Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 87 of 770
Found at i:25407801 original size:25 final size:24
Alignment explanation
Indices: 25407759--25407806 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
25407749 ATATATAAAC
* * *
25407759 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
25407784 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
25407807 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:25410286 original size:29 final size:29
Alignment explanation
Indices: 25410253--25410326 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
25410243 GTGACGAGAT
25410253 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
25410282 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25410311 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25410327 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:25410342 original size:29 final size:29
Alignment explanation
Indices: 25410310--25410385 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
25410300 CTGGAAATAT
* *
25410310 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
25410339 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
25410368 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
25410386 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:25410353 original size:58 final size:58
Alignment explanation
Indices: 25410253--25410385 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
25410243 GTGACGAGAT
* * * * * *
25410253 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
25410311 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
25410369 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
25410386 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:25418158 original size:29 final size:29
Alignment explanation
Indices: 25418125--25418198 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
25418115 GTGACGAGAT
25418125 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
25418154 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25418183 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
25418199 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:25418214 original size:29 final size:29
Alignment explanation
Indices: 25418182--25418257 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
25418172 CTGGAAATAT
* *
25418182 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
25418211 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
25418240 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
25418258 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:25418225 original size:58 final size:58
Alignment explanation
Indices: 25418125--25418257 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
25418115 GTGACGAGAT
* * * * * *
25418125 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
25418183 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
25418241 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
25418258 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:25424100 original size:29 final size:29
Alignment explanation
Indices: 25424068--25424202 Score: 157
Period size: 29 Copynumber: 4.7 Consensus size: 29
25424058 ATACCCTTCG
** * *
25424068 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
25424097 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
25424126 AGCAT-GCACACTTAGTGCC-TATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
25424154 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
25424183 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
25424203 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
28 25 0.27
29 68 0.72
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:25424164 original size:57 final size:58
Alignment explanation
Indices: 25424072--25424201 Score: 172
Period size: 57 Copynumber: 2.3 Consensus size: 58
25424062 CCTTCGAGCT
** * ** * *
25424072 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* *
25424130 TGCACACTTAGTGCC-TATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
25424187 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
25424202 AATCTCGTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
57 50 0.81
58 12 0.19
ACGTcount: A:0.24, C:0.32, G:0.15, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:25427128 original size:71 final size:71
Alignment explanation
Indices: 25427042--25427205 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
25427032 CGATTTGTCT
25427042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25427107 CTTTCA
66 CTTTCA
25427113 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25427178 CTTTCA
66 CTTTCA
25427184 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
25427206 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:25427243 original size:71 final size:70
Alignment explanation
Indices: 25427042--25427239 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
25427032 CGATTTGTCT
* * * *
25427042 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25427107 CTTTCA
65 CTTTCA
* * * *
25427113 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25427178 CTTTCA
65 CTTTCA
* *
25427184 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
25427240 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:25433911 original size:9 final size:10
Alignment explanation
