Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 770 of 770
Found at i:244596538 original size:57 final size:56
Alignment explanation
Indices: 244596467--244596578 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
244596457 TGGTGACGAG
* * **
244596467 ATTGGCACTAAGTGTGCGTGCTGGAAATATATG-GCACTAAGTGTGCGTGCTGGAAAT
1 ATTGGCACTAAGTGT--GTGCTGGAAAAATATGAACACTAAGTGTGCAAGCTGGAAAT
*
244596524 ATTGGCACTAAGTGTGTGCTGGAAAAATATGAACACTATGTGTGCAAGCTGGAAA
1 ATTGGCACTAAGTGTGTGCTGGAAAAATATGAACACTAAGTGTGCAAGCTGGAAA
244596579 AATACGGCAC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 15 0.31
56 19 0.39
57 15 0.31
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.27
Consensus pattern (56 bp):
ATTGGCACTAAGTGTGTGCTGGAAAAATATGAACACTAAGTGTGCAAGCTGGAAAT
Found at i:244599019 original size:41 final size:41
Alignment explanation
Indices: 244598974--244599091 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
244598964 TGAAAGATAA
244598974 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
244599015 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244599045 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244599086 ATGTAG
1 ATGTAG
244599092 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:244599030 original size:71 final size:71
Alignment explanation
Indices: 244598942--244599105 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
244598932 GAGATGTATC
244598942 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244599007 AGGACA
66 AGGACA
244599013 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244599078 AGGACA
66 AGGACA
244599084 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
244599106 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:244606069 original size:23 final size:23
Alignment explanation
Indices: 244606022--244606107 Score: 154
Period size: 23 Copynumber: 3.7 Consensus size: 23
244606012 NNNNNNNNNN
244606022 GGGCATAAGCCCTTTTGATAACTG
1 GGGCATAAGCCCTTTT-ATAACTG
244606046 GGGCATAAGCCCTTTTATAACTG
1 GGGCATAAGCCCTTTTATAACTG
*
244606069 GGGCATAAGCCCTTTAATAACTG
1 GGGCATAAGCCCTTTTATAACTG
244606092 GGGCATAAGCCCTTTT
1 GGGCATAAGCCCTTTT
244606108 TCACTTCTCC
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
23 44 0.73
24 16 0.27
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (23 bp):
GGGCATAAGCCCTTTTATAACTG
Found at i:244606177 original size:20 final size:20
Alignment explanation
Indices: 244606152--244606218 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
244606142 TTATGATTAC
244606152 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
244606172 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
244606192 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
244606212 ACCATGT
1 ATCATGT
244606219 TTATCAAATC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:244606183 original size:11 final size:11
Alignment explanation
Indices: 244606152--244606207 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
244606142 TTATGATTAC
244606152 ATCATGTGCAT
1 ATCATGTGCAT
*
244606163 ATCA--TACAT
1 ATCATGTGCAT
244606172 ATCATGTGCAT
1 ATCATGTGCAT
*
244606183 ATCA--TACAT
1 ATCATGTGCAT
*
244606192 GTCATGTGCAT
1 ATCATGTGCAT
244606203 ATCAT
1 ATCAT
244606208 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:244606285 original size:25 final size:25
Alignment explanation
Indices: 244606253--244606300 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
244606243 ATACATAAAC
* * *
244606253 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
244606278 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
244606301 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:244614056 original size:23 final size:23
Alignment explanation
Indices: 244614023--244614112 Score: 112
Period size: 23 Copynumber: 3.9 Consensus size: 23
244614013 CCTGCTCTTG
*
244614023 ATCAGCTCCTAAATCTTCT-CCTT
1 ATCA-CTCCTAAATCCTCTCCCTT
* *
244614046 ATTATCACCTAAATCCTCTCCCTT
1 ATCA-CTCCTAAATCCTCTCCCTT
244614070 ATCACTCCTAAATCCTCTCCCTT
1 ATCACTCCTAAATCCTCTCCCTT
244614093 ATCAGCTCCTAAAT-CTCTCC
1 ATCA-CTCCTAAATCCTCTCC
244614113 TGACAGCCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
23 43 0.73
24 16 0.27
ACGTcount: A:0.23, C:0.39, G:0.02, T:0.36
Consensus pattern (23 bp):
ATCACTCCTAAATCCTCTCCCTT
Found at i:244622328 original size:40 final size:40
Alignment explanation
Indices: 244622190--244622393 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
244622180 CAATTGAATG
* * * * *
244622190 ATATCCGGGC-AAGTCCCGAAGACATT-TTGCTAGT-ATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * **
244622227 ATATCCGGGTTAAGACCCGAAGGCCATT-TTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
244622267 ACATCC-GGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
244622306 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
244622346 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
244622386 ATATCCGG
1 ATATCCGG
244622394 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
37 9 0.07
38 14 0.10
39 38 0.28
40 77 0.56
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:244625217 original size:31 final size:32
Alignment explanation
Indices: 244625179--244625243 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
244625169 ATGATTGCTT
244625179 TGATTGA-CCTGGTTCTACTCATTCTTATATA
1 TGATTGACCCTGGTTCTACTCATTCTTATATA
244625210 TGATTGACCCTGGTTCTACTCATTCTTATATA
1 TGATTGACCCTGGTTCTACTCATTCTTATATA
244625242 TG
1 TG
244625244 TGAAACCTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 7 0.21
32 26 0.79
ACGTcount: A:0.22, C:0.20, G:0.14, T:0.45
Consensus pattern (32 bp):
TGATTGACCCTGGTTCTACTCATTCTTATATA
Found at i:244629778 original size:39 final size:40
Alignment explanation
Indices: 244629724--244629826 Score: 181
Period size: 40 Copynumber: 2.6 Consensus size: 40
244629714 TTGGCTCAGA
* *
244629724 TATAACAACCAGCACGAATGCCTTC-GGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
244629763 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
1 TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
244629803 TATAATAACCCGCACGAATGCCTT
1 TATAATAACCCGCACGAATGCCTT
244629827 GCACATATAT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
39 23 0.38
40 38 0.62
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (40 bp):
TATAATAACCCGCACGAATGCCTTCAGGACTTAACCCGGT
Found at i:244630404 original size:2 final size:2
Alignment explanation
Indices: 244630397--244630433 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
244630387 CGAATTTAAC
244630397 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
244630434 CTAAATGTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:244640061 original size:39 final size:39
Alignment explanation
Indices: 244640007--244640169 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
244639997 TGTGTATGAA
244640007 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
244640046 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
244640085 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
244640124 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
244640164 TGTGCG
1 TGTGCG
244640170 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:244640185 original size:40 final size:39
Alignment explanation
Indices: 244640007--244640199 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
244639997 TGTGTATGAA
* *
244640007 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
244640046 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
244640085 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
244640124 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
244640164 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
244640200 TGTTTGAACG
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:244646321 original size:40 final size:40
Alignment explanation
