA
Found at i:243039946 original size:6 final size:6
Alignment explanation
Indices: 243039935--243040090 Score: 144
Period size: 6 Copynumber: 25.8 Consensus size: 6
243039925 CTGTCACGTA
* *
243039935 ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
243039983 -TTACTG ATTCTG ATTCTG ATTCTG -TCAACTA ATTCTA ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
243040032 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTA
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
243040080 ATTCTG ATTCT
1 ATTCTG ATTCT
243040091 CATTTTGGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 26
0.77 0.07 0.16
Matches are distributed among these distances:
5 10 0.08
6 105 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:243039965 original size:24 final size:24
Alignment explanation
Indices: 243039913--243040000 Score: 106
Period size: 24 Copynumber: 3.6 Consensus size: 24
243039903 CATTCACATT
* * *
243039913 CTGATACTGATTCTGTCACGTAATT
1 CTGATTCTGATTCTGTTAC-TAATA
243039938 CTGATTCTGATTCTGTTACTAATA
1 CTGATTCTGATTCTGTTACTAATA
**
243039962 CTGATTCTGATTCTGATT-CTGTTA
1 CTGATTCTGATTCTG-TTACTAATA
243039986 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
243040001 ATTCTGTCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
24 38 0.67
25 19 0.33
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.45
Consensus pattern (24 bp):
CTGATTCTGATTCTGTTACTAATA
Found at i:243040014 original size:55 final size:54
Alignment explanation
Indices: 243039910--243040061 Score: 216
Period size: 55 Copynumber: 2.8 Consensus size: 54
243039900 TTGCATTCAC
* * * *
243039910 ATTCTGATACTGATTCTGTCACGTAATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTGATTCTGATTCTGTAACTAATACTA
* *
243039965 ATTCTGATTCTGATTCTGTTACTGATTCTGATTCTGATTCTGTCAACTAATTCTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTGATTCTGATTCTGT-AACTAATACTA
243040020 ATTCTGATTCTGATTCTGTTACTAATAT-TGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTGATTCTGATTCTG
243040062 ATTCTGTTAC
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
54 20 0.23
55 67 0.76
56 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (54 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTGATTCTGATTCTGTAACTAATACTA
Found at i:243040052 original size:79 final size:79
Alignment explanation
Indices: 243039910--243040085 Score: 218
Period size: 79 Copynumber: 2.2 Consensus size: 79
243039900 TTGCATTCAC
* * *
243039910 ATTCTGATACTGATTCTGTCACGTAATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
1 ATTCTGATTCTGATTCTGTCACGTAATTCTAATTCTGATTCTGTTACTAATACTAATTCTGATTC
243039975 TGATTCTG-TTACTG
66 TGATTCTGATT-CTG
**
243039989 ATTCTGATTCTGATTCTGTCAAC-TAATTCTAATTCTGATTCTGATT-CTGTTACTAATAT-TGA
1 ATTCTGATTCTGATTCTGTC-ACGTAATTCTAATTCTGATTCTG-TTACTAATACTAAT-TCTGA
243040051 TTCTGATTCTGATTCTG
63 TTCTGATTCTGATTCTG
*
243040068 -TTACTGATTCTAATTCTG
1 ATT-CTGATTCTGATTCTG
243040086 ATTCTCATTT
Statistics
Matches: 86, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
78 2 0.02
79 77 0.90
80 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (79 bp):
ATTCTGATTCTGATTCTGTCACGTAATTCTAATTCTGATTCTGTTACTAATACTAATTCTGATTC
TGATTCTGATTCTG
Found at i:243040108 original size:30 final size:30
Alignment explanation
Indices: 243039933--243040090 Score: 202
Period size: 30 Copynumber: 5.4 Consensus size: 30
243039923 TTCTGTCACG
*
243039933 TAATTCTGATTCTGATTCTGTTACTAATAC
1 TAATTCTGATTCTGATTCTGTTACTAATTC
* *
243039963 TGATTCTGATTCTGATTCTGTTACTGATTC
1 TAATTCTGATTCTGATTCTGTTACTAATTC
* *
243039993 TGATTCTGATTCTG--TC---AACTAATTC
1 TAATTCTGATTCTGATTCTGTTACTAATTC
243040018 TAATTCTGATTCTGATTCTGTTACTAATAT-
1 TAATTCTGATTCTGATTCTGTTACTAAT-TC
* *
243040048 TGATTCTGATTCTGATTCTGTTACTGATTC
1 TAATTCTGATTCTGATTCTGTTACTAATTC
243040078 TAATTCTGATTCT
1 TAATTCTGATTCT
243040091 CATTTTGGTT
Statistics
Matches: 111, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
25 20 0.18
27 2 0.02
28 2 0.02
29 1 0.01
30 85 0.77
31 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (30 bp):
TAATTCTGATTCTGATTCTGTTACTAATTC
Found at i:243042196 original size:81 final size:81
Alignment explanation
Indices: 243042099--243042602 Score: 501
Period size: 81 Copynumber: 6.1 Consensus size: 81
243042089 CCAAAGTACT
* * *
243042099 CTCGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCGATTTATA
1 CTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACA
*
243042164 GAATTACTGTTTTACC
66 GAATTACCGTTTTACC
* * *
243042180 CTCGATTTGTAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACA
1 CTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACA
*
243042245 GAATTACC-ATTTACC
66 GAATTACCGTTTTACC
* ** *
243042260 CTCGTTTTTACCCTCAGTTTAAGAATTACTATTTTACCCTC-GATTTATAGAATTACCGTTTTAC
1 CTCG--ATT----T-A---TAA-AATTACCGTTTTACCCTCAG-TTTACAGAATTACCGTTTTAC
* ** *
243042324 CCTCTATTTGTAAAATTACCGTTTTACC
54 CCTCGATTTACAGAATTACCGTTTTACC
*** * **
243042352 CTCGATTTACCGAATTACCGTTTTACCCTCAGGTTACAGAATTACTATTTTACCCTCGATTTACA
1 CTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACA
**
243042417 GAATTATTGTTTTACC
66 GAATTACCGTTTTACC
* * * * * *
243042433 CTC-AGTTTACAGAATTACTGTTTTACCCTCGATTTTATAGAATTACCGTTTTACCCTCGATTTG
1 CTCGA-TTTATAAAATTACCGTTTTACCCTC-AGTTTACAGAATTACCGTTTTACCCTCGATTTA
* *
243042497 TAAAATTACCGTTTTACC
64 CAGAATTACCGTTTTACC
* * * * * *
243042515 CTTGATTTATAGAATTACTGGTTTACCCTCAGTTTACAAAATTATCGTTTTACCCTCGATTTACA
1 CTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACA
*
243042580 GAATTGCCGTTTTACC
66 GAATTACCGTTTTACC
*
243042596 CTTGATT
1 CTCGATT
243042603 GTGAAATTAC
Statistics
Matches: 349, Mismatches: 57, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
80 11 0.03
81 197 0.56
82 69 0.20
83 1 0.00
85 1 0.00
86 2 0.01
90 6 0.02
91 52 0.15
92 10 0.03
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.41
Consensus pattern (81 bp):
CTCGATTTATAAAATTACCGTTTTACCCTCAGTTTACAGAATTACCGTTTTACCCTCGATTTACA
GAATTACCGTTTTACC
Found at i:243042243 original size:38 final size:37
