Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 769 of 770
Found at i:244161886 original size:38 final size:39
Alignment explanation
Indices: 244161773--244161915 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
244161763 CCGCACAAAG
*
244161773 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
244161813 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
244161852 GCCTTCGGGCTTAGCCCGG-TATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
244161890 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
244161916 TCGAACATTC
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:244161894 original size:77 final size:79
Alignment explanation
Indices: 244161733--244161914 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
244161723 TCGTTCAAAC
* * **
244161733 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
244161798 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
244161813 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
244161876 CAATTTGCACAATT
66 CAATTTGCACAATT
244161890 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
244161915 CTCGAACATT
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:244169425 original size:28 final size:28
Alignment explanation
Indices: 244169393--244169462 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
244169383 AATGAGATTG
*
244169393 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
244169421 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
244169449 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
244169463 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:244176950 original size:32 final size:34
Alignment explanation
Indices: 244176876--244176950 Score: 102
Period size: 32 Copynumber: 2.3 Consensus size: 34
244176866 GCCTTCTTCT
244176876 TCTCGAGCTTTACCCGTCGATCTTTTGCGATAGA
1 TCTCGAGCTTTACCCGTCGATCTTTTGCGATAGA
* *
244176910 AC-GGAGCTTTA-CCGTCGATCTTTTGCGATAG-
1 TCTCGAGCTTTACCCGTCGATCTTTTGCGATAGA
*
244176941 TCTCTAGCTT
1 TCTCGAGCTT
244176951 CAAATTCAGC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
31 1 0.03
32 25 0.71
33 8 0.23
34 1 0.03
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.36
Consensus pattern (34 bp):
TCTCGAGCTTTACCCGTCGATCTTTTGCGATAGA
Found at i:244179338 original size:28 final size:27
Alignment explanation
Indices: 244179275--244179344 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
244179265 ATAGTGAGTC
*
244179275 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
244179302 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
244179330 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
244179345 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:244185232 original size:29 final size:29
Alignment explanation
Indices: 244185140--244185232 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
244185130 TGACGAGATT
* *
244185140 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* *
244185169 GGCTCTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
244185198 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
244185227 GGCACT
1 GGCACT
244185233 GGGTGTGCGA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:244185238 original size:29 final size:29
Alignment explanation
Indices: 244185177--244185245 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
244185167 AAGGCTCTAA
* * *
244185177 GTGTGCATGCTGGAAAAATATGACACTAT
1 GTGTGCAAGCTGGAAAAATACGACACTAG
* *
244185206 GTGTGCAAGCTGGAAAAATACGGCACTGG
1 GTGTGCAAGCTGGAAAAATACGACACTAG
*
244185235 GTGTGCGAGCT
1 GTGTGCAAGCT
244185246 CGGAGGTATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (29 bp):
GTGTGCAAGCTGGAAAAATACGACACTAG
Found at i:244195653 original size:40 final size:40
Alignment explanation
Indices: 244195598--244195821 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
244195588 TATTCGGATG
244195598 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
244195638 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
244195681 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
244195721 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
244195761 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
244195801 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
244195822 AATTGGGTTT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:244195741 original size:83 final size:80
Alignment explanation
Indices: 244195602--244195821 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
244195592 CGGATGATAT
* **
244195602 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
244195667 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
244195685 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
244195750 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
244195765 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
244195822 AATTGGGTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:244201146 original size:26 final size:26
Alignment explanation
Indices: 244201110--244201219 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
244201100 TGATACAAAT
244201110 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
244201136 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
244201162 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
244201188 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
244201214 TGATAA
1 TGATAA
244201220 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:244202752 original size:25 final size:25
Alignment explanation
Indices: 244202704--244202752 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
244202694 ACAGTTTTAC
244202704 CCCTAGGAGATAAATTACCGAAATA
1 CCCTAGGAGATAAATTACCGAAATA
* *
244202729 CCCTAGG-GTTAAATTGACCTAAAT
1 CCCTAGGAGATAAATT-ACCGAAAT
244202753 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGAGATAAATTACCGAAATA
Found at i:244206934 original size:51 final size:52
Alignment explanation
Indices: 244206879--244206987 Score: 168
Period size: 51 Copynumber: 2.1 Consensus size: 52
244206869 TGATACAAAT
244206879 TGATAATAGGTTAGGTAAATGTTCCATGA-AAT-GGTTAGGTAAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGT-AAATGTTCCA
* * *
244206930 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
244206982 TGATAA
1 TGATAA
244206988 GAATTTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
51 27 0.51
52 18 0.34
53 8 0.15
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTCCA
Found at i:244206949 original size:26 final size:26
Alignment explanation
Indices: 244206879--244206987 Score: 168
Period size: 26 Copynumber: 4.2 Consensus size: 26
244206869 TGATACAAAT
*
244206879 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
244206905 TGA-AAT-GGTTAGGTAAAATGTTCCA
1 TGATAATGGGTTAGGT-AAATGTTCCA
*
244206930 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
244206956 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
244206982 TGATAA
1 TGATAA
244206988 GAATTTCATG
Statistics
Matches: 79, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
24 8 0.10
25 16 0.20
26 47 0.59
27 8 0.10
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:244208500 original size:24 final size:25
Alignment explanation
Indices: 244208464--244208511 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
244208454 ACAGTTTTAC
244208464 CCCTAGAGATAAATT-ACCGAAATA
1 CCCTAGAGATAAATTGACCGAAATA
* * *
244208488 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGAGATAAATTGACCGAAAT
244208512 GCATTTTGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (25 bp):
CCCTAGAGATAAATTGACCGAAATA
Found at i:244211627 original size:40 final size:39
Alignment explanation
Indices: 244211561--244211706 Score: 147
Period size: 40 Copynumber: 3.8 Consensus size: 39
244211551 AAATTGAATG
* *
244211561 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGTAATT
* * ***
244211600 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGTAATT
* *
244211640 ATATCCGGGCTAAGACCCGAAGGC-ATTCG-TGGGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCT-GGTAATT
*
244211678 CTATCCGGGCTAAGACCCGAAGGC-ATTTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTTG
244211707 TGCACGTGAT
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
37 1 0.01
38 31 0.35
39 16 0.18
40 41 0.46
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGTAATT
Found at i:244223883 original size:68 final size:66
Alignment explanation
Indices: 244223811--244223982 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
244223801 CATCATGTGT
* * * *
244223811 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
244223874 TGTAG
62 TGTAG
** * *
244223879 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
244223944 AG
65 AG
* * * *
244223946 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
244223983 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:244223916 original size:64 final size:64
Alignment explanation
Indices: 244223835--244224018 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
244223825 AGACATTATG
* * *
244223835 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
244223899 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
244223964 AA
63 AA
* * *
244223966 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
244224019 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:244225092 original size:2 final size:2
Alignment explanation
Indices: 244225085--244225115 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
244225075 TCATGACATG
244225085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
244225116 CTAGTCTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:244229064 original size:46 final size:43
Alignment explanation
Indices: 244229005--244229118 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 43
244228995 ACAGGACAGA
* *
244229005 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATT-GAG
* *
244229051 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGAG
* **
244229094 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
244229119 GTCAAAGACA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
43 24 0.40
44 10 0.17
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (43 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGAG
Found at i:244229110 original size:43 final size:45
Alignment explanation
Indices: 244229005--244229137 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 45