Indices: 25433887--25433932 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
25433877 TTTTCTTCTA
25433887 ATTTTTAATG
1 ATTTTTAATG
25433897 ATTTTTAATG
1 ATTTTTAATG
25433907 ATTTTGTACA--
1 ATTTT-TA-ATG
25433917 ATTTTTAATG
1 ATTTTTAATG
25433927 ATTTTT
1 ATTTTT
25433933 CAAAGTTGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
8 1 0.03
9 2 0.06
10 26 0.81
11 2 0.06
12 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.61
Consensus pattern (10 bp):
ATTTTTAATG
Found at i:25434511 original size:71 final size:71
Alignment explanation
Indices: 25434425--25434586 Score: 324
Period size: 71 Copynumber: 2.3 Consensus size: 71
25434415 CGATTTGTCT
25434425 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25434490 CTTTCA
66 CTTTCA
25434496 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
25434561 CTTTCA
66 CTTTCA
25434567 CGTAGCTCTCTTGTCTACAT
1 CGTAGCTCTCTTGTCTACAT
25434587 AGGATACATC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:25434626 original size:71 final size:70
Alignment explanation
Indices: 25434425--25434622 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
25434415 CGATTTGTCT
* * * * *
25434425 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTATACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25434490 CTTTCA
65 CTTTCA
* * * * *
25434496 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTATACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
25434561 CTTTCA
65 CTTTCA
* *
25434567 CGTAGCTCTCTTGTCTACATAGG-ATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACAT-GGTATACATACTTCGAATCACACATGCGACCTAGCTAC
25434623 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
71 94 0.79
72 2 0.02
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTATACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:25439839 original size:8 final size:8
Alignment explanation
Indices: 25439828--25439864 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
25439818 CTAGATCGAC
25439828 AAAAGCCG
1 AAAAGCCG
25439836 AAAAGCCG
1 AAAAGCCG
*
25439844 AAATGCCG
1 AAAAGCCG
*
25439852 AAAAGCCA
1 AAAAGCCG
25439860 AAAAG
1 AAAAG
25439865 TCGGCATTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.54, C:0.22, G:0.22, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:25443196 original size:2 final size:2
Alignment explanation
Indices: 25443189--25443217 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25443179 TCATGACATG
25443189 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25443218 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25444122 original size:20 final size:20
Alignment explanation
Indices: 25444079--25444123 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
25444069 ACTGTTTTGT
25444079 TATGGGCCAATTGTATTGAA
1 TATGGGCCAATTGTATTGAA
*
25444099 -ATGGGCCCAATTGTGTT-AA
1 TATGGG-CCAATTGTATTGAA
25444118 TATGGG
1 TATGGG
25444124 AAAGGCCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (20 bp):
TATGGGCCAATTGTATTGAA
Found at i:25449436 original size:41 final size:41
Alignment explanation
Indices: 25449379--25449473 Score: 190
Period size: 41 Copynumber: 2.3 Consensus size: 41
25449369 AATAATACTT
25449379 TGATTTGGCTACGTGGTATAGGTACCCGAGATAAGTTACCC
1 TGATTTGGCTACGTGGTATAGGTACCCGAGATAAGTTACCC
25449420 TGATTTGGCTACGTGGTATAGGTACCCGAGATAAGTTACCC
1 TGATTTGGCTACGTGGTATAGGTACCCGAGATAAGTTACCC
25449461 TGATTTGGCTACG
1 TGATTTGGCTACG
25449474 GGCCATGGTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (41 bp):
TGATTTGGCTACGTGGTATAGGTACCCGAGATAAGTTACCC
Found at i:25453709 original size:27 final size:27
Alignment explanation
Indices: 25453669--25453722 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
25453659 TCATACAACC
* *
25453669 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
25453696 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
25453723 TCACACGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:25456262 original size:28 final size:28
Alignment explanation
Indices: 25456197--25456297 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
25456187 ATAGTGAATC
*
25456197 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
25456226 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25456254 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
25456284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25456298 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25464219 original size:28 final size:28
Alignment explanation
Indices: 25464154--25464254 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
25464144 ATAGTGAATC
*
25464154 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
25464183 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25464211 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
25464241 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25464255 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25471844 original size:27 final size:27
Alignment explanation
Indices: 25471804--25471857 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
25471794 TTACACAACC
* *
25471804 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
25471831 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
25471858 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:25472890 original size:31 final size:31
Alignment explanation
Indices: 25472847--25472914 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
25472837 TCGCCATTTG
