Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 81 of 770
Found at i:23886152 original size:124 final size:124
Alignment explanation
Indices: 23885974--23886215 Score: 466
Period size: 124 Copynumber: 2.0 Consensus size: 124
23885964 ATATGTATGG
23885974 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
23886039 AAGCCGAATGGCTAATGTGAAATATGTTTGGGATATGTATATGTGGTAAAGCCATTTGA
66 AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCATTTGA
*
23886098 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
23886163 AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCC
66 AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCC
23886216 GAATGGCTAA
Statistics
Matches: 116, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 116 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (124 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCATTTGA
Found at i:23886213 original size:172 final size:172
Alignment explanation
Indices: 23885927--23886263 Score: 638
Period size: 172 Copynumber: 2.0 Consensus size: 172
23885917 CAAGATAAAT
*
23885927 ATATGTATATGTGGTAAGGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
23885992 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
* *
23886057 GAAATATGTTTGGGATATGTATATGTGGTAAAGCCATTTGAG
131 GAAATATGTATGAGATATGTATATGTGGTAAAGCCATTTGAG
23886099 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
*
23886164 AGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
23886229 GAAATATGTATGAGATATGTATATGTGGTAAAGCC
131 GAAATATGTATGAGATATGTATATGTGGTAAAGCC
23886264 GAATGGCTAA
Statistics
Matches: 161, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
172 161 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (172 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAGATATGTATATGTGGTAAAGCCATTTGAG
Found at i:23886332 original size:146 final size:144
Alignment explanation
Indices: 23886095--23886390 Score: 493
Period size: 146 Copynumber: 2.0 Consensus size: 144
23886085 TAAAGCCATT
* *
23886095 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTG
1 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTG
* * * *
23886160 GTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTA
66 GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATACGTGGTAAAGCCGAAGGGCTA
23886225 ATGTGAAATATGTA
131 ATGTGAAATATGTA
23886239 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATG
1 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATG
*
23886304 TGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATACGTATACGTGGTAAAGCCGAAGGGC
64 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATACGTGGTAAAGCCGAAGGGC
*
23886369 TAGTGTGAAATATGTA
129 TAATGTGAAATATGTA
*
23886385 GGAGAT
1 TGAGAT
23886391 GTGTGTATAT
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
144 39 0.28
145 2 0.01
146 100 0.71
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (144 bp):
TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATACGTGGTAAAGCCGAAGGGCTA
ATGTGAAATATGTA
Found at i:23886336 original size:98 final size:98
Alignment explanation
Indices: 23886095--23886381 Score: 488
Period size: 98 Copynumber: 2.9 Consensus size: 98
23886085 TAAAGCCATT
*
23886095 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGGGATATGTATATGTG
1 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
*
23886160 GTAAAGCCGAATGGCTAATGTG-AA-ATATGTA
66 GTAAAGCCGAATGGCTAATGTGAAATATATATA
*
23886191 TGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
1 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
23886256 GTAAAGCCGAATGGCTAATGTGAAATATATATA
66 GTAAAGCCGAATGGCTAATGTGAAATATATATA
* * *
23886289 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATACGTATACGTG
1 TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
* *
23886354 GTAAAGCCGAAGGGCTAGTGTGAAATAT
66 GTAAAGCCGAATGGCTAATGTGAAATAT
23886382 GTAGGAGATG
Statistics
Matches: 180, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 85 0.47
97 2 0.01
98 93 0.52
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (98 bp):
TGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAAATATATATA
Found at i:23886639 original size:37 final size:37
Alignment explanation
Indices: 23886531--23886639 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
23886521 GGAAATATAT
* *
23886531 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
23886568 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
23886605 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
23886640 CATCTGACCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:23890491 original size:40 final size:40
Alignment explanation
Indices: 23890433--23890580 Score: 235
Period size: 40 Copynumber: 3.7 Consensus size: 40
23890423 TGAATGATAC
* * *
23890433 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
23890473 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
23890513 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
23890553 CCGGGCTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
23890581 TTGTGGTTGT
Statistics
Matches: 101, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
40 99 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:23890594 original size:40 final size:40
Alignment explanation
Indices: 23890433--23890600 Score: 230
Period size: 40 Copynumber: 4.2 Consensus size: 40
23890423 TGAATGATAC
* * * *
23890433 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
* *
23890473 CCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
*
23890513 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
* ** *
23890553 CCGGGCTAAGACCCGAAGGCAATTGTGCTTGTGGTTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
23890593 CC-GGCTAA
1 CCGGGCTAA
23890601 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 6 0.05
40 110 0.95
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTTATAT
Found at i:23893034 original size:31 final size:31
Alignment explanation
Indices: 23892994--23893063 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
23892984 TTTATAGTTC
*
23892994 CAGTATTTATTAACAGATATTTTATGAACAA
1 CAGTGTTTATTAACAGATATTTTATGAACAA
*
23893025 TAGTGTTTATTAACAGATATTTTATGAACAA
1 CAGTGTTTATTAACAGATATTTTATGAACAA
23893056 CAGTGTTT
1 CAGTGTTT
23893064 TAGAGTTCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (31 bp):
CAGTGTTTATTAACAGATATTTTATGAACAA
Found at i:23893039 original size:16 final size:15
Alignment explanation
Indices: 23892999--23893054 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
23892989 AGTTCCAGTA
*
23892999 TTTATTAACAGATAT
1 TTTATGAACAGATAT
23893014 TTTATGAACA-ATAGT
1 TTTATGAACAGATA-T
*
23893029 GTTTATTAACAGATAT
1 -TTTATGAACAGATAT
23893045 TTTATGAACA
1 TTTATGAACA
23893055 ACAGTGTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 3 0.09
15 19 0.54
16 10 0.29
17 3 0.09
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (15 bp):
TTTATGAACAGATAT
Found at i:23902642 original size:30 final size:30
Alignment explanation
Indices: 23902606--23902706 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
23902596 GACAAGATTG
* * *
23902606 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
23902636 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
23902664 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
23902693 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23902707 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:23902718 original size:29 final size:28
Alignment explanation
Indices: 23902635--23902710 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
23902625 AAAATTGTAC
* *
23902635 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
23902663 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
23902692 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
23902711 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:23910530 original size:30 final size:30
Alignment explanation
Indices: 23910494--23910594 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
23910484 GACAAGATTG
* * *
23910494 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
23910524 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
23910552 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
23910581 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23910595 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:23910606 original size:29 final size:28
Alignment explanation
Indices: 23910523--23910598 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
23910513 AAAATTGTAC
* *
23910523 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
23910551 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
23910580 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
23910599 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:23916378 original size:53 final size:53
Alignment explanation
Indices: 23916199--23916399 Score: 197
Period size: 53 Copynumber: 3.7 Consensus size: 53
23916189 AGGGTTTAAA
* * * * *
23916199 GATACCAAGTAAGACCATACCACGGCATGGCATTGGTAAGTTC-TGCAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCAT--AAGGCAAG
* * * * * * * *
23916253 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAG
* * *
23916308 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
* *
23916361 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAA
23916400 TTTTAAAAAA
Statistics
Matches: 117, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
53 43 0.37
54 32 0.27
55 41 0.35
57 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAG
Found at i:23916388 original size:108 final size:108
Alignment explanation
Indices: 23916196--23916392 Score: 288
Period size: 109 Copynumber: 1.8 Consensus size: 108
23916186 ATTAGGGTTT
* * * *
23916196 AAAGATACCAAGTAAGACCATACCACGGCATGGCATTGGTAAGTTCTGCAAGGCAAGGAAATCAT
1 AAAGATACCAAGTAAGACCATACCAAGGCATGGCAATGGTAAGTTCT-CAAGGCAAGGAAACCAC
23916261 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
65 GTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
* * * * *
23916305 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCAT-AAGGCAAGGATACCAC
