Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 766 of 770
Found at i:243215274 original size:40 final size:40
Alignment explanation
Indices: 243215229--243215396 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
243215219 TCGGATACAA
243215229 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
243215269 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
243215309 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
243215349 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
243215389 CCGGATAT
1 CCGGATAT
243215397 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:243215369 original size:80 final size:80
Alignment explanation
Indices: 243215229--243215396 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
243215219 TCGGATACAA
* *
243215229 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
243215294 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
243215309 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
243215372 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
243215389 CCGGATAT
1 CCGGATAT
243215397 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:243222613 original size:46 final size:44
Alignment explanation
Indices: 243222554--243222668 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
243222544 ACAGGACAGA
* *
243222554 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
243222600 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
243222644 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
243222669 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:243222649 original size:44 final size:45
Alignment explanation
Indices: 243222554--243222687 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
243222544 ACAGGACAGA
* *
243222554 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
243222600 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
243222644 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
243222688 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:243224788 original size:3 final size:3
Alignment explanation
Indices: 243224780--243224817 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
243224770 ACCATTTGTA
243224780 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
243224818 ATAAATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:243224822 original size:4 final size:4
Alignment explanation
Indices: 243224813--243224840 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
243224803 TAATAATAAT
243224813 AATA AATA AATA AATA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA
243224841 TATTTTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:243224865 original size:34 final size:35
Alignment explanation
Indices: 243224822--243224888 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
243224812 TAATAAATAA
*
243224822 ATAAATAAATAAATAA-ATATATTT-TACTTAATTT
1 ATAAATAAATAAATAACATACATTTGTA-TTAATTT
* *
243224856 ATAAGTAAATATATAACATACATTTGTATTAAT
1 ATAAATAAATAAATAACATACATTTGTATTAAT
243224889 AATTTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 14 0.50
35 12 0.43
36 2 0.07
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (35 bp):
ATAAATAAATAAATAACATACATTTGTATTAATTT
Found at i:243230670 original size:40 final size:40
Alignment explanation
Indices: 243230586--243230751 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
243230576 AACCCAAGTA
* * * * *
243230586 CCTTCGGAATTTAG-CCTGATATAG-CAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
243230625 CCTTCGGGACTTAGCCCAGACATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
243230665 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
243230705 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
243230745 CCTTCGG
1 CCTTCGG
243230752 ATCTTATCCG
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.10
40 103 0.89
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:243238500 original size:39 final size:38
Alignment explanation
Indices: 243238451--243238667 Score: 311
Period size: 37 Copynumber: 5.7 Consensus size: 38
243238441 TATGCAACTC
* *
243238451 GCACGAATGCCTTCGGACTTAGCCCGGACATAGTCACTA
1 GCACAAATGCCTTCGGACTTAGCCCGGATATA-TCACTA
243238490 GCACAAATGCCTTCGGGACTTAGCCCGGATATATCACTA
1 GCACAAATGCCTTC-GGACTTAGCCCGGATATATCACTA
243238529 GCACAAATGCCTTCGAGACTTAGCCCGGA-A-ATCACTA
1 GCACAAATGCCTTCG-GACTTAGCCCGGATATATCACTA
243238566 GCACAAAT-CCTT-GGACTTAGCCCGGATATAATCACTA
1 GCACAAATGCCTTCGGACTTAGCCCGGATAT-ATCACTA
243238603 GCACAAATGCCTT-GGACTTAGCCC-GATATAATCACTA
1 GCACAAATGCCTTCGGACTTAGCCCGGATAT-ATCACTA
*
243238640 GCACAAATGCCTTCGGATCTTAGTCCGG
1 GCACAAATGCCTTCGGA-CTTAGCCCGG
243238668 TTATCATTCG
Statistics
Matches: 166, Mismatches: 3, Indels: 17
0.89 0.02 0.09
Matches are distributed among these distances:
34 13 0.08
35 2 0.01
36 4 0.02
37 56 0.34
38 20 0.12
39 53 0.32
40 18 0.11
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (38 bp):
GCACAAATGCCTTCGGACTTAGCCCGGATATATCACTA
Found at i:243240637 original size:16 final size:17
Alignment explanation
Indices: 243240607--243240642 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
243240597 NNNNNNNNNN
243240607 AATTAGGGCCTAATCGG
1 AATTAGGGCCTAATCGG
243240624 AATTAGGG-CTAATCGG
1 AATTAGGGCCTAATCGG
243240640 AAT
1 AAT
243240643 ATGGTTTCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (17 bp):
AATTAGGGCCTAATCGG
Found at i:243242047 original size:70 final size:71
Alignment explanation
Indices: 243241896--243242058 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
243241886 GAGATGTATC
243241896 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243241961 AGGACA
66 AGGACA
243241967 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
243242031 CGGACA
66 AGGACA
243242037 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
243242059 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:243249476 original size:41 final size:41
Alignment explanation
Indices: 243249431--243249548 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
243249421 TGAAAGATAA
243249431 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
243249472 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243249502 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
243249543 ATGTAG
1 ATGTAG
243249549 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:243249487 original size:71 final size:71
Alignment explanation
Indices: 243249399--243249562 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243249389 GAGATGTATC
243249399 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243249464 AGGACA
66 AGGACA
243249470 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
243249535 AGGACA
66 AGGACA
243249541 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
243249563 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:243253687 original size:40 final size:39
Alignment explanation
Indices: 243253630--243253813 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
243253620 TCGAATGATG
* * * *
243253630 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
243253670 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
243253710 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
243253750 TCCGGA-TAAGTCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
243253789 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
243253814 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 29 0.22
39 10 0.08
40 84 0.64
41 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:243253813 original size:78 final size:80
Alignment explanation
Indices: 243253630--243253813 Score: 234
Period size: 78 Copynumber: 2.3 Consensus size: 80
243253620 TCGAATGATG
* *
243253630 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
243253695 GTGCGAGTTACTAAA
66 GTGCGAGCTACTAAA
* * *
243253710 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGA-TAAG-TCCGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGG-ATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
243253771 TTGTGCGAGCTACTATAA
64 TTGTGCGAGCTACTA-AA
*
243253789 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGG-ATTTG
243253814 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
77 1 0.01
78 45 0.49
79 6 0.07
80 31 0.34
81 8 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGCTACTAAA
Found at i:243253842 original size:78 final size:78
Alignment explanation
Indices: 243253664--243253845 Score: 183
Period size: 78 Copynumber: 2.3 Consensus size: 78
243253654 GTGCTAAGTG
* * *
243253664 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGA-TAA-CTCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
**
243253729 GCATTTGTGCGAGTT
64 GCATTTGAACGAGTT
* * *
243253744 ACTAAATCCGGATAAGTCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAG
1 ACTAAATCCGGATAACTCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAG
*
243253807 GTATTTGAACGAG-T
64 GCATTTGAACGAGTT
* *
243253821 AGCTATAT-CGGTTAAACTCCGAAGG
1 A-CTAAATCCGGAT-AACTCCGAAGG
243253846 TACGTGATTC
Statistics
Matches: 87, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
77 7 0.08
78 64 0.74
79 5 0.06
80 11 0.13
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (78 bp):
ACTAAATCCGGATAACTCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGC
ATTTGAACGAGTT
Found at i:243261794 original size:79 final size:79
Alignment explanation
Indices: 243261663--243261852 Score: 282
Period size: 79 Copynumber: 2.4 Consensus size: 79
243261653 ATGATGTCCG
* *
243261663 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAATTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTG
243261727 CGAGTTACTAAATCC
65 CGAGTTACTAAATCC
*
243261742 GGACTAAGAT-CCGAA-GCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGT
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGT
243261805 GCGAGTTACTAAATCC
64 GCGAGTTACTAAATCC
*
243261821 -G-TAAGTCCCGAAGGCATTTGTGCGAGCTACTA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
243261853 TAACCGGGCT
Statistics
Matches: 102, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
75 1 0.01
76 9 0.09
77 18 0.18
78 1 0.01
79 55 0.54
80 17 0.17
81 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAATTGTGC
GAGTTACTAAATCC
Found at i:243261880 original size:40 final size:40