Alignment explanation
Indices: 243042228--243042306 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 37
243042218 GAATTACCAT
*
243042228 TTTACCCTCGATTTACAGAATTACCATTTACCCTCGTT
1 TTTACCCTCGATTTA-AGAATTACCATTTACCCTCGTA
*
243042266 TTTACCCTC-AGTTTAAGAATTACTATTTTACCCTCG-A
1 TTTACCCTCGA-TTTAAGAATTACCA-TTTACCCTCGTA
243042303 TTTA
1 TTTA
243042307 TAGAATTACC
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
37 14 0.38
38 23 0.62
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.42
Consensus pattern (37 bp):
TTTACCCTCGATTTAAGAATTACCATTTACCCTCGTA
Found at i:243042270 original size:27 final size:26
Alignment explanation
Indices: 243042099--243042602 Score: 372
Period size: 27 Copynumber: 18.3 Consensus size: 26
243042089 CCAAAGTACT
*
243042099 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
*
243042126 CTC-AGTTTACAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTAC-CTTTTACC
* *
243042153 CTCGATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTAC-CTTTTACC
** *
243042180 CTCGATTTGTAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
243042207 CTC-AGTTTACAGAATTACCATTTTACC
1 CTCGA-TTTACAGAATTACC-TTTTACC
*
243042234 CTCGATTTACAGAATTACCATTTACC
1 CTCGATTTACAGAATTACCTTTTACC
* *
243042260 CTCGTTTTTACCCTCAGTTTAAGAATTACTATTTTACC
1 CTCG-ATTTA----C------AGAATTAC-CTTTTACC
*
243042298 CTCGATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
* ** *
243042325 CTCTATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
*
243042352 CTCGATTTACCGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
* *
243042379 CTC-AGGTTACAGAATTACTATTTTACC
1 CTCGA-TTTACAGAATTAC-CTTTTACC
**
243042406 CTCGATTTACAGAATTATTGTTTTACC
1 CTCGATTTACAGAATTA-CCTTTTACC
*
243042433 CTC-AGTTTACAGAATTACTGTTTTACC
1 CTCGA-TTTACAGAATTAC-CTTTTACC
*
243042460 CTCGATTTTATAGAATTACCGTTTTACC
1 CTCGA-TTTACAGAATTACC-TTTTACC
** *
243042488 CTCGATTTGTAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
* *
243042515 CTTGATTTATAGAATTA-CTGGTTTACC
1 CTCGATTTACAGAATTACCT--TTTACC
* *
243042542 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTA-CCTTTTACC
*
243042569 CTCGATTTACAGAATTGCCGTTTTACC
1 CTCGATTTACAGAATTACC-TTTTACC
*
243042596 CTTGATT
1 CTCGATT
243042603 GTGAAATTAC
Statistics
Matches: 396, Mismatches: 47, Indels: 68
0.77 0.09 0.13
Matches are distributed among these distances:
25 1 0.00
26 17 0.04
27 325 0.82
28 29 0.07
29 1 0.00
31 1 0.00
37 12 0.03
38 10 0.03
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.41
Consensus pattern (26 bp):
CTCGATTTACAGAATTACCTTTTACC
Found at i:243042302 original size:64 final size:66
Alignment explanation
Indices: 243042200--243042327 Score: 215
Period size: 64 Copynumber: 2.0 Consensus size: 66
243042190 AAAATTACCA
243042200 TTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACC-ATTTACCCTCG
1 TTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGATTTACCCTCG
243042264 T
66 T
* * *
243042265 TTTTACCCTCAGTTTA-AGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC
1 TTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGATTTACCCTC
243042328 TATTTGTAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 34 0.58
65 25 0.42
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.41
Consensus pattern (66 bp):
TTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCGATTTACCCTCG
T
Found at i:243042361 original size:91 final size:92
Alignment explanation
Indices: 243042174--243042422 Score: 240
Period size: 91 Copynumber: 2.8 Consensus size: 92
243042164 GAATTACTGT
*
243042174 TTTACCCTCGATTTGTAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGA
1 TTTACCCTCGAGTTGTAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGA
* *
243042239 TTTACAGAATTACCATTTACCCTCGTT
66 TTTACAAAATTACCATTTACCCTCGTA
* * *
243042266 TTTACCCTC-AGTT-TAAGAATTACTATTTTACCCTC-GATTTATAGAATTACCGTTTTACCCTC
1 TTTACCCTCGAGTTGTAA-AATTACCATTTTACCCTCAG-TTTACAGAATTACCATTTTACCCTC
* ** *
243042328 TATTTGTAAAATTACCGTTTTACCCTCG-A
64 GATTTACAAAATTACC-ATTTACCCTCGTA
* * *
243042357 TTTA--C-C-----G---AATTACCGTTTTACCCTCAGGTTACAGAATTACTATTTTACCCTCGA
1 TTTACCCTCGAGTTGTAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGA
*
243042411 TTTACAGAATTA
66 TTTACAAAATTA
243042423 TTGTTTTACC
Statistics
Matches: 132, Mismatches: 20, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
81 47 0.36
82 1 0.01
88 1 0.01
89 1 0.01
90 4 0.03
91 59 0.45
92 19 0.14
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (92 bp):
TTTACCCTCGAGTTGTAAAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTCGA
TTTACAAAATTACCATTTACCCTCGTA
Found at i:243042637 original size:27 final size:27
Alignment explanation
Indices: 243042607--243042801 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
243042597 TTGATTGTGA
*
243042607 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
243042634 AATTTCCAAAATAGCCCTATA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
243042660 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
243042687 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
243042714 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
243042741 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
243042768 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
243042795 AATTACC
1 AATTACC
243042802 ATTTTGCCCC
Statistics
Matches: 141, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 21 0.15
27 120 0.85
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:243043051 original size:25 final size:25
Alignment explanation
Indices: 243043003--243043080 Score: 84
Period size: 27 Copynumber: 3.0 Consensus size: 25
243042993 GGAAGCGTTT
*
243043003 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGT-GCTCTGCCAC-AATATCTGTTC
*
243043030 TGGTGCTCTGCCACAATATCTGTATT
1 TGGTGCTCTGCCACAATATCTGT-TC
**
243043056 TGGTGACTCTATCACAATATCTGTT
1 TGGTG-CTCTGCCACAATATCTGTT
243043081 GACCGATCGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
