Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 77 of 770
Found at i:22719063 original size:57 final size:56
Alignment explanation
Indices: 22718991--22719108 Score: 218
Period size: 57 Copynumber: 2.1 Consensus size: 56
22718981 AAATTGATAA
22718991 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAA-GTTTCATGATAATAGGT
*
22719048 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATGGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATAGGT
22719104 TAGGT
1 TAGGT
22719109 AAATGTTTCA
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 21 0.35
57 39 0.65
ACGTcount: A:0.31, C:0.05, G:0.28, T:0.36
Consensus pattern (56 bp):
TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAAGTTTCATGATAATAGGT
Found at i:22721150 original size:135 final size:137
Alignment explanation
Indices: 22720907--22721191 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
22720897 GAGTAGTCTC
22720907 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
22720972 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22721036 ACTGTTA
131 ACTGTTA
*
22721043 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
22721107 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22721172 ACTGTTA
131 ACTGTTA
**
22721179 CCTGAATGGGCTT
1 CCCAAATGGGCTT
22721192 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 95 0.66
136 49 0.34
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:22724900 original size:26 final size:26
Alignment explanation
Indices: 22724863--22725003 Score: 210
Period size: 26 Copynumber: 5.2 Consensus size: 26
22724853 TGATACAAAT
* *
22724863 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22724889 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
22724915 TGATAATAGGTTAGGTTAGGTAAATGTTCCA
1 TGATAAT--G---GGTTAGGTAAATGTTTCA
22724946 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22724972 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
22724998 TGATAA
1 TGATAA
22725004 GAATATCATG
Statistics
Matches: 106, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
26 80 0.75
28 1 0.01
29 1 0.01
31 24 0.23
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:22724941 original size:57 final size:57
Alignment explanation
Indices: 22724869--22724987 Score: 229
Period size: 57 Copynumber: 2.1 Consensus size: 57
22724859 AAATTGATAA
22724869 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
*
22724926 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGT
1 TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
22724983 TAGGT
1 TAGGT
22724988 AAATGTTTCA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.37
Consensus pattern (57 bp):
TAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGT
Found at i:22727032 original size:136 final size:137
Alignment explanation
Indices: 22726787--22727072 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
22726777 GAGTAGTCTC
22726787 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
22726852 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22726917 ACTGTTA
131 ACTGTTA
*
22726924 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
22726988 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
22727053 ACTGTTA
131 ACTGTTA
**
22727060 CCTGAATGGGCTT
1 CCCAAATGGGCTT
22727073 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 124 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:22730012 original size:159 final size:160
Alignment explanation
Indices: 22729766--22730084 Score: 613
Period size: 159 Copynumber: 2.0 Consensus size: 160
22729756 TAGCATTTTT
* *
22729766 AGAGAGAGGGAGAGAGAAATAGCTATAACACGGATGGCAAAATTGAATAAACAAGCATTTTTTTA
1 AGAGAGAGAGAGAGAGAAATAGCTATAACACGGATGGCAAAATTGAATAAACAAGCATTTTTTAA
22729831 AAAAAATTAATCAGAGCCGTAGAGATCTGCTGAAAGCTTTCCAAGACATGGGATTTTGGGGGTCA
66 AAAAAATTAATCAGAGCCGTAGAGATCTGCTGAAAGCTTTCCAAGACATGGGATTTTGGGGGTCA
22729896 GCCACAGGCTTCTTCCCAGCATTACCTTTC
131 GCCACAGGCTTCTTCCCAGCATTACCTTTC
22729926 AGAGAGAGAGAGAGAGAAATAGCTATAACACGGAT-GCAAAATTGAATAAACAAGCATTTTTTAA
1 AGAGAGAGAGAGAGAGAAATAGCTATAACACGGATGGCAAAATTGAATAAACAAGCATTTTTTAA
22729990 AAAAAATTAATCAGAGCCGTAGAGATCTGCTGAAAGCTTTCCAAGACATGGGATTTTGGGGGTCA
66 AAAAAATTAATCAGAGCCGTAGAGATCTGCTGAAAGCTTTCCAAGACATGGGATTTTGGGGGTCA
22730055 GCCACAGGCTTCTTCCCAGCATTACCTTTC
131 GCCACAGGCTTCTTCCCAGCATTACCTTTC
22730085 CTACCAAGGA
Statistics
Matches: 157, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
159 123 0.78
160 34 0.22
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (160 bp):
AGAGAGAGAGAGAGAGAAATAGCTATAACACGGATGGCAAAATTGAATAAACAAGCATTTTTTAA
AAAAAATTAATCAGAGCCGTAGAGATCTGCTGAAAGCTTTCCAAGACATGGGATTTTGGGGGTCA
GCCACAGGCTTCTTCCCAGCATTACCTTTC
Found at i:22732798 original size:26 final size:26
Alignment explanation
Indices: 22732764--22732820 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
22732754 AATAAACTCG
*
22732764 TTTGTCTAATAAAATTAAACGATTAT
1 TTTGACTAATAAAATTAAACGATTAT
22732790 TTTGACTAATAAAATTAAACGATTAT
1 TTTGACTAATAAAATTAAACGATTAT
22732816 TTTGA
1 TTTGA
22732821 TATAGTTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (26 bp):
TTTGACTAATAAAATTAAACGATTAT
Found at i:22733500 original size:30 final size:27
Alignment explanation
Indices: 22733445--22733503 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
22733435 AGAAAAATTA
*
22733445 TTAAATTTTAATAAAAATATAAAAAAT
1 TTAAATTTTAATAAAAAAATAAAAAAT
*
22733472 TTAAATTTTTTATAAAAAAATCATAAAAAT
1 TTAAA-TTTTAATAAAAAAAT-A-AAAAAT
22733502 TT
1 TT
22733504 GAAAAAATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 5 0.19
28 13 0.48
29 1 0.04
30 8 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (27 bp):
TTAAATTTTAATAAAAAAATAAAAAAT
Found at i:22733516 original size:18 final size:20
Alignment explanation
Indices: 22733487--22733537 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 20
22733477 TTTTTTATAA
*
22733487 AAAAATCATAAAAATTTGA-
1 AAAAATGATAAAAATTTGAT
*
22733506 AAAAATG-T-AAAATTTTAT
1 AAAAATGATAAAAATTTGAT
22733524 AAAAATGATAAAAA
1 AAAAATGATAAAAA
22733538 ATTAACTACC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 8 0.30
18 8 0.30
19 7 0.26
20 4 0.15
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAAATGATAAAAATTTGAT
Found at i:22733793 original size:19 final size:19
Alignment explanation
Indices: 22733771--22733831 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
22733761 TTTCTATATA
*
22733771 TTTTATAATTTTTTACGAT
1 TTTTATAATTTTTTACAAT
***
22733790 TTTTATAAAAATTTACAAT
1 TTTTATAATTTTTTACAAT
22733809 TTTTAT-ATTTTTT-CTAAT
1 TTTTATAATTTTTTAC-AAT
22733827 TTTTA
1 TTTTA
22733832 ATAAAAGCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
17 1 0.03
18 12 0.35
19 21 0.62
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTTATAATTTTTTACAAT
Found at i:22733797 original size:56 final size:57
Alignment explanation
Indices: 22733697--22733818 Score: 142
Period size: 55 Copynumber: 2.2 Consensus size: 57
22733687 TTTTACGAAA
* * * *
22733697 TTTATATTTCTTTACATTTTGTATAATTTTCTTATGACTTTATAAAAAAATTATATTT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTAT-AAAAAATTACAATT
* * *
22733755 TTTATATTTCTATATA-TTT-TATAATTTT-TTACGATTTTTATAAAAATTTACAATT
1 TTTATATTTCTATACATTTTGTATAATTTTCTTACGA-CTTTATAAAAAATTACAATT
22733810 TTTATATTT
1 TTTATATTT
22733819 TTTCTAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
55 25 0.45
56 14 0.25
57 3 0.05
58 14 0.25
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (57 bp):
TTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAAAATTACAATT
Found at i:22733831 original size:56 final size:57
Alignment explanation
Indices: 22733697--22733831 Score: 129
Period size: 56 Copynumber: 2.4 Consensus size: 57
22733687 TTTTACGAAA
* * *
22733697 TTTATATTTCTT-TACATTTTGTATAATTTTCTTATGACTTTATAAAAAAATTATATT
1 TTTATATTTTTTCTACATTTT-TATAATTTTCTTACGACTTTATAAAAAAATTAAATT
* * * *
22733754 TTT-TA-TATTTCTATATATTTTATAATTTT-TTACGA-TTTTTATAAAAATTTACAATT
1 TTTATATTTTTTCTACAT-TTTTATAATTTTCTTACGACTTTATA-AAAAAATTA-AATT
22733810 TTTATATTTTTTCTA-ATTTTTA
1 TTTATATTTTTTCTACATTTTTA
22733832 ATAAAAGCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
54 5 0.08
55 16 0.25
56 26 0.41
57 10 0.16
58 7 0.11
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (57 bp):
TTTATATTTTTTCTACATTTTTATAATTTTCTTACGACTTTATAAAAAAATTAAATT
Found at i:22733964 original size:85 final size:86
Alignment explanation
Indices: 22733840--22734012 Score: 224
Period size: 85 Copynumber: 2.0 Consensus size: 86
22733830 TAATAAAAGC
* * *
22733840 AAGGACTTAATTGTTTTATTTGAAAATGTTTGAGGGTCTTTTTGATGCAGTTTGAAAA-TTCAAG
1 AAGGACTTAATTGTTTTATTTGAAAAGGTTTGAAGGTCTTTTTGATGCA-TTTGAAAAGTTCAAA
* * *
22733904 TATCCAATTGAGTGGAAAAAAA
65 TACCCAAATGAGTGAAAAAAAA
* * * * *
22733926 AAGGGCTTAATTGTTTT-TTTTAAAAGGTTTGAAGGTCTTTTTGATGTATTTTAAAAGTTTAAAT
1 AAGGACTTAATTGTTTTATTTGAAAAGGTTTGAAGGTCTTTTTGATGCATTTGAAAAGTTCAAAT
22733990 ACCCAAATGAGTGAAAAAAAA
66 ACCCAAATGAGTGAAAAAAAA
22734011 AA
1 AA
22734013 CAAGGAATTA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
84 7 0.09
85 52 0.69
86 16 0.21
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (86 bp):
AAGGACTTAATTGTTTTATTTGAAAAGGTTTGAAGGTCTTTTTGATGCATTTGAAAAGTTCAAAT
ACCCAAATGAGTGAAAAAAAA
Found at i:22737746 original size:23 final size:23
Alignment explanation
Indices: 22737720--22737763 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
22737710 TCTAGAATTT
22737720 TCTCTTCAGAGAATTTTCTCTAA
1 TCTCTTCAGAGAATTTTCTCTAA
22737743 TCTCTTCAGAGAATTTTCTCT
1 TCTCTTCAGAGAATTTTCTCT