Alignment explanation
Indices: 243261659--243261852 Score: 267
Period size: 40 Copynumber: 5.0 Consensus size: 40
243261649 TCGAATGATG
* * *
243261659 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
243261699 TCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
243261739 TCCGGACTAAGATCCGAA-GCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
243261778 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
243261818 TCC-G--TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
243261853 TAACCGGGCT
Statistics
Matches: 144, Mismatches: 6, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
36 1 0.01
37 28 0.19
39 39 0.27
40 69 0.48
41 7 0.05
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:243261887 original size:77 final size:78
Alignment explanation
Indices: 243261693--243261887 Score: 229
Period size: 79 Copynumber: 2.5 Consensus size: 78
243261683 GTGCTAAGTG
* **
243261693 ACTAAATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGA-TAAGATCCGAAG
*
243261758 CATTTGTGCGAGTT
65 CATTTGTGCGAGCT
**
243261772 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCC-G-TAAG-TCCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGATAAGAT-CCGAA-
243261834 GCATTTGTGCGAGCT
64 GCATTTGTGCGAGCT
* * *
243261849 ACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
243261888 GGCTATATCG
Statistics
Matches: 105, Mismatches: 7, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
75 1 0.01
76 10 0.10
77 43 0.41
78 3 0.03
79 48 0.46
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (78 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGATAAGATCCGAAGC
ATTTGTGCGAGCT
Found at i:243264498 original size:71 final size:71
Alignment explanation
Indices: 243264412--243264575 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243264402 CGATTTGTCT
243264412 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243264477 CTTTCA
66 CTTTCA
243264483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243264548 CTTTCA
66 CTTTCA
243264554 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
243264576 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:243264613 original size:71 final size:70
Alignment explanation
Indices: 243264412--243264609 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
243264402 CGATTTGTCT
* * * *
243264412 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243264477 CTTTCA
65 CTTTCA
* * * *
243264483 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243264548 CTTTCA
65 CTTTCA
* *
243264554 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
243264610 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:243275741 original size:40 final size:40
Alignment explanation
Indices: 243275654--243275861 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
243275644 CCTTCGGAAT
* * *
243275654 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
243275693 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
243275733 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
243275773 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
243275813 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
243275853 TTAGCCCGG
1 TTAACCCGG
243275862 TATCATTCCA
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:243275779 original size:80 final size:80
Alignment explanation
Indices: 243275654--243275862 Score: 242
Period size: 80 Copynumber: 2.6 Consensus size: 80
243275644 CCTTCGGAAT
* * * ** ***
243275654 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAACAACTCGCAC
243275718 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * * *
243275733 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAACAACTCGCAC
243275798 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
243275813 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
243275863 ATCATTCCAA
Statistics
Matches: 106, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 4 0.04
80 100 0.94
81 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:243283699 original size:40 final size:40
Alignment explanation
Indices: 243283612--243283822 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
243283602 CCTTCGGAAT
* * *
243283612 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
243283651 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
243283691 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* *
243283731 TTAGCCCGGATATAA-AACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
243283770 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
243283810 TTAGCCCGGATAT
1 TTAACCCGGATAT
243283823 CATTCCAATG
Statistics
Matches: 144, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 37 0.26
40 103 0.72
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:243283763 original size:79 final size:80
Alignment explanation
Indices: 243283612--243283822 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 80
243283602 CCTTCGGAAT
* * * ** * **
243283612 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCAC
243283676 AATTGCCTTCGGGTC
66 AATTGCCTTCGGGTC
* ** * *
243283691 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA-AAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCAC
243283755 GAA-TGCCTTCGGGTC
66 -AATTGCCTTCGGGTC
* * *
243283770 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
243283823 CATTCCAATG
Statistics
Matches: 110, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 69 0.63
80 41 0.37
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCAC
AATTGCCTTCGGGTC
Found at i:243291174 original size:27 final size:28
Alignment explanation
Indices: 243291140--243291208 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
243291130 TACTCGATCA
* *
243291140 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
243291167 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
243291195 CGCACACTTAGTGC
1 CGCACACTTAGTGC
243291209 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:243292578 original size:19 final size:19
Alignment explanation
Indices: 243292544--243292583 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
243292534 TCCACACCCA
243292544 TTTTTTTTTCATCATTATCTT
1 TTTTTTTTTCA-CATT-TCTT
243292565 TTTTTTTTTC-CATTTCTT
1 TTTTTTTTTCACATTTCTT
243292583 T
1 T
243292584 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.26
19 4 0.21
21 10 0.53
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTTTTCACATTTCTT
Found at i:243297864 original size:88 final size:88
Alignment explanation
Indices: 243297715--243297890 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
243297705 ATTCTTTGAT
*
243297715 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGACTTTCCTGAATATCTTTTACG
1 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGAATTTCCTGAATATCTTTTACG
243297780 AAATTCTCCAGTTTTGACATCAG
66 AAATTCTCCAGTTTTGACATCAG
243297803 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGAATTTCCTGAATATCTTTTACG
1 TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGAATTTCCTGAATATCTTTTACG
243297868 AAATTCTCCAGTTTTGACATCAG
66 AAATTCTCCAGTTTTGACATCAG
243297891 CTTTCTTTTT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (88 bp):
TGGCCTGAACCATCTCGAAATTTCTTCGATGATTGTTGAAAAGAATTTCCTGAATATCTTTTACG
AAATTCTCCAGTTTTGACATCAG
Found at i:243305341 original size:39 final size:39
Alignment explanation
Indices: 243305268--243305449 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
243305258 AATGTTCGAG
243305268 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
243305306 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
243305345 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
243305384 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
243305424 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
243305450 GTTTGAACGA
Statistics
Matches: 125, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
38 16 0.13
39 71 0.57
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:243308009 original size:34 final size:34
Alignment explanation
Indices: 243307966--243308032 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
243307956 CACTCCTTAC
243307966 CGAGACTGTTTCCAGAATCGAGCACGAGGCATTT
1 CGAGACTGTTTCCAGAATCGAGCACGAGGCATTT
243308000 CGAGACTGTTTCCAGAATCGAGCACGAGGCATT
1 CGAGACTGTTTCCAGAATCGAGCACGAGGCATT
243308033 ACTAAACTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (34 bp):
CGAGACTGTTTCCAGAATCGAGCACGAGGCATTT
Found at i:243309333 original size:46 final size:44
Alignment explanation
Indices: 243309229--243309336 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
243309219 TGTCTTTGAC
** * * *
243309229 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
243309273 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
243309319 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
243309337 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:243314419 original size:23 final size:25
Alignment explanation
Indices: 243314374--243314420 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
243314364 GCCTGAAATG
**
243314374 ATCTGCTCATCTGTCTCTTCTTTGT
1 ATCTGCTCATCTGTCTCAACTTTGT
243314399 ATCTG-TC-TCTGTCTCAACTTTG
1 ATCTGCTCATCTGTCTCAACTTTG
243314421 CCTTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 2 0.10
25 5 0.25
ACGTcount: A:0.11, C:0.28, G:0.13, T:0.49
Consensus pattern (25 bp):
ATCTGCTCATCTGTCTCAACTTTGT
Found at i:243316671 original size:46 final size:44
Alignment explanation
Indices: 243316567--243316674 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
243316557 TGTCTTTGAC
** * * *
243316567 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
243316611 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
243316657 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
243316675 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:243319751 original size:24 final size:24
Alignment explanation
Indices: 243319713--243319758 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
243319703 ATCTCAATAC
*
243319713 TCCTTTTGGTCAGGGACCATCATT
1 TCCTTTTGATCAGGGACCATCATT
* *
243319737 TCCTTTTGATTAGGGAGCATCA
1 TCCTTTTGATCAGGGACCATCA
243319759 CCACAACAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (24 bp):