25 9 0.20
26 16 0.36
27 20 0.44
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (25 bp):
TGGTGCTCTGCCACAATATCTGTTC
Found at i:243043200 original size:22 final size:22
Alignment explanation
Indices: 243043169--243043226 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
243043159 CCGTTATTAG
*
243043169 TGGCTCTGTGCCAACCTAAATA
1 TGGCTTTGTGCCAACCTAAATA
* * * *
243043191 TGGCTTTGTGCCATCTTGACTA
1 TGGCTTTGTGCCAACCTAAATA
*
243043213 TGGCTTCGTGCCAA
1 TGGCTTTGTGCCAA
243043227 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (22 bp):
TGGCTTTGTGCCAACCTAAATA
Found at i:243043445 original size:27 final size:28
Alignment explanation
Indices: 243043391--243043459 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
243043381 TAGGTGGGTT
* * *
243043391 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTATTCTAGTGACTC
243043418 TGCCACAATATCTGTA-TCTAGTGACTC
1 TGCCACAATATCTGTATTCTAGTGACTC
* *
243043445 TGTCACGATATCTGT
1 TGCCACAATATCTGT
243043460 TCTGACAGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 35 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (28 bp):
TGCCACAATATCTGTATTCTAGTGACTC
Found at i:243043616 original size:6 final size:6
Alignment explanation
Indices: 243043605--243043765 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
243043595 CTGTCACGTA
* *
243043605 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
243043653 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
243043702 ATTTTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTAC-G
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
243043749 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
243043766 CATTTTGGTT
Statistics
Matches: 129, Mismatches: 12, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
5 12 0.09
6 109 0.84
7 6 0.05
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:243043720 original size:85 final size:84
Alignment explanation
Indices: 243043580--243043765 Score: 327
Period size: 85 Copynumber: 2.2 Consensus size: 84
243043570 TTGCATTCAT
* *
243043580 ATTCTGATCCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
243043645 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTAC-G
* *
243043665 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTTTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
243043730 TGATTCTGATTCTGTTACG
66 TGATTCTGATTCTGTTACG
243043749 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
243043766 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
84 18 0.19
85 79 0.81
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (84 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACG
Found at i:243043785 original size:30 final size:29
Alignment explanation
Indices: 243043580--243043786 Score: 194
Period size: 30 Copynumber: 7.1 Consensus size: 29
243043570 TTGCATTCAT
*
243043580 ATTCTGATCCTGATTCTG-TCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTC-C--AATTCTG
* *
243043611 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTT-CCAATTCTG
243043641 ATTCTGATTCTGATTCTGTT---A--CTG
1 ATTCTGATTCTGATTCTGTTCCAATTCTG
*
243043665 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGT-TCC-AATTCTG
* *
243043696 ATTCTGATTTTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTT-CCAAT-TCTG
* *
243043726 ATTCTGATTCTGATTCTGTTACGATTCTG
1 ATTCTGATTCTGATTCTGTTCCAATTCTG
* *
243043755 ATTCTGATTCTCATTTTGGTTCCAATTCTG
1 ATTCTGATTCTGATTCT-GTTCCAATTCTG
243043785 AT
1 AT
243043787 AATGTTTCTT
Statistics
Matches: 148, Mismatches: 15, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
24 22 0.15
26 1 0.01
28 1 0.01
29 20 0.14
30 62 0.42
31 40 0.27
32 1 0.01
33 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTCCAATTCTG
Found at i:243047891 original size:25 final size:25
Alignment explanation
Indices: 243047862--243047909 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
243047852 TTATAACATG
* *
243047862 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
243047887 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
243047910 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:243047993 original size:11 final size:11
Alignment explanation
Indices: 243047957--243048012 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
243047947 CATGGTATGT
243047957 ATGATATGCAC
1 ATGATATGCAC
* *
243047968 ATGACATG--T
1 ATGATATGCAC
243047977 ATGATATGCAC
1 ATGATATGCAC
*
243047988 ATGATATG--T
1 ATGATATGCAC
243047997 ATGATATGCAC
1 ATGATATGCAC
243048008 ATGAT
1 ATGAT
243048013 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:243048012 original size:20 final size:20
Alignment explanation
Indices: 243047946--243048012 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
243047936 ATTTTGATAA
*
243047946 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
243047966 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
243047986 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
243048006 ACATGAT
1 ACATGAT
243048013 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:243048102 original size:22 final size:23
Alignment explanation
Indices: 243048061--243048155 Score: 165
Period size: 23 Copynumber: 4.1 Consensus size: 23
243048051 GGAGAAGTGA
243048061 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
243048084 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
243048106 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
243048129 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
243048153 AAA
1 AAA
243048156 AGAGGCTAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
22 22 0.32
23 25 0.36
24 22 0.32
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:243048125 original size:45 final size:47
Alignment explanation
Indices: 243048061--243048155 Score: 167
Period size: 45 Copynumber: 2.1 Consensus size: 47
243048051 GGAGAAGTGA
243048061 AAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
243048106 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