244228995 ACAGGACAGA
* * *
244229005 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * *
244229051 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATT-GAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
** * * *
244229094 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
244229138 CAGGATATTG
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
43 25 0.35
44 11 0.15
45 9 0.12
46 27 0.38
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.27
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:244237767 original size:50 final size:50
Alignment explanation
Indices: 244237593--244237883 Score: 320
Period size: 50 Copynumber: 5.8 Consensus size: 50
244237583 ATTGTGAGTA
* * * * *
244237593 CACGTGTGTAGTACTAAGTGCA-GCTACTACATGTACCATACT-GTTAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGT
* * * * * ** *
244237642 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATG-GTGAGGT
*
244237693 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
*
244237743 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
* * * *
244237793 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGT-TGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
* * * *
244237842 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
244237884 AGCTTCGGCT
Statistics
Matches: 207, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
49 60 0.29
50 107 0.52
51 40 0.19
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
Found at i:244242272 original size:18 final size:18
Alignment explanation
Indices: 244242249--244242285 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
244242239 AGAGATGGCT
*
244242249 TGAATTATTAAATGATTA
1 TGAATTAATAAATGATTA
*
244242267 TGAATTAATAATTGATTA
1 TGAATTAATAAATGATTA
244242285 T
1 T
244242286 CATCCTGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (18 bp):
TGAATTAATAAATGATTA
Found at i:244265288 original size:46 final size:47
Alignment explanation
Indices: 244265221--244265350 Score: 217
Period size: 47 Copynumber: 2.8 Consensus size: 47
244265211 TGTAACCCGC
* * * *
244265221 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-CGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
244265267 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
244265314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
244265351 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 38 0.48
47 41 0.52
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
Found at i:244265802 original size:30 final size:30
Alignment explanation
Indices: 244265768--244265827 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
244265758 CCTTAATACG
244265768 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
244265798 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
244265828 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:244274165 original size:40 final size:40
Alignment explanation
Indices: 244274120--244274284 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
244274110 CGGAATATAA
244274120 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
244274160 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
244274200 CCGG--ATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
244274238 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
244274277 CCGGATAT
1 CCGGATAT
244274285 CATTCAATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 30 0.29
39 14 0.14
40 59 0.57
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:244274268 original size:78 final size:77
Alignment explanation
Indices: 244274136--244274283 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 77
244274126 ATAATCACGT
*
244274136 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
244274201 CGGATAGCCACTA
65 CGGATAGCCACTA
* * ** * *
244274214 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
244274277 CCGGATA
64 CCGGATA
244274284 TCATTCAATT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
77 16 0.26
78 45 0.74
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (77 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATAGCCACTA
Found at i:244275124 original size:17 final size:19
Alignment explanation
Indices: 244275101--244275146 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
244275091 AAGAAGCATG
244275101 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
244275119 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
244275137 AATCATGCTC
1 AATCATGCTC
244275147 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:244283500 original size:28 final size:28
Alignment explanation
Indices: 244283468--244283566 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
244283458 GCAATAAGCC
*
244283468 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
244283496 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
244283524 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
244283553 CGCACACTTAGTGC
1 CGCACACTTAGTGC
244283567 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:244296450 original size:49 final size:48
Alignment explanation
Indices: 244296374--244296485 Score: 138
Period size: 49 Copynumber: 2.3 Consensus size: 48
244296364 AGAAATTTCA
* * **
244296374 GCACTATGTGTGCAAGGTTATGCGGCACTATGTGTGC-A-AAAACTAAGTG
1 GCACTATGTGTGCGAGATTACACGGCACTATGTGTGCGAGAAAAC---GTG
*
244296423 GCACTATGTGTGCGAGATTACATGGCACTATGTGTGCGAGAAAACGTG
1 GCACTATGTGTGCGAGATTACACGGCACTATGTGTGCGAGAAAACGTG
244296471 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
244296486 ATAAGTAAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
48 18 0.32
49 32 0.57
50 1 0.02
51 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
GCACTATGTGTGCGAGATTACACGGCACTATGTGTGCGAGAAAACGTG
Found at i:244296453 original size:24 final size:24
Alignment explanation
Indices: 244296397--244296485 Score: 110
Period size: 24 Copynumber: 3.7 Consensus size: 24
244296387 AAGGTTATGC
244296397 GGCACTATGTGTGC-A-AAAACTAAGT
1 GGCACTATGTGTGCGAGAAAAC--A-T
**
244296422 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
244296446 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACAT
244296470 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
244296486 ATAAGTAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
24 38 0.67
25 15 0.26
26 1 0.02
27 3 0.05
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:244296500 original size:49 final size:48
Alignment explanation
Indices: 244296397--244296509 Score: 133
Period size: 49 Copynumber: 2.3 Consensus size: 48
244296387 AAGGTTATGC
* *
244296397 GGCACTATGTGTGC-AAAAACTAAGTGGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAAAAAC--AGTGGCACTATGTGTGCGAGATAACAA
*
244296446 GGCACTATGTGTGCGAGAAAAC-GTGGCACTATGTGTGCGA-ATAAGTAA
1 GGCACTATGTGTGCGA-AAAACAGTGGCACTATGTGTGCGAGATAA-CAA
244296494 GAGCACTATGTGTGCG
1 G-GCACTATGTGTGCG
244296510 GACTTTCAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
47 3 0.05
48 20 0.35
49 28 0.49
50 1 0.02
51 5 0.09
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (48 bp):
GGCACTATGTGTGCGAAAAACAGTGGCACTATGTGTGCGAGATAACAA
Found at i:244299087 original size:43 final size:44
Alignment explanation
Indices: 244299034--244299210 Score: 152
Period size: 43 Copynumber: 4.1 Consensus size: 44
244299024 TGAAGGTTAG
*
244299034 ATCTGCTATCTTCGATCTGTTCCCTATAAACA-CGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
* *
244299077 ATCTGCTATC-TC-AACTTGTTCCCTATAAACACA-GGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACATAGGGATGCCAA
** * * * * * * *
244299117 ATGCTGAAAATCTTCAATCTGCTTCGCTGTAAGCATAGGAATGTCAG
1 AT-CTG-CTATCTTCGATCTG-TTCCCTATAAACATAGGGATGCCAA
*
244299164 ATCTACTATCTT-GATCTGTTCCCTATAAACATAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
244299207 ATCT
1 ATCT
244299211 TGTTTCTTTG
Statistics
Matches: 103, Mismatches: 21, Indels: 20
0.72 0.15 0.14
Matches are distributed among these distances:
40 2 0.02
41 5 0.05
42 27 0.26
43 37 0.36
44 18 0.17
45 10 0.10
46 2 0.02
47 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACATAGGGATGCCAA
Found at i:244301108 original size:46 final size:46
Alignment explanation
Indices: 244301055--244301230 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
244301045 TATTTGGGCA
244301055 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
244301101 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
244301148 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
244301194 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
244301231 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:244301210 original size:93 final size:93
Alignment explanation
Indices: 244301051--244301222 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
244301041 GGGATATTTG
* *
244301051 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
244301116 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
244301144 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
244301209 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
244301223 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:244303407 original size:17 final size:17
Alignment explanation
Indices: 244303385--244303419 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
244303375 ACCAAAGTGT
244303385 ACTTATAATGGAATTTC
1 ACTTATAATGGAATTTC
244303402 ACTTATAATGGAATTTC
1 ACTTATAATGGAATTTC
244303419 A
1 A
244303420 TGAGATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.40
Consensus pattern (17 bp):
ACTTATAATGGAATTTC
Found at i:244304179 original size:15 final size:15
Alignment explanation
Indices: 244304159--244304227 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
244304149 GTATCTTGGG
244304159 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
244304174 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
244304189 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
244304204 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
244304219 TTTCTTTAT
1 TTTCTTTAT
244304228 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:244304228 original size:30 final size:30
Alignment explanation
Indices: 244304150--244304237 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
244304140 CATAGTATCG
* * * *
244304150 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
244304180 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