1 AAAGATACCAAGTAAGACCATACCAAGGCATGGCAATGGTAAGTTC-TCAAGGCAAGGAAACCAC
23916369 GTAAGACCATGTCAAGACATGGCA
65 GTAAGACCATGTCAAGACATGGCA
23916393 ATGGTAATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
108 37 0.47
109 40 0.51
110 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (108 bp):
AAAGATACCAAGTAAGACCATACCAAGGCATGGCAATGGTAAGTTCTCAAGGCAAGGAAACCACG
TAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
Found at i:23924786 original size:135 final size:136
Alignment explanation
Indices: 23924541--23924811 Score: 517
Period size: 135 Copynumber: 2.0 Consensus size: 136
23924531 TTCAAGATCG
*
23924541 AAAGGGAGTGGAAAACCAAGTAGCAGACCACTTGTCTAGATTGGAGCCACGAGAAGGGAACTCTC
1 AAAGGGAGTGGAAAACCAAGTAGCAGACCACTTGTCTAGATTGGAGCCACAAGAAGGGAACTCTC
23924606 CTCTTATACCAATTCGAGAGGCGTTTCCAAATGAACACATACTGAAGGTAAATCATGTCCATAAT
66 CTCTTATACCAATTCGAGAGGCGTTTCCAAATGAACACATACTGAAGGTAAATCATGTCCATAAT
23924671 TCCCCT
131 TCCCCT
*
23924677 AAAGGGAGTGGAAAACCAAGTAGCAGACCACTTGTCTAGATTGGAGCCATAAGAA-GGAACTCTC
1 AAAGGGAGTGGAAAACCAAGTAGCAGACCACTTGTCTAGATTGGAGCCACAAGAAGGGAACTCTC
23924741 CTCTTATACCAATTCGAGAGGCGTTTCCAAATGAACACATACTGAAGGTAAATCATGTCCATAAT
66 CTCTTATACCAATTCGAGAGGCGTTTCCAAATGAACACATACTGAAGGTAAATCATGTCCATAAT
23924806 TCCCCT
131 TCCCCT
23924812 TGGTTTGCTG
Statistics
Matches: 133, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 80 0.60
136 53 0.40
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (136 bp):
AAAGGGAGTGGAAAACCAAGTAGCAGACCACTTGTCTAGATTGGAGCCACAAGAAGGGAACTCTC
CTCTTATACCAATTCGAGAGGCGTTTCCAAATGAACACATACTGAAGGTAAATCATGTCCATAAT
TCCCCT
Found at i:23934367 original size:43 final size:43
Alignment explanation
Indices: 23934319--23934402 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
23934309 ACATGTATCA
* *
23934319 CATCCATTATGAACTCGGACCACTCAACGATCTTGGATGCCCT
1 CATCCATAATGAACTCGGACCACTCAACGAGCTTGGATGCCCT
23934362 CATCCATAATGAACTCGGACCACTCAACGAGCTTGGATGCC
1 CATCCATAATGAACTCGGACCACTCAACGAGCTTGGATGCC
23934403 ACATATATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCACTCAACGAGCTTGGATGCCCT
Found at i:23940679 original size:15 final size:17
Alignment explanation
Indices: 23940661--23940692 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
23940651 TAACATAATT
23940661 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
23940676 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
23940693 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:23947904 original size:43 final size:43
Alignment explanation
Indices: 23947824--23947916 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
23947814 TCCTAGATAT
* **
23947824 GGTCTTACATGTTATCATATATCGATGCCTCTATCCCAAACAG
1 GGTCTTACATGTAATCATATATCGATGCCAATATCCCAAACAG
* * *
23947867 GGTCTTACATGTAATC-TCATATCGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCAT-ATATCGATGCCAATATCCCAAACAG
23947910 GGTCTTA
1 GGTCTTA
23947917 TACAAAATCA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 42 0.98
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (43 bp):
GGTCTTACATGTAATCATATATCGATGCCAATATCCCAAACAG
Found at i:23950844 original size:48 final size:48
Alignment explanation
Indices: 23950602--23950977 Score: 307
Period size: 48 Copynumber: 7.8 Consensus size: 48
23950592 ACCATGGCGG
* * * **
23950602 TATGGGAGCCAGTGTAAGACTATGTTTCCGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
*
23950650 TATGT--GCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
* *
23950696 TATGT--GCCAGTGAAAGACCATGTTTGGGACATGGCATCGGCAC-CGGTA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC-G-A
* * * * **** * *
23950744 TATGCGAGCCAGTGTAAGACCATGTTTGGAACATGACATCATTATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
* * * *
23950792 TATGTGAGCTAGTGTACGACCATGTCTGGGACATGGCATTGGCCTCAA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * * * *
23950840 TATGTGATCCAGTGTAAGACCATATTTGGAACATGGCA-CTGGCATTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCCTCGA
* * * * *
23950888 TATATGTGTCAGTGTAAGACCATGTCTGGGACCTGGCATTGGCAC-CGA
1 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGA
* * *
23950936 TGTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATC
1 --TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
23950978 AGCATTTTAC
Statistics
Matches: 255, Mismatches: 62, Indels: 20
0.76 0.18 0.06
Matches are distributed among these distances:
46 77 0.30
47 2 0.01
48 113 0.44
49 1 0.00
50 62 0.24
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:23950956 original size:194 final size:190
Alignment explanation
Indices: 23950631--23950978 Score: 473
Period size: 194 Copynumber: 1.8 Consensus size: 190
23950621 CTATGTTTCC
* * * *
23950631 GACATGGCATCGGCCTCGATATGTGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 GACATGGCATCGGCCTCAATATGTGCCAGTGAAAGACCATATCTGGAACATGGCATCGGCATCGA
* * *
23950696 TATGTGCCAGTGAAAGACCATGTTTGGGACATGGCATCGGCACCGGTATATGCGAGCCAGTGTAA
66 TATGTGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCACCGATATATGAGAGCCAGTGTAA
*
23950761 GACCATGTTTGGAACATGACATCATTATTGTTATGTGAGCTAGTGTACGACCATGTCTGG
131 GACCATGTCTGGAACATGACATCATTATTGTTATGTGAGCTAGTGTACGACCATGTCTGG
* * *
23950821 GACATGGCATTGGCCTCAATATGTGATCCAGTGTAAGACCATATTTGGAACATGGCA-CTGGCAT
1 GACATGGCATCGGCCTCAATATGTG--CCAGTGAAAGACCATATCTGGAACATGGCATC-GGCAT
* * * * * * *
23950885 TGTTATATGTGTCAGTGTAAGACCATGTCTGGGACCTGGCATTGGCACCGATGTATGAGAGCTAG
63 CG--ATATGTGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCACCGATATATGAGAGCCAG
*
23950950 TGTAAGACCATGTCTGGGACATGACATCA
126 TGTAAGACCATGTCTGGAACATGACATCA
23950979 GCATTTTACC
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
190 23 0.17
191 1 0.01
192 31 0.23
194 79 0.59
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (190 bp):
GACATGGCATCGGCCTCAATATGTGCCAGTGAAAGACCATATCTGGAACATGGCATCGGCATCGA
TATGTGCCAGTGAAAGACCATGTCTGGGACATGGCATCGGCACCGATATATGAGAGCCAGTGTAA
GACCATGTCTGGAACATGACATCATTATTGTTATGTGAGCTAGTGTACGACCATGTCTGG
Found at i:23955349 original size:27 final size:26
Alignment explanation
Indices: 23955312--23955424 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
23955302 AGCATGGCTG
* * *
23955312 CCAGAACAGATAATGTGACAAAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
23955338 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
23955366 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
23955393 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
23955421 CCAG
1 CCAG
23955425 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.51
28 32 0.42
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:23955397 original size:55 final size:54
Alignment explanation
Indices: 23955312--23955424 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
23955302 AGCATGGCTG
*
23955312 CCAGAACAGATAATGTGACAAAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
23955366 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
23955421 CCAG
1 CCAG
23955425 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:23957576 original size:12 final size:13
Alignment explanation
Indices: 23957547--23957580 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
23957537 GGAAAAAATA
23957547 AATGGCATAAGTTC
1 AATGGCATAAG-TC
23957561 AATGGCATAA-TC
1 AATGGCATAAGTC
23957573 AATGGCAT
1 AATGGCAT
23957581 GTTTAAACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 10 0.50
14 10 0.50
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (13 bp):
AATGGCATAAGTC
Found at i:23960877 original size:31 final size:31
Alignment explanation
Indices: 23960767--23960876 Score: 195
Period size: 31 Copynumber: 3.6 Consensus size: 31
23960757 TTAGTCTTGA
*
23960767 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23960797 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
23960828 CATATCACTGGGCCGAAGTCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
23960859 CATATCACTGGGCCGAAG
1 CATATCACTGGGCCGAAG
23960877 TTTTTACTGT
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:23960952 original size:42 final size:42
Alignment explanation
Indices: 23960905--23960996 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
23960895 TGGCCCTTAG
23960905 GCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATACAA
1 GCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATACAA
*
23960947 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
23960989 GCCCATTT
1 GCCCATTT
23960997 GGGGAGACTA
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
42 47 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATACAA
Found at i:23961177 original size:25 final size:25
Alignment explanation
Indices: 23961144--23961213 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
23961134 CTCTTTTAAT
* *
23961144 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
23961169 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
23961194 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
23961214 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:23962169 original size:27 final size:27
Alignment explanation
Indices: 23962139--23962236 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
23962129 GTAAATCTAC
23962139 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
23962166 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
23962192 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
23962222 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
23962237 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:23962393 original size:54 final size:52
Alignment explanation
Indices: 23962226--23962412 Score: 223
Period size: 54 Copynumber: 3.5 Consensus size: 52
23962216 TTTTGTAAAT
* *
23962226 CAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAA
1 CAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTT-ACAAA
* *
23962279 CCAGTGGTATTTAGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAA-TTTACAAA
**
23962333 CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT-TA-CAAA
** *
23962388 CAGGGGTATTTCAGTAATTTAACAA
1 CAGGGGTATTTTGGTAATTTTACAA
23962413 TCGAGGGTAA
Statistics