243048153 AAA
1 AAA
243048156 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 23 0.49
46 11 0.23
47 13 0.28
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:243048172 original size:25 final size:24
Alignment explanation
Indices: 243048060--243048176 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
243048050 TGGAGAAGTG
243048060 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
243048084 -AAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
243048106 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
243048129 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
243048153 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
243048177 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
22 22 0.26
23 22 0.26
24 31 0.36
25 11 0.13
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:243048402 original size:29 final size:31
Alignment explanation
Indices: 243048369--243048430 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
243048359 CGTTTACAGT
243048369 AAAGGCTTC-G-CCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
243048398 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
243048429 AA
1 AA
243048431 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 9 0.31
30 1 0.03
31 19 0.66
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:243055978 original size:20 final size:20
Alignment explanation
Indices: 243055949--243055993 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
243055939 GATTTGATAA
*
243055949 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
243055969 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
243055989 ACATG
1 ACATG
243055994 CTGTATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:243056071 original size:23 final size:23
Alignment explanation
Indices: 243056045--243056099 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
243056035 GAGGAAGTGA
*
243056045 AAAGGGCTTATGCCCCAGTTCTT
1 AAAGGGCTTATGCCCCAGTTATT
243056068 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
243056091 AAAAGGCTT
1 AAAGGGCTT
243056100 TACTCAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:243056301 original size:30 final size:30
Alignment explanation
Indices: 243056262--243056329 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 30
243056252 CAAACCGTTT
*
243056262 ATAGTAAAGGCTTCGGCCCAGTAATATGAA
1 ATAGAAAAGGCTTCGGCCCAGTAATATGAA
**
243056292 ATAGAAAAGGCTTCGGCCCAGTGTTATGAA
1 ATAGAAAAGGCTTCGGCCCAGTAATATGAA
243056322 ATATGAAA
1 ATA-GAAA
243056330 TATGAAAAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 30 0.88
31 4 0.12
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (30 bp):
ATAGAAAAGGCTTCGGCCCAGTAATATGAA
Found at i:243059708 original size:38 final size:39
Alignment explanation
Indices: 243059657--243059799 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
243059647 GAATGTTCGA
243059657 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
243059695 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
243059734 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
243059773 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
243059800 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 34 0.35
39 54 0.56
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:243059745 original size:77 final size:79
Alignment explanation
Indices: 243059658--243059839 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
243059648 AATGTTCGAG
243059658 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
243059721 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
243059735 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
243059800 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
243059814 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
243059840 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 33 0.35
78 20 0.21
79 32 0.34
80 9 0.10
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:243067698 original size:39 final size:39
Alignment explanation
Indices: 243067644--243067787 Score: 243
Period size: 39 Copynumber: 3.7 Consensus size: 39
243067634 GAATGTTCGA
243067644 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
243067683 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
243067722 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
243067761 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
243067788 CTTTGTGCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:243067734 original size:78 final size:79
Alignment explanation
Indices: 243067645--243067826 Score: 276
Period size: 78 Copynumber: 2.3 Consensus size: 79
243067635 AATGTTCGAG
243067645 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
243067709 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
243067723 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
243067788 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * * *
243067802 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
243067827 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 54 0.57
79 40 0.43
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:243070364 original size:68 final size:70
Alignment explanation
Indices: 243070292--243070489 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
243070282 ACACCCTGTA
* * * *
243070292 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
243070354 ATAAAT
65 ATAAAT
*
243070360 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
243070425 ATAAAT
65 ATAAAT
*
243070431 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
243070490 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:243070403 original size:41 final size:41
Alignment explanation
Indices: 243070358--243070475 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
243070348 TGAAAGATAA
243070358 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
243070399 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243070429 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243070470 ATGTAG