244304210 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
244304238 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:244309752 original size:40 final size:39
Alignment explanation
Indices: 244309707--244309836 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
244309697 CGGAATATAA
244309707 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
244309747 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
244309787 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
244309827 CCGGATATAA
1 CCGGATATAA
244309837 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:244309851 original size:40 final size:40
Alignment explanation
Indices: 244309723--244309874 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
244309713 ATAACCATGT
* * *
244309723 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
244309763 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
244309803 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
244309843 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
244309875 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:244309857 original size:80 final size:80
Alignment explanation
Indices: 244309723--244309872 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
244309713 ATAACCATGT
*
244309723 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
244309787 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
244309803 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
244309866 CCCGGAT
64 CCCGGAT
244309873 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:244318245 original size:79 final size:81
Alignment explanation
Indices: 244318124--244318315 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
244318114 GGATATAACG
* * **
244318124 ACTCGCTCGAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATC
* *
244318187 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
244318204 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
** *
244318267 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
244318283 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
244318316 CATCATTCAA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.56
80 40 0.41
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:244318315 original size:40 final size:40
Alignment explanation
Indices: 244318124--244318315 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
244318114 GGATATAACG
* * ** *
244318124 ACTCGCTCGAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
244318164 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
244318204 ACTCGCAC-AAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
244318243 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
244318283 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAAAGCCTTCGGGACTTAGCCCGGA
244318316 CATCATTCAA
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 87 0.68
41 8 0.06
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:244331145 original size:40 final size:40
Alignment explanation
Indices: 244331100--244331265 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
244331090 CGGAATATAA
244331100 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
244331140 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
244331180 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
244331219 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
244331258 CCGGATAT
1 CCGGATAT
244331266 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 45 0.43
40 60 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:244336483 original size:22 final size:22
Alignment explanation
Indices: 244336455--244336577 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
244336445 GTGTATATAT
244336455 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
244336477 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
244336501 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
* *** ***
244336524 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
244336548 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
244336571 ATGTGAT
1 ATGTGAT
244336578 GAATGTGAAA
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:244336519 original size:47 final size:47
Alignment explanation
Indices: 244336399--244336634 Score: 427
Period size: 47 Copynumber: 5.0 Consensus size: 47
244336389 ATGTATGAGA
*
244336399 TGTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
244336446 TGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
244336495 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
244336542 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
* *
244336589 AGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
244336635 CATATGTGTG
Statistics
Matches: 184, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
47 138 0.75
49 46 0.25
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
Found at i:244336721 original size:18 final size:18
Alignment explanation
Indices: 244336698--244336733 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
244336688 GTGTGATATG
*
244336698 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
244336716 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
244336734 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:244336726 original size:123 final size:123
Alignment explanation
Indices: 244336591--244336836 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
244336581 TGTGAAAGAG
244336591 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
244336656 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
244336714 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
*
244336779 TGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
244336837 GAATGGCTAA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.32
Consensus pattern (123 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:244336737 original size:66 final size:69
Alignment explanation
Indices: 244336650--244336788 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
244336640 GTGTGATATG
*
244336650 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
244336712 CCTA
66 CCTA
* *
244336716 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
244336781 GTAAAGCC
60 GTAAAGCC
244336789 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:244336803 original size:48 final size:48
Alignment explanation
Indices: 244336749--244336900 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
244336739 CGATGTGATG
*
244336749 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
244336797 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
244336845 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
244336893 AATGTGAA
1 AATGTGAA
244336901 TGTTGTAACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:244336840 original size:171 final size:170
Alignment explanation
Indices: 244336544--244336884 Score: 503
Period size: 171 Copynumber: 2.0 Consensus size: 170
244336534 TGTGAAAGTG
244336544 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
*
244336609 TAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
66 TAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
244336674 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
131 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
* * * *
244336714 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGT-ATAT
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTG-AA-AGA-GTAT-ATATGTGATAA
* * *
244336778 GTG-GTAA-AGCCGAATG-GCT-AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGA
62 G-GCCTAATAGCCG-ATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGA
* *
244336839 ATGGCTAATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCC
125 ATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
244336885 GAATGGCTAA
Statistics
Matches: 155, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
170 40 0.26
171 87 0.56
172 8 0.05
173 13 0.08
174 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (170 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
Found at i:244337003 original size:37 final size:37
Alignment explanation
Indices: 244336953--244337039 Score: 174
Period size: 37 Copynumber: 2.4 Consensus size: 37
244336943 TTCCGGGTGA
244336953 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
1 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
244336990 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
1 GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
244337027 GTCCGGGTAAGAC
1 GTCCGGGTAAGAC
244337040 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.23
Consensus pattern (37 bp):
GTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
Found at i:244338989 original size:40 final size:40
Alignment explanation
Indices: 244338943--244339203 Score: 255
Period size: 40 Copynumber: 6.5 Consensus size: 40
244338933 TGAATGATAC
**
244338943 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * *
244338983 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
* * * *
244339023 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
244339063 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
244339102 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
244339142 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
*
244339182 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
244339204 ATCATGCTGG
Statistics
Matches: 194, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
39 23 0.12
40 165 0.85
41 6 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:244343905 original size:59 final size:60
Alignment explanation
Indices: 244343809--244343941 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
244343799 GACAAGATTG
* * *
244343809 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
244343869 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
244343928 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
244343942 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:244343954 original size:29 final size:29
Alignment explanation
Indices: 244343839--244343941 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
244343829 AAAATTGTAC
*
244343839 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
244343868 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
244343898 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