Matches: 117, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
53 3 0.03
54 106 0.91
55 8 0.07
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (52 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTACAAA
Found at i:23962393 original size:81 final size:80
Alignment explanation
Indices: 23962226--23962421 Score: 234
Period size: 81 Copynumber: 2.4 Consensus size: 80
23962216 TTTTGTAAAT
* *
23962226 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTT
*
23962291 AGGTAATTTTACAAA
66 AGGTAATTCTACAAA
* * *
23962306 CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 C-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTAT
* **
23962370 TTTGGTAATTCTATCCTA
64 TTAGGTAATTCTA-CAAA
** * *
23962388 CAGGGGTATTTCAGTAATTTAAC-AATCGAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTA
23962422 AAACGATAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
79 2 0.02
80 8 0.08
81 84 0.85
82 5 0.05
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTT
AGGTAATTCTACAAA
Found at i:23962398 original size:27 final size:27
Alignment explanation
Indices: 23962227--23962379 Score: 236
Period size: 27 Copynumber: 5.7 Consensus size: 27
23962217 TTTGTAAATC
23962227 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
23962253 TGAGGGTATTTCGGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
23962281 AGTGGTATTTAGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23962308 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23962335 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
23962362 AGGGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
23962380 CTATCCTACA
Statistics
Matches: 114, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 112 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:23962445 original size:27 final size:27
Alignment explanation
Indices: 23962411--23962594 Score: 226
Period size: 27 Copynumber: 6.8 Consensus size: 27
23962401 GTAATTTAAC
*
23962411 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
23962438 AA-CTGAGGGTAAAATGCTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
*
23962465 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
23962492 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * *
23962519 AATCAAGAGTAAAACAGTAATTTTTTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
23962546 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
23962573 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
23962595 CTACAAATCT
Statistics
Matches: 134, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.01
27 132 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:23962531 original size:81 final size:82
Alignment explanation
Indices: 23962411--23962605 Score: 261
Period size: 81 Copynumber: 2.4 Consensus size: 82
23962401 GTAATTTAAC
* * * * * *
23962411 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAA-TGCTAATTTTGTAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCTAAGAGTAAAACAG-TAATTTTGTAAATCGAGGG
*
23962474 TAAAACGGTAATTCTGTA
65 TAAAACGGTAATTCTATA
*
23962492 AATCGAGGGTAAAATGGTAATTTTATAAATC-AAGAGTAAAACAGTAATTTTTTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATCTAAGAGTAAAACAGTAATTTTGTAAATCGAGGGT
*
23962556 GAAACGGTAATTCTATA
66 AAAACGGTAATTCTATA
* *
23962573 AATCGAGGGTAAAATGGTAATTCTACAAATCTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATCTA
23962606 GGGCATTTCA
Statistics
Matches: 100, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
81 97 0.97
82 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.30
Consensus pattern (82 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCTAAGAGTAAAACAGTAATTTTGTAAATCGAGGGT
AAAACGGTAATTCTATA
Found at i:23966210 original size:42 final size:42
Alignment explanation
Indices: 23966097--23966214 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
23966087 CAGAAAGCTC
* * * *
23966097 ATACAATGCCAACGTCCCGGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGAAGTGGTCTTACATGAAATCAA
*
23966139 ATATCGATGCC-ACTGTCCTAGACAG-GGTCTTACATGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAGA-AGTGGTCTTACATGAAATCAA
*
23966182 ATACGATGCCAACGTCCCAGATGTGGTCTTACA
1 ATACGATGCCAACGTCCCAGAAGTGGTCTTACA
23966215 AAACAACACA
Statistics
Matches: 64, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.02
42 28 0.44
43 34 0.53
44 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGAAGTGGTCTTACATGAAATCAA
Found at i:23971321 original size:30 final size:30
Alignment explanation
Indices: 23971287--23971343 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
23971277 TGAGCCTAGG
*
23971287 GGCAAAAGTGTAAATATGCAAAAGTTTACA
1 GGCAAAAGTGTAAATATACAAAAGTTTACA
* * *
23971317 GGCAAAATTGTAATTTTACAAAAGTTT
1 GGCAAAAGTGTAAATATACAAAAGTTT
23971344 GAGTTAAGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.18, T:0.30
Consensus pattern (30 bp):
GGCAAAAGTGTAAATATACAAAAGTTTACA
Found at i:23973353 original size:2 final size:2
Alignment explanation
Indices: 23973346--23973372 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
23973336 TCATGGCATG
23973346 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
23973373 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23978910 original size:29 final size:29
Alignment explanation
Indices: 23978878--23978950 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
23978868 CTTCGAGCTC
* *
23978878 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
23978907 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
23978936 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
23978951 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:23980158 original size:24 final size:24
Alignment explanation
Indices: 23980117--23980172 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
23980107 TTTTTTTCCT
23980117 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
23980142 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
23980165 TATTCTTT
1 T-TTCTTT
23980173 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:23997278 original size:24 final size:24
Alignment explanation
Indices: 23997246--23997306 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
23997236 AAAATCCAAT
* * *
23997246 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
23997270 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
23997294 GCACTATGTGTGC
1 GCACTATGTGTGC
23997307 AAATCAGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:24006377 original size:23 final size:23
Alignment explanation
Indices: 24006328--24006379 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
24006318 TAAACTCAAT
*
24006328 TGAGCTGAACGGTAAGCTCCGTA
1 TGAGCTGAACGGTAAGCTCCATA
*
24006351 -GAGCTGAAATGGTAAGCT-CATA
1 TGAGCTG-AACGGTAAGCTCCATA
24006373 TGAGCTG
1 TGAGCTG
24006380 TGGTGAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (23 bp):
TGAGCTGAACGGTAAGCTCCATA
Found at i:24009866 original size:16 final size:15
Alignment explanation
Indices: 24009841--24009876 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
24009831 TTATAATTTA
*
24009841 AATAAAATAATAATT
1 AATAATATAATAATT
24009856 ATATAATATAATAATT
1 A-ATAATATAATAATT
24009872 AATAA
1 AATAA
24009877 ATTAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATATAATAATT
Found at i:24014585 original size:16 final size:15
Alignment explanation
Indices: 24014560--24014595 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
24014550 TTATAATTTA
*
24014560 AATAAAATAATAATT
1 AATAATATAATAATT
24014575 ATATAATATAATAATT
1 A-ATAATATAATAATT
24014591 AATAA
1 AATAA
24014596 ATTAAGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AATAATATAATAATT
Found at i:24015382 original size:43 final size:42
Alignment explanation
Indices: 24015268--24015385 Score: 102
Period size: 43 Copynumber: 2.8 Consensus size: 42
24015258 TACAATGCTG
* *
24015268 ACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCC
1 ACGTCCCAGAAGTGGTCTT-CACGTAAATCAAATATCGATGCC
*
24015310 ACTGTCCCAGAAAG-GGTC-TCATTC-AAAATCAAATA-CGATGCC
1 AC-GTCCCAG-AAGTGGTCTTCA--CGTAAATCAAATATCGATGCC
*
24015352 AACGTCCCAGATGTGGTCTTGCACGTAAATCAAA
1 -ACGTCCCAGAAGTGGTCTT-CACGTAAATCAAA
24015386 AGTCAAAGCC
Statistics
Matches: 61, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
41 4 0.07
42 22 0.36
43 31 0.51
44 4 0.07
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ACGTCCCAGAAGTGGTCTTCACGTAAATCAAATATCGATGCC
Found at i:24017367 original size:27 final size:26
Alignment explanation
Indices: 24017311--24017367 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
24017301 CAACCTTAAC
* * *
24017311 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
24017337 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
24017364 CCTA
1 CCTA
24017368 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:24019957 original size:93 final size:93
Alignment explanation
Indices: 24019798--24019984 Score: 374
Period size: 93 Copynumber: 2.0 Consensus size: 93
24019788 TAAATGAAAA
24019798 TTAGCATGTAATTTTAACTAGGTCGAATATTAACAATCTCATATACATATAAATCACTCTTTTAA
1 TTAGCATGTAATTTTAACTAGGTCGAATATTAACAATCTCATATACATATAAATCACTCTTTTAA
24019863 CATGCATAGTTTATATCATCATCTCAAG
66 CATGCATAGTTTATATCATCATCTCAAG
24019891 TTAGCATGTAATTTTAACTAGGTCGAATATTAACAATCTCATATACATATAAATCACTCTTTTAA
1 TTAGCATGTAATTTTAACTAGGTCGAATATTAACAATCTCATATACATATAAATCACTCTTTTAA
24019956 CATGCATAGTTTATATCATCATCTCAAG
66 CATGCATAGTTTATATCATCATCTCAAG
24019984 T
1 T
24019985 ACTATACTTA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 94 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (93 bp):
TTAGCATGTAATTTTAACTAGGTCGAATATTAACAATCTCATATACATATAAATCACTCTTTTAA
CATGCATAGTTTATATCATCATCTCAAG
Found at i:24020196 original size:42 final size:43
Alignment explanation
Indices: 24020132--24020244 Score: 165
Period size: 43 Copynumber: 2.7 Consensus size: 43
24020122 AGCTCGTACA
* * * * *
24020132 ATGCCAATGTCCCAGACATGGTCTTACATGTAAT-AACTATGG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAACTATCG
24020174 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAACTATCG
1 ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAACTATCG
*
24020217 ATGCCAACGTCCCAAATGTGGTCTTACA
1 ATGCCAACGTCCCAAACGTGGTCTTACA
24020245 AAAAATCACA
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACGTGGTCTTACACGTAATCAACTATCG
Found at i:24027444 original size:40 final size:41
Alignment explanation
Indices: 24027399--24027565 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
24027389 CGGAATATAA
*
24027399 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
24027439 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24027479 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24027519 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
24027558 CCGGATAT
1 CCGGATAT
24027566 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24028411 original size:17 final size:19
Alignment explanation
Indices: 24028388--24028433 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
24028378 AAGAAGCATG
24028388 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
24028406 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
24028424 AATCATGCTC
1 AATCATGCTC
24028434 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:24035453 original size:40 final size:41
Alignment explanation
Indices: 24035408--24035574 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
24035398 CGGAATATAA
*
24035408 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
24035448 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
24035488 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24035528 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
24035567 CCGGATAT
1 CCGGATAT
24035575 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24036421 original size:17 final size:19
Alignment explanation
Indices: 24036398--24036443 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
24036388 AAGAAGCATG
24036398 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
24036416 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
24036434 AATCATGCTC
1 AATCATGCTC
24036444 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:24041942 original size:24 final size:24
Alignment explanation
Indices: 24041888--24041942 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
24041878 TAGCTATCTA
* * *
24041888 GAGCTTCTTGATATGGTTCTTTGT
1 GAGCTTCTCGATATGGCTCTTTAT
*
24041912 GAACTTCTCGATTATGGCTC-TTAT
1 GAGCTTCTCGA-TATGGCTCTTTAT
24041936 GAGCTTC
1 GAGCTTC
24041943 CTGTTACATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.16, C:0.18, G:0.22, T:0.44
Consensus pattern (24 bp):
GAGCTTCTCGATATGGCTCTTTAT
Found at i:24045443 original size:42 final size:42
Alignment explanation
Indices: 24045354--24045512 Score: 187
Period size: 42 Copynumber: 3.7 Consensus size: 42
24045344 ATCTGGGATG
* * *
24045354 TTGGCATCG-ACTTATGATTTACGTGTAAGACCATGTTTGAGACA
1 TTGGCATCGTA-TT-TGATTT-CGTGTAAGACCCTATTTGGGACA
*
24045398 TTGGCATCGTATTTGA-TTCTGTGTAAGACCCTATTTGGGATA
1 TTGGCATCGTATTTGATTTC-GTGTAAGACCCTATTTGGGACA
*
24045440 TTGGCATCGTATTTGATTTCGTGTAAGACCCTATATGGGACA
1 TTGGCATCGTATTTGATTTCGTGTAAGACCCTATTTGGGACA
* * *
24045482 GTGGCATCGATATTTGATTACATGTAAGACC
1 TTGGCATCG-TATTTGATTTCGTGTAAGACC
24045513 ACGTCTGGGA
Statistics
Matches: 102, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
41 1 0.01
42 64 0.63
43 25 0.25
44 11 0.11
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (42 bp):
TTGGCATCGTATTTGATTTCGTGTAAGACCCTATTTGGGACA
Found at i:24045522 original size:85 final size:85
Alignment explanation
Indices: 24045330--24045531 Score: 250
Period size: 85 Copynumber: 2.4 Consensus size: 85
24045320 ATATGTGCTA
* *
24045330 TCATGTAAGACCACATCTGGGATGTTGGCATCGACTTATGATTTACGTGTAAGACCATGTTTGAG
1 TCATGTAAGACCACATCTGGGATGTTGGCATCGACTTATGATTTACGTGTAAGACCATATATGAG
*
24045395 ACATTGGCATCGTATTTGAT
66 ACAGTGGCATCGTATTTGAT
* * * *
24045415 TCTGTGTAAGACC-CTATTTGGGATATTGGCATCGTA-TT-TGATTT-CGTGTAAGACCCTATAT
1 TC-ATGTAAGACCAC-ATCTGGGATGTTGGCATCG-ACTTATGATTTACGTGTAAGACCATATAT
*
24045476 GGGACAGTGGCATCGATATTTGAT
63 GAGACAGTGGCATCG-TATTTGAT
*
24045500 TACATGTAAGACCACGTCTGGGATGTTGGCAT
1 T-CATGTAAGACCACATCTGGGATGTTGGCAT
24045532 TATATGAGCT
Statistics
Matches: 99, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
84 27 0.27
85 41 0.41
86 30 0.30
87 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (85 bp):
TCATGTAAGACCACATCTGGGATGTTGGCATCGACTTATGATTTACGTGTAAGACCATATATGAG
ACAGTGGCATCGTATTTGAT
Found at i:24045530 original size:43 final size:42
Alignment explanation
Indices: 24045333--24045531 Score: 174
Period size: 42 Copynumber: 4.7 Consensus size: 42
24045323 TGTGCTATCA
24045333 TGTAAGACCACATCTGGGATGTTGGCATCG-ACTTATGATTTACG
1 TGTAAGACCACATCTGGGATGTTGGCATCGTA-TT-TGA-TTACG
** * * **
24045377 TGTAAGACCATGTTTGAGACATTGGCATCGTATTTGATT-CTG
1 TGTAAGACCACATCTGGGATGTTGGCATCGTATTTGATTAC-G
* * *
24045419 TGTAAGACC-CTATTTGGGATATTGGCATCGTATTTGATTTCG
1 TGTAAGACCAC-ATCTGGGATGTTGGCATCGTATTTGATTACG
* * *
24045461 TGTAAGACC-CTATATGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGA-TGTTGGCATCG-TATTTGATTACG
*
24045504 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACATCTGGGATGTTGGCAT
24045532 TATATGAGCT
Statistics
Matches: 129, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.01
42 65 0.50
43 35 0.27
44 27 0.21
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGATGTTGGCATCGTATTTGATTACG
Found at i:24048108 original size:29 final size:29
Alignment explanation
Indices: 24048021--24048210 Score: 161
Period size: 29 Copynumber: 6.6 Consensus size: 29
24048011 CTACTCGATT
*
24048021 TCGCACACTTAGTGCCACGTA-ATTT-AAGC
1 TCGCACACTTAGTGCCA--TATATTTCCAGC
* ** *** *
24048050 CCGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
** * *
24048079 TCGCACACCCAGTGCCGTATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* * * *
24048108 TTGCACACATAGTGTCATATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
24048137 AT-GCACACTTAGTGCCTTATATTTCCAGC
1 -TCGCACACTTAGTGCCATATATTTCCAGC
*
24048166 ACGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
24048195 ACGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
24048211 GATCTCGTCA
Statistics
Matches: 133, Mismatches: 24, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 128 0.96
30 1 0.01
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:24048143 original size:58 final size:58
Alignment explanation
Indices: 24048022--24048211 Score: 186
Period size: 58 Copynumber: 3.3 Consensus size: 58
24048012 TACTCGATTT
* * * *** * *
24048022 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
** * ** * *
24048080 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
24048138 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
24048196 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
24048212 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 97 0.92
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:24049104 original size:142 final size:142
Alignment explanation
Indices: 24048848--24049143 Score: 565
Period size: 142 Copynumber: 2.1 Consensus size: 142
24048838 AAATTCTATA
*
24048848 GCATGGCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTT
1 GCATGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTT
24048913 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
66 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
*
24048978 GGAAGACAACAT
131 GGAAAACAACAT
24048990 GCATGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTT
1 GCATGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTT
24049055 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
66 TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
24049120 GGAAAACAACAT
131 GGAAAACAACAT
24049132 GCATGGCCGAAT
1 GCAT-GCCGAAT
24049144 TTTAACTCAC
Statistics
Matches: 151, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
142 144 0.95
143 7 0.05
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.22
Consensus pattern (142 bp):
GCATGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTT
TTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAA
GGAAAACAACAT
Found at i:24056053 original size:29 final size:29
Alignment explanation
Indices: 24055966--24056157 Score: 165
Period size: 29 Copynumber: 6.6 Consensus size: 29
24055956 CTACTCGATT
*
24055966 TCGCACACTTAGTGCCACGTA-ATTT-AAGC
1 TCGCACACTTAGTGCCA--TATATTTCCAGC
* ** *** *
24055995 CCGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
** * *
24056024 TCGCACACCCAGTGCCGTATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
* * * *
24056053 TTGCACACATAGTGTCATATTTTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
24056082 AT-GCACACTTAGTGCCTTATATTTCCAGC
1 -TCGCACACTTAGTGCCATATATTTCCAGC
*
24056111 ACGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATATATTTCCAGC
*
24056140 ACGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
24056158 CTCGTCACCG
Statistics
Matches: 135, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
27 2 0.01
28 2 0.01
29 130 0.96
30 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATATTTCCAGC
Found at i:24056148 original size:58 final size:58
Alignment explanation
Indices: 24055967--24056155 Score: 184
Period size: 58 Copynumber: 3.3 Consensus size: 58
24055957 TACTCGATTT
* * * *** * *
24055967 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
** * ** * *
24056025 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
24056083 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
24056141 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
24056156 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 97 0.92
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:24057047 original size:143 final size:143
Alignment explanation
Indices: 24056789--24057086 Score: 587
Period size: 143 Copynumber: 2.1 Consensus size: 143
24056779 AAATTCTATA
24056789 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
24056854 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
*
24056919 AGGAAGACAACAT
131 AGGAAAACAACAT
24056932 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
24056997 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