1 ATGTAG
243070476 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:243070415 original size:71 final size:71
Alignment explanation
Indices: 243070326--243070489 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243070316 GAGATGTATC
243070326 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243070391 AGGACA
66 AGGACA
243070397 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243070462 AGGACA
66 AGGACA
243070468 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
243070490 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:243077467 original size:68 final size:70
Alignment explanation
Indices: 243077381--243077578 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
243077371 GACCCCTGTA
* * * *
243077381 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
243077443 ATAAAT
65 ATAAAT
*
243077449 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
243077514 ATAAAT
65 ATAAAT
*
243077520 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
243077579 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:243077492 original size:41 final size:41
Alignment explanation
Indices: 243077447--243077564 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
243077437 TGAAAGATAA
243077447 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
243077488 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243077518 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243077559 ATGTAG
1 ATGTAG
243077565 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:243077501 original size:71 final size:71
Alignment explanation
Indices: 243077415--243077578 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243077405 GAGATGTATC
243077415 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243077480 AGGACA
66 AGGACA
243077486 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243077551 AGGACA
66 AGGACA
243077557 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
243077579 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:243089354 original size:19 final size:19
Alignment explanation
Indices: 243089330--243089367 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
243089320 TGCCGTTAGG
243089330 TAGGAAAGAAAACAAAAAA
1 TAGGAAAGAAAACAAAAAA
243089349 TAGGAAAGAAAACAAAAAA
1 TAGGAAAGAAAACAAAAAA
243089368 AATTTTGTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (19 bp):
TAGGAAAGAAAACAAAAAA
Found at i:243095801 original size:30 final size:30
Alignment explanation
Indices: 243095766--243095825 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
243095756 ATTTAATACG
*
243095766 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
243095796 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
243095826 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:243105942 original size:28 final size:28
Alignment explanation
Indices: 243105911--243105975 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
243105901 GATTACTAGA
*
243105911 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
243105939 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
243105967 ATACCCCTA
1 ATACCCCTA
243105976 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:243106139 original size:27 final size:28
Alignment explanation
Indices: 243106081--243106170 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
243106071 AGGAAGCGTC
*
243106081 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
243106109 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
243106136 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
243106165 CTGGTG
1 CTGGTG
243106171 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:243106181 original size:29 final size:28
Alignment explanation
Indices: 243106091--243106181 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
243106081 CTGGTGGCTA
* * *
243106091 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
243106119 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
243106146 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
243106175 TGTCACA
1 TGCCACA
243106182 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:243106189 original size:55 final size:56
Alignment explanation
Indices: 243106081--243106195 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
243106071 AGGAAGCGTC
* * *
243106081 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
243106136 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
243106192 CTGG
1 CTGG
243106196 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:243106664 original size:12 final size:12
Alignment explanation
Indices: 243106647--243106671 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
243106637 ATGGTTTTGT
243106647 TTTATTTTATTA
1 TTTATTTTATTA
243106659 TTTATTTTATTA
1 TTTATTTTATTA
243106671 T
1 T
243106672 GATGAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTTATTA
Found at i:243107280 original size:11 final size:10
Alignment explanation
Indices: 243107252--243107285 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
243107242 AGCCTGTAAG
243107252 TATTCTGAAT
1 TATTCTGAAT
*
243107262 TTTTCTGAAT
1 TATTCTGAAT
243107272 ATATTCTGAAT
1 -TATTCTGAAT
243107283 TAT
1 TAT
243107286 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:243112667 original size:12 final size:13
Alignment explanation
Indices: 243112639--243112671 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
243112629 TTATTTCTTT
243112639 TTCTCCATCTACC
1 TTCTCCATCTACC
*
243112652 TTCTCC-TCTTCC
1 TTCTCCATCTACC
243112664 TTCTCCAT
1 TTCTCCAT
243112672 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:243113938 original size:29 final size:28
Alignment explanation
Indices: 243113884--243113938 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 28
243113874 CCTGCCACGT
* *
243113884 ATATCTGTTTTGGTGGCACTGCCACAAA
1 ATATCTGTTCTGGTGACACTGCCACAAA
* *
243113912 ATATCTGTATCTGGTGACTCTGTCACA