Indices: 244646276--244646440 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
244646266 CGGAATACAA
244646276 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
244646316 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
244646356 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTA-A
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
* * * *
244646395 CCGGATATAATTC-C-AGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CCACTAGCACGAATGCCTTCGGGTCTTAGC
244646433 CCGGATAT
1 CCGGATAT
244646441 CATTCAATTG
Statistics
Matches: 104, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
37 13 0.12
38 14 0.13
39 12 0.12
40 65 0.62
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:244649728 original size:34 final size:34
Alignment explanation
Indices: 244649681--244649745 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
244649671 ATTACTGCAC
* *
244649681 TGATACTGTTACTGTAATAGGCTAAGGCCCACAT
1 TGATACTGATACTGTAACAGGCTAAGGCCCACAT
* *
244649715 TGATACTGATACTGTAACGGGCTGAGGCCCA
1 TGATACTGATACTGTAACAGGCTAAGGCCCA
244649746 AACTGCATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (34 bp):
TGATACTGATACTGTAACAGGCTAAGGCCCACAT
Found at i:244651374 original size:30 final size:29
Alignment explanation
Indices: 244651280--244651381 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
244651270 TATAGTGAAT
* * *
244651280 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
244651309 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
244651337 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
244651367 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
244651382 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:244658890 original size:13 final size:13
Alignment explanation
Indices: 244658872--244658898 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
244658862 CTTTAACATC
244658872 TAAGGCACATGCA
1 TAAGGCACATGCA
244658885 TAAGGCACATGCA
1 TAAGGCACATGCA
244658898 T
1 T
244658899 GCTCATTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (13 bp):
TAAGGCACATGCA
Found at i:244659311 original size:26 final size:25
Alignment explanation
Indices: 244659275--244659427 Score: 219
Period size: 26 Copynumber: 6.2 Consensus size: 25
244659265 CATGAAATTC
*
244659275 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
*
244659301 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCTA
244659327 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCTA
244659353 TTATCATGAACATTTA-CT-ACCTA
1 TTATCATGAACATTTACCTAACCTA
244659376 TTATC--GAACATTTACCTAA-CTA
1 TTATCATGAACATTTACCTAACCTA
244659398 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCTA
244659423 -TATCA
1 TTATCA
244659428 ATTTGTATAA
Statistics
Matches: 120, Mismatches: 1, Indels: 14
0.89 0.01 0.10
Matches are distributed among these distances:
21 9 0.08
22 10 0.08
23 11 0.09
24 21 0.17
25 12 0.10
26 56 0.47
27 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCTA
Found at i:244664904 original size:40 final size:40
Alignment explanation
Indices: 244664838--244664981 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
244664828 AAATTGAATG
* * *
244664838 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
244664877 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
244664917 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
*
244664957 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
244664982 TTCGTGCACG
Statistics
Matches: 85, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.19
40 69 0.81
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:244665002 original size:40 final size:40
Alignment explanation
Indices: 244664875--244665004 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
244664865 ATGCTGGAAA
* *
244664875 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
244664915 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
244664955 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
244664995 TTATATCCGG
1 TTATATCCGG
244665005 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:244671042 original size:79 final size:81
Alignment explanation
Indices: 244670941--244671125 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
244670931 ACGACTCGCT
** * *
244670941 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
244671004 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
244671021 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
244671085 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
244671101 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
244671126 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:244671125 original size:40 final size:39
Alignment explanation
Indices: 244670934--244671125 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
244670924 GGATATAACG
* ** * *
244670934 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
244670974 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
244671014 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
244671053 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
244671093 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
244671126 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:244679755 original size:14 final size:14
Alignment explanation
Indices: 244679736--244679764 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
244679726 TATTTTATGG
244679736 CATGTATAGCTAGA
1 CATGTATAGCTAGA
244679750 CATGTATAGCTAGA
1 CATGTATAGCTAGA
244679764 C
1 C
244679765 TTTTACACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (14 bp):
CATGTATAGCTAGA
Found at i:244681187 original size:71 final size:71
Alignment explanation
Indices: 244681101--244681255 Score: 303
Period size: 71 Copynumber: 2.2 Consensus size: 71
244681091 CGATTTGTCT
244681101 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
244681166 CTTTCA
66 CTTTCA
244681172 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
244681237 CTTTCA
66 CTTTCA
244681243 CGTAGCTCT-TTGT
1 CGTAGCTCTCTTGT
244681256 ACACATGATG
Statistics
Matches: 84, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 4 0.05
71 80 0.95
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:244684876 original size:40 final size:40
Alignment explanation
Indices: 244684832--244685023 Score: 239
Period size: 39 Copynumber: 4.9 Consensus size: 40
244684822 GTTCAAAACA
* * ** * *
244684832 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
244684872 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
*
244684912 CCTTCGGG-CTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
244684951 CCTTC-GG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
244684989 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
244685024 TTCATTCACA
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.26
39 62 0.45
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:244684969 original size:38 final size:39
Alignment explanation
Indices: 244684862--244685023 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
244684852 TATGGTAACC
* *
244684862 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
244684902 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
244684941 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
244684979 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
244685018 CGCACA
1 CGCACA
244685024 TTCATTCACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:244684987 original size:77 final size:79
Alignment explanation
Indices: 244684862--244685012 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
244684852 TATGGTAACC
244684862 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
244684927 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
244684941 CGCACAATTGCCTTC-GG-CTTAGCCCGGATATCACAATTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
244685004 CGGATATCA
66 CGGATATCA