66 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
24057062 AGGAAAACAACAT
131 AGGAAAACAACAT
24057075 GCATGGCCGAAT
1 GCATGGCCGAAT
24057087 TTTAACTCAC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 154 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.21
Consensus pattern (143 bp):
GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
AGGAAAACAACAT
Found at i:24061154 original size:24 final size:24
Alignment explanation
Indices: 24061114--24061171 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
24061104 TTCCCGTTAT
24061114 GGTTCTTT-TGAACTTCCCGAAAA
1 GGTTCTTTGTGAACTTCCCGAAAA
* *
24061137 GGTTTTTTGTGAACTTCCTGAAAA
1 GGTTCTTTGTGAACTTCCCGAAAA
24061161 GGTTCTTTGTG
1 GGTTCTTTGTG
24061172 CCCTAATTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (24 bp):
GGTTCTTTGTGAACTTCCCGAAAA
Found at i:24081457 original size:20 final size:21
Alignment explanation
Indices: 24081423--24081471 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
24081413 TTATAATATC
*
24081423 ATAAATAATATGAATAAAAAA
1 ATAAATAATAGGAATAAAAAA
*
24081444 ATAAA-AATAGGAATAAAAGA
1 ATAAATAATAGGAATAAAAAA
*
24081464 AGAAATAA
1 ATAAATAA
24081472 AAAAAATAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.18
Consensus pattern (21 bp):
ATAAATAATAGGAATAAAAAA
Found at i:24082246 original size:24 final size:24
Alignment explanation
Indices: 24082197--24082284 Score: 108
Period size: 24 Copynumber: 3.7 Consensus size: 24
24082187 AAGGTTATGC
*
24082197 GGCACTATGTATGC-A-AAAACTAAT
1 GGCACTATGTGTGCGAGAAAAC--AT
**
24082221 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
*
24082245 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACAT
24082269 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
24082285 ATAAGTAAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
24 52 0.93
25 1 0.02
26 3 0.05
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:24086790 original size:27 final size:27
Alignment explanation
Indices: 24086752--24087155 Score: 246
Period size: 27 Copynumber: 15.0 Consensus size: 27
24086742 AAACATATAT
* *
24086752 CACATAGGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAC
* *
24086779 CACATAAAGGCAAAATC-ATCATTTTAT
1 CACATAAGGGCAAAA-CAATCATTTTAC
* ** * *
24086806 CACATAAGGGAAAAACTGTCAATTTAA
1 CACATAAGGGCAAAACAATCATTTTAC
* * * *
24086833 CGCATAAGGGCAAAATAGTCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
24086860 CACATAAGGGAAAAACTATCATTTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
24086887 CACATAAGGGCAAAATC-GTCAATTTAT
1 CACATAAGGGCAAAA-CAATCATTTTAC
* *** *
24086914 CACATAAGGGTAAAATTGTCATTTTAA
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
24086941 CGCATAAGGGC-AAA-AGTCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAC
* *
24086966 CACATAAGGGCAAAATC-ATCAATTTAA
1 CACATAAGGGCAAAA-CAATCATTTTAC
** * * * *
24086993 CGTATAAGGGAAAAATAGTCATTTTGC
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
24087020 CACATAAGGGCAAAATC-GTCAATTTAA
1 CACATAAGGGCAAAA-CAATCATTTTAC
** * *
24087047 CGTATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
* * * * *
24087074 CATATAAGGGAAAAACTATCAATTTAT
1 CACATAAGGGCAAAACAATCATTTTAC
* * *
24087101 TACATAAGGGCAAAATC-GTCATTTTTC
1 CACATAAGGGCAAAA-CAATCATTTTAC
**
24087128 CACATAAGGGCAAAACCGTCATTTTAC
1 CACATAAGGGCAAAACAATCATTTTAC
24087155 C
1 C
24087156 CTACACGGGT
Statistics
Matches: 289, Mismatches: 76, Indels: 24
0.74 0.20 0.06
Matches are distributed among these distances:
25 18 0.06
26 8 0.03
27 260 0.90
28 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (27 bp):
CACATAAGGGCAAAACAATCATTTTAC
Found at i:24086808 original size:54 final size:54
Alignment explanation
Indices: 24086749--24087153 Score: 322
Period size: 54 Copynumber: 7.5 Consensus size: 54
24086739 TATAAACATA
* * * ** *
24086749 TATCACATAGGGGCAAAACAATCATTTTGCCACATAAAGGCAAAATCATCATTT
1 TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCATCATTT
* * *
24086803 TATCACATAAGGGAAAAACTGTCAATTTAACGCATAAGGGCAAAAT-AGTCATTT
1 TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCA-TCATTT
** * * *
24086857 TGCCACATAAGGGAAAAACTATCATTTTATCACATAAGGGCAAAATCGTCAATT
1 TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCATCATTT
* * * * *
24086911 TATCACATAAGGGTAAAATTGTCATTTTAACGCATAAGGGCAAAA--GTCATTT
1 TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCATCATTT
** * * ** *
24086963 TGCCACATAAGGGCAAAA-TCATCAATTTAACGTATAAGGGAAAAAT-AGTCATTT
1 TATCACATAAGGGAAAAACT-ATCATTTTAACACATAAGGGCAAAATCA-TCATTT
** * * * **
24087017 TGCCACATAAGGGCAAAA-TCGTCAATTTAACGTATAAGGGCAAAAT-AGTCATTT
1 TATCACATAAGGGAAAAACT-ATCATTTTAACACATAAGGGCAAAATCA-TCATTT
* * * ** *
24087071 TACCATATAAGGGAAAAACTATCAATTTATTACATAAGGGCAAAATCGTCATTT
1 TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCATCATTT
* **
24087125 T-TCCACATAAGGGCAAAACCGTCATTTTA
1 TAT-CACATAAGGGAAAAACTATCATTTTA
24087154 CCCTACACGG
Statistics
Matches: 293, Mismatches: 50, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
51 1 0.00
52 42 0.14
53 1 0.00
54 248 0.85
55 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (54 bp):
TATCACATAAGGGAAAAACTATCATTTTAACACATAAGGGCAAAATCATCATTT
Found at i:24086882 original size:81 final size:80
Alignment explanation
Indices: 24086754--24087153 Score: 376
Period size: 81 Copynumber: 5.0 Consensus size: 80
24086744 ACATATATCA
* * * *
24086754 CATAGGGGCAAAACAATCATTTTGCCACATAAAGGCAAAATCATCATTTTATCACATAAGGG-AA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAAT-ATCATTTTATCACATAAGGGCAA
*
24086818 AAACTGTCAATTTAACG
65 AATC-GTCAATTTAACG
*
24086835 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGAAAAACTATCATTTTATCACATAAGGGCAA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAA-TATCATTTTATCACATAAGGGCAA
* *
24086900 AATCGTCAATTTATCA
65 AATCGTCAATTTAACG
* * ** * * **
24086916 CATAAGGGTAAAATTGTCATTTTAACGCATAAGGGCAAAA-GTCATTTTGCCACATAAGGGCAAA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAATATCATTTTATCACATAAGGGCAAA
*
24086980 ATCATCAATTTAACG
66 ATCGTCAATTTAACG
* * * * * **
24086995 TATAAGGGAAAAATAGTCATTTTGCCACATAAGGGCAAAATCGTCAATTTAACGTATAAGGGCAA
1 CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAAT-ATCATTTTATCACATAAGGGCAA
* * * *
24087060 AATAGTCATTTTACCA
65 AATCGTCAATTTAACG
* * * *** *
24087076 TATAAGGGAAAAACTA-TCAATTTATTACATAAGGGCAAAATCGTCATTTT-TCCACATAAGGGC
1 CATAAGGGCAAAA-TAGTCATTTTGCCACATAAGGGCAAAAT-ATCATTTTAT-CACATAAGGGC
* *
24087139 AAAACCGTCATTTTA
63 AAAATCGTCAATTTA
24087154 CCCTACACGG
Statistics
Matches: 267, Mismatches: 46, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
79 67 0.25
81 192 0.72
82 8 0.03
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.27
Consensus pattern (80 bp):
CATAAGGGCAAAATAGTCATTTTGCCACATAAGGGCAAAATATCATTTTATCACATAAGGGCAAA
ATCGTCAATTTAACG
Found at i:24089119 original size:56 final size:54
Alignment explanation
Indices: 24088960--24089119 Score: 194
Period size: 56 Copynumber: 2.9 Consensus size: 54
24088950 TTTGATGACA
* * * *
24088960 TGATACATGCTAGGTTTGGGAGCTTGTGTAGCCCCGTTGAGAGGCATGTAATAATG
1 TGATACATGCTAGGTTCGGGAGCTTATGTAGCCCTGTTGAGAGGC--GTGATAATG
* * * * *
24089016 TGATACACGCTAGGTCCAGGAGCTTATGTAGCCCTATTGAGAGGCGTGGTAATG
1 TGATACATGCTAGGTTCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGATAATG
*
24089070 TGATACATGCTAGGTTCGGGTGCTCATATGTAGCCCTGTTGAGAGGCGTG
1 TGATACATGCTAGGTTCGGGAGCT--TATGTAGCCCTGTTGAGAGGCGTG
24089120 CTATGTCATG
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 27 0.31
56 61 0.69
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.29
Consensus pattern (54 bp):
TGATACATGCTAGGTTCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGATAATG
Found at i:24092984 original size:14 final size:15
Alignment explanation
Indices: 24092965--24092994 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
24092955 GTTTATTATA
24092965 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
24092979 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
24092994 T
1 T
24092995 CTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:24096841 original size:17 final size:17
Alignment explanation
Indices: 24096812--24096845 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
24096802 GACCTCAAAT
24096812 TTTGAACTCTATAGCTA
1 TTTGAACTCTATAGCTA
24096829 TTTGATACT-TATAGCTA
1 TTTGA-ACTCTATAGCTA
24096846 CTAGAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
TTTGAACTCTATAGCTA
Found at i:24099168 original size:26 final size:26
Alignment explanation
Indices: 24099138--24099189 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
24099128 TTATATTGTG
24099138 TTAGTTATAAATGGATTTGAATATAC
1 TTAGTTATAAATGGATTTGAATATAC
24099164 TTAGTTATAAATGGATTTGAATATAC
1 TTAGTTATAAATGGATTTGAATATAC
24099190 ATGTATTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.42
Consensus pattern (26 bp):
TTAGTTATAAATGGATTTGAATATAC
Found at i:24100443 original size:54 final size:54
Alignment explanation
Indices: 24100377--24100479 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
24100367 TTAGTGTATT
*
24100377 AAGTCAATGAGTTACACGGCCTAGCACATAGCCTGCGACATGGCCATGTGTCGC
1 AAGTCAATGAGTTACACGGCCTAGCACATAGCCTGCGACATGACCATGTGTCGC
* * * * *
24100431 AAGTCAGA-GAGTTACATGGTCTGGCACATGGCCTGGGACATGACCATGT
1 AAGTCA-ATGAGTTACACGGCCTAGCACATAGCCTGCGACATGACCATGT
24100480 AACCCAACTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 41 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.21
Consensus pattern (54 bp):
AAGTCAATGAGTTACACGGCCTAGCACATAGCCTGCGACATGACCATGTGTCGC
Found at i:24100497 original size:54 final size:54
Alignment explanation
Indices: 24100384--24100503 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
24100374 ATTAAGTCAA
* * ** * *
24100384 TGAGTTACACGGCCTAGCACATAGCCTGCGACATGGCCATGTGTCGCAAGTCAG
1 TGAGTTACATGGCCTAGCACATAGCCTGCGACATGACCATGTAACCCAACTCAG
* * * * * *
24100438 AGAGTTACATGGTCTGGCACATGGCCTGGGACATGACCATGTAACCCAACTTAG
1 TGAGTTACATGGCCTAGCACATAGCCTGCGACATGACCATGTAACCCAACTCAG
24100492 TGAGTTACATGG
1 TGAGTTACATGG
24100504 GTAAAGACAC
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (54 bp):