22737764 CTACAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (23 bp):
TCTCTTCAGAGAATTTTCTCTAA
Found at i:22737897 original size:24 final size:24
Alignment explanation
Indices: 22737868--22737941 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
22737858 TAATCACTTT
22737868 AATATTAAATTAATATAATATTTA
1 AATATTAAATTAATATAATATTTA
* *
22737892 AATATTAGATTAATTTAATA-TTA
1 AATATTAAATTAATATAATATTTA
* *
22737915 AATCTTATTAAAATAATAGAATATTTA
1 AA---TATTAAATTAATATAATATTTA
22737942 TCTACAAGAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 5 0.12
24 18 0.45
26 14 0.35
27 3 0.08
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (24 bp):
AATATTAAATTAATATAATATTTA
Found at i:22738003 original size:20 final size:18
Alignment explanation
Indices: 22737956--22738004 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
22737946 CAAGATAAAC
22737956 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
22737973 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
22737993 ATTAAATTAATA
1 ATTAAATTAATA
22738005 AAATACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:22739640 original size:16 final size:16
Alignment explanation
Indices: 22739619--22739649 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22739609 CTATGCATGC
*
22739619 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
22739635 AAAATACAAAAGACA
1 AAAATACAAAAGACA
22739650 TAATAATGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:22742344 original size:29 final size:29
Alignment explanation
Indices: 22742282--22742389 Score: 112
Period size: 29 Copynumber: 3.8 Consensus size: 29
22742272 TTCACATAAC
* * * *
22742282 TGTATCTGGCCCATTAAGCCC-AATCATA
1 TGTATATGACCCATTAGGCCCAAATCACA
* * *
22742310 TTTATATGACCCATTAGGCCTAAATCACC
1 TGTATATGACCCATTAGGCCCAAATCACA
*
22742339 TGTATATGGCCCATTAGGCCCAAATCACA
1 TGTATATGACCCATTAGGCCCAAATCACA
*
22742368 TTTATAT-AGCCCATTAGGCCCA
1 TGTATATGA-CCCATTAGGCCCA
22742390 GTCACATTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
28 16 0.25
29 49 0.75
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
TGTATATGACCCATTAGGCCCAAATCACA
Found at i:22742637 original size:16 final size:16
Alignment explanation
Indices: 22742618--22742654 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
22742608 AAACTTTCAG
22742618 CTTTTCGACATTTCGA
1 CTTTTCGACATTTCGA
* *
22742634 CTTTTCGGCATTTCGG
1 CTTTTCGACATTTCGA
22742650 CTTTT
1 CTTTT
22742655 ACCGATACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (16 bp):
CTTTTCGACATTTCGA
Found at i:22743937 original size:16 final size:17
Alignment explanation
Indices: 22743905--22743939 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
22743895 ATAAAAAAAG
*
22743905 TTTGGGATTTCGGGATT
1 TTTGGGATTTCGAGATT
22743922 TTTGGG-TTTCGAGATT
1 TTTGGGATTTCGAGATT
22743938 TT
1 TT
22743940 CGGGGCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.11, C:0.06, G:0.31, T:0.51
Consensus pattern (17 bp):
TTTGGGATTTCGAGATT
Found at i:22746232 original size:40 final size:40
Alignment explanation
Indices: 22746173--22746314 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 40
22746163 TATTCGGATG
*
22746173 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* * *
22746213 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
22746253 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAGT-AGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CT
* * *
22746293 ATATCC-AGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
22746315 TACTTGGTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
39 15 0.17
40 71 0.82
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:22754104 original size:40 final size:40
Alignment explanation
Indices: 22754049--22754304 Score: 383
Period size: 40 Copynumber: 6.4 Consensus size: 40
22754039 GATGATAACT
* *
22754049 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* *
22754089 GGGCTAAGCCCCGAAGGCATTTGTACGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
22754129 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
22754169 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* ** *
22754209 GGGCTAAGTCCCGAAGGTATTTGTGATAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
22754249 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
*
22754289 -GGCTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
22754305 TACTTGGTTT
Statistics
Matches: 198, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 17 0.09
40 180 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:22756148 original size:29 final size:29
Alignment explanation
Indices: 22756106--22756187 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
22756096 CGTATTTTTT
22756106 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
22756135 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
22756164 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
22756188 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:22764041 original size:29 final size:29
Alignment explanation
Indices: 22763999--22764080 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
22763989 GTATTTTTTT
22763999 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
22764028 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
22764057 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
22764081 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:22768306 original size:38 final size:38
Alignment explanation
Indices: 22768264--22768341 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
22768254 CTCAGTTTCC
*
22768264 TTAACTAGGTTAACTCCGTGAATCTGGTTTTCTTTAAG
1 TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
* *
22768302 TTAACTAGGTCAACTCTGTGAATCTGGTTTTCTTTCAG
1 TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
22768340 TT
1 TT
22768342 CTATCCAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.44
Consensus pattern (38 bp):
TTAACTAGGTCAACTCCGTGAATCTGGTTTTCTTTAAG
Found at i:22772967 original size:13 final size:13
Alignment explanation
Indices: 22772949--22772973 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22772939 CCGAGCACAC
22772949 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
22772962 GCCCGTGTCCCT
1 GCCCGTGTCCCT
22772974 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:22781415 original size:54 final size:54
Alignment explanation
Indices: 22781330--22781441 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
22781320 CCATATGTCT
* * *
22781330 CACACAAGATGAGACATGGGCGTGTGACCCAAGTAAGTGAGTTACATGGTCTGG
1 CACACAAGATGAGACATGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
* * * *
22781384 CACACAGGTTGAGACATGGGCGCGTGGCCCAAATCAGTGAGTTACACGGTCTGG
1 CACACAAGATGAGACATGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
22781438 CACA
1 CACA
22781442 TGGTTGGGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.31, T:0.19
Consensus pattern (54 bp):
CACACAAGATGAGACATGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
Found at i:22781459 original size:54 final size:54
Alignment explanation
Indices: 22781330--22781459 Score: 145
Period size: 54 Copynumber: 2.4 Consensus size: 54
22781320 CCATATGTCT
* * * * * *
22781330 CACACAAGATGAGACATGGGCGTGTGACCCAAGTAAGTGAGTTACATGGTCTGG
1 CACACAGGTTGAGACAAGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
* * *
22781384 CACACAGGTTGAGACATGGGCGCGTGGCCCAAATCAGTGAGTTACACGGTCTGG
1 CACACAGGTTGAGACAAGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
* *
22781438 CACA-TGGTTGGGTACAAGGGCG
1 CACACAGGTTGAG-ACAAGGGCG
22781460 TGTAAAATGG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 6 0.09
54 59 0.91
ACGTcount: A:0.26, C:0.21, G:0.34, T:0.19
Consensus pattern (54 bp):
CACACAGGTTGAGACAAGGGCGCGTGACCCAAATAAGTGAGTTACACGGTCTGG
Found at i:22783379 original size:39 final size:40
Alignment explanation
Indices: 22783332--22783475 Score: 193
Period size: 39 Copynumber: 3.6 Consensus size: 40
22783322 AATGTTCGAG
22783332 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
* *
22783371 TGATATCCGGGCTAAG-CCCGAAGGCAATTGGGTGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** *
22783410 TGATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
22783450 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
22783476 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 53 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:22786705 original size:40 final size:40
Alignment explanation
Indices: 22786646--22786853 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
22786636 CAATTGAATG
* * * *
22786646 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * ** *
22786686 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
22786726 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
22786766 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
22786806 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
22786846 ATATCCGG
1 ATATCCGG
22786854 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:22786784 original size:80 final size:80
Alignment explanation
Indices: 22786647--22786853 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
22786637 AATTGAATGA
* * ** * * *
22786647 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
22786712 TTGTGCTAG-CG-AC
66 TTGTGCAAGTCGTAC
* * *
22786725 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
22786790 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
22786807 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