244685013 CAATTCGCAC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 53 0.77
78 2 0.03
79 14 0.20
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:244691824 original size:40 final size:39
Alignment explanation
Indices: 244691787--244691966 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 39
244691777 GCTACTCGTT
*
244691787 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
*
244691827 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* * *
244691867 CAAATGCCTTCGGG-CTTAGTCTGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * *
244691905 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
244691946 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
244691967 GGACATCATT
Statistics
Matches: 122, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
37 2 0.02
38 24 0.20
39 16 0.13
40 67 0.55
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:244691917 original size:78 final size:81
Alignment explanation
Indices: 244691787--244691966 Score: 235
Period size: 78 Copynumber: 2.3 Consensus size: 81
244691777 GCTACTCGTT
* *
244691787 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
244691851 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * **
244691867 CAAATGCCTTCGGG-CTTAGTCTGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
244691930 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
244691946 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
244691967 GGACATCATT
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 48 0.55
79 22 0.25
80 14 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:244694848 original size:32 final size:33
Alignment explanation
Indices: 244694785--244694850 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
244694775 AACCTAAATC
244694785 GCATCCTTCTTACTTGCTGATACTGGCAACCCA
1 GCATCCTTCTTACTTGCTGATACTGGCAACCCA
244694818 GCATCCTTCTTACTTGCTGAT-CTGGCAACCCA
1 GCATCCTTCTTACTTGCTGATACTGGCAACCCA
244694850 G
1 G
244694851 ATACGAAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 12 0.36
33 21 0.64
ACGTcount: A:0.20, C:0.33, G:0.17, T:0.30
Consensus pattern (33 bp):
GCATCCTTCTTACTTGCTGATACTGGCAACCCA
Found at i:244698772 original size:40 final size:39
Alignment explanation
Indices: 244698607--244698790 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
244698597 AAATTGAATG
* * *
244698607 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
244698647 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
244698687 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
244698727 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
244698766 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
244698791 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:244698815 original size:80 final size:81
Alignment explanation
Indices: 244698647--244698835 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
244698637 GCTGGAAATT
* * * *
244698647 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
244698712 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
244698728 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
244698791 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
244698807 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
244698836 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:244704411 original size:41 final size:41
Alignment explanation
Indices: 244704366--244704483 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
244704356 TGAAAGATAA
244704366 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
244704407 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244704437 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244704478 ATGTAG
1 ATGTAG
244704484 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:244704422 original size:71 final size:71
Alignment explanation
Indices: 244704334--244704497 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
244704324 GAGATGTATC
244704334 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244704399 AGGACA
66 AGGACA
244704405 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244704470 AGGACA
66 AGGACA
244704476 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
244704498 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:244718530 original size:39 final size:40
Alignment explanation
Indices: 244718352--244718534 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
244718342 CCGCACCAAG
* * * * * * * *
244718352 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
244718392 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
244718432 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
244718472 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
244718511 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
244718535 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:244724169 original size:39 final size:39
Alignment explanation
Indices: 244724089--244724299 Score: 274
Period size: 39 Copynumber: 5.5 Consensus size: 39
244724079 CGGATGATAA
* *
244724089 CCGGGCTAAGCCCG-AGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA-T
244724127 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
244724166 CCGGGCTAAGTCCCGAAGGCA--TGTGCGAGTTACTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
* *
244724204 CCGGGCTAAGTCCGAAGGCATTTGTGCGAG-TACTATAA
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
*
244724242 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
244724282 CC-GGCTAAATCCCGAAGG
1 CCGGGCT-AAGCCCGAAGG
244724300 TACTTGGTTG
Statistics
Matches: 157, Mismatches: 8, Indels: 15
0.87 0.04 0.08
Matches are distributed among these distances:
37 9 0.06
38 58 0.37
39 70 0.45
40 20 0.13
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:244724219 original size:77 final size:77
Alignment explanation
Indices: 244724085--244724299 Score: 280
Period size: 77 Copynumber: 2.8 Consensus size: 77
244724075 TATTCGGATG
* * *
244724085 ATAACCGGGCTAAG-CCCG-AGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATA-TCCGGGCTAAGTCCGAAGGCA
244724147 TTTGTGCGAGTTACT
64 TTTGTGCGAG-TACT
*
244724162 ATATCCGGGCTAAGTCCCGAAGGCA-TGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATT
244724226 TGTGCGAGTACT
66 TGTGCGAGTACT
* *
244724238 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTA-CTATATCCGGGCTAAGT-CCGAAGG
244724300 TACTTGGTTG
Statistics
Matches: 124, Mismatches: 7, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
76 28 0.23
77 64 0.52
78 27 0.22
79 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (77 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATT
TGTGCGAGTACT
Found at i:244731640 original size:12 final size:12
Alignment explanation
Indices: 244731620--244731655 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
244731610 TGGGATATGC
*
244731620 AATGTATGAATG
1 AATGCATGAATG
244731632 AATGCATGAATG
1 AATGCATGAATG
244731644 AATGCATGAATG
1 AATGCATGAATG
244731656 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:244733682 original size:35 final size:35
Alignment explanation
Indices: 244733618--244733685 Score: 86
Period size: 35 Copynumber: 1.9 Consensus size: 35
244733608 ACACAATATG
* *
244733618 GTATTTAAAATATATATATATATGTATATATAATA
1 GTATTTAAAATATATACATATATGAATATATAATA
244733653 GTATTTAAGAATATATACATA-A-GAAATATATAA
1 GTATTTAA-AATATATACATATATG-AATATATAA
244733686 CTAATGGCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 1 0.03
35 17 0.59
36 11 0.38
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.40
Consensus pattern (35 bp):
GTATTTAAAATATATACATATATGAATATATAATA
Found at i:244734247 original size:16 final size:16
Alignment explanation
Indices: 244734228--244734312 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
244734218 TTCTTCTTTT
244734228 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
244734244 TTTTTTTTGGG-TAGG
1 TTTTTTTTGGGTTAGG
*