TGAGTTACATGGCCTAGCACATAGCCTGCGACATGACCATGTAACCCAACTCAG
Found at i:24100654 original size:21 final size:21
Alignment explanation
Indices: 24100628--24100680 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
24100618 CTACTTTTTC
* *
24100628 TCAAATTAATCTCGATTTGTT
1 TCAAATTAATCCCGAATTGTT
*
24100649 TCAAATTAGTCCCGAATTGTT
1 TCAAATTAATCCCGAATTGTT
24100670 TCTAAATTAAT
1 TC-AAATTAAT
24100681 TTTAAGCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 20 0.74
22 7 0.26
ACGTcount: A:0.32, C:0.15, G:0.09, T:0.43
Consensus pattern (21 bp):
TCAAATTAATCCCGAATTGTT
Found at i:24101848 original size:24 final size:26
Alignment explanation
Indices: 24101807--24101854 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
24101797 CCTTGCATGC
24101807 ATATATGATGATTAAGTTATATATAT
1 ATATATGATGATTAAGTTATATATAT
* *
24101833 ATATAT-ATG-TTTAGTTTTATAT
1 ATATATGATGATTAAGTTATATAT
24101855 TGAGTCTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 3 0.15
26 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (26 bp):
ATATATGATGATTAAGTTATATATAT
Found at i:24105817 original size:20 final size:22
Alignment explanation
Indices: 24105792--24105842 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
24105782 TTATTATGAG
24105792 TATTATTTTTAATTA-TATAT-
1 TATTATTTTTAATTATTATATA
* *
24105812 TATTATTATTACTTATTATATA
1 TATTATTTTTAATTATTATATA
24105834 TATTATTTT
1 TATTATTTT
24105843 CCTTAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 13 0.50
21 5 0.19
22 8 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTATTTTTAATTATTATATA
Found at i:24105852 original size:23 final size:24
Alignment explanation
Indices: 24105792--24105857 Score: 70
Period size: 23 Copynumber: 2.9 Consensus size: 24
24105782 TTATTATGAG
*
24105792 TATTATT-TTTAATTATATATTAT
1 TATTATTACTTAATTATATATTAT
24105815 TATTATTACTT-ATTATATA-TAT
1 TATTATTACTTAATTATATATTAT
*
24105837 TATT-TTCCTTAAATTAT-TATT
1 TATTATTACTT-AATTATATATT
24105858 TTACATCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
21 5 0.14
22 9 0.24
23 21 0.57
24 2 0.05
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (24 bp):
TATTATTACTTAATTATATATTAT
Found at i:24105924 original size:30 final size:29
Alignment explanation
Indices: 24105885--24105945 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
24105875 ATTATATTTA
24105885 TTACTTATATATATGTATTGTT-TTATATG
1 TTACTTATATATAT-TATTGTTCTTATATG
* *
24105914 TTACTTTATATCTATTATTTTTCTTATATG
1 TTAC-TTATATATATTATTGTTCTTATATG
24105944 TT
1 TT
24105946 TATATTACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.62
Consensus pattern (29 bp):
TTACTTATATATATTATTGTTCTTATATG
Found at i:24112988 original size:45 final size:44
Alignment explanation
Indices: 24112885--24112989 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 44
24112875 TATTAATCGG
* *
24112885 GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTGG
1 GCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAAATGATATTGA
* *
24112929 GCCTTTGAGCCTAGCAAGCTATAATGCCGGTTAGAT-ACTATTTGA
1 GCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAAATGA-TA-TTGA
*
24112974 GCCTTCGAGCCTAGCA
1 GCCTTTGAGCCTAGCA
24112990 GGCGAAATGT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
43 1 0.02
44 35 0.65
45 18 0.33
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.28
Consensus pattern (44 bp):
GCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAAATGATATTGA
Found at i:24113933 original size:42 final size:43
Alignment explanation
Indices: 24113868--24113958 Score: 116
Period size: 42 Copynumber: 2.1 Consensus size: 43
24113858 AAGTTGTACA
**
24113868 ATGCCAATGTCCCAGATGTGGTCTTACAT-GTAGTCACATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTAC-TCGTAAACACATATCG
*
24113911 ATGCCACT-TCCCAGATAG-GGTCTTACTCGTAAACACATATCG
1 ATGCCAATGTCCCAGAT-GTGGTCTTACTCGTAAACACATATCG
24113953 ATGCCA
1 ATGCCA
24113959 TGGTCTTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
41 1 0.02
42 34 0.79
43 8 0.19
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATGTGGTCTTACTCGTAAACACATATCG
Found at i:24116437 original size:27 final size:27
Alignment explanation
Indices: 24116414--24116537 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
24116404 CAATTTACAG
24116414 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
* * *
24116441 AATCACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTATAA
* *
24116468 AATTACTAAAATACCCTTTGTTTATAA
1 AATTACCAAAATACCCTTGGTTTATAA
*
24116495 AATTACCAAAATACCCATGGTTTGA-AA
1 AATTACCAAAATACCCTTGGTTT-ATAA
*
24116522 AATTACTAAAATACCC
1 AATTACCAAAATACCC
24116538 CTGTAGGGTA
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTATAA
Found at i:24116442 original size:54 final size:54
Alignment explanation
Indices: 24116384--24116537 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 54
24116374 CCTCGACTTG
* *
24116384 TAAAATTACCAAAGTA-CTCTCAATT-TACAGAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCCTCAATTGTA-A-AATTACCAAAATACCCTTGGTTTA
* *** * *
24116438 TAAAATCACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTA
1 TAAAATTACCAAAATACCCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTA
* *** * *
24116492 TAAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCC
1 TAAAATTACCAAAATACCCCTCAATTGTAAAATTACCAAAATACCC
24116538 CTGTAGGGTA
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
54 79 0.91
55 6 0.07
56 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCTCAATTGTAAAATTACCAAAATACCCTTGGTTTA
Found at i:24116516 original size:81 final size:81
Alignment explanation
Indices: 24116414--24116566 Score: 220
Period size: 81 Copynumber: 1.9 Consensus size: 81
24116404 CAATTTACAG
* **
24116414 AATTACCAAAATACCCTTGGTTT-ATAAAATCACCAAAATACCCCTGGT-TTGTAAAATTACTAA
1 AATTACCAAAATACCCATGGTTTGA-AAAATCACCAAAATACCCCT-GTAGGGTAAAATTACTAA
24116477 AATACCCTTTGTTTATAA
64 AATACCCTTTGTTTATAA
* * *
24116495 AATTACCAAAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGTAAAATTACTGAAA
1 AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
24116560 TACCCTT
66 TACCCTT
24116567 GTGGGGTAAA
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 61 0.95
82 1 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AATTACCAAAATACCCATGGTTTGAAAAATCACCAAAATACCCCTGTAGGGTAAAATTACTAAAA
TACCCTTTGTTTATAA
Found at i:24116550 original size:27 final size:27
Alignment explanation
Indices: 24116520--24116581 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
24116510 CATGGTTTGA
24116520 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
24116547 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
24116574 AAAATTAC
1 AAAATTAC
24116582 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:24116550 original size:54 final size:54
Alignment explanation
Indices: 24116414--24116564 Score: 162
Period size: 54 Copynumber: 2.8 Consensus size: 54
24116404 CAATTTACAG
* ** * * *
24116414 AATTACCAAAATACCCT-TGGTTTATAAAATCACCAAAATACCCCTGGTTTGTAA
1 AATTACTAAAATACCCTCT-GTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
24116468 AATTACTAAAATACCCTTTGTTTATAAAATTACCAAAATACCCATGGTTTGAAA
1 AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
* **
24116522 AATTACTAAAATACCC-CTGTAGGGTAAAATTACTGAAATACCC
1 AATTACTAAAATACCCTCTGT-GGATAAAATTACCAAAATACCC
24116565 TTGTGGGGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 3 0.04
54 81 0.95
55 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACTAAAATACCCTCTGTGGATAAAATTACCAAAATACCCATGGTTTGAAA
Found at i:24117234 original size:28 final size:28
Alignment explanation
Indices: 24117201--24117297 Score: 153
Period size: 28 Copynumber: 3.5 Consensus size: 28
24117191 GCGTAGATCA
24117201 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
24117229 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
24117257 CGAAATTACCCCTAAATAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
24117285 C--AATATACCCCTA
1 CGAAAT-TACCCCTA
24117298 GGGTTTAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 3 0.05
27 8 0.12
28 54 0.83
ACGTcount: A:0.45, C:0.26, G:0.08, T:0.21
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:24120104 original size:21 final size:21
Alignment explanation
Indices: 24120080--24120123 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
24120070 TATATCGTGG
24120080 CACCCTCAGCCTGTCTCGCGA
1 CACCCTCAGCCTGTCTCGCGA
** *
24120101 CACCCTCAGGTTGTCTCTCGA
1 CACCCTCAGCCTGTCTCGCGA
24120122 CA
1 CA
24120124 TTAAAGATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.43, G:0.18, T:0.23
Consensus pattern (21 bp):
CACCCTCAGCCTGTCTCGCGA
Found at i:24120903 original size:31 final size:31
Alignment explanation
Indices: 24120868--24120927 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
24120858 CCTTTTCATA
*
24120868 TTTCATATTTTATAACACTGGGCCGAAGCAT
1 TTTCATATTTCATAACACTGGGCCGAAGCAT
**
24120899 TTTCATATTTCATATTACTGGGCCGAAGC
1 TTTCATATTTCATAACACTGGGCCGAAGC
24120928 CTTTACTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCAT
Found at i:24121167 original size:24 final size:25
Alignment explanation
Indices: 24121140--24121222 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
24121130 CTGGAGGCCT
*
24121140 AGCCACTTTTAAT-AATTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
24121164 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
24121189 AGCCCTTTTAATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
24121214 AGCCCTTTT
1 AGCCCTTTT
24121223 CGGTAAACTA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.13
24 12 0.22
25 35 0.65
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:24121236 original size:26 final size:24
Alignment explanation
Indices: 24121156--24121247 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 24
24121146 TTTTAATAAT
24121156 TGGGGCAAAGCCCTTTTGATAAAC
1 TGGGGCAAAGCCCTTTTGATAAAC
*
24121180 TGGGGCAAAAGCCCTTTTAATAAAC
1 TGGGGC-AAAGCCCTTTTGATAAAC
*
24121205 TGGGGCAAAAGCCCTTTTCGGTAAAC
1 TGGGGC-AAAGCCCTTTT-GATAAAC
* *
24121231 TAGGGCATAGCCCTTTT
1 TGGGGCAAAGCCCTTTT
24121248 TGCACTTCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