22786854 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.95
81 2 0.02
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:22789889 original size:40 final size:40
Alignment explanation
Indices: 22789824--22790067 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
22789814 CGGAATACAA
* ** * * *
22789824 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
22789864 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
22789904 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
22789944 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
22789984 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
22790024 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
22790064 CCGG
1 CCGG
22790068 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:22790255 original size:123 final size:123
Alignment explanation
Indices: 22790036--22790743 Score: 1326
Period size: 123 Copynumber: 5.8 Consensus size: 123
22790026 GGATATAATT
* * * * * * *
22790036 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
22790101 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
22790159 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
22790224 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
22790282 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
22790347 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
22790405 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
22790470 ATAATCATTACACATCCATATTTCATTTTTGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
22790528 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
22790593 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
22790651 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
22790716 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
22790744 CACATAATTC
Statistics
Matches: 574, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 574 1.00
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:22793475 original size:40 final size:40
Alignment explanation
Indices: 22793430--22793597 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
22793420 CGGAATACAA
22793430 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
22793470 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
22793510 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
22793550 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
22793590 CCGGATAT
1 CCGGATAT
22793598 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:22793570 original size:80 final size:80
Alignment explanation
Indices: 22793430--22793597 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
22793420 CGGAATACAA
* *
22793430 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
22793495 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
22793510 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
22793573 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
22793590 CCGGATAT
1 CCGGATAT
22793598 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:22800976 original size:40 final size:39
Alignment explanation
Indices: 22800932--22801105 Score: 222
Period size: 39 Copynumber: 4.4 Consensus size: 39
22800922 GTTCAAAACA
* * ** * *
22800932 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGGTATCATAACTCGCACAATTG
* * *
22800972 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGGTATCATAACTCGCACAATTG
* *
22801012 CCTTCGGGCTTAGCCCGGGTATCAGAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
*
22801051 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
22801090 CCTTCGGGCTTAGCCC
1 CCTTCGGGCTTAGCCC
22801106 AGATATCACT
Statistics
Matches: 121, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 81 0.67
40 40 0.33
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGGTATCATAACTCGCACAATTG
Found at i:22801043 original size:39 final size:39
Alignment explanation
Indices: 22800962--22801114 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
22800952 TATGGTAACC
* * * *
22800962 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGGTATCACAGCT
*
22801002 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCAGAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAGCT
*
22801041 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAGCT
* *
22801080 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCAC
22801115 TCAAACATTC
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCACAGCT
Found at i:22803034 original size:27 final size:28
Alignment explanation
Indices: 22802989--22803044 Score: 105
Period size: 27 Copynumber: 2.0 Consensus size: 28
22802979 GTTCGACTAC
22802989 ACTGACCTTTTTGCATTACGACCTGGAT
1 ACTGACCTTTTTGCATTACGACCTGGAT
22803017 ACTGACC-TTTTGCATTACGACCTGGAT
1 ACTGACCTTTTTGCATTACGACCTGGAT
22803044 A
1 A
22803045 TCATCTCGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (28 bp):
ACTGACCTTTTTGCATTACGACCTGGAT
Found at i:22804155 original size:27 final size:27
Alignment explanation
Indices: 22804125--22804333 Score: 202
Period size: 27 Copynumber: 7.5 Consensus size: 27
22804115 ATAGTGAATC
22804125 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
22804152 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
22804180 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
22804207 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
*
22804235 CGCACACCTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * * *
22804262 CGCAAACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* * **
22804291 CGCGCACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
22804320 TGCACACTTAGTGC
1 CGCACACTTAGTGC
22804334 CATTCTCGCC
Statistics
Matches: 149, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
27 62 0.42
28 50 0.34
29 37 0.25
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:22804196 original size:55 final size:55
Alignment explanation
Indices: 22804125--22804283 Score: 300
Period size: 55 Copynumber: 2.9 Consensus size: 55
22804115 ATAGTGAATC
22804125 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
22804180 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
* *
22804235 CGCACACCTAGTGCTATAAAATCAGCTCGCAAACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
22804284 TTGAGCTCGC
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 102 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:22804319 original size:29 final size:29
Alignment explanation
Indices: 22804125--22804336 Score: 131
Period size: 29 Copynumber: 7.6 Consensus size: 29
22804115 ATAGTGAATC
**
22804125 CGCACACTTAGTG-C-TATAAAATCAGCT
1 CGCACACTTAGTGCCATATAATTTCAGCT
* * **
22804152 CGCACACATAGTGCTATATAA--TCAAATT
1 CGCACACTTAGTGCCATATAATTTC-AGCT
**
22804180 CGCACACTTAGTG-C-TATAAAATCAGCT
1 CGCACACTTAGTGCCATATAATTTCAGCT
* * **
22804207 CGCACACATAGTGCTATATAA--TCAAATT
1 CGCACACTTAGTGCCATATAATTTC-AGCT
* **
22804235 CGCACACCTAGTG-C-TATAAAATCAGCT
1 CGCACACTTAGTGCCATATAATTTCAGCT
* * * *
22804262 CGCAAACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCCATATAATTTCAGCT
*
22804291 CGCGCACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTGCCATATAATTT-CAGCT
*
22804320 TGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
22804337 TCTCGCCACC
Statistics
Matches: 143, Mismatches: 29, Indels: 24
0.73 0.15 0.12
Matches are distributed among these distances:
26 10 0.07
27 43 0.30
28 36 0.25
29 54 0.38
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAATTTCAGCT
Found at i:22811480 original size:39 final size:39
Alignment explanation
Indices: 22811433--22811615 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
22811423 AATGTTCGAG
22811433 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
22811472 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
22811511 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
22811550 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
22811590 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
22811616 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:22815233 original size:147 final size:146
Alignment explanation
Indices: 22815020--22815292 Score: 465
Period size: 147 Copynumber: 1.9 Consensus size: 146
22815010 GACACGCCCA
* * * *
22815020 TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTTATTTGGAACCTATATGGGTTTTTACA
1 TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCACA
22815085 TGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGCCATCGCCCGTGTGCAG
66 TGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGCCATCGCCCGTGTGCAG
22815150 GCAATGCACACGTTCG
131 GCAATGCACACGTTCG
* * *
22815166 TGTCCTTTACCCGTGTTGAATTATTTGGAATTTATTTTTCATTTTGAACCTACAGGGGTTTTCAC
1 TGTCCCTTACCCATGTTGAATTA-TTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCAC
*
22815231 ATGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGTCATCGCCCGTGT
65 ATGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGCCATCGCCCGTGT
22815293 CCAAAAACCT
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
146 21 0.18
147 97 0.82
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (146 bp):
TGTCCCTTACCCATGTTGAATTATTGGAATTTATTTTTCATTTGGAACCTACAGGGGTTTTCACA
TGGCCGAGCACACGCCCGTGTCCCTCACACGGCCTAGACACGCTCGTGCCATCGCCCGTGTGCAG
GCAATGCACACGTTCG
Found at i:22815279 original size:28 final size:29
Alignment explanation
Indices: 22815227--22815281 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
22815217 ACAGGGGTTT
*
22815227 TCACATGGCCGAGCACACGCCCGTGTCCC
1 TCACACGGCCGAGCACACGCCCGTGTCCC
* *
22815256 TCACACGGCCTAG-ACACGCTCGTGTC
1 TCACACGGCCGAGCACACGCCCGTGTC