244734259 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
** * *
244734271 TTTTTTTT-TCTTTGT
1 TTTTTTTTGGGTTAGG
244734286 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
244734302 TTTTTTTTGGG
1 TTTTTTTTGGG
244734313 GGGCTTAATG
Statistics
Matches: 56, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
13 2 0.04
14 1 0.02
15 17 0.30
16 28 0.50
ACGTcount: A:0.04, C:0.04, G:0.22, T:0.71
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:244735828 original size:28 final size:29
Alignment explanation
Indices: 244735796--244735894 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
244735786 ATAATAAGCC
*
244735796 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
244735824 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
244735852 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
244735881 CGCACACTTAGTGC
1 CGCACACTTAGTGC
244735895 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:244749638 original size:28 final size:28
Alignment explanation
Indices: 244749569--244749669 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
244749559 GACAAGATTG
* * * *
244749569 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
244749599 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
244749627 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
244749656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
244749670 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:244754716 original size:11 final size:11
Alignment explanation
Indices: 244754696--244754731 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
244754686 AGCAAACGTG
244754696 AAAG-AAGAAA
1 AAAGAAAGAAA
*
244754706 GAAGAAAGAAA
1 AAAGAAAGAAA
244754717 AAAGAAAGAAA
1 AAAGAAAGAAA
244754728 AAAG
1 AAAG
244754732 GGAAATTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 3 0.13
11 20 0.87
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:244754721 original size:18 final size:18
Alignment explanation
Indices: 244754695--244754731 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
244754685 GAGCAAACGT
* *
244754695 GAAAGAAGAAAGAAGAAA
1 GAAAAAAGAAAGAAAAAA
244754713 GAAAAAAGAAAGAAAAAA
1 GAAAAAAGAAAGAAAAAA
244754731 G
1 G
244754732 GGAAATTTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (18 bp):
GAAAAAAGAAAGAAAAAA
Found at i:244763485 original size:28 final size:28
Alignment explanation
Indices: 244763445--244763505 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
244763435 TCCCAATGGC
*
244763445 TAATCTTTCCAAACATTTCCATACCTCT
1 TAATGTTTCCAAACATTTCCATACCTCT
244763473 TAATGTTTCCAAACATTTCCATACCTCT
1 TAATGTTTCCAAACATTTCCATACCTCT
244763501 TAATG
1 TAATG
244763506 ATCAACATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.28, G:0.03, T:0.39
Consensus pattern (28 bp):
TAATGTTTCCAAACATTTCCATACCTCT
Found at i:244764252 original size:39 final size:38
Alignment explanation
Indices: 244764096--244764275 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 38
244764086 TACTCGTTCA
* *
244764096 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCAC
*
244764135 AAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCAC
244764175 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGG-ATTAGTAACTCGCAC
* * *
244764213 AATGCCTTC-GGATCTTAGTCCGGATTAGTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGATTAGTAAC-TCGCAC
*
244764252 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
244764276 CATCATTCGA
Statistics
Matches: 125, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
37 2 0.02
38 40 0.32
39 45 0.36
40 37 0.30
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCAC
Found at i:244767875 original size:41 final size:41
Alignment explanation
Indices: 244767830--244767947 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
244767820 TGAAAGATAA
244767830 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
244767871 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244767901 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
244767942 ATGTAG
1 ATGTAG
244767948 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:244767886 original size:71 final size:71
Alignment explanation
Indices: 244767798--244767961 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
244767788 GAGATGTATC
244767798 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244767863 AGGACA
66 AGGACA
244767869 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
244767934 AGGACA
66 AGGACA
244767940 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
244767962 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:244773196 original size:40 final size:39
Alignment explanation
Indices: 244773131--244773329 Score: 253
Period size: 40 Copynumber: 5.1 Consensus size: 39
244773121 CGGAATTTAG
* **
244773131 CCGGATATAACCACAAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTC-GGTCTTAAC
* * *
244773170 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTC-GGTCTTAAC
244773210 CCGGATATAACAACTCGCACAAATGCCTTCGGTCTTAAC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGTCTTAAC
244773249 CCGGATATAACAACTCGCACAAAATGCCTTCGGTCTTAAC
1 CCGGATATAACAACTCGCAC-AAATGCCTTCGGTCTTAAC
* * *
244773289 CC-GATATAATC-ACTAGCATAAATGCCTTCGG-CTTAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGTCTTAAC
244773326 CCGG
1 CCGG
244773330 GTATCATTCA
Statistics
Matches: 144, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
37 7 0.05
38 13 0.09
39 56 0.39
40 68 0.47
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGTCTTAAC
Found at i:244773248 original size:79 final size:78
Alignment explanation
Indices: 244773127--244773333 Score: 271
Period size: 79 Copynumber: 2.7 Consensus size: 78
244773117 TCTTCGGAAT
* *
244773127 TTAG-CCGGATATAACCACAAGCAC-AATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTC-GGTCTTAACCCGGGTATAACAACTCGCAC
244773190 -AAATGCCTTCGGGTC
64 AAAATGCCTTC-GGTC
* *
244773205 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGTCTTAACCCGGATATAACAACTCGCACA
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGTCTTAACCCGGGTATAACAACTCGCACA
244773270 AAATGCCTTCGGTC
65 AAATGCCTTCGGTC
* * *
244773284 TTAACCC-GATATAATCACTAGCATAAATGCCTTCGG-CTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGTCTTAACCCGGGTAT
244773334 CATTCAATTG
Statistics
Matches: 115, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
77 12 0.10
78 30 0.26
79 54 0.47
80 19 0.17
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGTCTTAACCCGGGTATAACAACTCGCACAA
AATGCCTTCGGTC
Found at i:244779907 original size:27 final size:28
Alignment explanation
Indices: 244779877--244779977 Score: 114
Period size: 27 Copynumber: 3.5 Consensus size: 28
244779867 ATAGTGAGTC
244779877 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
244779904 CGCACACCTAGTGCTATATAATCAAAACT
1 CGCACACTTAGTGCTATAAAATC-AAACT
* * *
244779933 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
244779964 CGCACACTTAGTGC
1 CGCACACTTAGTGC
244779978 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
27 21 0.34
29 20 0.32
30 2 0.03
31 18 0.29
32 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:244780829 original size:7 final size:7
Alignment explanation
Indices: 244780819--244780843 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
244780809 TCATCACCAC
244780819 AACATCA
1 AACATCA
244780826 AACATCA
1 AACATCA
244780833 AACATCA
1 AACATCA
244780840 AACA
1 AACA
244780844 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:244781112 original size:19 final size:19
Alignment explanation
Indices: 244781072--244781113 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
244781062 ACACTTTTTT
244781072 TTTCCTTTGTTTTCATCATA
1 TTTCCTTTGTTTTCAT-ATA
*
244781092 TTTCCTTTTTTTTTCAT-TA
1 TTTCC-TTTGTTTTCATATA
244781111 TTT
1 TTT
244781114 TATTCTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.25
20 5 0.25
21 10 0.50