244343927 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
244343942 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:244349512 original size:16 final size:16
Alignment explanation
Indices: 244349491--244349523 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
244349481 TGAAGTGTTG
244349491 TGGCATAAACACGGAA
1 TGGCATAAACACGGAA
244349507 TGGCATAAACACGGAA
1 TGGCATAAACACGGAA
244349523 T
1 T
244349524 TGAAGAAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (16 bp):
TGGCATAAACACGGAA
Found at i:244357305 original size:17 final size:17
Alignment explanation
Indices: 244357283--244357322 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
244357273 ACCATACTAC
244357283 AAATTCTTTCAACTCCA
1 AAATTCTTTCAACTCCA
244357300 AAATTCTTTCAACTCCA
1 AAATTCTTTCAACTCCA
244357317 AAATTC
1 AAATTC
244357323 CTACAAGCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.35
Consensus pattern (17 bp):
AAATTCTTTCAACTCCA
Found at i:244359390 original size:71 final size:71
Alignment explanation
Indices: 244359239--244359728 Score: 301
Period size: 71 Copynumber: 7.0 Consensus size: 71
244359229 NNNNNNNNNN
* * * * * *
244359239 AAATTGAAAATACCTCGGCGTTGACCT-AGGCTCAACTCGCCT-TCAC-ATACGAGTTGATTTTG
1 AAATTAAAAATACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
244359301 -AAACAG
65 AAAACAG
*
244359307 AATTGATTAAAATTA-CTCAGCGTGTCCTGAGGCTCAAC-CACCTCTCGCAATATGAGTTGATTT
1 AA---ATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT
244359370 TTGAAAACAG
62 TTGAAAACAG
* ** **
244359380 AAATTAAAAATACCTCAGCATGT-CTGAGGCTCAACTCATTTCTCAAAATATGAGTTGAATTTTT
1 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-----
*
244359444 TTTTGAAGACAG
60 TTTTGAAAACAG
* *
244359456 AAATTAAAAATACCTCAGCATGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTAAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
244359520 GAAAAAGTAG
64 G-AAAA-CAG
* * * *** * ** * * * * *
244359530 AAATTAAAAGGTTCAACC-CA-CCTCT-C-GCAATATGAGTTGA-TTCTTG-AACA--A--CG--
1 AAATTAAAA--AT--ACCTCAGCGTGTCCTG-AGGCTCAACTCACCTCTCGCAATATGAGTTGAT
244359583 TTTGAAAACA-
61 TTTGAAAACAG
* *
244359593 AAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTG
1 AAATT-AAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG
*
244359658 AAAACAA
65 AAAACAG
* *
244359665 AAATTGAAAATACCTCAGCGTG--C-GAGGCTCAACTCA-CTCTAGCAATATGAGTTGATTTTGA
1 AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
244359726 AAA
66 AAA
244359729 AAAAAAATTA
Statistics
Matches: 326, Mismatches: 57, Indels: 79
0.71 0.12 0.17
Matches are distributed among these distances:
60 3 0.01
61 2 0.01
62 3 0.01
63 11 0.03
64 10 0.03
65 7 0.02
66 4 0.01
67 27 0.08
68 16 0.05
69 11 0.03
70 40 0.12
71 70 0.21
72 19 0.06
73 17 0.05
74 17 0.05
76 33 0.10
77 3 0.01
78 32 0.10
79 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (71 bp):
AAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
AAACAG
Found at i:244359649 original size:215 final size:200
Alignment explanation
Indices: 244359369--244359901 Score: 538
Period size: 180 Copynumber: 2.7 Consensus size: 200
244359359 TGAGTTGATT
* **
244359369 TTTGAAAACAGAAATTAAAAATACCTCAGCATGTCTGAGGCTCAACTCATTTCTCAAAATATGAG
1 TTTGAAAACAGAAATTAAAAATACCTCAGCATGCCTGAGGCTCAACTCACCTCTCAAAATATGAG
* *
244359434 TTGAATTTTTTTTTGAAGACAGAAATTAAAAATACCTCAGCATGTGACCGAGGCTCAACTCACCT
66 TTGAA------TTTGAAAACAAAAATTAAAAATACCTCAGC--GTG--CGAGGCTCAACTCA-CT
* * * *
244359499 CTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATG
120 CTAGCAATATGAGCTGATTTTGAAAAA-AAAAAATTAAAA-GCT-AACCCACCTCTCGCAATATG
244359564 AGTTGATTCTTGAACAACG
182 AGTTGATTCTTGAACAACG
* **
244359583 TTTGAAAACA-AAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAACAGAAATT-AAAAATACCTCAGCATG-CCTGAGGCTCAACTCACCTCTCAAAATATG
*
244359647 AGTTGAATTTGAAAACAAAAATTGAAAATACCTCAGCGTGCGAGGCTCAACTCACTCTAGCAATA
64 AGTTGAATTTGAAAACAAAAATTAAAAATACCTCAGCGTGCGAGGCTCAACTCACTCTAGCAATA
* *
244359712 TGAGTTGATTTTGAAAAAAAAAAATTAAAAGCTAACTCACCTCTCGCAATATGA---G-----T-
129 TGAGCTGATTTTGAAAAAAAAAAATTAAAAGCTAACCCACCTCTCGCAATATGAGTTGATTCTTG
244359768 ---AA--
194 AACAACG
* **
244359770 TTT-AAAACA-AAATT-AAAATACCTCA--AGTGCCCGAGGCTCAACTCA-CTCTCGCAATATGA
1 TTTGAAAACAGAAATTAAAAATACCTCAGCA-TGCCTGAGGCTCAACTCACCTCTCAAAATATGA
* *
244359829 GTTGATTTTGAAAAC-AAAATT-AAAATACCTCA-CGTGTCTGAGGCTCAACTCACTCTCGCAAT
65 GTTGAATTTGAAAACAAAAATTAAAAATACCTCAGCGTG-C-GAGGCTCAACTCACTCTAGCAAT
*
244359891 ATGAGTTGATT
128 ATGAGCTGATT
244359902 AAAACACAAA
Statistics
Matches: 295, Mismatches: 19, Indels: 44
0.82 0.05 0.12
Matches are distributed among these distances:
178 4 0.01
179 12 0.04
180 39 0.13
181 28 0.09
182 15 0.05
183 2 0.01
184 11 0.04
186 11 0.04
187 3 0.01
189 2 0.01
193 1 0.00
198 1 0.00
201 20 0.07
202 2 0.01
203 10 0.03
204 27 0.09
205 14 0.05
207 3 0.01
209 27 0.09
213 5 0.02
214 26 0.09
215 32 0.11
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (200 bp):
TTTGAAAACAGAAATTAAAAATACCTCAGCATGCCTGAGGCTCAACTCACCTCTCAAAATATGAG
TTGAATTTGAAAACAAAAATTAAAAATACCTCAGCGTGCGAGGCTCAACTCACTCTAGCAATATG
AGCTGATTTTGAAAAAAAAAAATTAAAAGCTAACCCACCTCTCGCAATATGAGTTGATTCTTGAA
CAACG
Found at i:244359719 original size:67 final size:71
Alignment explanation
Indices: 244359583--244359734 Score: 233
Period size: 67 Copynumber: 2.2 Consensus size: 71
244359573 TTGAACAACG
*
244359583 TTTGAAAAC-AAAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAACAAAAATTGAAAAATACCTCAGCGTGA-CTGAGGCTCAACTCACCTCTAGCAATATG
244359647 AGTTGAA
65 AGTTGAA
244359654 TTTGAAAACAAAAATTG-AAAATACCTCAGCGTG-C-GAGGCTCAACTCA-CTCTAGCAATATGA
1 TTTGAAAACAAAAATTGAAAAATACCTCAGCGTGACTGAGGCTCAACTCACCTCTAGCAATATGA
*
244359715 GTTGAT
66 GTTGAA
*
244359721 TTTGAAAAAAAAAA
1 TTTGAAAACAAAAA
244359735 ATTAAAAGCT
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
67 31 0.40
68 13 0.17
69 1 0.01
71 25 0.32
72 7 0.09
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.24
Consensus pattern (71 bp):
TTTGAAAACAAAAATTGAAAAATACCTCAGCGTGACTGAGGCTCAACTCACCTCTAGCAATATGA
GTTGAA
Found at i:244359854 original size:66 final size:66
Alignment explanation
Indices: 244359745--244359986 Score: 336
Period size: 66 Copynumber: 3.7 Consensus size: 66
244359735 ATTAAAAGCT
* *
244359745 AACTCACCTCTCGCAATATGAG-T-AATTT-AAAACAAAATTAAAATACCTCAAGTGCCCGAGGC
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAATACCTCACGTG-CCGAGGC
244359807 TC
65 TC
*
244359809 AACTCA-CTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAATACCTCACGTGTCTGAGGC
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAATACCTCACGTG-CCGAGGC
244359873 TC
65 TC
*
244359875 AACTCA-CTCTCGCAATATGAGTTGA--TTAAAACACAAAATTGAAAATACCTCAGCGTGCCGAG
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAATT-AAAATACCTCA-CGTGCCGAG
244359937 GCTC
63 GCTC
* *
244359941 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAAAAATTAAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAA
244359987 GGCTTAACTC
Statistics
Matches: 160, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
63 15 0.09
64 12 0.08
65 12 0.08
66 83 0.52
67 26 0.16
68 7 0.04
69 5 0.03
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (66 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAATACCTCACGTGCCGAGGCT
C
Found at i:244360076 original size:118 final size:119
Alignment explanation
Indices: 244359869--244360355 Score: 412
Period size: 118 Copynumber: 4.0 Consensus size: 119
244359859 CACGTGTCTG
** * * *
244359869 AGGCTCAACTCA-CTCTCGCAATATGAGTTGATTAAAACACAAAATTGAAAATACCTCAGCGTG-
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAA-ACAAAACTAAAAATACCTCAGCGTGC
244359932 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-AAAAATTAAA
65 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
*
244359986 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAACTAAAAATACCTCA-CGTGCC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAACTAAAAATACCTCAGCGTG-C
* *
244360050 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC-AAAATTAAAA
65 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAACAAAAATT-AAA
** * * * * * * * * * *
244360106 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT-ATGAGTTGATTAA-AACACAAAA
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGTCA--A-TTTA-AAACAAAAC-TAA
244360169 TTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA--TTGAAAAA
49 ----AAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAA
244360232 CAAAAATTAAA
109 CAAAAATTAAA
* *
244360243 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-----AAAACTAAAAATACCTCAGCGTGTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAACTAAAAATACCTCAGCGTGCC
* *
244360303 CGA-GCTCAACTCA-CTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAA
66 CGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
244360355 A
1 A
244360356 TACCTCAACG
Statistics
Matches: 299, Mismatches: 38, Indels: 71
0.73 0.09 0.17
Matches are distributed among these distances:
111 18 0.06
112 25 0.08
113 22 0.07
116 4 0.01
117 31 0.10
118 59 0.20
119 15 0.05
120 4 0.01
121 5 0.02
123 2 0.01
124 3 0.01
125 2 0.01
126 2 0.01
127 3 0.01
128 6 0.02
129 6 0.02
130 3 0.01
131 2 0.01
132 2 0.01
133 3 0.01
134 7 0.02
135 4 0.01
136 8 0.03
137 9 0.03
138 6 0.02
139 44 0.15
140 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (119 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAACTAAAAATACCTCAGCGTGCC
CGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:244360142 original size:71 final size:68
Alignment explanation
Indices: 244359986--244360243 Score: 315
Period size: 69 Copynumber: 3.8 Consensus size: 68
244359976 AAAAATTAAA
* * * *
244359986 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACAAAACTAAAAATACCTC-ACGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAAATTAAAAATACCTCAACGTG-
244360049 CCCG
65 CCCG
*
244360053 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT-AAAACAAAATTAAAAATACCTCAACGT
**
244360118 GTCTTG
64 G-CCCG
* * * *
244360124 AGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTAAAACACAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAA-ACAAAATTAAAAATACCTCAACGTG
244360188 CCCG
65 CCCG
* **
244360192 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAC-AAAATTAAAA
244360244 GGCTTAACTC
Statistics
Matches: 165, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
67 26 0.16
68 39 0.24
69 42 0.25
70 21 0.13
71 37 0.22