22815282 ATCGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.18, C:0.42, G:0.24, T:0.16
Consensus pattern (29 bp):
TCACACGGCCGAGCACACGCCCGTGTCCC
Found at i:22818139 original size:39 final size:39
Alignment explanation
Indices: 22818040--22818230 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
22818030 CGAATGATGT
* * * * *
22818040 CCGGGGTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTACTA-AA
* * *
22818080 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22818119 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22818158 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-AA
** * *
22818199 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
22818231 CGTTATATCC
Statistics
Matches: 122, Mismatches: 23, Indels: 12
0.78 0.15 0.08
Matches are distributed among these distances:
39 34 0.28
40 79 0.65
41 9 0.07
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:22818176 original size:79 final size:82
Alignment explanation
Indices: 22818039--22818223 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
22818029 TCGAATGATG
* * * *
22818039 TCCGGGGTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
22818103 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
22818119 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
22818181 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
22818199 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22818224 AGCGAGTCGT
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:22818254 original size:79 final size:79
Alignment explanation
Indices: 22818091--22818256 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
22818081 CGGACTAGGA
* * *
22818091 TCCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
22818156 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
22818170 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
22818234 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
22818249 TCCGAAGG
1 TCCGAAGG
22818257 TACGTGATTC
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 45 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:22820165 original size:39 final size:40
Alignment explanation
Indices: 22820034--22820171 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
22820024 GGATATAATG
* * * **
22820034 ACTCGCTCAAATGCCTTCGGGAC-GAAGCCC-GGTTATAGCG
1 ACTCGCACGAATGCCTTCGGGACTTAA-CCCAGGTT-TAGTA
22820074 ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
* * *
22820114 ACTTGCAC-AATGCCTTCGGG-CTTAGCCC-GGATTTATTA
1 ACTCGCACGAATGCCTTCGGGACTTAACCCAGG-TTTAGTA
22820152 ACTCGCACGAATGCCTTCGG
1 ACTCGCACGAATGCCTTCGG
22820172 ATCCTAGTCT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
37 2 0.02
38 20 0.24
39 23 0.27
40 34 0.40
41 6 0.07
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCAGGTTTAGTA
Found at i:22828118 original size:39 final size:39
Alignment explanation
Indices: 22827987--22828177 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
22827977 GGATATAACG
* ** **
22827987 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
22828027 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
22828067 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
22828105 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
22828145 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
22828178 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:22828122 original size:78 final size:80
Alignment explanation
Indices: 22828027--22828177 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
22828017 GGTTATAGCG
* * * *
22828027 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
22828089 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
22828105 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
22828170 AGCCCGGA
66 AGCCCGGA
22828178 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:22836295 original size:16 final size:16
Alignment explanation
Indices: 22836274--22836305 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22836264 TATGAAGCTT
22836274 GCTAATGATATATGTG
1 GCTAATGATATATGTG
22836290 GCTAATGATATATGTG
1 GCTAATGATATATGTG
22836306 ATGGTGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (16 bp):
GCTAATGATATATGTG
Found at i:22837375 original size:79 final size:81
Alignment explanation
Indices: 22837243--22837423 Score: 203
Period size: 79 Copynumber: 2.3 Consensus size: 81
22837233 ATGATGTCCA
* * *
22837243 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTCGAT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG-T
*
22837307 -CGAGTTAATA-AATCCG
65 GCGAGTCAATATAA-CCG
* **
22837323 GGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTCGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTCGT
*
22837385 GCGAGTCACTATAACCG
65 GCGAGTCAATATAACCG
**
22837402 GGCTTCGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
22837424 AGCGAGTCGT
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.63
80 30 0.35
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCGTG
CGAGTCAATATAACCG
Found at i:22837380 original size:40 final size:40
Alignment explanation
Indices: 22837243--22837423 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
22837233 ATGATGTCCA
* *
22837243 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCG
* * * * *
22837283 GACTAGGAT-CCGAAGGCATTCGAT-CGAGTTAATAAATCCG
1 GGCTAAG-TCCCGAAGGCATTTG-TGCAAGTTACTAAATCCG
*
22837323 GGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAACCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
* * * *
22837362 GGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATCCG
**
22837402 GGCTTCGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
22837424 AGCGAGTCGT
Statistics
Matches: 113, Mismatches: 21, Indels: 14
0.76 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
39 31 0.27
40 73 0.65
41 7 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
Found at i:22843225 original size:43 final size:43
Alignment explanation
Indices: 22843164--22843345 Score: 238
Period size: 43 Copynumber: 4.2 Consensus size: 43
22843154 CACATATCAG
* *** * * *
22843164 AATCACATCTCGATGCCAACGTATTAAATGTGGTCTTACTCGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
* *
22843207 AATCACATATCGATGCCAACGTCCCAGACATGGTCTTACATGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
* *
22843250 AATCACATATCGATTCCAACGTCCCAGACGTTGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
* * *
22843293 AATCACATATCGATGCCAATGTCCCAGATGTAGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
22843336 AATCACATAT
1 AATCACATAT
22843346 TGAAAATCCT
Statistics
Matches: 122, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 122 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGT
Found at i:22843257 original size:99 final size:99
Alignment explanation
Indices: 22843077--22843260 Score: 257
Period size: 99 Copynumber: 1.9 Consensus size: 99
22843067 ATATCGTACA
* * * *
22843077 ATGCCAACGTCCTAGATGTGGTCTTACATGTAATTACATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTACTAAATGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGT
22843142 CTTACTCGTAAACACATATCAGAATCACATCTCG
66 CTTACTCGTAAACACATATCAGAATCACATCTCG
* *
22843176 ATGCCAACGTATTAAATGTGGTCTTAC-TCGTAATCACATATCGATGCCAAC-GTCCCAGACATG
1 ATGCCAACGTACTAAATGTGGTCTTACAT-GTAATCACATATCGATGCC-ACTGTCCCAGACAGG
*
22843239 GTCTTACAT-GTAATCACATATC
64 GTCTTAC-TCGTAAACACATATC
22843261 GATTCCAACG
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
98 1 0.01
99 71 0.95
100 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (99 bp):
ATGCCAACGTACTAAATGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGT
CTTACTCGTAAACACATATCAGAATCACATCTCG
Found at i:22844025 original size:25 final size:24
Alignment explanation
Indices: 22843986--22844033 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
22843976 AACATCACAA
* *
22843986 AACTCAATTATTCATCAATCTCAT
1 AACTCAAATATTCATCAAACTCAT
22844010 AACTCAAAATATTCATCAAACTCA
1 AACTC-AAATATTCATCAAACTCA
22844034 AAAAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (24 bp):
AACTCAAATATTCATCAAACTCAT
Found at i:22846377 original size:12 final size:13
Alignment explanation
Indices: 22846360--22846397 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
22846350 ATCCTGGAAT
22846360 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
22846372 ATTAAGAACACATA
1 ATTAAGAACA-AGA
22846386 ATTAAGAACAAG
1 ATTAAGAACAAG
22846398 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:22850435 original size:93 final size:93
Alignment explanation
Indices: 22850323--22850494 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
22850313 CGCCCATAAG
* *
22850323 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
22850388 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
22850416 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22850481 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
22850495 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22850491 original size:46 final size:46
Alignment explanation
Indices: 22850316--22850491 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
22850306 TGTAACCCGC
* * *
22850316 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
22850362 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
22850412 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
22850455 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
22850492 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:22857883 original size:40 final size:40