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTCCTTTGTTTTCATATA
Found at i:244786448 original size:19 final size:20
Alignment explanation
Indices: 244786411--244786451 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
244786401 ACGTTTGCTT
* *
244786411 AAAATATTTATTTTCTTGGA
1 AAAACATTTACTTTCTTGGA
244786431 AAAACATTTACTTT-TTGGA
1 AAAACATTTACTTTCTTGGA
244786450 AA
1 AA
244786452 CTTTGCGCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (20 bp):
AAAACATTTACTTTCTTGGA
Found at i:244793688 original size:28 final size:28
Alignment explanation
Indices: 244793619--244793719 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
244793609 ACAAAGATTG
* * * *
244793619 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
244793649 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
244793677 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
244793706 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
244793720 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:244793713 original size:29 final size:28
Alignment explanation
Indices: 244793648--244793719 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
244793638 AAAATTGTAC
*
244793648 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
244793676 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
244793705 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
244793720 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:244797235 original size:40 final size:40
Alignment explanation
Indices: 244797190--244797356 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
244797180 CGGAATATAA
244797190 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
244797230 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
244797270 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
244797310 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
244797349 CCGGATAT
1 CCGGATAT
244797357 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:244802275 original size:2 final size:2
Alignment explanation
Indices: 244802263--244802292 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
244802253 ATCGGGTATG
244802263 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
244802293 AGTATGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:244802709 original size:23 final size:24
Alignment explanation
Indices: 244802665--244802748 Score: 75
Period size: 23 Copynumber: 3.6 Consensus size: 24
244802655 AATTGACAAA
244802665 GGCACAATGTGTGCAAAGACTATG
1 GGCACAATGTGTGCAAAGACTATG
**
244802689 TGGCAC-ATGTG-GCAACTACTATG
1 -GGCACAATGTGTGCAAAGACTATG
* * **
244802712 GGCACTATGTGTGCGATCACTAT-
1 GGCACAATGTGTGCAAAGACTATG
*
244802735 GGCACTATGTGTGC
1 GGCACAATGTGTGC
244802749 GAGGCTACTA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
22 5 0.10
23 29 0.56
24 13 0.25
25 5 0.10
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (24 bp):
GGCACAATGTGTGCAAAGACTATG
Found at i:244802734 original size:47 final size:46
Alignment explanation
Indices: 244802689--244802916 Score: 203
Period size: 49 Copynumber: 4.8 Consensus size: 46
244802679 AAAGACTATG
244802689 TGGCAC-ATGTG-GCAACTACTATGGGCACTATGTGTGCGATCACTA
1 TGGCACTATGTGTGCAACTACTAT-GGCACTATGTGTGCGATCACTA
*
244802734 TGGCACTATGTGTGCGAGGCTACTATGGCACTATGTGTGCGATTCACTA
1 TGGCACTATGTGTGC-A-ACTACTATGGCACTATGTGTGCGA-TCACTA
* * *
244802783 TGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATTTACTA
1 TGGCACTATGTGTGCAACTACTATGGCACTATGTGTGCGA-TCACTA
* ** * * **
244802830 T-GCACTAAGTGTGCGATTTACTATAGCACTACGTGGTGCGATTTGCTA
1 TGGCACTATGTGTGC-AACTACTATGGCACTATGT-GTGCGA-TCACTA
* * * *
244802878 TAGCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 TGGCACTATGTGTGC-AAC-TACTATGGCACTATGTGTGC
244802917 CACATTCGGT
Statistics
Matches: 157, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
45 6 0.04
46 17 0.11
47 46 0.29
48 34 0.22
49 50 0.32
50 4 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (46 bp):
TGGCACTATGTGTGCAACTACTATGGCACTATGTGTGCGATCACTA
Found at i:244802749 original size:23 final size:24
Alignment explanation
Indices: 244802706--244802894 Score: 231
Period size: 23 Copynumber: 7.9 Consensus size: 24
244802696 TGTGGCAACT
244802706 ACTATGGGCACTATGTGTGCGA-TC
1 ACTAT-GGCACTATGTGTGCGATTC
**
244802730 ACTATGGCACTATGTGTGCGAGGC
1 ACTATGGCACTATGTGTGCGATTC
244802754 TACTATGGCACTATGTGTGCGATTC
1 -ACTATGGCACTATGTGTGCGATTC
244802779 ACTATGGCACTATGTGTGCGATT-
1 ACTATGGCACTATGTGTGCGATTC
*
244802802 ACTATGGCACTATGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTC
* *
244802826 ACTAT-GCACTAAGTGTGCGATTT
1 ACTATGGCACTATGTGTGCGATTC
* * *
244802849 ACTATAGCACTACGTGGTGCGATTT
1 ACTATGGCACTATGT-GTGCGATTC
* * *
244802874 GCTATAGCTCTATGTGTGCGA
1 ACTATGGCACTATGTGTGCGA
244802895 ACATAATAAG
Statistics
Matches: 152, Mismatches: 8, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
23 61 0.40
24 48 0.32
25 43 0.28
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (24 bp):
ACTATGGCACTATGTGTGCGATTC
Found at i:244802796 original size:72 final size:70
Alignment explanation
Indices: 244802706--244802894 Score: 243
Period size: 72 Copynumber: 2.6 Consensus size: 70
244802696 TGTGGCAACT
* *
244802706 ACTATGGGCACTATGTGTGCGATCACTATGGCACTATGTGTGCGAGGCTACTATGGCACTATGTG
1 ACTAT-GGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGA-GCTACTAT-GCACTAAGTG
244802771 TGCGATTC
63 TGCGATTC
**
244802779 ACTATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGATTTACTATGCACTAAGTGTGC
1 ACTATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGAGCTACTATGCACTAAGTGTGC
*
244802844 GATTT
66 GATTC
* * * * *
244802849 ACTATAGCACTACGTGGTGCGATTTGCTATAGCTCTATGTGTGCGA
1 ACTATGGCACTATGT-GTGCGA-TTACTATGGCACTATGTGTGCGA
244802895 ACATAATAAG
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
70 29 0.28
71 12 0.12
72 58 0.56
73 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (70 bp):
ACTATGGCACTATGTGTGCGATTACTATGGCACTATGTGTGCGAGCTACTATGCACTAAGTGTGC
GATTC
Found at i:244802835 original size:95 final size:96
Alignment explanation
Indices: 244802689--244802894 Score: 251
Period size: 95 Copynumber: 2.2 Consensus size: 96
244802679 AAAGACTATG
* *
244802689 TGGCAC-ATGTG-GCAACTACTATGGGCACTATGTGTGCGATCACTATGGCACTATGTGTGCGAG
1 TGGCACTATGTGTGCGACTACTATGGGCACTATGTGTGCGATCACTATGGCACTAAGTGTGCGA-
* *
244802752 GCTACTATGGCACTATGT-GTGCGATTCACTA
65 GCTACTATAGCACTACGTGGTGCGATTCACTA
* *
244802783 TGGCACTATGTGTGCGATTACTAT-GGCACTATGTGTGCGATTTACTAT-GCACTAAGTGTGCGA
1 TGGCACTATGTGTGCGACTACTATGGGCACTATGTGTGCGA-TCACTATGGCACTAAGTGTGCGA
** **
244802846 TTTACTATAGCACTACGTGGTGCGATTTGCTA
65 GCTACTATAGCACTACGTGGTGCGATTCACTA
* *
244802878 TAGCTCTATGTGTGCGA
1 TGGCACTATGTGTGCGA
244802895 ACATAATAAG
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
94 20 0.21
95 61 0.64
96 15 0.16
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (96 bp):
TGGCACTATGTGTGCGACTACTATGGGCACTATGTGTGCGATCACTATGGCACTAAGTGTGCGAG
CTACTATAGCACTACGTGGTGCGATTCACTA
Found at i:244808494 original size:76 final size:75
Alignment explanation
Indices: 244808382--244808533 Score: 270
Period size: 76 Copynumber: 2.0 Consensus size: 75
244808372 CCCGCACAAA
244808382 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
244808447 ATACTCGCACAT
66 --ACTCGCACAT
*
244808459 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
244808523 ACTCGCACAT
66 ACTCGCACAT
244808533 T
1 T
244808534 CATACACATC
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 11 0.15
76 53 0.72
77 10 0.14
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (75 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATC
ACTCGCACAT
Found at i:244808511 original size:39 final size:39
Alignment explanation
Indices: 244808374--244808524 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
244808364 TATGGTAACC
* *
244808374 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