1 ATATCTGT-TCTGGTGACACTGCCACA
243113939 TTTTCTGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.36
29 14 0.64
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (28 bp):
ATATCTGTTCTGGTGACACTGCCACAAA
Found at i:243118068 original size:46 final size:48
Alignment explanation
Indices: 243117883--243118135 Score: 391
Period size: 49 Copynumber: 5.4 Consensus size: 48
243117873 ATATCAAATT
243117883 TGTGAAAGTGTATATATATGTGATAAGG-CTAAT-G-GATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGATGTGATGAA
243117928 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAA
243117977 TGTGAAAAG-GTATATATATGTGATAAGG-CTAATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGG-CGATGTGATGAA
243118025 TGTGAAAGTGTATATATATGATGATAAGGCCT-ATGG-GA-GTGATGAA
1 TGTGAAAGTGTATATATATG-TGATAAGGCCTAATGGCGATGTGATGAA
*
243118071 TGTGAAA-TGTA-ATATATGTGATAAGGCCTAATGGCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGATGTGATGAA
243118117 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
243118136 ATGTGGTAAG
Statistics
Matches: 195, Mismatches: 0, Indels: 23
0.89 0.00 0.11
Matches are distributed among these distances:
43 11 0.06
44 11 0.06
45 34 0.17
46 35 0.18
47 11 0.06
48 41 0.21
49 46 0.24
50 6 0.03
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCGATGTGATGAA
Found at i:243118123 original size:92 final size:94
Alignment explanation
Indices: 243117883--243118135 Score: 392
Period size: 92 Copynumber: 2.7 Consensus size: 94
243117873 ATATCAAATT
243117883 TGTGAAAGTGTATATATATGTGATAAGGCTAAT-G-GATGTGATGAATGTGAAAGTGTATATATA
1 TGTGAAA-TGTATATATATGTGATAAGGCTAATGGCGATGTGATGAATGTGAAAGTGTATATATA
243117946 TGTGATAAGGCCTAATGGCCGATGTGATGAA
65 TGTGATAAGGCCTAATGG-CGATGTGATGAA
*
243117977 TGTGAAAAGGTATATATATGTGATAAGGCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TGTG-AAATGTATATATATGTGATAAGGCTAATGG-CGATGTGATGAATGTGAAAGTGTATATAT
243118042 ATGATGATAAGGCCT-ATGG-GA-GTGATGAA
64 ATG-TGATAAGGCCTAATGGCGATGTGATGAA
*
243118071 TGTGAAATGTA-ATATATGTGATAAGGCCTAATGGCGACGTGATGAATGTGAAAGTGTATATATA
1 TGTGAAATGTATATATATGTGATAAGG-CTAATGGCGATGTGATGAATGTGAAAGTGTATATATA
243118135 T
65 T
243118136 ATGTGGTAAG
Statistics
Matches: 150, Mismatches: 3, Indels: 14
0.90 0.02 0.08
Matches are distributed among these distances:
92 45 0.30
93 13 0.09
94 40 0.27
95 6 0.04
97 35 0.23
98 11 0.07
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (94 bp):
TGTGAAATGTATATATATGTGATAAGGCTAATGGCGATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAGGCCTAATGGCGATGTGATGAA
Found at i:243119305 original size:12 final size:12
Alignment explanation
Indices: 243119288--243119312 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
243119278 GTATAGATTC
243119288 TCTGAGTCTAGT
1 TCTGAGTCTAGT
243119300 TCTGAGTCTAGT
1 TCTGAGTCTAGT
243119312 T
1 T
243119313 TCTATAGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.24, T:0.44
Consensus pattern (12 bp):
TCTGAGTCTAGT
Found at i:243129831 original size:30 final size:30
Alignment explanation
Indices: 243129745--243129842 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
243129735 TTAAACTAAA
* *
243129745 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
243129775 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
243129805 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
243129835 ATGAGCTA
1 ATGAGCTA
243129843 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:243132123 original size:30 final size:30
Alignment explanation
Indices: 243132052--243132134 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
243132042 CTTTTGTTTC
* *
243132052 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
243132083 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
243132112 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
243132135 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:243132134 original size:18 final size:18
Alignment explanation
Indices: 243132085--243132140 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
243132075 CACTCTCAAA
* *
243132085 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
243132102 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
243132120 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
243132139 TT
1 TT
243132141 CAAAGACTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:243132141 original size:12 final size:12
Alignment explanation
Indices: 243132110--243132134 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
243132100 TTTTTCAATC
243132110 TCATTTTCTTTT
1 TCATTTTCTTTT
243132122 TCATTTTCTTTT
1 TCATTTTCTTTT
243132134 T
1 T
243132135 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:243132152 original size:12 final size:12
Alignment explanation
Indices: 243132137--243132167 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
243132127 TTCTTTTTGC
243132137 TTTTCAAAGACT
1 TTTTCAAAGACT
*
243132149 TTTTCAAAGGCT
1 TTTTCAAAGACT
243132161 TTTTCAA
1 TTTTCAA
243132168 GTTCTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGACT
Found at i:243132225 original size:5 final size:5
Alignment explanation
Indices: 243132215--243132271 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
243132205 CTCTTGCCTC
*
243132215 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
243132262 TCTTT TCTTT
1 TCTTT TCTTT
243132272 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:243132255 original size:15 final size:14
Alignment explanation
Indices: 243132215--243132271 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
243132205 CTCTTGCCTC
*
243132215 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
243132230 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
243132245 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
243132262 TCTTTTCTTT
1 TCTTTTCTTT
243132272 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:243132272 original size:21 final size:21
Alignment explanation
Indices: 243132215--243132282 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