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (68 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAAATTAAAAATACCTCAACGTGC
CCG
Found at i:244360216 original size:68 final size:67
Alignment explanation
Indices: 244359986--244360243 Score: 320
Period size: 68 Copynumber: 3.7 Consensus size: 67
244359976 AAAAATTAAA
* ** * *
244359986 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAACTAAAAATACCTCACGTGCCC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAATTAAAAATACCTCACGTGCCC
244360051 CG
66 CG
* *
244360053 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTAAAAACAAAATTAAAAATACCTC-ACGT
* **
244360118 GTCTTG
62 GCCCCG
* *
244360124 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAATTGAAAATACCTCAGCGTG-
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAATTAAAAATACCTCA-CGTGC
244360188 CCCG
64 CCCG
*
244360192 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-AAAAAC-AAAATTAAAA
244360244 GGCTTAACTC
Statistics
Matches: 165, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
67 28 0.17
68 42 0.25
69 35 0.21
70 23 0.14
71 37 0.22
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (67 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAATTAAAAATACCTCACGTGCCC
CG
Found at i:244360248 original size:257 final size:252
Alignment explanation
Indices: 244359583--244360406 Score: 1315
Period size: 249 Copynumber: 3.3 Consensus size: 252
244359573 TTGAACAACG
* * * *
244359583 TTTGAAAACAAAATTGAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTTGAAAACAAAATT--AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
244359648 GTTGAATTTGAAAACA-AAAATTGAAAATACCTCAGCGTG-CGAGGCTCAACTCA-CTCTAGCAA
64 GTTG-A-TT-AAAACACAAAATTGAAAATACCTCAGCGTGCCGAGGCTCAACTCACCTCTAGCAA
244359710 TATGAGTTGATTTTGAAAAAAAAAAATTAAAA-GC-TAACTCACCTCTCGCAATATGAGT-AATT
126 TATGAGTTGA-TTTG-AAAAAAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
* *
244359772 TAAAACAAAA-TTAAAATACCTCAAGTGCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGAT
189 TAAAACAAAACTAAAAATACCTCACGTGCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGAT
244359835 TTTGAAAACAAAATTAAAATACCTC-ACGTGTC-TGAGGCTCAACTCA-CTCTCGCAATATGAGT
1 TTTGAAAACAAAATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGT
244359897 TGATTAAAACACAAAATTGAAAATACCTCAGCGTGCCGAGGCTCAACTCACCTCTAGCAATATGA
66 TGATTAAAACACAAAATTGAAAATACCTCAGCGTGCCGAGGCTCAACTCACCTCTAGCAATATGA
244359962 GTTGATTTTG-AAAAAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAAC
131 GTTGA-TTTGAAAAAAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAAC
244360026 AAAACTAAAAATACCTCACGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 AAAACTAAAAATACCTCACGTG-CCCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGA-T
244360087 TTTGAAAACAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTTGAAAACAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
244360152 TTGATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAATAT
65 TTGATTAAAACACAAAATTGAAAATACCTCAGCGTG-CCGAGGCTCAACTCACCTCTAGCAATAT
244360217 GAGTTGA-TTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT---
129 GAGTTGATTTGAAAAA-AAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA
*
244360278 --AAAACTAAAAATACCTCAGCGTGTCCGA-GCTCAACTCACTCTCGCAATATGAGTTGAT
193 ACAAAACTAAAAATACCTCA-CGTGCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGAT
244360336 TTTGAAAACAACAATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTTGAAAACAA-AATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
244360401 TTGATT
65 TTGATT
244360407 TCCTTGAAAG
Statistics
Matches: 548, Mismatches: 5, Indels: 41
0.92 0.01 0.07
Matches are distributed among these distances:
244 6 0.01
245 40 0.07
246 17 0.03
247 66 0.12
248 28 0.05
249 87 0.16
250 49 0.09
251 29 0.05
252 53 0.10
253 14 0.03
254 7 0.01
255 17 0.03
256 55 0.10
257 80 0.15
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.26
Consensus pattern (252 bp):
TTTGAAAACAAAATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGT
TGATTAAAACACAAAATTGAAAATACCTCAGCGTGCCGAGGCTCAACTCACCTCTAGCAATATGA
GTTGATTTGAAAAAAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACA
AAACTAAAAATACCTCACGTGCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGAT
Found at i:244360288 original size:51 final size:51
Alignment explanation
Indices: 244360192--244360289 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
244360182 AGCGTGCCCG
**
244360192 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTGAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTAGCAATATGAGTCAATTGAAAAACAAAAATTAAA
* * *
244360243 AGGCTTAACTCACCTCTCGCAATATGAGTCAATT-TAAAACTAAAAAT
1 AGGCTCAACTCACCTCTAGCAATATGAGTCAATTGAAAAAC-AAAAAT
244360290 ACCTCAGCGT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 5 0.12
51 36 0.88
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (51 bp):
AGGCTCAACTCACCTCTAGCAATATGAGTCAATTGAAAAACAAAAATTAAA
Found at i:244360322 original size:60 final size:66
Alignment explanation
Indices: 244360243--244360401 Score: 177
Period size: 67 Copynumber: 2.4 Consensus size: 66
244360233 AAAAATTAAA
* *
244360243 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-AA-AAC-TAAAAATACCTCAGCGTGTC-C
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCTC
244360304 G
66 G
* * *
244360305 A-GCTCAACTCA-CTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAAATACCTCAACGTG
1 AGGCTCAACTCACCTCTCGCAATATGAG-TCAATTT--AAACAAC-ATAAAAATACCTCAACGTG
*
244360368 TCTTG
62 TCTCG
*
244360373 AGGCTCAACTCATCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
244360402 TGATTTCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
60 15 0.19
61 14 0.17
62 1 0.01
64 2 0.02
65 3 0.04
67 18 0.22
68 2 0.02
69 11 0.14
70 15 0.19
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (66 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCTC
G
Found at i:244365354 original size:12 final size:12
Alignment explanation
Indices: 244365334--244365369 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
244365324 TGGGATATGC
*
244365334 AATGTATGAATG
1 AATGCATGAATG
244365346 AATGCATGAATG
1 AATGCATGAATG
244365358 AATGCATGAATG
1 AATGCATGAATG
244365370 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:244369122 original size:68 final size:68
Alignment explanation
Indices: 244368975--244369130 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
244368965 AGCCGATTTG
* * * * *
244368975 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
244369040 TATC
65 TATA
* *
244369044 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
244369106 ATATAGTA
62 ATATA-TA
244369114 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
244369131 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:244376652 original size:25 final size:26
Alignment explanation
Indices: 244376613--244376745 Score: 218
Period size: 25 Copynumber: 5.2 Consensus size: 26
244376603 TGATACAAAT
244376613 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
244376639 TGATAAT-GGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
244376663 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
244376689 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
244376714 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
244376740 TGATAA
1 TGATAA
244376746 GAATTCATGT
Statistics
Matches: 103, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
24 9 0.09
25 54 0.52
26 40 0.39
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:244376667 original size:50 final size:51
Alignment explanation
Indices: 244376613--244376745 Score: 241
Period size: 50 Copynumber: 2.6 Consensus size: 51
244376603 TGATACAAAT
244376613 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
244376663 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
* *
244376714 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
244376746 GAATTCATGT
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
50 46 0.57
51 34 0.43
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
Found at i:244378264 original size:25 final size:26
Alignment explanation
Indices: 244378223--244378274 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
244378213 TTTACAGTTT
244378223 TACCCCTAGGAGAAAATT-ACCGAAA
1 TACCCCTAGGAGAAAATTGACCGAAA
* *
244378248 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGAG-AAAATTGACCGAAA
244378274 T
1 T
244378275 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.23
Consensus pattern (26 bp):
TACCCCTAGGAGAAAATTGACCGAAA
Found at i:244382478 original size:25 final size:26
Alignment explanation
Indices: 244382416--244382499 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
244382406 TGATACAAAT
244382416 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
244382442 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
244382467 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
244382493 TGATAAT
1 TGATAAT
244382500 GGTAAATGGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
25 24 0.44
26 31 0.56
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:244385818 original size:80 final size:80
Alignment explanation
Indices: 244385734--244385882 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
244385724 TATGGTAACC
* * * *
244385734 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
244385798 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
244385814 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
244385879 CCGG
66 CCGG
244385883 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:244385824 original size:40 final size:38
Alignment explanation
Indices: 244385775--244385882 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
244385765 ATCACGATTT
*
244385775 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
244385815 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
244385855 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
244385883 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:244394810 original size:40 final size:40
Alignment explanation
Indices: 244394751--244394957 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
244394741 CAATTGAATG
* * * *
244394751 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
244394791 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
244394830 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