244808414 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA-TACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
244808452 CGCAC-ATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
244808490 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
244808525 TCGCACATTC
Statistics
Matches: 105, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
37 28 0.27
38 16 0.15
39 44 0.42
40 17 0.16
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:244818254 original size:26 final size:25
Alignment explanation
Indices: 244818217--244818337 Score: 199
Period size: 25 Copynumber: 4.8 Consensus size: 25
244818207 TGATACAAAT
244818217 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
244818243 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAAT-GGTTAGGTAAATGTTCCA
244818268 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
*
244818294 TGATAATGGTTAGGTAAATGTTTCA
1 TGATAATGGTTAGGTAAATGTTCCA
244818319 TGATAATGGTTAGGTAAAT
1 TGATAATGGTTAGGTAAAT
244818338 TCATGATAAG
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
25 60 0.66
26 31 0.34
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:244818272 original size:51 final size:51
Alignment explanation
Indices: 244818217--244818337 Score: 219
Period size: 51 Copynumber: 2.4 Consensus size: 51
244818207 TGATACAAAT
244818217 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTTCA
244818268 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
244818319 TGATAAT-GGTTAGGTAAAT
1 TGATAATAGGTTAGGTAAAT
244818338 TCATGATAAG
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
50 25 0.36
51 44 0.64
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGTTAGGTAAATGTTTCA
Found at i:244830441 original size:24 final size:24
Alignment explanation
Indices: 244830414--244830648 Score: 378
Period size: 24 Copynumber: 10.1 Consensus size: 24
244830404 CAATGTGACT
*
244830414 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
244830438 ATAGTAAATCGCA-ACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
244830461 ATAGT-AATCGCACACATAGTG-C
1 ATAGTAAATCGCACACATAGTGCC
244830483 ATAGT-AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
244830506 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
244830530 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
244830554 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
244830578 ATAGT-AATCGCACACATAGTG-C
1 ATAGTAAATCGCACACATAGTGCC
244830600 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
244830624 ATAG--AATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
244830646 ATA
1 ATA
244830649 TGGTCTTTGC
Statistics
Matches: 205, Mismatches: 1, Indels: 12
0.94 0.00 0.06
Matches are distributed among these distances:
22 56 0.27
23 61 0.30
24 88 0.43
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:244830473 original size:46 final size:47
Alignment explanation
Indices: 244830420--244830648 Score: 396
Period size: 46 Copynumber: 4.9 Consensus size: 47
244830410 GACTATAGCA
244830420 AATCGCACACATAGTGCCATAGTAAATCGCA-ACATAGTGCCATAGT-
1 AATCGCACACATAGTGCCATAGT-AATCGCACACATAGTGCCATAGTG
244830466 AATCGCACACATAGTG-CATAGTAATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTAATCGCACACATAGTGCCATAGTG
244830512 AATCGCACACATAGTGCCATAGTGAATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGT-AATCGCACACATAGTGCCATAGTG
*
244830560 AATCGCACACATAGTGCCATAGTAATCGCACACATAGTG-CATAGTA
1 AATCGCACACATAGTGCCATAGTAATCGCACACATAGTGCCATAGTG
244830606 AATCGCACACATAGTGCCATAG-AATCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATAGTAATCGCACACATAGTGCCATA
244830649 TGGTCTTTGC
Statistics
Matches: 177, Mismatches: 1, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
44 7 0.04
45 37 0.21
46 64 0.36
47 22 0.12
48 47 0.27
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (47 bp):
AATCGCACACATAGTGCCATAGTAATCGCACACATAGTGCCATAGTG
Found at i:244832447 original size:17 final size:17
Alignment explanation
Indices: 244832425--244832461 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
244832415 CTTCTCATAC
244832425 TCATATTAGCTTGAATT
1 TCATATTAGCTTGAATT
244832442 TCATATTAGCTTGAATT
1 TCATATTAGCTTGAATT
244832459 TCA
1 TCA
244832462 ATTTCTGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.46
Consensus pattern (17 bp):
TCATATTAGCTTGAATT
Found at i:244835471 original size:50 final size:50
Alignment explanation
Indices: 244835299--244835533 Score: 228
Period size: 50 Copynumber: 4.7 Consensus size: 50
244835289 GTGAATACAT
* * * *
244835299 GTGTGTAGTACTAAGTG-AGGCTACTACGTGTATCATACTG-TTAAGTCGC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCAC
* * * * ** *
244835348 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTTA-ATGACTTCGATCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGA-TGAGGTCAC
244835399 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCAC
* * * * *
244835449 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGTTGTTGA--TCAC
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCAC
* * * *
244835497 ATGTGTAGTACTAAGTGTAGGCTACTATGCGTATCAG
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAG
244835534 GTAGCTTCGG
Statistics
Matches: 156, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
48 36 0.23
49 18 0.12
50 61 0.39
51 41 0.26
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATGAGGTCAC
Found at i:244835473 original size:101 final size:97
Alignment explanation
Indices: 244835299--244835533 Score: 274
Period size: 101 Copynumber: 2.4 Consensus size: 97
244835289 GTGAATACAT
* * *
244835299 GTGTGTAGTACTAAGTGAGGCTACTACGTGTATCATACTGTTAAGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGAGGCTACTACGTGTATCAGACTGTGAAGTCACATGTGTAGTACTAAGT
* **
244835364 GCAGGCTACTATGCGTACTTAATGACTTCGATCAC
66 GCAGGCTACTACGCGTACCGAATG--TT-GATCAC
* *
244835399 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGATGAGGTCACGTGTGTAGTACTAA
1 GTGTGTAGTACTAAGTG-AGGCTACTACGTGTATCAGACTG-TGAAGTCACATGTGTAGTACTAA
* * **
244835463 GTGTAGGCTACTACGTGTACCGGTTGTTGATCAC
64 GTGCAGGCTACTACGCGTACCGAATGTTGATCAC
* * *
244835497 ATGTGTAGTACTAAGTGTAGGCTACTATGCGTATCAG
1 GTGTGTAGTACTAAGTG-AGGCTACTACGTGTATCAG
244835534 GTAGCTTCGG
Statistics
Matches: 117, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
98 39 0.33
99 2 0.02
100 19 0.16
101 57 0.49
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (97 bp):
GTGTGTAGTACTAAGTGAGGCTACTACGTGTATCAGACTGTGAAGTCACATGTGTAGTACTAAGT
GCAGGCTACTACGCGTACCGAATGTTGATCAC
Found at i:244835650 original size:27 final size:26
Alignment explanation
Indices: 244835620--244835671 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
244835610 GGGAAAATCG
244835620 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
244835647 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
244835672 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:244840116 original size:49 final size:48
Alignment explanation
Indices: 244840056--244840367 Score: 200
Period size: 49 Copynumber: 6.6 Consensus size: 48
244840046 CATCAAAGTT
* *
244840056 GATGTCATGTCCTAGACAGGTCTTACACTGACTTTCATATATCGAGACC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-CC
* * * * * *
244840105 GATGCCGTGTCCCAGACAGGTCTTACGCTGGCTCTCATCTATCGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGA-GCC
* * * * * *
244840154 GATGCCATGTCCCAGACAAGTCTTACATTGA--TACACA-A-CAAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGCC
** *
244840198 GACACCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCTCGAGACC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATATATCGAG-CC
* * * * * * *
244840247 GATG-CATGTCCTAGACATGTCTTACACT-AGC--TCTTGTCTCAAGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATCGAGCC
* * * *
244840292 GATG-CATGTCCCAGACATGTCTTACACTGGCTGGT-ATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACT-TTCATATATCGA-GCC
*