243132205 CTCTTGCCTC
* *
243132215 TCTTTTCTTTT-TATTTCGTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
243132236 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
243132257 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
243132277 CTCTTT
1 -TCTTT
243132283 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.01, C:0.18, G:0.04, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:243134953 original size:30 final size:30
Alignment explanation
Indices: 243134867--243134964 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 30
243134857 TTAAACTAAA
* *
243134867 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * * * * *
243134897 TTGAGCTGAGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
* * *
243134927 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
243134957 ATGAGCTA
1 ATGAGCTA
243134965 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGATTTAGCTCGTGAGCTGAAG
Found at i:243142461 original size:40 final size:39
Alignment explanation
Indices: 243142417--243142598 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
243142407 GTTCAAAACA
* * ** * *
243142417 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
243142457 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
243142497 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
243142536 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
243142575 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
243142599 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:243142528 original size:39 final size:39
Alignment explanation
Indices: 243142447--243142599 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
243142437 TATGGTAACC
* *
243142447 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
243142487 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
243142526 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
243142565 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
243142600 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:243151261 original size:28 final size:28
Alignment explanation
Indices: 243151229--243151327 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
243151219 GCCATAAGCC
*
243151229 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
243151257 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
243151285 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
243151314 CGCACACTTAGTGC
1 CGCACACTTAGTGC
243151328 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:243158924 original size:28 final size:28
Alignment explanation
Indices: 243158892--243158990 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
243158882 TGCATAAGCC
*
243158892 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
243158920 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
243158948 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
243158977 CGCACACTTAGTGC
1 CGCACACTTAGTGC
243158991 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:243162762 original size:66 final size:67
Alignment explanation
Indices: 243162633--243162762 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
243162623 GGGATGTATC
*
243162633 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
243162698 AGGACA
62 AGGACA
* *
243162704 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
243162763 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:243170132 original size:68 final size:66
Alignment explanation
Indices: 243170060--243170232 Score: 258
Period size: 68 Copynumber: 2.5 Consensus size: 66
243170050 CATCATGTGT
* *
243170060 ACAAGA-AGGCTACGAGATACTATATAGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAGA-GCTACGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
243170124 GTAG
63 GTAG
243170128 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATG
243170193 TAG
64 TAG
243170196 ACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTC
1 ACAAGAGAGCTAC--GAGAGATAAATGTAGCTAGGTC
243170233 GTATGAGTGA
Statistics
Matches: 100, Mismatches: 2, Indels: 6
0.93 0.02 0.06
Matches are distributed among these distances:
68 90 0.90
69 5 0.05
70 5 0.05
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (66 bp):
ACAAGAGAGCTACGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTA
G
Found at i:243170243 original size:68 final size:68
Alignment explanation
Indices: 243170086--243170232 Score: 294
Period size: 68 Copynumber: 2.2 Consensus size: 68
243170076 ATACTATATA
243170086 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
243170151 AAT
66 AAT
243170154 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
243170219 AAT
66 AAT
243170222 GTAGCTAGGTC
1 GTAGCTAGGTC
243170233 GTATGAGTGA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 79 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
AAT
Found at i:243172964 original size:12 final size:12
Alignment explanation
Indices: 243172949--243173001 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
243172939 ATAGGAAAAC
243172949 AAAATAAACATA
1 AAAATAAACATA
*
243172961 AAAA-AAAGAT-
1 AAAATAAACATA
*
243172971 AAAATAAAAATA
1 AAAATAAACATA
*
243172983 AACATAAACATA
1 AAAATAAACATA
243172995 AAAATAA
1 AAAATAA
243173002 TCGGACTCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
10 4 0.12
11 10 0.29
12 20 0.59
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (12 bp):
AAAATAAACATA
Found at i:243172972 original size:17 final size:18
Alignment explanation
Indices: 243172952--243173001 Score: 77
Period size: 17 Copynumber: 2.9 Consensus size: 18
243172942 GGAAAACAAA
*
243172952 ATAAACATAAAAA-AAAG
1 ATAAACATAAAAATAAAC
243172969 ATAAA-ATAAAAATAAAC
1 ATAAACATAAAAATAAAC
243172986 ATAAACATAAAAATAA
1 ATAAACATAAAAATAA
243173002 TCGGACTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 7 0.23
17 13 0.43
18 10 0.33
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (18 bp):
ATAAACATAAAAATAAAC
Found at i:243172980 original size:6 final size:6