TCCTTTTGATCAGGGACCATCATT
Found at i:243332082 original size:27 final size:28
Alignment explanation
Indices: 243332026--243332095 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
243332016 AAATTTGTAC
243332026 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
243332054 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
243332081 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
243332096 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:243332106 original size:27 final size:27
Alignment explanation
Indices: 243332026--243332107 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
243332016 AAATTTGTAC
* *
243332026 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
243332054 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
243332081 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
243332108 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:243339738 original size:26 final size:27
Alignment explanation
Indices: 243339709--243339776 Score: 104
Period size: 26 Copynumber: 2.6 Consensus size: 27
243339699 AAATTTGTAC
243339709 AGCACTAAGTGTGCGAGTTTGA-T-CAT
1 AGCACTAAGTGTGCGAG-TTGATTACAT
*
243339735 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTACAT
243339762 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
243339777 GACTCACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
25 4 0.10
26 18 0.46
27 17 0.44
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTACAT
Found at i:243339787 original size:27 final size:27
Alignment explanation
Indices: 243339709--243339788 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
243339699 AAATTTGTAC
*
243339709 AGCACTAAGTGTGCGAG-T--TTGATCAT
1 AGCACTAAGTGTGCGAGCTCACT-AT-AT
* * *
243339735 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
243339762 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
243339789 GCTTTTGAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
26 18 0.38
27 25 0.53
28 2 0.04
29 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:243342510 original size:40 final size:39
Alignment explanation
Indices: 243342465--243342593 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
243342455 CGGAATATAA
*
243342465 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCAT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
243342505 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
243342545 CCGGATAT-AGCCCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CATAGCACAAATGCCTTCGGGTCTTAGC
243342584 CCGGATATAA
1 CCGGATATAA
243342594 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 31 0.41
40 41 0.55
41 2 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAAGCATAGCACAAATGCCTTCGGGTCTTAGC
Found at i:243342614 original size:79 final size:79
Alignment explanation
Indices: 243342481--243342631 Score: 198
Period size: 79 Copynumber: 1.9 Consensus size: 79
243342471 ATAAGCATGT
* *
243342481 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
243342546 CGGATATAGCCCTA
66 CGGATATAGCCCTA
* * ** * *
243342560 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
243342623 CCCGGATAT
64 CCCGGATAT
243342632 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 3 0.05
79 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCCTA
Found at i:243342627 original size:40 final size:39
Alignment explanation
Indices: 243342481--243342631 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 39
243342471 ATAAGCATGT
* * * *
243342481 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATA-TA-GCCCTA
243342521 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCCCTA
* **
243342560 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC-A
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT-A-GCCCTA
* * *
243342600 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
243342632 CATTCAATTT
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
38 3 0.03
39 31 0.32
40 58 0.60
41 4 0.04
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCCCTA
Found at i:243349697 original size:121 final size:121
Alignment explanation
Indices: 243349478--243349699 Score: 288
Period size: 121 Copynumber: 1.8 Consensus size: 121
243349468 TGAATTATGT
* * ** * **
243349478 GAAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTTTTGAAATATACCCGG
1 GAAATGAAATATGGATGTCTAATGATTATTGATGCATGTGTGCATGAGAATTGAAATATACCCGG
* * **
243349543 GCTAAGTCCCGAAGGCGATTATGCTTGTGATTATATTTGCGTTGAGCCTTAGTAAA
66 GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTGAGCCTTAGTAAA
*
243349599 GAAATGAAATAT-GATGTCTAATGATTATTGATGCATGTGTGCATGAGCAATTG-AATGATATCC
1 GAAATGAAATATGGATGTCTAATGATTATTGATGCATGTGTGCATGAG-AATTGAAAT-ATACCC
243349662 GGGCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
64 GGGCTAAGTCCCGAAGACGATTA-TGCTGGAAATTATAT
243349700 CCGGGTTAAG
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
120 36 0.42
121 50 0.58
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (121 bp):
GAAATGAAATATGGATGTCTAATGATTATTGATGCATGTGTGCATGAGAATTGAAATATACCCGG
GCTAAGTCCCGAAGACGATTATGCTGGAAATTATATTTGCGTTGAGCCTTAGTAAA
Found at i:243349821 original size:40 final size:40
Alignment explanation
Indices: 243349694--243349823 Score: 147
Period size: 40 Copynumber: 3.2 Consensus size: 40
243349684 TTGCTGGAAA
* * *
243349694 TTATATCCGGGTTAAGATCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
243349734 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
243349774 TTCTATCCGGGCTACGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
243349814 TTATATCCGG
1 TTATATCCGG
243349824 TTGTATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 4 0.05
40 70 0.95
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:243353883 original size:39 final size:40
Alignment explanation
Indices: 243353825--243353925 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
243353815 AAATTGAATG
* *
243353825 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
243353864 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
243353904 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
243353926 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:243353918 original size:40 final size:40
Alignment explanation
Indices: 243353825--243353975 Score: 180
Period size: 40 Copynumber: 3.8 Consensus size: 40
243353815 AAATTGAATG
* * * * *
243353825 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
243353864 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
243353904 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
243353944 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
243353976 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 32 0.33
40 62 0.65
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:243353990 original size:40 final size:38
Alignment explanation
Indices: 243353821--243353992 Score: 161
Period size: 40 Copynumber: 4.4 Consensus size: 38
243353811 TGAGAAATTG
* *
243353821 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
243353860 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
243353897 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
243353937 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
243353977 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
243353993 TAAAGTCCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 26 0.24
40 74 0.68
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:243361887 original size:40 final size:39
Alignment explanation
Indices: 243361839--243361939 Score: 105
Period size: 39 Copynumber: 2.5 Consensus size: 39
243361829 AAATTGAATG
**
243361839 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATTT
1 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTAG-AAGCT
* * * * *
243361879 ATATCCGGGTTAAGACCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
243361918 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAG-CCCGAAG
243361940 GCATTCGTGC
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
39 30 0.60
40 20 0.40
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTAGAAGCT
Found at i:243362004 original size:40 final size:39
Alignment explanation
Indices: 243361837--243362006 Score: 150
Period size: 40 Copynumber: 4.3 Consensus size: 39
243361827 AGAAATTGAA
* *
243361837 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
243361877 TTATATCCGGGTTAAGA-CCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
243361916 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
243361956 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
243361996 TGATATCCGGG
1 TGATATCCGGG
243362007 TTAAAGTCCC
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
36 2 0.02
37 4 0.04
38 2 0.02
39 23 0.22
40 73 0.70
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:243367068 original size:38 final size:39
Alignment explanation
Indices: 243366976--243367137 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
243366966 TGTGTATGAA
*
243366976 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
243367015 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
243367053 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
243367092 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
243367132 TGTGCG
1 TGTGCG
243367138 GGTTACATAA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:243367163 original size:39 final size:40
Alignment explanation
Indices: 243366993--243367167 Score: 175
Period size: 39 Copynumber: 4.5 Consensus size: 40
243366983 ATTGTGATAT
* ** *
243366993 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
*
243367032 CCGGGCTAAG-CCCGAAGGCAA-TGTGCGAGCTATG--ATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAG-T-TGACATAA
** *
243367070 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
* * *
243367109 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTT-ACATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
*
243367148 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAGTCCCGAAGGC
243367168 GTTTTGAACG
Statistics
Matches: 121, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
37 2 0.02
38 33 0.27
39 64 0.53
40 22 0.18
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTGACATAA
Found at i:243375798 original size:40 final size:40