244840340 GATG-CATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
244840368 AGCACACATT
Statistics
Matches: 206, Mismatches: 43, Indels: 29
0.74 0.15 0.10
Matches are distributed among these distances:
43 1 0.00
44 26 0.13
45 32 0.16
46 11 0.05
47 8 0.04
48 59 0.29
49 68 0.33
50 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGCC
Found at i:244840250 original size:93 final size:91
Alignment explanation
Indices: 244840153--244840369 Score: 242
Period size: 93 Copynumber: 2.3 Consensus size: 91
244840143 CTATCGATGT
* *
244840153 CGATGCCATGTCCCAGACAAGTCTTACA-TTGATAC-ACAACAAG-CTGACACCATGTCCCAGAC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGAT-CTAC-ACAAGTC-GA-ACCATGTCCCAGAC
*
244840215 AGGTCTTACACTAGCTTGTATATCTCGAGAC
61 AGGTCTTACACTAGCTGGTATATCTCGAGAC
* * * * ** *
244840246 CGATGCATGTCCTAGACATGTCTTACACTAGCTCTTGTCTCAAGTCGATGCATGTCCCAGACATG
1 CGATGCATGTCCCAGACATGTCTTACACTAGATC-T-ACACAAGTCGAACCATGTCCCAGACAGG
* *
244840311 TCTTACACTGGCTGGTATATCTCGAGGC
64 TCTTACACTAGCTGGTATATCTCGAGAC
244840339 CGATGCATGTCCCAGACATGTCTTACACTAG
1 CGATGCATGTCCCAGACATGTCTTACACTAG
244840370 CACACATTAT
Statistics
Matches: 106, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
92 21 0.20
93 77 0.73
94 6 0.06
95 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (91 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGATCTACACAAGTCGAACCATGTCCCAGACAGGTC
TTACACTAGCTGGTATATCTCGAGAC
Found at i:244840263 original size:48 final size:47
Alignment explanation
Indices: 244840203--244840370 Score: 232
Period size: 48 Copynumber: 3.6 Consensus size: 47
244840193 AAGCTGACAC
*
244840203 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGACCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAG-CCGATG
* * * * *
244840251 CATGTCCTAGACATGTCTTACACTAGC-TCT-TGTCTCAAGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGCCGATG
* *
244840296 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-GCCGATG
244840344 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
244840371 ACACATTATC
Statistics
Matches: 103, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
45 30 0.29
46 8 0.08
47 8 0.08
48 57 0.55
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGCCGATG
Found at i:244848516 original size:16 final size:16
Alignment explanation
Indices: 244848495--244848525 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
244848485 TTTGGTCGTG
*
244848495 GTAGATCGATTGACTT
1 GTAGATAGATTGACTT
244848511 GTAGATAGATTGACT
1 GTAGATAGATTGACT
244848526 AAGTCGGCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.35
Consensus pattern (16 bp):
GTAGATAGATTGACTT
Found at i:244853998 original size:26 final size:25
Alignment explanation
Indices: 244853958--244854084 Score: 191
Period size: 26 Copynumber: 4.9 Consensus size: 25
244853948 CATGATATTC
* *
244853958 TTATCATGAAAATTTAACCTAACTCA
1 TTATCATGAACATTT-ACCTAACCCA
244853984 TTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
*
244854009 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
244854035 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
244854061 TTATCATGGAACATTTACCTAACC
1 TTATCAT-GAACATTTACCTAACC
244854085 TATNNNNNNN
Statistics
Matches: 94, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
25 17 0.18
26 76 0.81
27 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.06, T:0.33
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:244857106 original size:40 final size:40
Alignment explanation
Indices: 244857028--244857209 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
244857018 TCGAATGATG
* *
244857028 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
244857068 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
244857108 TTCGGGCTAAG--CCGAAGGCA-TTGTGTGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
244857145 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
244857185 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
244857210 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
36 8 0.07
37 15 0.12
38 18 0.15
39 13 0.11
40 59 0.49
41 8 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:244862778 original size:44 final size:44
Alignment explanation
Indices: 244862663--244862866 Score: 237
Period size: 44 Copynumber: 4.7 Consensus size: 44
244862653 AGTGTGCTCT
244862663 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAA--TGTAAGACCATGGTTGAAAGATACCATGGCAAC
244862709 CTG--A-G---TGTAAGACCAT-GTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTAAGACCATGGTTGAAAGATACCATGGCAAC
244862746 CTGATATG-AATGTTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATG-TAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
244862790 GTGATATGAAATGAAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
244862834 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAG
1 CTGATATG-AAAT--GTAAGACCATGGTTGAAAG
244862867 CACTATGGAT
Statistics
Matches: 139, Mismatches: 8, Indels: 22
0.82 0.05 0.13
Matches are distributed among these distances:
37 24 0.17
38 11 0.08
39 1 0.01
40 1 0.01
42 2 0.01
43 11 0.08
44 66 0.47
45 4 0.03
46 19 0.14
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (44 bp):
CTGATATGAAATGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:244863285 original size:13 final size:13
Alignment explanation
Indices: 244863267--244863293 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
244863257 AGTGTGAATT
244863267 TATATGAGATATG
1 TATATGAGATATG
244863280 TATATGAGATATG
1 TATATGAGATATG
244863293 T
1 T
244863294 GCAAGTATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TATATGAGATATG
Found at i:244866686 original size:40 final size:40
Alignment explanation
Indices: 244866631--244866839 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
244866621 AACATTGGAA
244866631 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
244866671 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
244866711 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
244866751 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
244866790 ACCAAATCCGGGTTATGA-CCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
244866830 CTATATCCGG
1 ATATATCCGG
244866840 TTAAATCCCG
Statistics
Matches: 150, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 24 0.16
40 126 0.84
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:244872156 original size:47 final size:47
Alignment explanation
Indices: 244872039--244872218 Score: 285
Period size: 47 Copynumber: 3.8 Consensus size: 47
244872029 TATATATGTG
244872039 TGTGGTAAAGCCGAATGGCTAATGTGAA-ATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATA
244872085 T-TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGATATGTATA
*
244872132 TGTGGTAAAGCCGAATGGCT-ATGTGAATATGTATGATGATATGGATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGA-GATATGTATA
* *
244872179 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGA
1 TGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGA
244872219 CGTGTGTATA
Statistics
Matches: 125, Mismatches: 3, Indels: 10
0.91 0.02 0.07
Matches are distributed among these distances:
45 24 0.19
46 14 0.11
47 53 0.42
48 24 0.19
49 10 0.08
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (47 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATA
Found at i:244872210 original size:95 final size:93
Alignment explanation
Indices: 244872039--244872218 Score: 299
Period size: 95 Copynumber: 1.9 Consensus size: 93
244872029 TATATATGTG
*
244872039 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTATGAGATATGTATATTGGTAAAGCCGAATGGCT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATGTATGAGATATGGATATTGGTAAAGCCGAATGGCT
*
244872104 AATGTGAAATATGTATGAGATATGTATA
66 AATGTGAAATATGTAGGAGATATGTATA
244872132 TGTGGTAAAGCCGAATGGCT-ATGTGAATATGTATGATGATATGGATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAA-ATGTATGA-GATATGGATAT-TGGTAAAGCCGAATG