Alignment explanation
Indices: 243172949--243173001 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
243172939 ATAGGAAAAC
* * * *
243172949 AAAATA AACATA AAAA-A AAGAT- AAAATA AAAATA AACATA AACATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
243172995 AAAATA A
1 AAAATA A
243173002 TCGGACTCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 8 0.21
6 31 0.79
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:243182377 original size:14 final size:14
Alignment explanation
Indices: 243182358--243182384 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
243182348 CATCGATCCA
243182358 CGACGTTTTTCATC
1 CGACGTTTTTCATC
243182372 CGACGTTTTTCAT
1 CGACGTTTTTCAT
243182385 GTATCCATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.15, T:0.44
Consensus pattern (14 bp):
CGACGTTTTTCATC
Found at i:243197334 original size:40 final size:40
Alignment explanation
Indices: 243197186--243197310 Score: 225
Period size: 40 Copynumber: 3.1 Consensus size: 40
243197176 TCGATATAAT
243197186 ATATATATCCGGGTTAAAT-CCGCAGGCTTCGTGCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
243197225 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
243197265 ATATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
*
243197305 CTATAT
1 ATATAT
243197311 CCGGACTTAA
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 19 0.23
40 64 0.77
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:243197358 original size:79 final size:79
Alignment explanation
Indices: 243197190--243197345 Score: 190
Period size: 80 Copynumber: 2.0 Consensus size: 79
243197180 TATAATATAT
* *
243197190 ATATCCGGGTTAAATCCGCAGGCTTCGTGCTGGTAATATATATCCGGGTTAAATCCCGCAGGCTT
1 ATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATATATATCCGGCTTAAATCCCGCAGGCTT
* * *
243197255 CGTGCTGGTAATAT
66 CGAGCTAGTAATAG
* * *
243197269 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CTATATCCGGACTTAAAGTTCCGTAGG
1 ATATCCGGGTTAAAT-CCGCAGGCTTAGTGCTGGTAATATATATCCGG-CTTAAA-TCCCGCAGG
*
243197332 CTTTGAGCTAGTAA
63 CTTCGAGCTAGTAA
243197346 CTGGATTCGG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 9 0.14
79 21 0.32
80 36 0.55
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (79 bp):
ATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATATATATCCGGCTTAAATCCCGCAGGCTT
CGAGCTAGTAATAG
Found at i:243204869 original size:42 final size:41
Alignment explanation
Indices: 243204806--243204934 Score: 192
Period size: 42 Copynumber: 3.1 Consensus size: 41
243204796 TCGATATAAT
*
243204806 ATATATATCC-GGTTAAATCCCGCAGGCTTCATGTTCTGGTA
1 ATATATATCCGGGTTAAATCCCGCAGGCTT-ATGTGCTGGTA
243204847 ATATATATCCGGGTTAAATCCCGCAGGCTT-TGTGCTGGTAA
1 ATATATATCCGGGTTAAATCCCGCAGGCTTATGTGCTGGT-A
243204888 TATATATATCCGGGTTAAATCCCGCAGGCTTA-GTGCTGGTA
1 -ATATATATCCGGGTTAAATCCCGCAGGCTTATGTGCTGGTA
*
243204929 CTATAT
1 ATATAT
243204935 CCGGACTTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
40 13 0.16
41 12 0.15
42 57 0.70
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (41 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTATGTGCTGGTA
Found at i:243204956 original size:82 final size:83
Alignment explanation
Indices: 243204802--243204969 Score: 227
Period size: 82 Copynumber: 2.0 Consensus size: 83
243204792 GCTCTCGATA
* *
243204802 TAATATATATATCCGGTTAAATCCCGCAGGCTTCATGTTCTGGTAATATATATCCGGGTTAAATC
1 TAATATATATATCCGGTTAAATCCCGCAGGCTTCATGTGCTGGTAATATATATCCGGCTTAAATC
* *
243204867 CCGCAGGCTTTGTGCTGG
66 CCGCAGGCTTTGAGCTAG
*
243204885 TAATATATATATCCGGGTTAAATCCCGCAGGCTT-A-GTGCTGGT-A-CTATATCCGGACTTAAA
1 TAATATATATATCC-GGTTAAATCCCGCAGGCTTCATGTGCTGGTAATATATATCCGG-CTTAAA
*
243204946 GTTCCGCAGGCTTTGAGCTAG
64 -TCCCGCAGGCTTTGAGCTAG
243204967 TAA
1 TAA
243204970 CTGGATTCGG
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
80 9 0.12
81 6 0.08
82 27 0.36
83 15 0.20
84 19 0.25
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (83 bp):
TAATATATATATCCGGTTAAATCCCGCAGGCTTCATGTGCTGGTAATATATATCCGGCTTAAATC
CCGCAGGCTTTGAGCTAG
Found at i:243208078 original size:39 final size:40
Alignment explanation
Indices: 243208034--243208200 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
243208024 TCGGATACAA
* *
243208034 CCGGATATAACCACACGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
243208073 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
243208113 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
243208153 CCGGATA-AAGTC-ACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA--CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
*
243208193 CCAGATAT
1 CCGGATAT
243208201 CATTCAATTG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
39 31 0.28
40 80 0.71
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:243208180 original size:80 final size:79
Alignment explanation
Indices: 243208034--243208200 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
243208024 TCGGATACAA
* *
243208034 CCGGATATAACCACACGCACGAATGCCTTCGGTCTTAGCCCGGATATAACGACTCGCACAAATGC
1 CCGGATATAACAACACGCACGAATGCCTTCGGTCTTAGCCCGGATATAACGACTAGCACAAATGC
*
243208099 CTTCGGGTATTAGC
66 CTTCGGGTATTAAC
** *
243208113 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTC-GGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
243208176 TGCCTTCGGGTCTTAAC
63 TGCCTTCGGGTATTAAC
*
243208193 CCAGATAT
1 CCGGATAT
243208201 CATTCAATTG
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 29 0.38
80 47 0.61
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGTCTTAGCCCGGATATAACGACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:243209837 original size:16 final size:16
Alignment explanation
Indices: 243209816--243209853 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
243209806 AAATCAAGGC
243209816 ACAAATATTTACGCAT
1 ACAAATATTTACGCAT
243209832 ACAAATATTTACGCAT
1 ACAAATATTTACGCAT
243209848 ACAAAT
1 ACAAAT
243209854 TCCACATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (16 bp):
ACAAATATTTACGCAT
Done.