244394870 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
244394910 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
244394950 ATATCCGG
1 ATATCCGG
244394958 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 34 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:244394930 original size:80 final size:77
Alignment explanation
Indices: 244394752--244394957 Score: 241
Period size: 79 Copynumber: 2.6 Consensus size: 77
244394742 AATTGAATGA
* * ** * * *
244394752 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
*
244394817 TGTGCTAGTGAC
66 TGTGCAAGTGAC
* * *
244394829 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
244394894 ATTTGTGCAAGTCGTTC
64 A-TTGTGCAAGT-G-AC
* *
244394911 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
244394958 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 53 0.49
80 52 0.48
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (77 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TGTGCAAGTGAC
Found at i:244402885 original size:29 final size:29
Alignment explanation
Indices: 244402852--244402916 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
244402842 GTGACGAGAT
244402852 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
244402881 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
244402910 CGGCACT
1 TGGCACT
244402917 GGGTGTGCGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:244411204 original size:27 final size:28
Alignment explanation
Indices: 244411174--244411243 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
244411164 ATAATAAGTC
*
244411174 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
244411201 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
244411229 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
244411244 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:244419532 original size:46 final size:45
Alignment explanation
Indices: 244419482--244419653 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
244419472 TGGTTGAGCA
244419482 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
244419528 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
244419574 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
244419620 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
244419654 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:244419636 original size:92 final size:92
Alignment explanation
Indices: 244419479--244419648 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
244419469 GGATGGTTGA
* *
244419479 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
244419544 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
244419571 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
244419636 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
244419649 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:244436092 original size:41 final size:41
Alignment explanation
Indices: 244435972--244436107 Score: 123
Period size: 41 Copynumber: 3.2 Consensus size: 41
244435962 GGAATGTTAT
* * *
244435972 ATATGGTCTTAGATAGG-ATTTCATATTGATGCCAATAACCCAG
1 ATATGGTCTT--ATAGGAATATCATAATGATGCC-ATATCCCAG
* * * * *
244436015 CTATGGTCTTACACGAAAAATCAT-ATCAATGCCATATCCCAG
1 ATATGGTCTTATA-GGAATATCATAAT-GATGCCATATCCCAG
* *
244436057 ATATGGTCTTATAGGAATCTCATAATGATGCCATATCCCAA
1 ATATGGTCTTATAGGAATATCATAATGATGCCATATCCCAG
244436098 ATATGGTCTT
1 ATATGGTCTT
244436108 CCACATAGCC
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
41 32 0.43
42 23 0.31
43 19 0.26
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (41 bp):
ATATGGTCTTATAGGAATATCATAATGATGCCATATCCCAG
Found at i:244452918 original size:39 final size:39
Alignment explanation
Indices: 244452837--244452999 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
244452827 TATGGTAACC
* *
244452837 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
244452877 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
244452916 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
244452955 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
244452994 CGCACA
1 CGCACA
244453000 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:244468381 original size:47 final size:47
Alignment explanation
Indices: 244468272--244468382 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
244468262 CCGGGATAAG
*
244468272 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
244468319 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
244468366 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
244468383 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:244469135 original size:13 final size:13
Alignment explanation
Indices: 244469113--244469145 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
244469103 AAATTTCCCT
244469113 TTTCTATTTCTTTC
1 TTTCT-TTTCTTTC
244469127 TTTCTTTTCTTTC
1 TTTCTTTTCTTTC
244469140 TTTCTT
1 TTTCTT
244469146 CACGTTTGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCTTTTCTTTC
Found at i:244479963 original size:22 final size:22
Alignment explanation
Indices: 244479935--244479976 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
244479925 GTTAAAGTTT
244479935 CCCTGTTACACAGCTCGACTTC
1 CCCTGTTACACAGCTCGACTTC
244479957 CCCTGTTACACAGCTCGACT
1 CCCTGTTACACAGCTCGACT
244479977 GATCTGACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.40, G:0.14, T:0.26
Consensus pattern (22 bp):
CCCTGTTACACAGCTCGACTTC
Found at i:244480739 original size:70 final size:70
Alignment explanation
Indices: 244480618--244480777 Score: 297
Period size: 70 Copynumber: 2.3 Consensus size: 70
244480608 CCGATTGTCT
244480618 CGTA-CTCT-TGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
1 CGTAGCTCTCTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
244480681 TTTCA
66 TTTCA
244480686 CGTAGCTCTCTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
1 CGTAGCTCTCTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
244480751 TTTCA
66 TTTCA
244480756 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTC-TGTCTACATGG
244480778 GATACATCTC
Statistics
Matches: 89, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
68 4 0.04
69 4 0.04
70 70 0.79
71 11 0.12
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (70 bp):
CGTAGCTCTCTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:244483512 original size:40 final size:40
Alignment explanation
Indices: 244483445--244483703 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
244483435 TATTCGAATG
244483445 ATATCC-GGCTAAGTCCC-AAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
244483483 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
244483523 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
244483563 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
244483603 ATATCTGGGCTAAGTCCCG-AGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
244483642 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
244483682 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
244483704 TACTTGGTTT
Statistics
Matches: 206, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
38 6 0.03
39 60 0.29
40 138 0.67
41 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:244491083 original size:57 final size:57
Alignment explanation
Indices: 244491022--244491301 Score: 151
Period size: 48 Copynumber: 5.1 Consensus size: 57
244491012 GAATGTGAAA
244491022 ATATGTGTGATAATGTATATATGGTAAAGGCCGAATGTG-AATGTGAAAATATGTGTG
1 ATATGTGTGATAATGTATATATGGTAAAGGCCGAATG-GCAATGTGAAAATATGTGTG
* * * * ** *
244491079 ATATGTATATGTGGTAAAGTATATAT-GTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAA
1 ATATG----TGTGATAATGTATATATGGT-A-AAGGCCGAATGG-CAATGTGAAAATATGTG--T
*
244491142 C
57 G
*
244491143 ATATGTGTGAT-ATGTATATGTGGTAAA-GCCGAATGGCTAATGTG--AA-A----T-
1 ATATGTGTGATAATGTATATATGGTAAAGGCCGAATGGC-AATGTGAAAATATGTGTG
* *
244491191 ATATGTGTGAT-ATGTATATGTGGTAAA-GCCGAAGGGCTAATGTG-AAATA-----G
1 ATATGTGTGATAATGTATATATGGTAAAGGCCGAATGGC-AATGTGAAAATATGTGTG
*
244491241 --ATGTGTGAT-ATGTATATGTGGTAAA-GCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTGTGATAATGTATATATGGTAAAGGCCGAATGGC-AATGTGAAA-ATATGTGTG
244491296 ATATGT
1 ATATGT
244491302 ATGTGTGGTA
Statistics
Matches: 182, Mismatches: 17, Indels: 48
0.74 0.07 0.19
Matches are distributed among these distances:
48 84 0.46
49 4 0.02
50 4 0.02
55 3 0.02
56 1 0.01
57 22 0.12
58 2 0.01
59 9 0.05
60 9 0.05
61 17 0.09
62 15 0.08
63 7 0.04
64 5 0.03
ACGTcount: A:0.34, C:0.06, G:0.28, T:0.33
Consensus pattern (57 bp):
ATATGTGTGATAATGTATATATGGTAAAGGCCGAATGGCAATGTGAAAATATGTGTG
Found at i:244491187 original size:48 final size:48
Alignment explanation
Indices: 244491133--244491332 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
244491123 CGATGTGATG
*
244491133 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
244491181 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
244491229 AATGTGAAATAGATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
244491277 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
244491325 AATGTGAA
1 AATGTGAA
244491333 TGTTGTAACA
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 146 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:244491212 original size:121 final size:119
Alignment explanation
Indices: 244490979--244491218 Score: 405
Period size: 120 Copynumber: 2.0 Consensus size: 119
244490969 NNNNNGTGTA
244490979 TATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAATATGTGTGATAATGTATATAT
1 TATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAATATGTGTGATAATGTATATAT
244491044 GGTAAAGGCCGAATGTGAATGTGAAAATATGTGTGATATGTATATGTGGTAAAG
66 GGTAAAGGCCGAATGTGAATGTGAAAATATGTGTGATATGTATATGTGGTAAAG
244491098 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGAT-ATGTATAT
1 TATATATGTGATAAGGCCTAATGGCC-ATGTGATGAATGTGAAA-ATATGTGTGATAATGTATAT
*
244491162 GTGGTAAA-GCCGAATG-GCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAG
64 ATGGTAAAGGCCGAATGTG--AATGTGAAA-ATATGTGTGATATGTATATGTGGTAAAG
244491219 CCGAAGGGCT
Statistics
Matches: 115, Mismatches: 1, Indels: 8
0.93 0.01 0.06
Matches are distributed among these distances:
118 1 0.01
119 34 0.30
120 41 0.36
121 39 0.34
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (119 bp):
TATATATGTGATAAGGCCTAATGGCCATGTGATGAATGTGAAAATATGTGTGATAATGTATATAT
GGTAAAGGCCGAATGTGAATGTGAAAATATGTGTGATATGTATATGTGGTAAAG