Alignment explanation
Indices: 243375635--243375798 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
243375625 CGGAGTTTAA
** *
243375635 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGA-CATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGATCTTAGC
* *
243375675 CCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGC
* *
243375715 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGC
* *
243375754 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGC
243375794 CCGGA
1 CCGGA
243375799 CATCATTCGA
Statistics
Matches: 108, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
39 35 0.32
40 68 0.63
41 5 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAGC
Found at i:243383624 original size:39 final size:38
Alignment explanation
Indices: 243383576--243383753 Score: 141
Period size: 40 Copynumber: 4.6 Consensus size: 38
243383566 TACTCGTTCA
*
243383576 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCAC
* **
243383615 AATGCCTTCGGGACTTAACCCGGATTTAGT-ACTAACA-
1 AATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCAC
* *
243383652 AATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTCGCAC
1 AATGCCTTCGGGA-CTTAGCCCG-GTTTAGTAACTCGCAC
* * * * *
243383691 GAATGCCTTC-GGATCTTAGTCCGGATATCGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCAC
*
243383732 AAAGCCTTC-GGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
243383754 ACATCATTCG
Statistics
Matches: 115, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
36 3 0.03
37 22 0.19
38 10 0.09
39 34 0.30
40 41 0.36
41 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCAC
Found at i:243385096 original size:39 final size:40
Alignment explanation
Indices: 243385052--243385216 Score: 189
Period size: 40 Copynumber: 4.2 Consensus size: 40
243385042 CGGAATATAA
243385052 CCGGATATAATCACGT-GCACAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAATTGCCTTCGGGTCTTAGC
* * * *
243385091 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAGC
* *
243385131 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
* *
243385171 CCGGATATAATTC-C-AGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAA-TCACTAGCACAATTGCCTTCGGGTCTTAGC
243385209 CCGGATAT
1 CCGGATAT
243385217 CATTCAATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
38 14 0.13
39 34 0.31
40 60 0.55
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:243385201 original size:79 final size:78
Alignment explanation
Indices: 243385052--243385216 Score: 203
Period size: 79 Copynumber: 2.1 Consensus size: 78
243385042 CGGAATATAA
* *
243385052 CCGGATATAATCACGTGCACAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGC
1 CCGGATATAACCACGTGCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGC
243385117 CTTCGGGCCTTAGC
66 CTTCGGG-CTTAGC
* * *
243385131 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAA-TGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
243385192 TTGTCTTCGGGCTTAGC
63 -TGCCTTCGGGCTTAGC
243385209 CCGGATAT
1 CCGGATAT
243385217 CATTCAATTT
Statistics
Matches: 76, Mismatches: 6, Indels: 9
0.84 0.07 0.10
Matches are distributed among these distances:
78 18 0.24
79 32 0.42
80 26 0.34
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CCGGATATAACCACGTGCACAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGC
CTTCGGGCTTAGC
Found at i:243386064 original size:17 final size:19
Alignment explanation
Indices: 243386041--243386086 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
243386031 AAGAAGCATG
243386041 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
243386059 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
243386077 AATCATGCTC
1 AATCATGCTC
243386087 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:243393094 original size:40 final size:40
Alignment explanation
Indices: 243393049--243393215 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
243393039 CGGAATATAA
243393049 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
243393089 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
243393129 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
243393169 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
243393208 CCGGATAT
1 CCGGATAT
243393216 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:243393199 original size:80 final size:79
Alignment explanation
Indices: 243393049--243393215 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
243393039 CGGAATATAA
* *
243393049 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
243393114 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
243393129 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
243393191 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
243393208 CCGGATAT
1 CCGGATAT
243393216 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:243394064 original size:17 final size:19
Alignment explanation
Indices: 243394041--243394086 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
243394031 AAGAAGCATG
243394041 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
243394059 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
243394077 AATCATGCTC
1 AATCATGCTC
243394087 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:243408192 original size:24 final size:24
Alignment explanation
Indices: 243408141--243408297 Score: 250
Period size: 24 Copynumber: 6.7 Consensus size: 24
243408131 CTGGAAATAT
243408141 TGGCACTATGTGTGCGA-TTACTA
1 TGGCACTATGTGTGCGATTTACTA
**
243408164 TGGCACTATGTGTGCGATCCACTA
1 TGGCACTATGTGTGCGATTTACTA
243408188 TGGCACTATGTGTGCGATTTACTA
1 TGGCACTATGTGTGCGATTTACTA
243408212 TGGCACTATGTGTGCGATTTACTA
1 TGGCACTATGTGTGCGATTTACTA
243408236 TGGCACTATGTGT--G-TTTACTA
1 TGGCACTATGTGTGCGATTTACTA
**
243408257 TGGCACTATGTGTGCGATTCGCTA
1 TGGCACTATGTGTGCGATTTACTA
243408281 TGGCACTATGTGTGCGA
1 TGGCACTATGTGTGCGA
243408298 ACATAATAAG
Statistics
Matches: 124, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
21 20 0.16
22 1 0.01
23 18 0.15
24 85 0.69
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGATTTACTA
Found at i:243408272 original size:69 final size:70
Alignment explanation
Indices: 243408141--243408297 Score: 246
Period size: 69 Copynumber: 2.2 Consensus size: 70
243408131 CTGGAAATAT
243408141 TGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCGAT
1 TGGCACTATGTGTGCGATTACTATGGCACTATGTGT-CGATCCACTATGGCACTATGTGTGCGAT
*
243408206 TTACTA
65 TCACTA
**
243408212 TGGCACTATGTGTGCGATTTACTATGGCACTATGTGT-G-TTTACTATGGCACTATGTGTGCGAT
1 TGGCACTATGTGTGCGA-TTACTATGGCACTATGTGTCGATCCACTATGGCACTATGTGTGCGAT
*
243408275 TCGCTA
65 TCACTA
243408281 TGGCACTATGTGTGCGA
1 TGGCACTATGTGTGCGA
243408298 ACATAATAAG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
69 44 0.54
70 1 0.01
71 17 0.21
72 19 0.23
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (70 bp):
TGGCACTATGTGTGCGATTACTATGGCACTATGTGTCGATCCACTATGGCACTATGTGTGCGATT
CACTA
Found at i:243408294 original size:45 final size:46
Alignment explanation
Indices: 243408141--243408293 Score: 236
Period size: 45 Copynumber: 3.3 Consensus size: 46
243408131 CTGGAAATAT
* *
243408141 TGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATCCACTA
1 TGGCACTATGTGT-CGTTTACTATGGCACTATGTGTGCGATTCACTA
*
243408188 TGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTA
1 TGGCACTATGTGT-CG-TTTACTATGGCACTATGTGTGCGATTCACTA
*
243408236 TGGCACTATGTGT-GTTTACTATGGCACTATGTGTGCGATTCGCTA
1 TGGCACTATGTGTCGTTTACTATGGCACTATGTGTGCGATTCACTA
243408281 TGGCACTATGTGT
1 TGGCACTATGTGT
243408294 GCGAACATAA
Statistics
Matches: 100, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
45 42 0.42
46 1 0.01
47 16 0.16
48 41 0.41
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.36
Consensus pattern (46 bp):
TGGCACTATGTGTCGTTTACTATGGCACTATGTGTGCGATTCACTA
Found at i:243408311 original size:69 final size:69
Alignment explanation
Indices: 243408141--243408318 Score: 207
Period size: 69 Copynumber: 2.6 Consensus size: 69
243408131 CTGGAAATAT
* * * **
243408141 TGGCACTATGTGTGCGA-TTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCGA
1 TGGCACTATGTGTGCGACATAATATAGCACTATGTGT--G-TTTACTATGGCACTATGTGTGCGA
*
243408205 TTTACTA
63 TTCACTA
** * *
243408212 TGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGTTTACTATGGCACTATGTGTGCGATTC
1 TGGCACTATGTGTGCGACATAATATAGCACTATGTGTGTTTACTATGGCACTATGTGTGCGATTC
*
243408277 GCTA
66 ACTA
243408281 TGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
243408319 CCACATTCGG
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
69 55 0.57
70 6 0.06
71 17 0.18
72 19 0.20
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (69 bp):
TGGCACTATGTGTGCGACATAATATAGCACTATGTGTGTTTACTATGGCACTATGTGTGCGATTC
ACTA
Found at i:243408311 original size:93 final size:94
Alignment explanation
Indices: 243408141--243408319 Score: 263
Period size: 93 Copynumber: 1.9 Consensus size: 94
243408131 CTGGAAATAT
*
243408141 TGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCGAT
1 TGGCACTATGTGT-CGATTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCGAC
* * *
243408206 TTACTATGGCACTATGTGTGCGATTTACTA
65 ATAATATAGCACTATGTGTGCGATTTACTA
* * *
243408236 TGGCACTATGTGT-GTTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAAC
1 TGGCACTATGTGTCGATTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCG-AC
243408300 ATAATA-AGCACTATGTGTGC
65 ATAATATAGCACTATGTGTGC
243408320 CACATTCGGT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
93 58 0.76
94 5 0.07
95 13 0.17
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (94 bp):
TGGCACTATGTGTCGATTACTATGGCACTATGTGTGCGATCCACTATGGCACTATGTGTGCGACA
TAATATAGCACTATGTGTGCGATTTACTA
Found at i:243410587 original size:25 final size:25
Alignment explanation
Indices: 243410553--243410603 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
243410543 AGGCTGAATT
243410553 TGAAGCTAGAGACTATCGCAAAAGA
1 TGAAGCTAGAGACTATCGCAAAAGA
243410578 TGAAGCTAGAGACTATCGCAAAAGA
1 TGAAGCTAGAGACTATCGCAAAAGA
243410603 T
1 T
243410604 CGACGGGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.24, T:0.18
Consensus pattern (25 bp):
TGAAGCTAGAGACTATCGCAAAAGA
Found at i:243415853 original size:26 final size:27
Alignment explanation
Indices: 243415793--243415860 Score: 111