Alignment explanation
Indices: 22857828--22858045 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
22857818 CGGATGATAA
* *
22857828 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
22857868 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
22857908 CCGGGCTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22857948 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
22857988 CCGAGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
22858028 CC-AGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22858046 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 145 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:22866856 original size:16 final size:15
Alignment explanation
Indices: 22866835--22866876 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
22866825 TTTATTATTA
22866835 AATTATATTTAATAAT
1 AATTATATTTAA-AAT
22866851 AATTATA-TTAAAAT
1 AATTATATTTAAAAT
22866865 ATGATTATATTT
1 A--ATTATATTT
22866877 TTTATTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 4 0.17
15 4 0.17
16 13 0.57
17 2 0.09
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
AATTATATTTAAAAT
Found at i:22866892 original size:62 final size:61
Alignment explanation
Indices: 22866752--22866915 Score: 163
Period size: 62 Copynumber: 2.6 Consensus size: 61
22866742 TTTTCTAACA
* * * * * *
22866752 TTATATATTTTTATTTTATAATT-TA-TATTTTTAATAATAATATTTTAAAATGTTATTAAG
1 TTATATA-TTTTATTTTATTATTAAATTATATTTAATAATAATATATTAAAATATGATTAAG
*
22866812 TTATATATTTTTTTTTATTATTAAATTATATTTAATAATAATTATATTAAAATATGATTATA-
1 TTATATATTTTATTTTATTATTAAATTATATTTAATAATAA-TATATTAAAATATGATTA-AG
* * *
22866874 TTTTTTATTTTATTTTATTTTTATTAAATTATATATAATAAT
1 TTATATATTTTATTTTA---TTATTAAATTATATTTAATAAT
22866916 CCTATTAAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
59 13 0.15
60 8 0.09
61 14 0.16
62 29 0.34
63 1 0.01
65 21 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (61 bp):
TTATATATTTTATTTTATTATTAAATTATATTTAATAATAATATATTAAAATATGATTAAG
Found at i:22871374 original size:93 final size:93
Alignment explanation
Indices: 22871262--22871433 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22871252 GCCCATAAGT
* *
22871262 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22871327 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
22871355 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22871420 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
22871434 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22871429 original size:46 final size:46
Alignment explanation
Indices: 22871254--22871429 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
22871244 TGTAACCCGC
* * *
22871254 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
22871300 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
22871350 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
22871393 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22871430 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:22873850 original size:29 final size:29
Alignment explanation
Indices: 22873811--22873898 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
22873801 CAAAGATAAC
*
22873811 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
22873840 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
22873869 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
22873899 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:22873869 original size:15 final size:15
Alignment explanation
Indices: 22873811--22873889 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
22873801 CAAAGATAAC
*
22873811 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
22873825 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
22873840 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
22873854 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
22873869 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
22873884 AAGAAA
1 AAGAAA
22873890 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:22873898 original size:15 final size:15
Alignment explanation
Indices: 22873822--22873898 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
22873812 AGAAAACCGA
22873822 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
22873837 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
22873851 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
22873865 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
22873881 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
22873896 ATA
1 ATA
22873899 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22876903 original size:46 final size:46
Alignment explanation
Indices: 22876836--22876964 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
22876826 TGTAACCCGC
* * *
22876836 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
22876882 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
22876928 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22876965 TGCCCAAATA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:22879919 original size:40 final size:40
Alignment explanation
Indices: 22879874--22880004 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
22879864 CGGAATATAA
22879874 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
22879914 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
22879954 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
22879994 CCGGATATAAT
1 CCGGATATAAT
22880005 TTCCAGCATC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 76 0.99
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:22880024 original size:40 final size:40
Alignment explanation
Indices: 22879874--22880040 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
22879864 CGGAATATAA
* ** *
22879874 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* **
22879914 CCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
22879954 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
22879994 CCGGATATAATTTCCAGCATC-ATTGTCTTCGGG-CTTGGC
1 CCGGATATAACCACCAGCA-CAATTGCCTTCGGGTCTTAGC
22880033 CCGGATAT
1 CCGGATAT
22880041 CATTCAATTT
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 14 0.13
40 88 0.84
41 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:22883867 original size:239 final size:239
Alignment explanation
Indices: 22883445--22883908 Score: 664
Period size: 239 Copynumber: 1.9 Consensus size: 239
22883435 TATGAGTATA
* * *
22883445 TCTATTTCATGTTGTATGAACCCGTAGTTAGGTATAAACCTGGTGACTGAGTATCCTTACATGCA
1 TCTATTTCATGTTGTATGAACCCGCAATTAGATATAAACCTGGTGACTGAGTATCCTTACATGCA
* * *
22883510 TGTATGTCGAATGTTTATTTAGTTATAAATTGAAGTGTTAATAGGTGGCGTACTGTATGCTATAG
66 TATATGTCGAATGTTTATTTAGTTATAAATTGAAGTGTTAATAGGTGGCATACTATATGCTATAG
* * * * *
22883575 AAATAAATACAATATATTGCGTGAAATGCTTTTATGTACATGATGCGGAGAAAGGAGGGATATAT
131 AAATAAATACAATAAATTGCGTGAAATGCTTTTATATACATGATGCAGAGAAAGGAAGGATATAC
* *
22883640 TTTGATGGGGTAGTTAAAGATTGGAATACTTTCATGAGTCTATG
196 TTTGACGGGGTAGTTAAAGATAGGAATACTTTCATGAGTCTATG
** ** *
22883684 TCTATTTTGTGTTGTATGAACCCGCAATT-GTATATAAACCTGGTGACTGAGTATGTTTGCATGC
1 TCTATTTCATGTTGTATGAACCCGCAATTAG-ATATAAACCTGGTGACTGAGTATCCTTACATGC
* * * *
22883748 ATATATG-CTGGATGTTTATTTAGTTATAAATTGAAGTGTTAATGGGTGGTATACTATATGTTAT
65 ATATATGTC-GAATGTTTATTTAGTTATAAATTGAAGTGTTAATAGGTGGCATACTATATGCTAT
*
22883812 AGAAATAAATACAATAAATTGCGTGAAATG-TTTGTATATATATGATGCAGAGAAAGGAAGGATA
129 AGAAATAAATACAATAAATTGCGTGAAATGCTTT-TATATACATGATGCAGAGAAAGGAAGGATA
*
22883876 TACTTTGACGGGGTAGTTGAAGATAGGAATACT
193 TACTTTGACGGGGTAGTTAAAGATAGGAATACT
22883909 AGATGAAAAG
Statistics
Matches: 198, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
238 5 0.03
239 193 0.97
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (239 bp):
TCTATTTCATGTTGTATGAACCCGCAATTAGATATAAACCTGGTGACTGAGTATCCTTACATGCA
TATATGTCGAATGTTTATTTAGTTATAAATTGAAGTGTTAATAGGTGGCATACTATATGCTATAG
AAATAAATACAATAAATTGCGTGAAATGCTTTTATATACATGATGCAGAGAAAGGAAGGATATAC
TTTGACGGGGTAGTTAAAGATAGGAATACTTTCATGAGTCTATG
Found at i:22884217 original size:27 final size:27
Alignment explanation
Indices: 22884186--22884268 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
22884176 GGCAACATGA
*
22884186 TAGTCCGTCGGGATAGTAAACATAGGG
1 TAGTCCGTCGGGACAGTAAACATAGGG
* *
22884213 TAGTCCGCCGGGACAGTAAACATGGGG
1 TAGTCCGTCGGGACAGTAAACATAGGG
* * * *
22884240 TAATCCATCGGGACAATAAACACAGGG
1 TAGTCCGTCGGGACAGTAAACATAGGG
22884267 TA
1 TA
22884269 ATCTATTGAG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.19, G:0.30, T:0.18
Consensus pattern (27 bp):
TAGTCCGTCGGGACAGTAAACATAGGG
Found at i:22884767 original size:13 final size:13
Alignment explanation
Indices: 22884749--22884777 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22884739 GTAAGGAGAT
22884749 AGTTGAAAGAATG
1 AGTTGAAAGAATG
22884762 AGTTGAAAGAATG
1 AGTTGAAAGAATG
22884775 AGT
1 AGT
22884778 AGATAACAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.31, T:0.24
Consensus pattern (13 bp):
AGTTGAAAGAATG
Found at i:22892810 original size:20 final size:19
Alignment explanation
Indices: 22892765--22892802 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22892755 CATCCAAACA
22892765 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
22892784 CCAGAAAAGTAAATCATTT
1 CCAGAAAAGTAAATCATTT
22892803 TCTAGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (19 bp):
CCAGAAAAGTAAATCATTT
Found at i:22893400 original size:15 final size:13
Alignment explanation
Indices: 22893380--22893432 Score: 54