24 6 0.10
25 45 0.74
26 10 0.16
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
TGGGGCAAAGCCCTTTTGATAAAC
Found at i:24121318 original size:20 final size:20
Alignment explanation
Indices: 24121295--24121361 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
24121285 TTATGAATAC
24121295 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24121315 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
24121335 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
24121355 ATCATGT
1 ATCATGT
24121362 ATATCAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:24121325 original size:40 final size:39
Alignment explanation
Indices: 24121281--24121361 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 39
24121271 CCCAACCCAA
24121281 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
*
24121321 TGCATATCATACATATCATGTGCATATCATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
24121361 T
1 T
24121362 ATATCAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 28 0.76
41 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:24121326 original size:11 final size:11
Alignment explanation
Indices: 24121295--24121350 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
24121285 TTATGAATAC
24121295 ATCATGTGCAT
1 ATCATGTGCAT
*
24121306 ATCA--TACAT
1 ATCATGTGCAT
24121315 ATCATGTGCAT
1 ATCATGTGCAT
*
24121326 ATCA--TACAT
1 ATCATGTGCAT
24121335 ATCATGTGCAT
1 ATCATGTGCAT
24121346 ATCAT
1 ATCAT
24121351 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:24121367 original size:9 final size:10
Alignment explanation
Indices: 24121295--24121367 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
24121285 TTATGAATAC
24121295 ATCATGTGCAT
1 ATCATGT-CAT
*
24121306 ATCAT-ACAT
1 ATCATGTCAT
24121315 ATCATGTGCAT
1 ATCATGT-CAT
*
24121326 ATCAT-ACAT
1 ATCATGTCAT
24121335 ATCATGTGCAT
1 ATCATGT-CAT
*
24121346 ATCATATCA-
1 ATCATGTCAT
24121355 ATCATGT-AT
1 ATCATGTCAT
24121364 ATCA
1 ATCA
24121368 AAACCCATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:24124369 original size:40 final size:40
Alignment explanation
Indices: 24124324--24124491 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
24124314 CGGAATATAA
24124324 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
24124364 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
24124404 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
24124444 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
24124484 CCGGATAT
1 CCGGATAT
24124492 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24140543 original size:24 final size:24
Alignment explanation
Indices: 24140511--24140571 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
24140501 AAAATCCAAT
* * *
24140511 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
24140535 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
24140559 GCACTATGTGTGC
1 GCACTATGTGTGC
24140572 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:24145718 original size:66 final size:68
Alignment explanation
Indices: 24145642--24145828 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
24145632 TAGTACCACT
*
24145642 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
24145704 CACG
65 CACG
24145708 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
24145773 ATCACG
63 ATCACG
24145779 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
24145829 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:24145753 original size:71 final size:71
Alignment explanation
Indices: 24145665--24145828 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24145655 CGATTTGTCT
24145665 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24145730 CTTTCA
66 CTTTCA
24145736 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24145801 CTTTCA
66 CTTTCA
24145807 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24145829 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24145866 original size:71 final size:70
Alignment explanation
Indices: 24145665--24145862 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
24145655 CGATTTGTCT
* * *
24145665 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
24145730 CTTTCA
65 CTTTCA
* * *
24145736 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
24145801 CTTTCA
65 CTTTCA
* *
24145807 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
24145863 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24153282 original size:66 final size:68
Alignment explanation
Indices: 24153206--24153392 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
24153196 TAGTACCACT
*
24153206 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
24153268 CACG
65 CACG
24153272 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
24153337 ATCACG
63 ATCACG
24153343 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
24153393 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:24153317 original size:71 final size:71
Alignment explanation
Indices: 24153229--24153392 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
24153219 CGATTTGTCT
24153229 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24153294 CTTTCA
66 CTTTCA
24153300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24153365 CTTTCA
66 CTTTCA
24153371 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24153393 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24153430 original size:71 final size:70
Alignment explanation
Indices: 24153229--24153426 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
24153219 CGATTTGTCT
* * *
24153229 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
24153294 CTTTCA
65 CTTTCA
* * *
24153300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
24153365 CTTTCA
65 CTTTCA
* *
24153371 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
24153427 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24156624 original size:20 final size:20
Alignment explanation
Indices: 24156572--24156628 Score: 93
Period size: 17 Copynumber: 3.0 Consensus size: 20
24156562 ATAAATATGG
24156572 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
24156592 -ATGTATG--ATGCACATGA
1 TATGTATGATATGCACATGA
24156609 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
24156629 GGTATCATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 10 0.29
18 7 0.21
19 7 0.21
20 10 0.29
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:24156703 original size:24 final size:24
Alignment explanation
Indices: 24156676--24156814 Score: 173
Period size: 24 Copynumber: 6.0 Consensus size: 24
24156666 GGAGGAAGTG
24156676 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
24156700 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
24156723 AAAA-GGCTTATG-CCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
24156744 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
24156767 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
24156791 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
24156815 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 4, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
20 3 0.03
21 8 0.08
22 26 0.25
23 14 0.13
24 43 0.41
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:24157039 original size:30 final size:31
Alignment explanation
Indices: 24157003--24157065 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
24156993 CGTTTACAGT
24157003 AAAGGCTTC-GCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
24157033 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
24157064 AA
1 AA
24157066 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 9 0.29
31 22 0.71
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:24159925 original size:27 final size:27
Alignment explanation
Indices: 24159866--24160023 Score: 230
Period size: 27 Copynumber: 5.9 Consensus size: 27
24159856 AAATACTTTG
*
24159866 GTTTATAAAATTACCAAAATA-CCCT-
1 GTTTGTAAAATTACCAAAATACCCCTA
*
24159891 GCTTTGTAAAATTACTAAAATACCCCTA
1 G-TTTGTAAAATTACCAAAATACCCCTA
24159919 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
*
24159946 GTTTGTAAAATTATCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
24159973 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * **
24160000 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
24160024 TCGACCTGTA
Statistics
Matches: 121, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
25 1 0.01
26 18 0.15
27 101 0.83
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Found at i:24160034 original size:81 final size:80
Alignment explanation
Indices: 24159871--24160077 Score: 229
Period size: 81 Copynumber: 2.6 Consensus size: 80
24159861 CTTTGGTTTA
* * * *
24159871 TAAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAA
1 TAAAATTATCAAAATACCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
* **
24159936 AATACCCCTAGTTTG
66 AATACCCCGAGCCTG
* *
24159951 TAAAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACT
1 TAAAATTATCAAAATA-CCCTGA-TTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACC
*
24160015 GAAATACCCTCGA-CCTG
64 AAAATACCC-CGAGCCTG
** * * *
24160032 TAAAATTATTGAAATACCCTCGACTTATAAAATTACCAAAGTACCC
1 TAAAATTATCAAAATACCCT-GATTTGTAAAATTACCAAAATACCC
24160078 TCGATTTATA
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
80 19 0.18
81 85 0.79
82 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.30
Consensus pattern (80 bp):
TAAAATTATCAAAATACCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAA
AATACCCCGAGCCTG
Found at i:24160086 original size:27 final size:27
Alignment explanation
Indices: 24159871--24160149 Score: 208
Period size: 27 Copynumber: 10.4 Consensus size: 27
24159861 CTTTGGTTTA
*
24159871 TAAAATTACCAAAATACCCT-GCTTTG
1 TAAAATTACCAAAATACCCTCGATTTG
* *
24159897 TAAAATTACTAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
*
24159924 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
* *
24159951 TAAAATTATCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTG
*
24159978 TAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAATACCCTC-GATTTG