Period size: 26 Copynumber: 2.5 Consensus size: 27
243415783 TGGTGACGAG
243415793 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACT-A-TGTGCGTGCTGGAAATAT
243415822 ATGGCACTATGTGCGTGCTGG-AATAT
1 ATGGCACTATGTGCGTGCTGGAAATAT
243415848 ATGGCACTATGTG
1 ATGGCACTATGTG
243415861 TGCGATTTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
26 18 0.46
27 12 0.31
28 1 0.03
29 8 0.21
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (27 bp):
ATGGCACTATGTGCGTGCTGGAAATAT
Found at i:243415863 original size:24 final size:24
Alignment explanation
Indices: 243415847--243415961 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
243415837 TGCTGGAATA
243415847 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
243415871 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
243415895 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
243415919 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
243415943 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
243415962 ACATAATAAG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:243415975 original size:72 final size:72
Alignment explanation
Indices: 243415847--243415983 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
243415837 TGCTGGAATA
* ** * *
243415847 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
243415912 GATTTAC
66 GATTTAC
*
243415919 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
243415983 C
65 C
243415984 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:243418364 original size:38 final size:38
Alignment explanation
Indices: 243418305--243418399 Score: 145
Period size: 38 Copynumber: 2.4 Consensus size: 38
243418295 TCAATCATGC
*
243418305 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTCATAAT
* *
243418344 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
243418382 ACTGGGGCCGAAGCCTTT
1 ACT-GGGCCGAAGCCTTT
243418400 ACTGTAAACG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
38 27 0.52
39 25 0.48
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:243418654 original size:24 final size:23
Alignment explanation
Indices: 243418611--243418705 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
243418601 CCTAGCCTCT
243418611 TTTAATAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
243418633 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
*
243418657 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
243418680 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
243418703 TTT
1 TTT
243418706 TTCACTTCCT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
22 3 0.04
23 57 0.83
24 9 0.13
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:243418668 original size:46 final size:47
Alignment explanation
Indices: 243418590--243418706 Score: 168
Period size: 46 Copynumber: 2.5 Consensus size: 47
243418580 GCTTTATCAT
*
243418590 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT-A
*
243418638 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
243418684 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
243418707 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
46 35 0.54
47 18 0.28
48 12 0.18
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:243418782 original size:20 final size:20
Alignment explanation
Indices: 243418757--243418816 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
243418747 TATGATTACC
243418757 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
243418777 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
243418797 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
243418817 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:243418787 original size:11 final size:11
Alignment explanation
Indices: 243418757--243418811 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
243418747 TATGATTACC
243418757 TCATGTGCATA
1 TCATGTGCATA
*
243418768 TCA--TACATA
1 TCATGTGCATA
243418777 TCATGTGCATA
1 TCATGTGCATA
* *
243418788 TCA--TACATT
1 TCATGTGCATA
243418797 TCATGTGCATA
1 TCATGTGCATA
243418808 TCAT
1 TCAT
243418812 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:243418891 original size:25 final size:25
Alignment explanation
Indices: 243418859--243418906 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
243418849 ATACATAAAC
* * *
243418859 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
243418884 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
243418907 CATATATAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:243424085 original size:18 final size:18
Alignment explanation
Indices: 243424062--243424099 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
243424052 ACCATTGCCA
243424062 CTACCTTGCCCACGACCC
1 CTACCTTGCCCACGACCC
243424080 CTACCTTGCCCACGACCC
1 CTACCTTGCCCACGACCC
243424098 CT
1 CT
243424100 CTGTGGTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.55, G:0.11, T:0.18
Consensus pattern (18 bp):
CTACCTTGCCCACGACCC
Found at i:243426419 original size:29 final size:28
Alignment explanation
Indices: 243426375--243426460 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 28
243426365 TTCATATTTC
243426375 ATATTTCATAATACTGGGCCGAAGCCTTT
1 ATATTTCAT-ATACTGGGCCGAAGCCTTT
* *
243426404 TTATATTCATATACT--GCCGAAGCCTTC
1 ATAT-TTCATATACTGGGCCGAAGCCTTT
243426431 ATATTTCATATTACTGGGCCGAAGCCTTT
1 ATATTTCATA-TACTGGGCCGAAGCCTTT
243426460 A
1 A
243426461 CTGTAAACGG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
26 6 0.12
27 18 0.37
29 20 0.41
30 5 0.10
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (28 bp):
ATATTTCATATACTGGGCCGAAGCCTTT
Found at i:243426694 original size:24 final size:24
Alignment explanation
Indices: 243426643--243426760 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
243426633 GCTTTATCAT
*
243426643 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
243426668 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
243426692 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
243426714 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
243426738 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
243426761 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
22 19 0.22
23 6 0.07
24 50 0.57
25 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:243426721 original size:46 final size:46
Alignment explanation
Indices: 243426668--243426759 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
243426658 GCCTCTTTTA
243426668 ATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
* *
243426714 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
243426760 TCACTTCCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (46 bp):
ATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
Found at i:243426831 original size:9 final size:9
Alignment explanation
Indices: 243426817--243426872 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
243426807 ATCTCATGTG
243426817 CATATCATA
1 CATATCATA
*
243426826 CATATCATGTG
1 CATATCA--TA
243426837 CATATCATA
1 CATATCATA
*
243426846 CAT-TCATGTG
1 CATATCA--TA
243426856 CATATCATA
1 CATATCATA
243426865 CATATCAT
1 CATATCAT
243426873 TATCATAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
8 3 0.08
9 20 0.53
10 4 0.11
11 11 0.29
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (9 bp):
CATATCATA
Found at i:243426840 original size:11 final size:11
Alignment explanation
Indices: 243426810--243426863 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
243426800 TATGAACATC
243426810 TCATGTGCATA
1 TCATGTGCATA
*
243426821 TCA--TACATA
1 TCATGTGCATA
243426830 TCATGTGCATA
1 TCATGTGCATA
*
243426841 TCA--TACAT-
1 TCATGTGCATA
243426849 TCATGTGCATA
1 TCATGTGCATA
243426860 TCAT
1 TCAT
243426864 ACATATCATT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:243426879 original size:20 final size:20
Alignment explanation
Indices: 243426805--243426872 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
243426795 GCATTTATGA
*
243426805 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
243426825 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
243426845 ACAT-TCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
243426864 ACATATCAT
1 ACATATCAT
243426873 TATCATAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 19 0.41
20 27 0.59
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:243432855 original size:20 final size:20
Alignment explanation
Indices: 243432827--243432880 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
243432817 AAAAGGGGTC
*
243432827 ACACGCCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
243432847 ACACACCCGTGTGGCTTGGG
1 ACACACCCGTGTGGCTTGGG
243432867 ACACACCCGTGTGG
1 ACACACCCGTGTGG
243432881 GAAGGCCGTG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.15, C:0.31, G:0.35, T:0.19
Consensus pattern (20 bp):
ACACACCCGTGTGGCTTGGG
Found at i:243434907 original size:28 final size:29
Alignment explanation
Indices: 243434876--243435006 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
243434866 GTGACGAGAT
243434876 TGGCACTAAGTGTGCGTGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
243434904 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ****
243434933 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * *
243434962 TGGCACTATGTGTGCGGGCT-TAAATCTCA
1 TGGCACTAAGTGTGCGTGCTGGAAATAT-A
243434991 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
243435007 AAATCGAGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
28 26 0.31
29 59 0.69
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:243434943 original size:29 final size:28
Alignment explanation
Indices: 243434876--243434947 Score: 126
Period size: 28 Copynumber: 2.5 Consensus size: 28
243434866 GTGACGAGAT
*
243434876 TGGCACTAAGTGTGCGTGCTGGAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAATA
243434904 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAA-ATA
243434933 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
243434948 GAGCTCGAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 24 0.57
29 18 0.43
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCATGCTGGAAAATA
Found at i:243440663 original size:146 final size:147
Alignment explanation
Indices: 243440422--243440769 Score: 518