Period size: 13 Copynumber: 4.0 Consensus size: 13
22893370 TTAGCCTTAG
22893380 TTTTTCTTTTCTTT
1 TTTTTC-TTTCTTT
22893394 CTTTTTCTTTCTTT
1 -TTTTTCTTTCTTT
*
22893408 TTTTT-TTACTTT
1 TTTTTCTTTCTTT
* *
22893420 TTATTGTTTCTTT
1 TTTTTCTTTCTTT
22893433 ACGCATTCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
12 10 0.29
13 11 0.32
14 7 0.21
15 6 0.18
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (13 bp):
TTTTTCTTTCTTT
Found at i:22893408 original size:25 final size:25
Alignment explanation
Indices: 22893380--22893432 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
22893370 TTAGCCTTAG
*
22893380 TTTTTCTTTT-CTTTCTTTTTCTTTC
1 TTTTTCTTTTACTTT-TTATTCTTTC
* *
22893405 TTTTTTTTTTACTTTTTATTGTTTC
1 TTTTTCTTTTACTTTTTATTCTTTC
22893430 TTT
1 TTT
22893433 ACGCATTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.04, C:0.13, G:0.02, T:0.81
Consensus pattern (25 bp):
TTTTTCTTTTACTTTTTATTCTTTC
Found at i:22895939 original size:16 final size:17
Alignment explanation
Indices: 22895920--22895951 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22895910 ATGCCAAGCA
22895920 AATCAAA-ACAAGATTC
1 AATCAAATACAAGATTC
22895936 AATCAAATACAAGATT
1 AATCAAATACAAGATT
22895952 TGAGAACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (17 bp):
AATCAAATACAAGATTC
Found at i:22897172 original size:118 final size:119
Alignment explanation
Indices: 22896963--22897197 Score: 400
Period size: 118 Copynumber: 2.0 Consensus size: 119
22896953 AGGAGAAAAA
*
22896963 TGAAAAATTGACGGTTAGGTCCTTTTTTGCCATTTTGGTGTCAAGGTAAGTTCATACGTAAATAA
1 TGAAAAATTGACGGTTAGGTCCTTTTTTGCCATTTTGGTGTCAAGATAAGTTCATACGTAAATAA
**
22897028 TTTAACATTATGTTATGTATTTAATATTTCAATATTACATGAATTATATACATT
66 TGCAACATTATGTTATGTATTTAATATTTCAATATTACATGAATTATATACATT
* *
22897082 TGAAAAATTGACGGTTAGGTCC-TTTTTGCCATTTTGGTGTCGAGATAAGTTCATGCGTAAATAA
1 TGAAAAATTGACGGTTAGGTCCTTTTTTGCCATTTTGGTGTCAAGATAAGTTCATACGTAAATAA
* *
22897146 TGCAACCTTATGTTATGTATTTAATATTTCGATATTACATGAATTATATACA
66 TGCAACATTATGTTATGTATTTAATATTTCAATATTACATGAATTATATACA
22897198 ATTATTTTTA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
118 87 0.80
119 22 0.20
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (119 bp):
TGAAAAATTGACGGTTAGGTCCTTTTTTGCCATTTTGGTGTCAAGATAAGTTCATACGTAAATAA
TGCAACATTATGTTATGTATTTAATATTTCAATATTACATGAATTATATACATT
Found at i:22899954 original size:28 final size:27
Alignment explanation
Indices: 22899923--22899976 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22899913 CTTTTGAGTT
*
22899923 AATAAATTCTTTTTAAGTTTTTTTTTTC
1 AATAAATTC-TTTTAAGTTTTCTTTTTC
* *
22899951 AATAATTTCTTTTGAGTTTTCTTTTT
1 AATAAATTCTTTTAAGTTTTCTTTTT
22899977 GAGGCCTACC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.22, C:0.07, G:0.06, T:0.65
Consensus pattern (27 bp):
AATAAATTCTTTTAAGTTTTCTTTTTC
Found at i:22900068 original size:9 final size:9
Alignment explanation
Indices: 22900048--22900080 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
22900038 CTTTGATTTA
22900048 TTATTCTATT
1 TTATT-TATT
22900058 TTATTTATT
1 TTATTTATT
22900067 TTATTTA-T
1 TTATTTATT
22900075 TTATTT
1 TTATTT
22900081 TGACCTGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 7 0.30
9 11 0.48
10 5 0.22
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (9 bp):
TTATTTATT
Found at i:22900073 original size:13 final size:13
Alignment explanation
Indices: 22900043--22900081 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
22900033 CTAATCTTTG
*
22900043 ATTTA-TTATTCT
1 ATTTATTTATTTT
22900055 ATTTTATTTATTTT
1 A-TTTATTTATTTT
22900069 ATTTATTTATTTT
1 ATTTATTTATTTT
22900082 GACCTGGATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 16 0.67
14 7 0.29
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
ATTTATTTATTTT
Found at i:22908170 original size:19 final size:20
Alignment explanation
Indices: 22908143--22908197 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
22908133 AATTAATGTA
*
22908143 TTAACAAA-TATTTATATTT
1 TTAACAAATTATTTAAATTT
*
22908162 TTAAGAAATTATTTAAA-TT
1 TTAACAAATTATTTAAATTT
22908181 TTAACATAATGTATTTA
1 TTAACA-AAT-TATTTA
22908198 CAAATACTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 14 0.47
20 10 0.33
21 6 0.20
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (20 bp):
TTAACAAATTATTTAAATTT
Found at i:22908316 original size:21 final size:22
Alignment explanation
Indices: 22908258--22908323 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
22908248 TGTTTGTTTG
* * *
22908258 ATAAAGAAATATTACTATTTTTT
1 ATAAAGTAGTATTATTA-TTTTT
22908281 ATAAAGTAGTATTATTATTTTT
1 ATAAAGTAGTATTATTATTTTT
22908303 ATAAA-TA-TATTTATTATTTTT
1 ATAAAGTAGTA-TTATTATTTTT
22908324 TCAATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
20 2 0.05
21 13 0.33
22 10 0.26
23 14 0.36
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.55
Consensus pattern (22 bp):
ATAAAGTAGTATTATTATTTTT
Found at i:22908324 original size:22 final size:23
Alignment explanation
Indices: 22908258--22908324 Score: 77
Period size: 22 Copynumber: 3.0 Consensus size: 23
22908248 TGTTTGTTTG
* * *
22908258 ATAAAGAAATATTACTATTTTTT
1 ATAAAGTAGTATTATTATTTTTT
22908281 ATAAAGTAGTATTATTA-TTTTT
1 ATAAAGTAGTATTATTATTTTTT
22908303 ATAAA-TA-TATTTATTATTTTTT
1 ATAAAGTAGTA-TTATTATTTTTT
22908325 CAATTAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
20 2 0.05
21 8 0.21
22 15 0.38
23 14 0.36
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (23 bp):
ATAAAGTAGTATTATTATTTTTT
Found at i:22911617 original size:26 final size:27
Alignment explanation
Indices: 22911598--22911648 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
22911588 ATTAAATTTT
22911598 AACAAAAA-TATAAAAAATTAAAATCA
1 AACAAAAATTATAAAAAATTAAAATCA
22911624 AACAAAAATTAT-AAAAATATAAAAT
1 AACAAAAATTATAAAAAAT-TAAAAT
22911649 ATAAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.22
Consensus pattern (27 bp):
AACAAAAATTATAAAAAATTAAAATCA
Found at i:22911653 original size:15 final size:15
Alignment explanation
Indices: 22911628--22911664 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
22911618 AAATCAAACA
22911628 AAAATTATAAAAATAT
1 AAAA-TATAAAAATAT
*
22911644 AAAATATAAAATTAT
1 AAAATATAAAAATAT
22911659 AAAATA
1 AAAATA
22911665 AAGTCGTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATATAAAAATAT
Found at i:22911659 original size:8 final size:8
Alignment explanation
Indices: 22911628--22911663 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
22911618 AAATCAAACA
22911628 AAAATTAT
1 AAAATTAT
*
22911636 AAAAATAT
1 AAAATTAT
22911644 AAAA-TAT
1 AAAATTAT
22911651 AAAATTAT
1 AAAATTAT
22911659 AAAAT
1 AAAAT
22911664 AAAGTCGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAATTAT
Found at i:22916638 original size:17 final size:17
Alignment explanation
Indices: 22916587--22916644 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
22916577 TTAAAAGGAT
* *
22916587 AAAATTACTAACATTAA
1 AAAATTAATTACATTAA
* ** *
22916604 AATATT-ATTTGATAAA
1 AAAATTAATTACATTAA
22916620 AAAATTAATTACATTAA
1 AAAATTAATTACATTAA
22916637 AAAATTAA
1 AAAATTAA
22916645 AAAAATGTGA
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
16 10 0.33
17 20 0.67
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAATTAATTACATTAA
Found at i:22920801 original size:31 final size:30
Alignment explanation
Indices: 22920711--22920812 Score: 93
Period size: 29 Copynumber: 3.4 Consensus size: 30
22920701 CAAAAAATTC
*
22920711 CACATATAACAGGTT-TCGCCACTAGGGC-T
1 CACATATAACAGGTTCT-GCCACTAAGGCTT
* ** * *
22920740 CACATATAACAAAGAACAGCCACAAAGGCTT
1 CACATATAAC-AGGTTCTGCCACTAAGGCTT
*
22920771 CCACATATAACAGGTTCTGCCACTACGGCTT
1 -CACATATAACAGGTTCTGCCACTAAGGCTT
22920802 -ACATATAACAG
1 CACATATAACAG
22920813 AATTAACCAC
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
29 21 0.37
30 11 0.19
31 15 0.26
32 10 0.18
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (30 bp):
CACATATAACAGGTTCTGCCACTAAGGCTT
Found at i:22920864 original size:29 final size:29
Alignment explanation
Indices: 22920742--22920865 Score: 81
Period size: 29 Copynumber: 4.2 Consensus size: 29
22920732 CTAGGGCTCA
*
22920742 CATATAACAAAGAA-CAGCCACAAAGGCTTCC
1 CATATAAC--AGAATCAACCACAAAGGCTT-C
** ** * * *
22920773 ACATATAACAGGTTCTGCCACTACGGCTTA
1 -CATATAACAGAATCAACCACAAAGGCTTC
* *
22920803 CATATAACAGAATTAACCACAAAGAC-TC
1 CATATAACAGAATCAACCACAAAGGCTTC
* *
22920831 ACATATCACAGAATCACCCACAAAGGCTTC
1 -CATATAACAGAATCAACCACAAAGGCTTC
22920861 CATAT
1 CATAT
22920866 TTTGGTAAAT
Statistics
Matches: 70, Mismatches: 19, Indels: 9
0.71 0.19 0.09
Matches are distributed among these distances:
28 1 0.01
29 45 0.64
30 4 0.06
31 12 0.17
32 8 0.11
ACGTcount: A:0.41, C:0.28, G:0.11, T:0.19
Consensus pattern (29 bp):
CATATAACAGAATCAACCACAAAGGCTTC
Found at i:22921054 original size:55 final size:55
Alignment explanation
Indices: 22920966--22921121 Score: 199
Period size: 55 Copynumber: 2.8 Consensus size: 55
22920956 TTCTTTCCTT
* * * * * *
22920966 ATATGACGCCATAGTTCTAGACCAGGTCTTACACTATGTGGTCTT-TTTATCCCC
1 ATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTATCCCC
* *
22921020 ATATGATGAT-ATAGTCCCAGAACTAGGTCTTACACTATATGGTCTTCTTTTTCCTC
1 ATATGATG-TCATAGTCCCAG-ACTAGGTCTTACACTATATGGTCTTCTTTATCCCC
*
22921076 ATATGTTGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTC
1 ATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTC
22921122 ACTTGCTTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
54 15 0.17
55 50 0.56
56 24 0.27
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (55 bp):