*
244872196 GCTAGTGTGAAATATGTAGGAGA
63 GCTAATGTGAAATATGTAGGAGA
244872219 CGTGTGTATA
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
92 7 0.09
93 28 0.35
94 10 0.12
95 36 0.44
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (93 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATGTATGAGATATGGATATTGGTAAAGCCGAATGGCT
AATGTGAAATATGTAGGAGATATGTATA
Found at i:244872411 original size:36 final size:37
Alignment explanation
Indices: 244872360--244872493 Score: 208
Period size: 36 Copynumber: 3.8 Consensus size: 37
244872350 GGAAATATAT
244872360 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
244872397 TCCGGGT-AGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
244872433 TCTGGGT-AGACCCGATGA-T-CGTGTGGAGA-T-TG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
244872465 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
244872494 GGACTATTCG
Statistics
Matches: 91, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
32 8 0.09
33 11 0.12
34 11 0.12
35 8 0.09
36 46 0.51
37 7 0.08
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:244875679 original size:40 final size:40
Alignment explanation
Indices: 244875634--244875762 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
244875624 CGGAATATAA
*
244875634 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
244875674 CCGGATAGAATGACTCGCA-GAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
244875713 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
244875753 CCGGATATAA
1 CCGGATATAA
244875763 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 32 0.45
40 38 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:244875698 original size:39 final size:39
Alignment explanation
Indices: 244875650--244875759 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
244875640 ATAACCATGT
*
244875650 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAA-GCACTA
* *
244875690 GCAGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGCCACTA
1 GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTA
*
244875729 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
244875760 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
37 1 0.02
38 2 0.03
39 33 0.54
40 25 0.41
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTA
Found at i:244875777 original size:40 final size:40
Alignment explanation
Indices: 244875650--244875801 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
244875640 ATAACCATGT
* * *
244875650 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
* * ** *
244875690 GCAGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
244875729 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
244875769 GCATAATTGTCTTCGGGGCTTAGCACCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGC-CCGGATAT
244875802 CATTCAATTT
Statistics
Matches: 90, Mismatches: 19, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 31 0.34
40 51 0.57
41 8 0.09
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:244895371 original size:27 final size:26
Alignment explanation
Indices: 244895312--244895449 Score: 138
Period size: 27 Copynumber: 5.2 Consensus size: 26
244895302 AGCATGGCTG
* *
244895312 CAGAACAGAT-ATGTGACAGAGTCA-
1 CAGAACAGATAATGTGGCAGAGCCAC
244895336 CAGATACAGATAATCGTGGCAGAGCCAC
1 CAGA-ACAGATAAT-GTGGCAGAGCCAC
244895364 CAGAACAGATATATGTGGCAGAGCCAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
* *
244895391 CAGATCAGATATTTGTGGCAGAG-CAC
1 CAGAACAGATA-ATGTGGCAGAGCCAC
* ** *
244895417 CAGATCAGAATTTTGTGGCATAGCCAC
1 CAGAACAG-ATAATGTGGCAGAGCCAC
244895444 CAGAAC
1 CAGAAC
244895450 GCTTCCTCCA
Statistics
Matches: 100, Mismatches: 7, Indels: 11
0.85 0.06 0.09
Matches are distributed among these distances:
24 4 0.04
25 6 0.06
26 23 0.23
27 61 0.61
28 6 0.06
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.18
Consensus pattern (26 bp):
CAGAACAGATAATGTGGCAGAGCCAC
Found at i:244895400 original size:54 final size:53
Alignment explanation
Indices: 244895312--244895447 Score: 161
Period size: 54 Copynumber: 2.6 Consensus size: 53
244895302 AGCATGGCTG
* *
244895312 CAGAACAG-ATATGTGACAGAGTCA-CAGATACAGATAATCGTGGCAGAGCCAC
1 CAGAACAGAATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAG-CAC
* *
244895364 CAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCAC
1 CAGAACAGA-ATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCAC
* * *
244895417 CAGATCAGAATTTTGTGGCATAGCCACCAGA
1 CAGAACAGAA-TATGTGGCAGAGCCACCAGA
244895448 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
52 9 0.12
53 29 0.40
54 30 0.41
55 5 0.07
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.18
Consensus pattern (53 bp):
CAGAACAGAATATGTGGCAGAGCCACCAGATACAGATAATCGTGGCAGAGCAC
Found at i:244900834 original size:21 final size:21
Alignment explanation
Indices: 244900810--244900849 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
244900800 TTTATTTTAT
244900810 AGCATA-AGTAATAAAATAAAG
1 AGCATAGA-TAATAAAATAAAG
*
244900831 AGCATGGATAATAAAATAA
1 AGCATAGATAATAAAATAA
244900850 TAGTGGTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.60, C:0.05, G:0.15, T:0.20
Consensus pattern (21 bp):
AGCATAGATAATAAAATAAAG
Found at i:244902758 original size:40 final size:40
Alignment explanation
Indices: 244902712--244902798 Score: 156
Period size: 40 Copynumber: 2.2 Consensus size: 40
244902702 TGATATCCGT
*
244902712 TAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGAGA
*
244902752 TAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGGGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGAGA
244902792 TAAGTCC
1 TAAGTCC
244902799 NNNNNNNNNN
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGATTATATCCGAGA
Found at i:244904689 original size:40 final size:40
Alignment explanation
Indices: 244904585--244904750 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
244904575 CAATTGAATG
* *
244904585 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-TGACTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG--TT
*
244904626 -TATCCGGGCTAA-ACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* * *
244904664 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
* *
244904704 ATATCCGGGCTAAGACCCGAAGGCATTCGT-CGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
244904743 ATATCCGG
1 ATATCCGG
244904751 TTGTATTCCG
Statistics
Matches: 112, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
38 5 0.04
39 43 0.38
40 64 0.57
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
Found at i:244904716 original size:79 final size:78
Alignment explanation
Indices: 244904585--244904750 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 78
244904575 CAATTGAATG
* *
244904585 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAA-ACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
244904649 TTCGTGCAAGTTGTT
65 TTCGT-CAAGTGGTT
* *
244904664 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
244904728 ATTCGTCGTGTGGTT
64 ATTCGTCAAGTGGTT
244904743 ATATCCGG
1 ATATCCGG
244904751 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
78 2 0.03
79 58 0.75
80 17 0.22
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (78 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTCAAGTGGTT
Found at i:244911307 original size:38 final size:38
Alignment explanation
Indices: 244911210--244911317 Score: 146
Period size: 39 Copynumber: 2.8 Consensus size: 38
244911200 ATAATCACGT
* *
244911210 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGACAACTA
*
244911249 GCACGAATGCCTTCGGGTCTTAGCCCGGATAG-CCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGACAACTA
*
244911287 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
244911318 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
37 2 0.03
38 30 0.48
39 31 0.49
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGACAACTA
Done.