Period size: 146 Copynumber: 2.4 Consensus size: 147
243440412 CAAGATTCGT
* * * * * *
243440422 GAAAATGTTATATATGTGTGATGAGGCCTAATGGTCGATGTGATGGAATGTGAAAATGTATGTAT
1 GAAAATG-TATGTATATGTGATAAGGCCTAATGGCCGATGTGAT-GAATGCGAAAATGTATATAT
* * *
243440487 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAA
64 ATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATATATATGTGATAAGGCCTAA
*
243440552 TGGTCGATGCGATGAATGC
129 TGGCCGATGCGATGAATGC
243440571 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATATATA-
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATATATAT
* *
243440635 GTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATATATATGTGATAAGGCCTAATG
* *
243440700 GCCGATGTGGTGAATGC
131 GCCGATGCGATGAATGC
* * *
243440717 GAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAA
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
243440770 GTATAATTAG
Statistics
Matches: 182, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
146 124 0.68
147 19 0.10
148 32 0.18
149 7 0.04
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (147 bp):
GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTATATATAT
GTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATATATATGTGATAAGGCCTAATG
GCCGATGCGATGAATGC
Found at i:243440774 original size:49 final size:49
Alignment explanation
Indices: 243440422--243440769 Score: 518
Period size: 49 Copynumber: 7.1 Consensus size: 49
243440412 CAAGATTCGT
* * * * *
243440422 GAAAATGTTATATATGTGTGATGAGGCCTAATGGTCGATGTGATGGAATGT
1 GAAAATG-TATGTATATGTGATAAGGCCTAATGGCCGATGTGAT-GAATGC
*
243440473 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * * *
243440522 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
243440571 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
243440620 GAAAATGTATATATA-GTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
243440668 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
243440717 GAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
243440766 GAAA
1 GAAA
243440770 GTATAATTAG
Statistics
Matches: 274, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
48 45 0.16
49 190 0.69
50 32 0.12
51 7 0.03
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
Found at i:243440852 original size:48 final size:48
Alignment explanation
Indices: 243440782--243441023 Score: 328
Period size: 48 Copynumber: 5.0 Consensus size: 48
243440772 ATAATTAGGC
243440782 CGATGT-GTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
1 CGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
*
243440829 CGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGG--TAATGG
1 CGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
* *
243440875 CCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAATGC
1 -CGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
* *
243440924 CGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGG
1 CGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
* * * * * *
243440972 CCGATGTGATGAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAATGG
1 -CGATGTGGTGAATGCGAAA--GTATATGTATATGTGATAAGGCCTAATGG
243441023 C
1 C
243441024 TAATGTGAAT
Statistics
Matches: 176, Mismatches: 12, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
46 6 0.03
47 46 0.26
48 76 0.43
49 23 0.13
50 1 0.01
51 24 0.14
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
CGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG
Found at i:243440904 original size:174 final size:175
Alignment explanation
Indices: 243440602--243440944 Score: 539
Period size: 176 Copynumber: 2.0 Consensus size: 175
243440592 AAGGCCTAAT
* *
243440602 GGCCGATGTGATGAATGCGAAAATGTATATATAGTGATGAGGCCTAATGGCCGATGCGATGAATG
1 GGCCGATGTGATGAATGCGAAAATATATATATAGTGATAAGGCCTAATGGCCGATGCGATGAATG
*
243440667 CGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATA
66 CGAAAATATATGTATATGTGATAAGG-CTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATA
243440732 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
130 TGTGATAAGGCCTAAT-GCCGATGTGGTGAATGCGAAAGTATAATTA
* * * *
243440779 GGCCGATGTG-TGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGG-CGATGTGGTGAAT
1 GGCCGATGTGATGAATGCGAAAATATATATATA-GTGATAAGGCCTAATGGCCGATGCGATGAAT
* *
243440842 GCGAAAGTATATGTATATGTGATGAGG-TAATGGCCGATGTGGTGAATGCGAAAGTATATGTATA
65 GCGAAAATATATGTATATGTGATAAGGCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATA
* *
243440906 TGTGATGAGGCCTAATGCCGATGTGGTGAATGTGAAAGT
130 TGTGATAAGGCCTAATGCCGATGTGGTGAATGCGAAAGT
243440945 GTATGTATAT
Statistics
Matches: 154, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
173 22 0.14
174 52 0.34
176 54 0.35
177 26 0.17
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (175 bp):
GGCCGATGTGATGAATGCGAAAATATATATATAGTGATAAGGCCTAATGGCCGATGCGATGAATG
CGAAAATATATGTATATGTGATAAGGCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATAT
GTGATAAGGCCTAATGCCGATGTGGTGAATGCGAAAGTATAATTA
Found at i:243440951 original size:95 final size:96
Alignment explanation
Indices: 243440779--243441008 Score: 347
Period size: 95 Copynumber: 2.4 Consensus size: 96
243440769 AGTATAATTA
*
243440779 GGCCGATGT-GTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCGATGTGGTGAATG
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGCCGATGTGGTGAATG
*
243440843 CGAAAGTATATGTATATGTGATGAGG-TAAT
66 CGAAAGTATATGTATATGTGATAAGGCTAAT
*
243440873 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAATGCCGATGTGGTGAATG
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGCCGATGTGGTGAATG
* *
243440938 TGAAAGTGTATGTATATGTGATAAGGCCTAAT
66 CGAAAGTATATGTATATGTGATAAGG-CTAAT
* * *
243440970 GGCCGATGTGATGAATGTGAAAGTGTATATATATATGTG
1 GGCCGATGTGGTGAATGCGAAA--GTATATGTATATGTG
243441009 GTAAAGCCGA
Statistics
Matches: 123, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
94 9 0.07
95 76 0.62
97 24 0.20
99 14 0.11
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (96 bp):
GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGCCGATGTGGTGAATG
CGAAAGTATATGTATATGTGATAAGGCTAAT
Found at i:243441125 original size:35 final size:35
Alignment explanation
Indices: 243441086--243441154 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
243441076 TTCCGGGTGA
243441086 GACCGATGACTACGTGTGGAGATTATGTCCGGTAC
1 GACCGATGACTACGTGTGGAGATTATGTCCGGTAC
243441121 GACCGATGACTACGTGTGGAGATTATGTCCGGTA
1 GACCGATGACTACGTGTGGAGATTATGTCCGGTA
243441155 AGACTTCGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (35 bp):
GACCGATGACTACGTGTGGAGATTATGTCCGGTAC
Found at i:243443137 original size:40 final size:40
Alignment explanation
Indices: 243443086--243443264 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
243443076 CTTGTGGTTT
*
243443086 TATCCGG-CTAAGTTCCGAAGAGCATCCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
243443125 TATCCGGACTAAGTTCCGAAGAGCATTC-TGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
243443164 T-T-CGGACTAAGTTCCGAGGAGCATT-GTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
243443201 TAT-CGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* * * *
243443240 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
243443265 ATCATGCTGG
Statistics
Matches: 128, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
37 34 0.27
38 24 0.19
39 33 0.26
40 37 0.29
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:243443236 original size:76 final size:77
Alignment explanation
Indices: 243443093--243443239 Score: 253
Period size: 76 Copynumber: 1.9 Consensus size: 77
243443083 TTTTATCCGG
243443093 CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTGCTA
1 CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTGCTA
243443158 GTGATGTTCGGA
66 GTGATGTTCGGA
* *
243443170 CTAAGTTCCGAGGAGCAT-TGTGCTAGTGATGTAT-CGGACTAAGTTCCGAAGAGCATTCGTGCT
1 CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TGCT
243443233 AGTGATG
65 AGTGATG
243443240 CATCCGGGCT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
75 24 0.36
76 26 0.39
77 17 0.25
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (77 bp):
CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTGCTA
GTGATGTTCGGA
Found at i:243447227 original size:58 final size:60
Alignment explanation
Indices: 243447163--243447274 Score: 167
Period size: 58 Copynumber: 1.9 Consensus size: 60
243447153 AAAATGTTAT
* * *
243447163 TATGTGAT-AGGCCTAATGGCGATGGATGAATG-G-AAATGTATGTATATGTGATTATATA
1 TATGTGATGA-GCCTAATGCCGATCGATGAATGCGAAAATGTATATATATGTGATTATATA
243447221 TATGTGATGAGCCTAATGCCGATCGATGAATGCGAAAATGTATATATATGTGAT
1 TATGTGATGAGCCTAATGCCGATCGATGAATGCGAAAATGTATATATATGTGAT
243447275 GAGCCTAATG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
58 28 0.58
59 2 0.04
60 18 0.38
ACGTcount: A:0.33, C:0.08, G:0.26, T:0.33
Consensus pattern (60 bp):
TATGTGATGAGCCTAATGCCGATCGATGAATGCGAAAATGTATATATATGTGATTATATA
Found at i:243447282 original size:46 final size:49
Alignment explanation
Indices: 243447219--243447596 Score: 454
Period size: 46 Copynumber: 8.1 Consensus size: 49
243447209 TGTGATTATA
* *
243447219 TATATGTGATGA-GCCTAAT-GCCGAT-CGATGAATGCGAAAATGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
*
243447265 TATATGTGATGA-GCCTAATGG-CGATGCGATGAAT--GAAAATGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
243447310 TATATGTGA-AAGGCCTAATGGCCGATGCGATGAATGCG-AAATGTATG
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
* *
243447357 TATAT-TGAT-AGGCCTAATGGCCGATGCGATGAATGCGAAAGTCTATG
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
* *
243447404 TATATGTGATAAGGCCTAATGGCCGAT-CGATGAATGCGAAAGTATATG
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
* * * * *
243447452 TATA--TGATAAGGCCTAA-GGCCGATGTGGTGAATGTGAAAGTCTATG
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
*
243447498 TATATGTGATAAGGCCTAATGGCCGATTG-G-TGAATGTG-AAA-GTATG
1 TATATGTGATAAGGCCTAATGGCCGA-TGCGATGAATGCGAAAATGTATG
* * * *
243447544 TATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
243447592 TATAT
1 TATAT
243447597 ATGTGGTAAA
Statistics
Matches: 300, Mismatches: 13, Indels: 36
0.86 0.04 0.10
Matches are distributed among these distances:
44 3 0.01
45 49 0.16
46 125 0.42
47 39 0.13
48 59 0.20
49 23 0.08
50 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATG
Found at i:243447298 original size:149 final size:156
Alignment explanation
Indices: 243447060--243447365 Score: 436
Period size: 149 Copynumber: 2.0 Consensus size: 156
243447050 CGTGAAAATG
*
243447060 TATATATATGTGATGAGGCCTAATGGTCCGATTGCGTGAATGTGAAAATGTATGTATATATGTGA
1 TATATATATGTGATGAGGCCTAATGGTCCGATTGCGTGAATGCGAAAATGTA-GTATATATGTGA
* * *
243447125 TAAGGCTAATGGCGATGTGATGAATGTGAAAATGT-TAT-TATGTGATAGGCCTAATGG-CGATG
65 TAAGCCTAATGGCGATGCGATGAA--TGAAAATGTATATATATGTGAAAGGCCTAATGGCCGATG
243447187 -GATGAATG-GAAATGTATGTATATGTGAT
128 CGATGAATGCGAAATGTATGTATAT-TGAT
243447215 TATATATATGTGATGA-GCCTAAT-G-CCGA-T-CGATGAATGCGAAAATGTA-TATATATGTGA
1 TATATATATGTGATGAGGCCTAATGGTCCGATTGCG-TGAATGCGAAAATGTAGTATATATGTGA
* *
243447274 TGAGCCTAATGGCGATGCGATGAATGAAAATGTATGTATATGTGAAAGGCCTAATGGCCGATGCG
65 TAAGCCTAATGGCGATGCGATGAATGAAAATGTATATATATGTGAAAGGCCTAATGGCCGATGCG
243447339 ATGAATGCGAAATGTATGTATATTGAT
130 ATGAATGCGAAATGTATGTATATTGAT
243447366 AGGCCTAATG
Statistics
Matches: 139, Mismatches: 6, Indels: 16
0.86 0.04 0.10
Matches are distributed among these distances:
147 9 0.06
148 2 0.01
149 50 0.36
150 7 0.05
151 28 0.20
152 19 0.14
153 1 0.01
154 7 0.05
155 16 0.12
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (156 bp):
TATATATATGTGATGAGGCCTAATGGTCCGATTGCGTGAATGCGAAAATGTAGTATATATGTGAT
AAGCCTAATGGCGATGCGATGAATGAAAATGTATATATATGTGAAAGGCCTAATGGCCGATGCGA
TGAATGCGAAATGTATGTATATTGAT
Found at i:243447309 original size:105 final size:103
Alignment explanation
Indices: 243447114--243447318 Score: 306
Period size: 103 Copynumber: 2.0 Consensus size: 103
243447104 AAAATGTATG
* * * *
243447114 TATATATGTGATAAGGCTAATGGCGATGTGATGAATGTGAAAATGTTATTATGTGATAGGCCTAA
1 TATATATGTGATAAGCCTAATGCCGATGCGATGAATGCGAAAATGTTATTATGTGATAGGCCTAA
*
243447179 TGGCGATGGATGAATGGAAATGTATGTATATGTGATTA
66 TGGCGATGGATGAATGAAAATGTATGTATATGTGATTA
*
243447217 TATATATGTGATGAGCCTAATGCCGAT-CGATGAATGCGAAAATGTATATATATGTGAT-GAGCC
1 TATATATGTGATAAGCCTAATGCCGATGCGATGAATGCGAAAATGT-TAT-TATGTGATAG-GCC
243447280 TAATGGCGATGCGATGAATGAAAATGTATGTATATGTGA
63 TAATGGCGATG-GATGAATGAAAATGTATGTATATGTGA
243447319 AAGGCCTAAT
Statistics
Matches: 92, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
102 16 0.17
103 28 0.30
104 22 0.24
105 26 0.28
ACGTcount: A:0.34, C:0.07, G:0.27, T:0.32
Consensus pattern (103 bp):
TATATATGTGATAAGCCTAATGCCGATGCGATGAATGCGAAAATGTTATTATGTGATAGGCCTAA
TGGCGATGGATGAATGAAAATGTATGTATATGTGATTA
Found at i:243447439 original size:94 final size:95
Alignment explanation
Indices: 243447219--243447596 Score: 492
Period size: 94 Copynumber: 4.1 Consensus size: 95
243447209 TGTGATTATA
* *
243447219 TATATGTGATGA-GCCTAAT-GCCGATCGATGAATGCGAAAATGTATATATATGTGAT-GAGCCT
1 TATATGTGATAAGGCCTAATGGCCGATCGATGAATGCG-AAATGTATGTATATGTGATAG-GCCT
* *
243447281 AATGG-CGATGCGATGAA--TGAAAATGTATG
64 AATGGCCGATGCGATGAATGTGAAAGTCTATG
243447310 TATATGTGA-AAGGCCTAATGGCCGATGCGATGAATGCGAAATGTATGTATAT-TGATAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGAT-CGATGAATGCGAAATGTATGTATATGTGATAGGCCTA
*
243447373 ATGGCCGATGCGATGAATGCGAAAGTCTATG
65 ATGGCCGATGCGATGAATGTGAAAGTCTATG
*
243447404 TATATGTGATAAGGCCTAATGGCCGATCGATGAATGCGAAAGTATATGTATA--TGATAAGGCCT
1 TATATGTGATAAGGCCTAATGGCCGATCGATGAATGCGAAA-TGTATGTATATGTGAT-AGGCCT
* *
243447467 AA-GGCCGATGTGGTGAATGTGAAAGTCTATG
64 AATGGCCGATGCGATGAATGTGAAAGTCTATG
* * * *
243447498 TATATGTGATAAGGCCTAATGGCCGATTGGTGAATGTGAAA-GTATGTATATGTGATAAGCCTAA
1 TATATGTGATAAGGCCTAATGGCCGATCGATGAATGCGAAATGTATGTATATGTGATAGGCCTAA
* * *
243447562 TGGCCGATGTGATGAATGTGAAAGTGTATA
66 TGGCCGATGCGATGAATGTGAAAGTCTATG
243447592 TATAT
1 TATAT
243447597 ATGTGGTAAA
Statistics
Matches: 257, Mismatches: 17, Indels: 23
0.87 0.06 0.08
Matches are distributed among these distances:
90 1 0.00
91 29 0.11
92 40 0.16
93 18 0.07
94 135 0.53
95 34 0.13
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (95 bp):
TATATGTGATAAGGCCTAATGGCCGATCGATGAATGCGAAATGTATGTATATGTGATAGGCCTAA
TGGCCGATGCGATGAATGTGAAAGTCTATG
Found at i:243447585 original size:140 final size:139
Alignment explanation
Indices: 243447219--243447596 Score: 452
Period size: 140 Copynumber: 2.7 Consensus size: 139
243447209 TGTGATTATA
* * * *
243447219 TATATGTGAT-GAGCCTAAT-GCCGATCGATGAATGCGAAAATGTATATATATGTGATGAGCCTA
1 TATATGTGATAG-GCCTAATGGCCGATTGGTGAATGCG-AAA-GTATGTATATGTGATAAGCCTA
*
243447282 ATGG-CGATGCGATGAA--TGAAAATGTATGTATATGTGAAAGGCCTAATGGCCGATGCGATGAA
63 ATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGT-AAAGGCCTAATGGCCGATGCGATGAA
*
243447344 TGCGAAATGTATG
127 TGCGAAATCTATG
243447357 TATAT-TGATAGGCCTAATGGCCGA-TGCGATGAATGCGAAAGTCTATGTATATGTGATAAGGCC
1 TATATGTGATAGGCCTAATGGCCGATTG-G-TGAATGCGAAAG--TATGTATATGTGATAA-GCC
* * * *
243447420 TAATGGCCGAT-CGATGAATGCGAAAGTATATGTATATG-ATAAGGCCTAA-GGCCGATGTGGTG
61 TAATGGCCGATGCGATGAATGTGAAAGTGTATGTATATGTA-AAGGCCTAATGGCCGATGCGATG
*
243447482 AATGTGAAAGTCTATG
125 AATGCGAAA-TCTATG
*
243447498 TATATGTGATAAGGCCTAATGGCCGATTGGTGAATGTGAAAGTATGTATATGTGATAAGCCTAAT
1 TATATGTGAT-AGGCCTAATGGCCGATTGGTGAATGCGAAAGTATGTATATGTGATAAGCCTAAT
* *
243447563 GGCCGATGTGATGAATGTGAAAGTGTATATATAT
65 GGCCGATGCGATGAATGTGAAAGTGTATGTATAT
243447597 ATGTGGTAAA
Statistics
Matches: 208, Mismatches: 16, Indels: 30
0.82 0.06 0.12
Matches are distributed among these distances:
137 13 0.06
138 14 0.07
139 36 0.17
140 74 0.36
141 23 0.11
142 30 0.14
143 16 0.08
144 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (139 bp):
TATATGTGATAGGCCTAATGGCCGATTGGTGAATGCGAAAGTATGTATATGTGATAAGCCTAATG
GCCGATGCGATGAATGTGAAAGTGTATGTATATGTAAAGGCCTAATGGCCGATGCGATGAATGCG
AAATCTATG
Found at i:243452324 original size:39 final size:40
Alignment explanation
Indices: 243452281--243452447 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
243452271 CGGAATACAA
243452281 CCGGATATAACCACGT-GCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
243452320 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
243452360 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
243452400 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
243452440 CCGGATAT
1 CCGGATAT
243452448 CATTCAATTG
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 28 0.26
40 75 0.71
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:243455550 original size:112 final size:109
Alignment explanation
Indices: 243455394--243455614 Score: 399
Period size: 112 Copynumber: 2.0 Consensus size: 109
243455384 TTGCCATTCG
243455394 GCTACAATGGCTTCATTCAAATTATCGAAATAGTTCCGAATTCTTTGGAACACACAGAC-ACTTT
1 GCTACAATGGCTTCATTCAAATTATCGAAATAGTTCCGAATTCTTTGGAACACACAGACGAC-TT
243455458 TTGAACCTCAAACAATCGTCATCATCGATTTGAAACTCCGAGTCC
65 TTGAACCTCAAACAATCGTCATCATCGATTTGAAACTCCGAGTCC
243455503 GCTACAATGGGCTTCATTCAGAATTATCGAAATGAGTTCCGAATTCTTTGGAACACACAGACGAC
1 GCTACAAT-GGCTTCATTCA-AATTATCGAAAT-AGTTCCGAATTCTTTGGAACACACAGACGAC
243455568 TTTTGAACCTCAAACAATCGTCATCATCGATTTGAAACTCCGAGTCC
63 TTTTGAACCTCAAACAATCGTCATCATCGATTTGAAACTCCGAGTCC
243455615 TTGTTCGGAA
Statistics
Matches: 108, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
109 8 0.07
110 11 0.10
111 12 0.11
112 75 0.69
113 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (109 bp):
GCTACAATGGCTTCATTCAAATTATCGAAATAGTTCCGAATTCTTTGGAACACACAGACGACTTT
TGAACCTCAAACAATCGTCATCATCGATTTGAAACTCCGAGTCC
Found at i:243462613 original size:40 final size:39
Alignment explanation
Indices: 243462569--243462761 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
243462559 GTTCAAAACA
* * ** * *
243462569 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
243462609 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
243462649 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
243462688 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
243462727 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
243462762 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:243462680 original size:39 final size:39
Alignment explanation
Indices: 243462599--243462761 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
243462589 TATGGTAACC
* *
243462599 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
243462639 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
243462678 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
243462717 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
243462756 CGCACA
1 CGCACA
243462762 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:243470572 original size:38 final size:38
Alignment explanation
Indices: 243470517--243470660 Score: 193
Period size: 38 Copynumber: 3.8 Consensus size: 38
243470507 CCACAAATGC
*
243470517 TCGGGACTTAACCCGGATATCACACTCGCACAATTGCCT
1 TCGGG-CTTAGCCCGGATATCACACTCGCACAATTGCCT
* *
243470556 TCGGGCTTAGCTCGGATATCATAGCTCGCACAATTGCCT
1 TCGGGCTTAGCCCGGATATCACA-CTCGCACAATTGCCT
* *
243470595 TC-GGCTTAGCCCGGAT-TCACAATTCGCACAACTGCCT
1 TCGGGCTTAGCCCGGATATCAC-ACTCGCACAATTGCCT
*
243470632 TCGGGCTTAGCCCGGATATCACATTCGCA
1 TCGGGCTTAGCCCGGATATCACACTCGCA
243470661 TTCATTCACA
Statistics
Matches: 94, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
37 18 0.19
38 50 0.53
39 26 0.28
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.25
Consensus pattern (38 bp):
TCGGGCTTAGCCCGGATATCACACTCGCACAATTGCCT
Found at i:243473489 original size:71 final size:71
Alignment explanation
Indices: 243473405--243473568 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243473395 CGATTTGTCT
243473405 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243473470 CTTTCA
66 CTTTCA
243473476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243473541 CTTTCA
66 CTTTCA
243473547 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
243473569 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:243473606 original size:71 final size:70
Alignment explanation
Indices: 243473405--243473602 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
243473395 CGATTTGTCT
* * * *
243473405 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243473470 CTTTCA
65 CTTTCA
* * * *
243473476 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243473541 CTTTCA
65 CTTTCA
* *
243473547 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