ATATGATGTCATAGTCCCAGACTAGGTCTTACACTATATGGTCTTCTTTATCCCC
Found at i:22921601 original size:4 final size:4
Alignment explanation
Indices: 22921592--22921654 Score: 56
Period size: 4 Copynumber: 15.2 Consensus size: 4
22921582 AAAAAGAAAT
* * * *
22921592 AGAA AGAA AGAA AGAA ACAG AGAA AGCA A-AA CGAA TTAGAAA AGAA AGAA
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA --AG-AA AGAA AGAA
22921642 AGAA AGAA AGAA A
1 AGAA AGAA AGAA A
22921655 AATAAAAGGG
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
3 1 0.02
4 41 0.87
5 2 0.04
6 1 0.02
7 2 0.04
ACGTcount: A:0.70, C:0.05, G:0.22, T:0.03
Consensus pattern (4 bp):
AGAA
Found at i:22922624 original size:41 final size:38
Alignment explanation
Indices: 22922569--22922676 Score: 110
Period size: 38 Copynumber: 2.7 Consensus size: 38
22922559 ACTTTGAGTC
22922569 GATGAGACACTGGGTGTCAACTTACTACTTTGGATTAATT
1 GATGAGACACTGGGTGTCAA-TTA-TACTTTGGATTAATT
** * * * *
22922609 CGATGAGGTAGTGGGTGCCAATT-TACTTTGGTTTAGTT
1 -GATGAGACACTGGGTGTCAATTATACTTTGGATTAATT
22922647 GATGAGACACTGGGTGTCAAATTATTACTT
1 GATGAGACACTGGGTGTC-AATTA-TACTT
22922677 CTAATTATCC
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
37 14 0.26
38 17 0.31
40 7 0.13
41 16 0.30
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (38 bp):
GATGAGACACTGGGTGTCAATTATACTTTGGATTAATT
Found at i:22922661 original size:37 final size:40
Alignment explanation
Indices: 22922567--22922702 Score: 111
Period size: 40 Copynumber: 3.5 Consensus size: 40
22922557 CGACTTTGAG
*
22922567 TCGATGAGACACTGGGTGTCAACTTACTACTTTGGATTAAT
1 TCGATGAGACACTGGGTGCCAACTTA-TACTTTGGATTAAT
** * * *
22922608 TCGATGAGGTAGTGGGTGCCAA-TT-TACTTTGGTTTAGT
1 TCGATGAGACACTGGGTGCCAACTTATACTTTGGATTAAT
* * *
22922646 T-GATGAGACACTGGGTGTCAAATTATTACTTCT-AATT-AT
1 TCGATGAGACACTGGGTGCCAACTTA-TACTT-TGGATTAAT
* *
22922685 CCGATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
22922703 GCAAACTAGT
Statistics
Matches: 75, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
37 16 0.21
38 15 0.20
39 1 0.01
40 24 0.32
41 19 0.25
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (40 bp):
TCGATGAGACACTGGGTGCCAACTTATACTTTGGATTAAT
Found at i:22934491 original size:43 final size:43
Alignment explanation
Indices: 22934444--22934527 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
22934434 TCGAGCCGAT
*
22934444 GTACCCCGAGCTCACCCTGGAACTTTGTTTGGCCTTTCACTAC
1 GTACCCCGAGCTCACCCTGGAACTCTGTTTGGCCTTTCACTAC
22934487 GTACCCCGAGCTCACCCTGGAACTCTGTTTGGCCTTTCACT
1 GTACCCCGAGCTCACCCTGGAACTCTGTTTGGCCTTTCACT
22934528 TCTGAACCGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.15, C:0.36, G:0.19, T:0.30
Consensus pattern (43 bp):
GTACCCCGAGCTCACCCTGGAACTCTGTTTGGCCTTTCACTAC
Found at i:22936315 original size:53 final size:53
Alignment explanation
Indices: 22936131--22936385 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
22936121 ATTAGGGTTT
* *
22936131 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGAAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * *
22936186 AAGGAAATCATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * *
22936241 AGAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 A-AGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
22936294 AAGGATACCATGTAAGGCCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * * *
22936343 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
22936386 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 26, Indels: 18
0.79 0.12 0.08
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 7 0.04
53 44 0.26
54 7 0.04
55 68 0.40
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:22936337 original size:108 final size:110
Alignment explanation
Indices: 22936138--22936338 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
22936128 TTTAAGGATA
* *
22936138 CCATGTAAGACCATGCCAAGGCATGGCAATTGGAAAGGTTTCTAAGGCAAGGAAATCATGTAATA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGAAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
22936203 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAGAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
** *
22936248 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGAAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
22936310 GCCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
22936339 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 6 0.07
110 27 0.33
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGAAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAGAGGTC
Found at i:22936598 original size:16 final size:16
Alignment explanation
Indices: 22936577--22936607 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22936567 ATAAATTTGA
*
22936577 TTAAGTGAGTAAGTAT
1 TTAAGTAAGTAAGTAT
22936593 TTAAGTAAGTAAGTA
1 TTAAGTAAGTAAGTA
22936608 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22937906 original size:2 final size:2
Alignment explanation
Indices: 22937899--22937943 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
22937889 CATTTTAACT
22937899 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22937941 TA T
1 TA T
22937944 CACAAATCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22939625 original size:19 final size:19
Alignment explanation
Indices: 22939601--22939641 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
22939591 TTCATTTTGA
22939601 GTATGGCATATATAGCATC
1 GTATGGCATATATAGCATC
22939620 GTATGGCATATATAGCATC
1 GTATGGCATATATAGCATC
22939639 GTA
1 GTA
22939642 GCTATTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (19 bp):
GTATGGCATATATAGCATC
Found at i:22943661 original size:14 final size:15
Alignment explanation
Indices: 22943642--22943671 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
22943632 ATATTTGACT
22943642 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
22943656 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
22943671 T
1 T
22943672 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:22953201 original size:46 final size:46
Alignment explanation
Indices: 22953134--22953305 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
22953124 AACCCGCCCC
* * * *
22953134 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
*
22953180 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTCACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTCACATCCA
* * * *
22953228 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCTA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
*
22953273 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
22953306 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 1 0.01
46 59 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACATCCA
Found at i:22953248 original size:93 final size:93
Alignment explanation
Indices: 22953139--22953309 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
22953129 GCCCCTAAGT
* * * *
22953139 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
22953204 CGAGTTCGGATGCCTAGTCACATCTCAC
66 CGAGTTCGGATGCCTAGTCACATCTCAC
* * *
22953232 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCTATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
22953297 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22953310 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTCACATCTCAC
Found at i:22953763 original size:30 final size:30
Alignment explanation
Indices: 22953729--22953788 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22953719 ATTTAATACG
22953729 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
22953759 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
22953789 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:22955654 original size:46 final size:45
Alignment explanation
Indices: 22955510--22955677 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
22955500 TTTGTGTGAT
*
22955510 AGTGTAAGACATGTCTGGGACATGAATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCAC-TTGATGAGAGCC
* * *
22955556 AGTGTATGACCATGTCTGGGACATGGCATCGACA-TTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGCCACTT--GATGAGAGCC
* *
22955604 AGTGTAAGATATGTCTGGGACGTGCATCGGCCACTTGATGCA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACTTGATG-AGAGCC
* *
22955650 AGTGTAAGGCATGTCTAGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
22955678 TACTTCATGA
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
45 2 0.02
46 44 0.44
47 33 0.33
48 22 0.22
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACTTGATGAGAGCC
Found at i:22957309 original size:49 final size:49
Alignment explanation
Indices: 22957232--22957408 Score: 218
Period size: 48 Copynumber: 3.7 Consensus size: 49
22957222 AAGGGTAAGA
* * *
22957232 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-ATATCGG
* *
22957282 TG-CAATGCCATGTTCCAAACATGGTCTTACACTAGCTCAC-ATATCGAG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAATATCG-G
* **
22957330 -GCCAATGCCTTGTCCCAAACATGGTCTTACACTAGCTCTC-ATATCAA
1 TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAATATCGG
* *
22957377 TGCCTATGCCATGTTCCAAACATGGTCTTACA
1 TGCCAATGCCATGTCCCAAACATGGTCTTACA
22957409 TCGGCTCACA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
47 7 0.06
48 69 0.62
49 33 0.30
50 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAATATCGG
Found at i:22961478 original size:14 final size:14
Alignment explanation
Indices: 22961459--22961487 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22961449 AAACTTACTG
22961459 CCACAGTTTACTAA