Found at i:244491424 original size:36 final size:37
Alignment explanation
Indices: 244491371--244491460 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
244491361 AACTTGGAAA
*
244491371 TATGTTCCGGGTGAGACCCGATGACTA-GTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
244491408 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
244491445 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
244491461 TTCGTAATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
36 21 0.41
37 30 0.59
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:244493402 original size:40 final size:39
Alignment explanation
Indices: 244493356--244493609 Score: 214
Period size: 40 Copynumber: 6.5 Consensus size: 39
244493346 TGAATGATAC
**
244493356 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG-ATATAT
* * * *
244493396 CCGGGCTAAGACCCGAA-GCATTTGTG-TGAGTTGTTTATAC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCT-AG-TG-ATATAT
* * * *
244493436 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCTAGT-GATATAT
* * *
244493476 CC-GGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGATATAT
* * *
244493515 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAG-GCATTCGTGCTAGTGATATAT
* * *
244493555 CC-GACTAAGTTCCGAA-GCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGATATAT
*
244493592 CCGGGCTAGGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
244493610 AGCAATCATG
Statistics
Matches: 183, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
37 23 0.13
38 12 0.07
39 45 0.25
40 92 0.50
41 7 0.04
42 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTGATATAT
Found at i:244497515 original size:44 final size:45
Alignment explanation
Indices: 244497319--244497588 Score: 306
Period size: 44 Copynumber: 6.0 Consensus size: 45
244497309 TGTATGAGAT
*
244497319 GTATATATGTGATACGGCCTAATGGCAATGTGATGAATGTGAAAGTGTA
1 GTATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTG-AA--G-A
* *
244497368 TATATATATGTGATAAGGCCTAATGGCCAATGTGA--AATGTGAAAGT
1 -GTATATATGTGATAAGGCCTAATGG-CAATGTGATGAATGTG-AAGA
*
244497414 GTATATATATGTGAT-AGG-CTAATGGCCAATGTGATGAATGTGAAAGT
1 G--TATATATGTGATAAGGCCTAATGG-CAATGTGATGAATGTG-AAGA
*
244497461 GTATACATGTGATAAGGCCTAATGGCAATGTGATGAATGTG-AGA
1 GTATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAAGA
* *
244497505 GTATATATGTGATAAGGCCTAATGG-GATGTGATGAATGTGAAGT
1 GTATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAAGA
*
244497549 GTATATATGTGATAAGG-CT-A-GGCGATGTGATGAATGTGAA
1 GTATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAA
244497589 TATATGTGTG
Statistics
Matches: 202, Mismatches: 9, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
41 2 0.01
42 18 0.09
43 16 0.08
44 45 0.22
45 27 0.13
46 22 0.11
47 32 0.16
49 9 0.04
50 23 0.11
51 8 0.04
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (45 bp):
GTATATATGTGATAAGGCCTAATGGCAATGTGATGAATGTGAAGA
Found at i:244497698 original size:112 final size:113
Alignment explanation
Indices: 244497550--244497774 Score: 386
Period size: 112 Copynumber: 2.0 Consensus size: 113
244497540 ATGTGAAGTG
*
244497550 TATATATGTGATAAGGCTAGGCGATGTGATGAATGTGAATATATGTGTGATATGTATATGTGGTA
1 TATATATGTGATAAGGCTAGGCGATGTGATGAATGTGAACATATGTGTGATATGTATATGTGGTA
244497615 AAGCCGAATGGTAATGTGAA-ATATGTGTG-TATGTATATGTGGTAAGC
66 AAGCCG-ATGGTAATGTGAATATATGTGTGATATGTATATGTGGTAAGC
244497662 TATATATGTGATAAGG-TAATGGCGATGTGATG-ATGTGAACATATGTGTGATATGTATATGTGG
1 TATATATGTGATAAGGCT-A-GGCGATGTGATGAATGTGAACATATGTGTGATATGTATATGTGG
244497725 TAAAGCCGATGGTAATGTGAATATATGTGTGATATGTATATGTGGTAAGC
64 TAAAGCCGATGGTAATGTGAATATATGTGTGATATGTATATGTGGTAAGC
244497775 GAGGGTAATG
Statistics
Matches: 108, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
111 14 0.13
112 64 0.59
113 30 0.28
ACGTcount: A:0.31, C:0.04, G:0.29, T:0.35
Consensus pattern (113 bp):
TATATATGTGATAAGGCTAGGCGATGTGATGAATGTGAACATATGTGTGATATGTATATGTGGTA
AAGCCGATGGTAATGTGAATATATGTGTGATATGTATATGTGGTAAGC
Found at i:244497740 original size:59 final size:59
Alignment explanation
Indices: 244497569--244497741 Score: 148
Period size: 57 Copynumber: 3.0 Consensus size: 59
244497559 GATAAGGCTA
244497569 GGCGATGTGATGAATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGTAAT
1 GGCGATGTGATG-ATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCG-ATGGTAAT
* ** * * * * * * *
244497630 -GTGAAAT-ATG-TGTGTATGTATATGTGGTAAGCTATATAT-GTGATA----A-GGTAAT
1 GGCGATGTGATGATGTGAATATATGTGTGATATG-TATATGTGGT-AAAGCCGATGGTAAT
*
244497682 GGCGATGTGATGATGTGAACATATGTGTGATATGTATATGTGGTAAAGCCGATGGTAAT
1 GGCGATGTGATGATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGATGGTAAT
244497741 G
1 G
244497742 TGAATATATG
Statistics
Matches: 80, Mismatches: 21, Indels: 24
0.64 0.17 0.19
Matches are distributed among these distances:
52 6 0.08
53 5 0.06
54 11 0.14
55 17 0.21
57 18 0.22
58 9 0.11
59 10 0.12
60 4 0.05
ACGTcount: A:0.31, C:0.05, G:0.31, T:0.34
Consensus pattern (59 bp):
GGCGATGTGATGATGTGAATATATGTGTGATATGTATATGTGGTAAAGCCGATGGTAAT
Found at i:244497751 original size:45 final size:46
Alignment explanation
Indices: 244497694--244497881 Score: 264
Period size: 45 Copynumber: 4.2 Consensus size: 46
244497684 CGATGTGATG
*
244497694 ATGTGAACATATGTGTGATATGTATATGTGGTAAAGCCG-ATGG-TA
1 ATGTGAATATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCTA
*
244497739 ATGTGAATATATGTGTGATATGTATATGTGGTAAG-CG-A-GGGTA
1 ATGTGAATATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTA
244497782 ATGTGGAATATATGTGTGATATGTATATGTGGTAAGCCGAATGGCT-
1 ATGT-GAATATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTA
* *
244497828 ATGTGAATATATGTGTGATACGTATGT-TGGTAAAGCCGAATGGCTA
1 ATGTGAATATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCTA
244497874 ATGTGAAT
1 ATGTGAAT
244497882 GTTGTANNNN
Statistics
Matches: 132, Mismatches: 4, Indels: 13
0.89 0.03 0.09
Matches are distributed among these distances:
42 2 0.02
43 9 0.07
44 38 0.29
45 67 0.51
46 13 0.10
47 3 0.02
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.34
Consensus pattern (46 bp):
ATGTGAATATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTA
Found at i:244497802 original size:89 final size:87
Alignment explanation
Indices: 244497694--244497860 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 87
244497684 CGATGTGATG
244497694 ATGTGAACATATGTGTGATATGTATATGTGGTAAAGCCG-ATGG-TAATGTGAATATATGTGTGA
1 ATGTGAACATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCT-ATGTGAATATATGTGTGA
*
244497757 TATGTATATGTGGTAAGCGAGGGTA
64 TACGTATAT-TGGTAAGCGAGGGTA
*
244497782 ATGTGGAATATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTATGTGAATATATGTGTGAT
1 ATGT-GAACATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTATGTGAATATATGTGTGAT
*
244497847 ACGTATGTTGGTAA
65 ACGTATATTGGTAA
244497861 AGCCGAATGG
Statistics
Matches: 73, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
88 16 0.22
89 56 0.77
90 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (87 bp):
ATGTGAACATATGTGTGATATGTATATGTGGTAAGCCGAATGGCTATGTGAATATATGTGTGATA
CGTATATTGGTAAGCGAGGGTA
Found at i:244504309 original size:41 final size:41
Alignment explanation
Indices: 244504228--244504367 Score: 162
Period size: 41 Copynumber: 3.5 Consensus size: 41
244504218 CCCAAGGCCA
* * * *
244504228 TCGGGTCTTA-CCCGGATATGGTCAC-TAGCATAAATGCCT
1 TCGGGACTTAGCCCGGATATAGTCACTTAGCACAAATACCT
*
244504267 TCGGGACTTAGCCCGGATATAGTTACTTAGCACAAATACCT
1 TCGGGACTTAGCCCGGATATAGTCACTTAGCACAAATACCT
* * *
244504308 TC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAA-AGCT
1 TCGGGA-CTTAGCCCGGATATAGTCACTTAGCACAAATACCT
*
244504348 TCGGGACTTAGCCCGTATAT
1 TCGGGACTTAGCCCGGATAT
244504368 CATTCGAGTA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
39 9 0.11
40 32 0.38
41 44 0.52
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (41 bp):
TCGGGACTTAGCCCGGATATAGTCACTTAGCACAAATACCT
Found at i:244508356 original size:27 final size:29
Alignment explanation
Indices: 244508296--244508371 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 29
244508286 GTGACGAGAT
* *
244508296 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
*
244508325 TGGCACTAAGTGTGC-AGCT-GAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
244508352 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
244508372 CGGAGGGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 19 0.47
28 7 0.17
29 14 0.35
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:244520045 original size:40 final size:40
Alignment explanation
Indices: 244519918--244520047 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
244519908 ATGCTGGAAA
* * *
244519918 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
244519958 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
244519998 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
244520038 TTATATCCGG
1 TTATATCCGG
244520048 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:244524231 original size:40 final size:40
Alignment explanation
Indices: 244524176--244524352 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
244524166 TGGATGATAA
* * *
244524176 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
244524216 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
244524256 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
244524296 CCGGGCTATGT--CGAAGGCATTCGAGCGAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTA-CTATAT
* *
244524335 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
244524353 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
38 21 0.17
39 11 0.09
40 91 0.74
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:244530340 original size:39 final size:40
Alignment explanation
Indices: 244530285--244530433 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
244530275 NNNNNNNNNN
*
244530285 GAATATA-CCCGGCTAAGTCCCGAA-GCATTTATGCTAGT
1 GAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGT
*
244530323 GAATATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGT
1 GAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGT
* * ** *
244530363 GATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT
1 GAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-T
*
244530404 G--TCATAT-CGGGCTAAGACCCGAAGGCATTT
1 GAAT-ATATCCGGGCTAAGTCCCGAAGGCATTT
244530434 GTGCAAGATA
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