243473603 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:243480593 original size:71 final size:71
Alignment explanation
Indices: 243480509--243480672 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
243480499 CGATTTGTCT
243480509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243480574 CTTTCA
66 CTTTCA
243480580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
243480645 CTTTCA
66 CTTTCA
243480651 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
243480673 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:243480710 original size:71 final size:70
Alignment explanation
Indices: 243480509--243480706 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
243480499 CGATTTGTCT
* * * *
243480509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243480574 CTTTCA
65 CTTTCA
* * * *
243480580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
243480645 CTTTCA
65 CTTTCA
* *
243480651 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
243480707 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:243483108 original size:38 final size:39
Alignment explanation
Indices: 243482965--243483163 Score: 278
Period size: 38 Copynumber: 5.2 Consensus size: 39
243482955 TGTGGTAACC
* * * *
243482965 CGCACAAATGCCTTCGGGACTTAACCCGGGTATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAATT
* *
243483005 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
243483044 CGCACAATTGCCTTCGGGCTTA-CCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
**
243483082 CG-ACCTTTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
* *
243483120 TGCACATTTGCCTT-GGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
243483158 CGCACA
1 CGCACA
243483164 TTCATACACA
Statistics
Matches: 146, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
37 17 0.12
38 62 0.42
39 50 0.34
40 17 0.12
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
Found at i:243490979 original size:39 final size:38
Alignment explanation
Indices: 243490936--243491055 Score: 170
Period size: 39 Copynumber: 3.1 Consensus size: 38
243490926 TGTGGTAACC
* *
243490936 CGCACAAATGCCTTCGGGACTTAACCGGGTATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAACCGGATATCACAACT
* *
243490975 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTA-ACCGGATATCACAACT
*
243491014 CGCACAATTGCCTTCGGGCTTAGCCGGATATCACAA-T
1 CGCACAATTGCCTTCGGGCTTAACCGGATATCACAACT
243491051 CGCAC
1 CGCAC
243491056 CTTTGCCTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 6 0.08
38 16 0.22
39 52 0.70
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAACCGGATATCACAACT
Found at i:243490999 original size:77 final size:77
Alignment explanation
Indices: 243490906--243491055 Score: 187
Period size: 78 Copynumber: 1.9 Consensus size: 77
243490896 CCGTTCAAAC
* * ** *
243490906 GCCTTCGGGACATAG-CCGGTTGTGGTAACCCGCACAAATGCCTTCGGGACTTAACCGGGTATCA
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGG-CTTAACCGGATATCA
243490970 CAACTCGCACAATT
65 CAA-TCGCACAATT
* * * *
243490984 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCGGATATCAC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCGGATATCAC
243491048 AATCGCAC
66 AATCGCAC
243491056 CTTTGCCTCA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
76 6 0.10
77 20 0.32
78 36 0.58
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (77 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAATGCCTTCGGGCTTAACCGGATATCAC
AATCGCACAATT
Found at i:243491094 original size:51 final size:50
Alignment explanation
Indices: 243491018--243491113 Score: 165
Period size: 51 Copynumber: 1.9 Consensus size: 50
243491008 ATAACTCGCA
*
243491018 CAATTGCCTTCGGGCTTAGCCGGATATCACAATCGCACCTTTGCCTCATAT
1 CAATTGCCTTCGGGCTTAGCCGGATATCA-AATCGCACATTTGCCTCATAT
*
243491069 CAATTGCCTTCGGGCTTAGCCGGATATCAATTCGCACATTTGCCT
1 CAATTGCCTTCGGGCTTAGCCGGATATCAAATCGCACATTTGCCT
243491114 TCGGGCTTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
50 14 0.33
51 29 0.67
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (50 bp):
CAATTGCCTTCGGGCTTAGCCGGATATCAAATCGCACATTTGCCTCATAT
Found at i:243491119 original size:36 final size:37
Alignment explanation
Indices: 243491072--243491146 Score: 134
Period size: 36 Copynumber: 2.0 Consensus size: 37
243491062 CTCATATCAA
243491072 TTGCCTTCGGGCTTAGCCGGATAT-CAATTCGCACAT
1 TTGCCTTCGGGCTTAGCCGGATATACAATTCGCACAT
243491108 TTGCCTTCGGGCTTAGCCGGATATCACAATTCGCACAT
1 TTGCCTTCGGGCTTAGCCGGATAT-ACAATTCGCACAT
243491146 T
1 T
243491147 CATACACATC
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 24 0.65
38 13 0.35
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (37 bp):
TTGCCTTCGGGCTTAGCCGGATATACAATTCGCACAT
Found at i:243491128 original size:87 final size:90
Alignment explanation
Indices: 243490979--243491143 Score: 282
Period size: 87 Copynumber: 1.9 Consensus size: 90
243490969 ACAACTCGCA
243490979 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCGGATA
1 CAATTGCCTTCGGGCTTAGCCCGGATATCA-AACTCGCACAATTGCCTTCGGGCTTAGCCGGATA
243491044 TCACAA-TCGCACCTTTGCCTCATAT
65 TCACAATTCGCACCTTTGCCTCATAT
* *
243491069 CAATTGCCTTCGGGCTTAG-CCGGATATC-AATTCGCACATTTGCCTTCGGGCTTAGCCGGATAT
1 CAATTGCCTTCGGGCTTAGCCCGGATATCAAACTCGCACAATTGCCTTCGGGCTTAGCCGGATAT
243491132 CACAATTCGCAC
66 CACAATTCGCAC
243491144 ATTCATACAC
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
87 38 0.53
88 6 0.08
89 9 0.12
90 19 0.26
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (90 bp):
CAATTGCCTTCGGGCTTAGCCCGGATATCAAACTCGCACAATTGCCTTCGGGCTTAGCCGGATAT
CACAATTCGCACCTTTGCCTCATAT
Found at i:243495138 original size:28 final size:29
Alignment explanation
Indices: 243495071--243495171 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
243495061 ATAGTGAATC
*
243495071 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
243495100 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
243495128 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
243495158 CGCACACTTAGTGC
1 CGCACACTTAGTGC
243495172 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:243506289 original size:40 final size:40
Alignment explanation
Indices: 243506185--243506401 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
243506175 AAGCCAAGTA
* * * *
243506185 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
243506224 CCTTC-GGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
243506263 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
243506303 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
243506343 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
243506383 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
243506402 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 6 0.04
39 32 0.20
40 125 0.77
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:243507678 original size:16 final size:16
Alignment explanation
Indices: 243507657--243507691 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
243507647 CATGAGAGCC
* *
243507657 TTTCTTTTTTTTTTCT
1 TTTCTTTCTCTTTTCT
243507673 TTTCTTTCTCTTTTCT
1 TTTCTTTCTCTTTTCT
243507689 TTT
1 TTT
243507692 TTTATCATCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
TTTCTTTCTCTTTTCT
Found at i:243516562 original size:40 final size:39
Alignment explanation
Indices: 243516397--243516580 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
243516387 AAATTGAATG
* * *
243516397 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
243516437 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
243516477 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
243516517 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
243516556 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
243516581 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:243516605 original size:80 final size:81
Alignment explanation
Indices: 243516437--243516625 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
243516427 GCTGGAAATT
* * * *
243516437 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
243516502 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
243516518 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
243516581 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
243516597 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
243516626 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:243525848 original size:40 final size:40
Alignment explanation
Indices: 243525773--243526055 Score: 421
Period size: 40 Copynumber: 7.2 Consensus size: 40
243525763 AACCCAAGTA
* *
243525773 CCTTCGGG-TTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
243525811 CCTTCGGGACTTAGCCCGGGTATATTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
243525851 CCTTCAGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
243525891 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
243525931 CCTTCGGGACTTAGCCTGGATATATTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
243525971 CCTTCGGG--TTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
243526009 CCTTTGAGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
243526049 CCTTCGG
1 CCTTCGG
243526056 ATCTGTAACG
Statistics
Matches: 218, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
38 42 0.19
39 4 0.02
40 172 0.79
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:243527780 original size:28 final size:28
Alignment explanation
Indices: 243527748--243527811 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
243527738 ATTACTAGAG
*
243527748 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
243527776 ATA-CCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
243527803 ATACCCCTA
1 ATACCCCTA
243527812 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 25 0.76
28 8 0.24
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:243527975 original size:27 final size:28
Alignment explanation
Indices: 243527917--243528006 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
243527907 AGGAAGCGTC
*
243527917 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
* **
243527945 CTGGTGGCCCTGCCAC-GTATATCTGTT
1 CTGGTGGCACTGCCACAAAATATCTGTT
243527972 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
243528001 CTGGTG
1 CTGGTG
243528007 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Done.