1 CCACAGTTTACTAA
22961473 CCACAGTTTACTAA
1 CCACAGTTTACTAA
22961487 C
1 C
22961488 ACGTTATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.28
Consensus pattern (14 bp):
CCACAGTTTACTAA
Found at i:22964759 original size:48 final size:48
Alignment explanation
Indices: 22964686--22965005 Score: 356
Period size: 48 Copynumber: 6.7 Consensus size: 48
22964676 AAAGGGTAAG
* * * *
22964686 ATGCCGATGCCATGTCCCAGACATGGTCTTAGACTAACTCACATATCG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * * *
22964734 AGGCCGAAGCCATGTCCCATACATGGTCTTACACTAGCTCTCA-ATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* ** * * *
22964781 ATGCCAATATCATGTTCCAAACATGGTCTTACATTGGCTCACATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
22964829 AAGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * * * **
22964877 ATGTCGATG-CATGTTCCAAACATAGTCTTACACTGGCTCACATATTG
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* ** *
22964924 AGGCCGATGCCATGTCCCAGTCATGGTCTTACACTAGCTCTCATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
* * *
22964972 ATGCCTATTCCATGTTCCAAACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACAC
22965006 CGACTCACAT
Statistics
Matches: 219, Mismatches: 51, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
47 74 0.34
48 145 0.66
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCA
Found at i:22964853 original size:95 final size:95
Alignment explanation
Indices: 22964696--22965016 Score: 446
Period size: 95 Copynumber: 3.4 Consensus size: 95
22964686 ATGCCGATGC
* * * ** * *
22964696 CATGTCCCAGACATGGTCTTAGACTAACTCACATATCGAGGCCGAAGCCATGTCCCATACATGGT
1 CATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
22964761 CTTACACTAGCTCTCA-ATCAATGCCAATAT
66 CTTACACTAGCTCTCATATCAATGCCAAT-T
* * *
22964791 CATGTTCCAAACATGGTCTTACATTGGCTCACATATCAAAGCCGATGCCATGTCCCAGACATGGT
1 CATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
* * *
22964856 CTTACACTAGCTCTCATATCAATGTCGATG
66 CTTACACTAGCTCTCATATCAATGCCAATT
* * *
22964886 CATGTTCCAAACATAGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGTCATGGT
1 CATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
*
22964951 CTTACACTAGCTCTCATATCAATGCCTATT
66 CTTACACTAGCTCTCATATCAATGCCAATT
* *
22964981 CCATGTTCCAAACATGGTCTTACACCGACTCACATA
1 -CATGTTCCAAACATGGTCTTACACTGGCTCACATA
22965017 ACCTTAGTAT
Statistics
Matches: 199, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
95 157 0.79
96 42 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (95 bp):
CATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCCAGACATGGT
CTTACACTAGCTCTCATATCAATGCCAATT
Found at i:22964949 original size:143 final size:143
Alignment explanation
Indices: 22964688--22965016 Score: 363
Period size: 143 Copynumber: 2.3 Consensus size: 143
22964678 AGGGTAAGAT
* *
22964688 GCCGATGCCATGTCCCAGACATGGTCTTAGACTAACTCACATATCGAGGCCGAAGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCACATATCAAGGCCGAAGCCATGTCCCA
* * * * * * * *
22964753 TACATGGTCTTACACTAGCTCTCAATCAATGCCAATATCATGTTCCAAACATGGTCTTACATTGG
66 AACATAGTCTTACACTAGCTCACAATCAAGGCCAATACCATGTCCCAAACATGGTCTTACACTAG
22964818 CTCACATATCAAA
131 CTCACATATCAAA
* * * * * *
22964831 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATG-CATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCACATATCAAGGCCGAAGCCATGTCCCA
* ** * * **
22964895 AACATAGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGTCATGGTCTTACACTA
66 AACATAGTCTTACACTAGCTCACA-ATCAAGGCCAATACCATGTCCCAAACATGGTCTTACACTA
* *
22964960 GCTCTCATATCAAT
130 GCTCACATATCAAA
* * * * **
22964974 GCCTATTCCATGTTCCAAACATGGTCTTACACCGACTCACATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCACATA
22965017 ACCTTAGTAT
Statistics
Matches: 152, Mismatches: 33, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
142 28 0.18
143 124 0.82
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (143 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCACATATCAAGGCCGAAGCCATGTCCCA
AACATAGTCTTACACTAGCTCACAATCAAGGCCAATACCATGTCCCAAACATGGTCTTACACTAG
CTCACATATCAAA
Found at i:22980650 original size:93 final size:93
Alignment explanation
Indices: 22980543--22980713 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
22980533 GCCCCTAAGT
* *
22980543 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
22980608 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
22980636 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
22980701 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22980714 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22980710 original size:46 final size:46
Alignment explanation
Indices: 22980538--22980710 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
22980528 AACCCGCCCC
* * *
22980538 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
22980584 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
22980632 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
22980677 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22980711 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:22988226 original size:92 final size:93
Alignment explanation
Indices: 22988099--22988268 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
22988089 GCCCCTAAGT
* *
22988099 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
22988164 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
22988192 GAACTC-GAGTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
22988256 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22988269 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 66 0.92
93 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22988265 original size:46 final size:46
Alignment explanation
Indices: 22988094--22988265 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
22988084 AACCCGCCCC
* * *
22988094 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
22988140 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
22988188 TCA-CGAACTC-GAGTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
22988232 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
22988266 TGCTCAACCA
Statistics
Matches: 102, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 6 0.06
46 73 0.72
47 6 0.06
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:22989937 original size:143 final size:143
Alignment explanation
Indices: 22989706--22989974 Score: 414
Period size: 143 Copynumber: 1.9 Consensus size: 143
22989696 ATGTTGGGCG
* * * *
22989706 CAAATATCATTGGTTTATCCAACTATAGTTGGGCTCACTAAATTATTCGTCGGTTTATCTGACTA
1 CAAATATCATTGGTTTATCCAACTAGAGCTGGGCTCACTAAATTATTCGTCAGTTTATCCGACTA
* * *
22989771 GCATTGGGTGCAACTTTCGTCAGTTTATCTGACTAGTGCTGGGCACACATTCGTCGATTTATTTG
66 GCACTGGGTGCAACCTCCGTCAGTTTATCTGACT-GTGCTGGGCACACATTCGTCGATTTATTTG
22989836 ATTAGAGCTTGGCA
130 ATTAGAGCTTGGCA
* * *
22989850 CAAATATCGTTGGTTTATCCAACTAGAGCTGGGTTTACT-AATTATTCGTCAGTTTATCCGACTA
1 CAAATATCATTGGTTTATCCAACTAGAGCTGGGCTCACTAAATTATTCGTCAGTTTATCCGACTA
* *
22989914 GCACTGGGTGCAACCTCCGTCAGTTTATCTGACTGTGCTGGGCACACATTTGTCGGTTTAT
66 GCACTGGGTGCAACCTCCGTCAGTTTATCTGACTGTGCTGGGCACACATTCGTCGATTTAT
22989975 CCGACTAGCG
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
142 25 0.22
143 54 0.48
144 34 0.30
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (143 bp):
CAAATATCATTGGTTTATCCAACTAGAGCTGGGCTCACTAAATTATTCGTCAGTTTATCCGACTA
GCACTGGGTGCAACCTCCGTCAGTTTATCTGACTGTGCTGGGCACACATTCGTCGATTTATTTGA
TTAGAGCTTGGCA
Found at i:22995262 original size:22 final size:22
Alignment explanation
Indices: 22995236--22995286 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
22995226 ATAATAAAAT
*
22995236 CCTAATTCAATTAACCATAAAC
1 CCTAATTCAATAAACCATAAAC
*
22995258 CCTAATTTAATAAACCATAAAC
1 CCTAATTCAATAAACCATAAAC
22995280 CCTAATT
1 CCTAATT
22995287 AAACAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.29
Consensus pattern (22 bp):
CCTAATTCAATAAACCATAAAC
Found at i:23000907 original size:15 final size:15
Alignment explanation
Indices: 23000887--23000916 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23000877 GAAAAGAAAG
23000887 GATATTAGGTATGTT
1 GATATTAGGTATGTT
23000902 GATATTAGGTATGTT
1 GATATTAGGTATGTT
23000917 TATTTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (15 bp):
GATATTAGGTATGTT
Found at i:23001338 original size:30 final size:29
Alignment explanation
Indices: 23001289--23001345 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
23001279 TTATTTTAAC
*
23001289 ATTTCTTCCAAAATTCTTAAAGTTCTCAA
1 ATTTCTTCCAAAATTCTTAAAGCTCTCAA
* *
23001318 ATTTCTCTCTAAATTTCTTAAAGCTCTC
1 ATTTCT-TCCAAAATTCTTAAAGCTCTC
23001346 TTTAAATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 6 0.25
30 18 0.75
ACGTcount: A:0.30, C:0.23, G:0.04, T:0.44
Consensus pattern (29 bp):
ATTTCTTCCAAAATTCTTAAAGCTCTCAA
Found at i:23003122 original size:18 final size:18
Alignment explanation
Indices: 23003099--23003136 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
23003089 TACCAAGTGC
* *
23003099 GTATCCTAGCCGTTATAT
1 GTATCCTAACCCTTATAT
23003117 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
23003135 GT
1 GT
23003137 TTTCTTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:23006919 original size:13 final size:13
Alignment explanation
Indices: 23006901--23006928 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23006891 TTGCCAAAGG
23006901 GACACGCCCGTGT
1 GACACGCCCGTGT
23006914 GACACGCCCGTGT
1 GACACGCCCGTGT
23006927 GA
1 GA
23006929 GGAAGTCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Done.