38 7 0.07
39 38 0.39
40 51 0.52
41 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
GAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGT
Found at i:244530476 original size:40 final size:40
Alignment explanation
Indices: 244530369--244530476 Score: 130
Period size: 39 Copynumber: 2.7 Consensus size: 40
244530359 TAGTGATTAT
* * ** *
244530369 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTCAT
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGATACCAA
*
244530409 AT-CGGGCTAAGACCCGAAGGCATTTGTGCAAGATACCAA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGATACCAA
*
244530448 ATCCGGGTTAAGACCCGAAGGCAATTGTG
1 ATCCGGGCTAAGACCCGAAGGCAATTGTG
244530477 TTGTGGTTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 30 0.52
40 28 0.48
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGATACCAA
Found at i:244533202 original size:51 final size:51
Alignment explanation
Indices: 244533121--244533220 Score: 146
Period size: 51 Copynumber: 2.0 Consensus size: 51
244533111 TGGATGAGAG
* *
244533121 CATCGGAGCTCGTTGAGTGGTCTAAGTTCATAATGGATGCGATACATGTAA
1 CATCCGAGCTCGTTGAGAGGTCTAAGTTCATAATGGATGCGATACATGTAA
* * * *
244533172 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTCTAAGTTCATAATGGATGCGATACATGT
244533221 TATAAGGTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCTAAGTTCATAATGGATGCGATACATGTAA
Found at i:244533468 original size:6 final size:6
Alignment explanation
Indices: 244533457--244533494 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
244533447 AGGTATATTC
*
244533457 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGAAT AT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT AT
244533495 TTGATTAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (6 bp):
ATGTAT
Found at i:244536651 original size:40 final size:40
Alignment explanation
Indices: 244536592--244536799 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
244536582 CAATTGAATG
* * * *
244536592 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
244536632 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
244536672 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
244536712 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
244536752 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
244536792 ATATCCGG
1 ATATCCGG
244536800 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:244536730 original size:80 final size:80
Alignment explanation
Indices: 244536593--244536799 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
244536583 AATTGAATGA
* * ** * * *
244536593 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
244536658 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
244536671 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
244536736 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
244536753 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
244536800 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:244541620 original size:46 final size:46
Alignment explanation
Indices: 244541567--244541742 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
244541557 TATTTGGGCA
244541567 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
244541613 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
244541660 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
244541706 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
244541743 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:244541722 original size:93 final size:93
Alignment explanation
Indices: 244541563--244541734 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
244541553 GGGATATTTG
* *
244541563 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
244541628 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
244541656 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
244541721 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
244541735 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:244542777 original size:22 final size:23
Alignment explanation
Indices: 244542752--244542798 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
244542742 GGTCAGGTAG
244542752 TTGAACCCTG-AACAGGGGAGAC
1 TTGAACCCTGAAACAGGGGAGAC
244542774 TTGAACCCTGAAACAGGGGAGAC
1 TTGAACCCTGAAACAGGGGAGAC
244542797 TT
1 TT
244542799 TAACTAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.32, C:0.21, G:0.30, T:0.17
Consensus pattern (23 bp):
TTGAACCCTGAAACAGGGGAGAC
Found at i:244544643 original size:15 final size:15
Alignment explanation
Indices: 244544623--244544688 Score: 75
Period size: 15 Copynumber: 4.5 Consensus size: 15
244544613 CTTATCTGTC
244544623 TCTTTATTCTGGATT
1 TCTTTATTCTGGATT
*
244544638 TCTTTATTCTGGGTT
1 TCTTTATTCTGGATT
*
244544653 TCTCTA-TCTTGGATT
1 TCTTTATTC-TGGATT
244544668 TCTTTATTC-GG-TT
1 TCTTTATTCTGGATT
244544681 TCTGTTAT
1 TCT-TTAT
244544689 CTTTGTTCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
13 5 0.11
14 8 0.18
15 29 0.66
16 2 0.05
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (15 bp):
TCTTTATTCTGGATT
Found at i:244547242 original size:29 final size:29
Alignment explanation
Indices: 244547209--244547282 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
244547199 CCTTCGAGCT
244547209 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
244547238 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
244547267 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
244547283 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:244547243 original size:58 final size:58
Alignment explanation
Indices: 244547150--244547282 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
244547140 ATACTCGATT
* * * * *
244547150 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
244547208 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
244547266 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
244547283 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:244554826 original size:39 final size:40
Alignment explanation
Indices: 244554770--244554867 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
244554760 GGATATAGCG
* * *
244554770 ACTCGCTCAAA-GCCTTCGGGACATAGCCCGG-TATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATATAAGA
* * * **
244554808 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATATAAGA
244554848 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
244554868 ATCTTAGTCC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 9 0.18
39 18 0.37
40 22 0.45
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATATAAGA
Found at i:244554864 original size:40 final size:39
Alignment explanation
Indices: 244554770--244554919 Score: 128
Period size: 39 Copynumber: 3.8 Consensus size: 39
244554760 GGATATAGCG
* * ***
244554770 ACTCGCTCAAA-GCCTTCGGGACATAGCCCGG-TATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT-TGGGA
* *
244554808 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TTGGGA
* **
244554848 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTGGGA
* *
244554887 ACTTAGCACAAA-GCCTTCGGAACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
244554920 CATCATTCGA
Statistics
Matches: 91, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
38 9 0.10
39 43 0.47
40 38 0.42
41 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTGGGA
Found at i:244554913 original size:39 final size:40
Alignment explanation
Indices: 244554812--244554919 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 40
244554802 ATAATAGCTC
* * *
244554812 GCACAAATGCCTTCGGGACTTAACCCGGATTTGGGAACTC
1 GCACAAATGCCTTCGGAACTTAGCCCGGATTTGGGAACTA
* * **
244554852 GCACAAATGCCTTCGGATCTTAGTCCGGA-TTGGTCACTTA
1 GCACAAATGCCTTCGGAACTTAGCCCGGATTTGGGAAC-TA
244554892 GCACAAA-GCCTTCGGAACTTAGCCCGGA
1 GCACAAATGCCTTCGGAACTTAGCCCGGA
244554920 CATCATTCGA
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGAACTTAGCCCGGATTTGGGAACTA
Found at i:244562282 original size:38 final size:38
Alignment explanation
Indices: 244562239--244562315 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
244562229 ATGCAAATTC
244562239 TCCATCCTGTAACCGTTCTAGTCGGTATCAACTCGTTA
1 TCCATCCTGTAACCGTTCTAGTCGGTATCAACTCGTTA
*
244562277 TCCATCCTGTAACTGTTCTAGTCGGTATCAACTCGTTA
1 TCCATCCTGTAACCGTTCTAGTCGGTATCAACTCGTTA
244562315 T
1 T
244562316 TCTCATTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (38 bp):
TCCATCCTGTAACCGTTCTAGTCGGTATCAACTCGTTA
Found at i:244572104 original size:29 final size:29
Alignment explanation
Indices: 244572069--244572143 Score: 107
Period size: 29 Copynumber: 2.6 Consensus size: 29
244572059 GGTTGAGAGA
* *
244572069 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
244572098 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
244572127 ATGGCACTAAGTGTGCG
1 ATGGCACTAAGTGTGCG
244572144 TGGTTGATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 5 0.12
29 37 0.88
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:244589026 original size:40 final size:40
Alignment explanation
Indices: 244588924--244589074 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 40
244588914 AAATTGAATG
* * * * * *
244588924 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
244588964 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
244589004 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
*
244589044 A-ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
244589075 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
39 29 0.31
40 65 0.69
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:244596502 original size:29 final size:29
Alignment explanation
Indices: 244596469--244596626 Score: 151
Period size: 29 Copynumber: 5.5 Consensus size: 29
244596459 GTGACGAGAT
*
244596469 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
244596498 TGGCACTAAGTGTGCGTGCTGGAAATAT-
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
244596526 TGGCACTAAGTGT--GTGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
244596553 TGAACACTATGTGTGCAAGCTGGAAAAATA
1 TG-GCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
244596583 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
244596612 TGGCACTATGTGTGC
1 TGGCACTAAGTGTGC
244596627 AGGGCTTAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 12 0.11
27 2 0.02
28 22 0.20
29 59 0.55
30 13 0.12
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Done.