* ** **
24160005 TGAAATTACTGAAATACCCTCGACCTG
1 TAAAATTACCAAAATACCCTCGATTTG
*** * *
24160032 TAAAATTATTGAAATACCCTCGACTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* *
24160059 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
* **** *
24160086 TAGAATTACCGTTTTACCCTCAATTTG
1 TAAAATTACCAAAATACCCTCGATTTG
**** *
24160113 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTG
*
24160140 TAGAATTACC
1 TAAAATTACC
24160150 GTTTTACCCT
Statistics
Matches: 216, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
26 18 0.08
27 196 0.91
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTG
Found at i:24160150 original size:27 final size:27
Alignment explanation
Indices: 24160073--24160473 Score: 470
Period size: 27 Copynumber: 14.9 Consensus size: 27
24160063 ATTACCAAAG
*
24160073 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* ** *
24160100 TACCCTCAATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24160127 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
24160154 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
* * *
24160181 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24160208 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* * *
24160235 TACCC-CTGATTTACATAATTATCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
24160262 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
24160289 TACCCACAATTTACATAATTA-CGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24160315 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
*
24160342 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
24160369 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
24160396 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
24160423 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
24160450 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTACAGAATTACCG
24160474 AAATACCCTC
Statistics
Matches: 325, Mismatches: 42, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.00
26 24 0.07
27 297 0.91
28 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:24160480 original size:27 final size:27
Alignment explanation
Indices: 24160046--24160525 Score: 305
Period size: 27 Copynumber: 17.8 Consensus size: 27
24160036 ATTATTGAAA
* * * **
24160046 TACCCTCGACTTATAAAATTACCAAAG
1 TACCCTCGATTTACAAAATTACCGATT
* * *
24160073 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* ** *
24160100 TACCCTCAATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* * *
24160127 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* *
24160154 TACCCTC-AGTTTACAGAATTA-CTATTT
1 TACCCTCGA-TTTACAAAATTACCGA-TT
* * *
24160181 TACCCTTGATTTATAGAATTACC-ATTT
1 TACCCTCGATTTACAAAATTACCGA-TT
* * *
24160208 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAAAATTACCGATT
* *
24160235 TACCC-CTGATTTACATAATTATC-ATTT
1 TACCCTC-GATTTACAAAATTACCGA-TT
* * *
24160262 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* * * *
24160289 TACCCACAATTTACATAATTA-CGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* * *
24160315 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAAAATTACCGATT
* * *
24160342 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* *
24160369 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGATT
* * *
24160396 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCGA-TT
* * * *
24160423 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGATT
**
24160450 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCGATT
* ** * **
24160477 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCGATT
*
24160504 TACCC-CTGATTTACAAAGTTAC
1 TACCCTC-GATTTACAAAATTAC
24160526 AGAAATACCC
Statistics
Matches: 378, Mismatches: 60, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
25 1 0.00
26 27 0.07
27 346 0.92
28 4 0.01
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGATT
Found at i:24160531 original size:27 final size:28
Alignment explanation
Indices: 24160452--24160535 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 28
24160442 TACTGTTTTA
*
24160452 CCCTCGATTTACAAAATTACCGAAATA-
1 CCCTCGATTTACAAAATTACAGAAATAC
* **
24160479 CCCTCAATTTGTAAAATTACCA-AAATAC
1 CCCTCGATTTACAAAATTA-CAGAAATAC
*
24160507 CCCT-GATTTACAAAGTTACAGAAATAC
1 CCCTCGATTTACAAAATTACAGAAATAC
24160534 CC
1 CC
24160536 TTGACTTTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.04
27 39 0.85
28 5 0.11
ACGTcount: A:0.40, C:0.26, G:0.07, T:0.26
Consensus pattern (28 bp):
CCCTCGATTTACAAAATTACAGAAATAC
Found at i:24160590 original size:27 final size:26
Alignment explanation
Indices: 24160543--24160598 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
24160533 CCCTTGACTT
*
24160543 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
24160569 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
24160596 TTT
1 TTT
24160599 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:24160716 original size:27 final size:27
Alignment explanation
Indices: 24160652--24160716 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
24160642 ACCCCTAAAA
*
24160652 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
24160679 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
24160706 GGTAAAATGAC
1 GGTAAAATGAC
24160717 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:24161900 original size:25 final size:25
Alignment explanation
Indices: 24161871--24161918 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24161861 TTATAATATG
* * *
24161871 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
24161896 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24161919 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:24161987 original size:20 final size:20
Alignment explanation
Indices: 24161962--24162020 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
24161952 TAAATATGGT
24161962 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
24161982 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
24162002 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
24162021 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:24162098 original size:24 final size:24
Alignment explanation
Indices: 24162071--24162213 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
24162061 GAGGAAGTGA
24162071 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
24162095 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
24162119 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
24162142 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
24162166 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
24162190 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
24162214 ATGATAAAGC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 77 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:24162164 original size:47 final size:47
Alignment explanation
Indices: 24162071--24162213 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
24162061 GAGGAAGTGA
24162071 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
24162119 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
24162166 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
24162214 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 43 0.49
48 34 0.39
49 11 0.12
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:24162187 original size:71 final size:72
Alignment explanation
Indices: 24162071--24162214 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
24162061 GAGGAAGTGA
*
24162071 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
24162134 CCAGTTAT
65 CCAGTTAT
** * *
24162142 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
24162207 CAGTTAT
66 CAGTTAT
24162214 A
1 A
24162215 TGATAAAGCA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 54 0.82
72 12 0.18
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:24162440 original size:31 final size:31
Alignment explanation
Indices: 24162405--24162468 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
24162395 CGTTTACAGT
24162405 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
24162436 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
24162467 AA
1 AA
24162469 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:24193031 original size:26 final size:26
Alignment explanation
Indices: 24193002--24193224 Score: 169
Period size: 27 Copynumber: 8.4 Consensus size: 26
24192992 ATCCATGTTT
** *
24193002 AAAATACTTTGGTTTATAAAATTACC
1 AAAATACCCTGGTTTGTAAAATTACC
* *
24193028 AAAATACCCTGCTTTGTAAAATTACT
1 AAAATACCCTGGTTTGTAAAATTACC
*
24193054 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATA-CCCTGGTTTGTAAAATTACC
* **
24193081 AAAATACCCCTAGTTTGTAAAATTATT
1 AAAATA-CCCTGGTTTGTAAAATTACC
*
24193108 AAAATACCCCTAG-TTGTAAAATTACC
1 AAAATA-CCCTGGTTTGTAAAATTACC
** * *
24193134 AAAATACCCCTAATTTGTGAAATTACT
1 AAAATA-CCCTGGTTTGTAAAATTACC
* *** **
24193161 GAAATACCCTCGACCTGTAAAATTATT
1 AAAATACCCT-GGTTTGTAAAATTACC
* **
24193188 GAAATACCCTCGACTTGTAAAATTACC
1 AAAATACCCT-GGTTTGTAAAATTACC
*
24193215 AAAGTACCCT
1 AAAATACCCT
24193225 CGATTTATAG
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
26 54 0.32
27 114 0.68
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAAATACCCTGGTTTGTAAAATTACC
Found at i:24193072 original size:27 final size:27
Alignment explanation
Indices: 24193013--24193169 Score: 212
Period size: 27 Copynumber: 5.9 Consensus size: 27
24193003 AAATACTTTG
*
24193013 GTTTATAAAATTACCAAAATA-CCCT-
1 GTTTGTAAAATTACCAAAATACCCCTA
*
24193038 GCTTTGTAAAATTACTAAAATACCCCTA
1 G-TTTGTAAAATTACCAAAATACCCCTA
24193066 GTTTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
**
24193093 GTTTGTAAAATTATTAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
24193120 G-TTGTAAAATTACCAAAATACCCCTA
1 GTTTGTAAAATTACCAAAATACCCCTA
* * **
24193146 ATTTGTGAAATTACTGAAATACCC
1 GTTTGTAAAATTACCAAAATACCC
24193170 TCGACCTGTA
Statistics
Matches: 117, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
25 1 0.01
26 41 0.35
27 74 0.63
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
GTTTGTAAAATTACCAAAATACCCCTA
Done.