25472847 GCTTGTCGCCTGTGTTAGATTGGTTTAGGTTT
1 GCTT-TCGCCTGTGTTAGATTGGTTTAGGTTT
25472879 GCTTTCGCCTGTGTTAGATTGGTTTAGGTTT
1 GCTTTCGCCTGTGTTAGATTGGTTTAGGTTT
*
25472910 TCTTT
1 GCTTT
25472915 TTATGGTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.09, C:0.13, G:0.28, T:0.50
Consensus pattern (31 bp):
GCTTTCGCCTGTGTTAGATTGGTTTAGGTTT
Found at i:25475614 original size:39 final size:39
Alignment explanation
Indices: 25475560--25475712 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
25475550 GAATGTTCGA
*
25475560 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
25475599 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
25475638 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
25475677 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
25475713 GGTTACCATA
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:25475728 original size:40 final size:39
Alignment explanation
Indices: 25475561--25475742 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
25475551 AATGTTCGAG
* *
25475561 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
25475600 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
25475639 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
25475678 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
25475718 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
25475743 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:25482631 original size:39 final size:39
Alignment explanation
Indices: 25482538--25482689 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
25482528 GAATGTTCGA
*
25482538 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
25482576 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
25482615 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
25482654 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
25482690 GATTACCATA
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 34 0.32
39 54 0.51
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:25482633 original size:77 final size:79
Alignment explanation
Indices: 25482539--25482689 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
25482529 AATGTTCGAG
25482539 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGC-AATTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
25482602 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* *
25482616 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
25482681 ATTTGTGCG
66 AATTGTGCG
25482690 GATTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 33 0.48
78 19 0.28
79 17 0.25
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:25487335 original size:43 final size:43
Alignment explanation
Indices: 25487264--25487346 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
25487254 GAGATATGTG
* *
25487264 GCATTCGAGCTCGTTGAGAAGTCTGAGTTTATTATGGATGCGA
1 GCATCCGAGCTCGTTGAGAAGTCTGAGTTCATTATGGATGCGA
*
25487307 GCATCCGAGCTCGTTGAGAGGT-TCGAGTTCATTATGGATG
1 GCATCCGAGCTCGTTGAGAAGTCT-GAGTTCATTATGGATG
25487347 TGTTACACGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAAGTCTGAGTTCATTATGGATGCGA
Found at i:25494153 original size:18 final size:18
Alignment explanation
Indices: 25494130--25494171 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
25494120 TAAAAATGAG
*
25494130 AGAAAAGAATAAAGA-TCA
1 AGAAAACAA-AAAGAGTCA
*
25494148 AGAAAACAAAAAGAGTGA
1 AGAAAACAAAAAGAGTCA
25494166 AGAAAA
1 AGAAAA
25494172 AATGAGTGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.69, C:0.05, G:0.19, T:0.07
Consensus pattern (18 bp):
AGAAAACAAAAAGAGTCA
Found at i:25498442 original size:20 final size:20
Alignment explanation
Indices: 25498408--25498449 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
25498398 TCCCATTACC
**
25498408 AAAACATTTTGACCAACCGT
1 AAAACATTTCAACCAACCGT
*
25498428 AAAACATTTCAACCAATCGT
1 AAAACATTTCAACCAACCGT
25498448 AA
1 AA
25498450 TTTGTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.24, G:0.07, T:0.24
Consensus pattern (20 bp):
AAAACATTTCAACCAACCGT
Found at i:25499523 original size:34 final size:34
Alignment explanation
Indices: 25499485--25499553 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
25499475 AACACTTTGC
25499485 ATTCATTTCACAAACATCATAGCATCATAGTCAA
1 ATTCATTTCACAAACATCATAGCATCATAGTCAA
25499519 ATTCATTTCACAAACATCATAGCATCATAGTCAA
1 ATTCATTTCACAAACATCATAGCATCATAGTCAA
25499553 A
1 A
25499554 CATCAAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (34 bp):
ATTCATTTCACAAACATCATAGCATCATAGTCAA
Found at i:25520615 original size:11 final size:11
Alignment explanation
Indices: 25520599--25520624 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
25520589 AGAATTATCA
25520599 TTTATTTTTAT
1 TTTATTTTTAT
25520610 TTTATTTTTAT
1 TTTATTTTTAT
25520621 TTTA
1 TTTA
25520625 AGTAATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:25529601 original size:69 final size:69
Alignment explanation
Indices: 25529490--25529628 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
25529480 CAAGACTCTA
*
25529490 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
25529555 CCTG
66 CCTG
25529559 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
25529624 CCTG
66 CCTG
25529628 T
1 T
25529629 TTTTCCTATC
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:25532518 original size:188 final size:188
Alignment explanation
Indices: 25532201--25532767 Score: 1073
Period size: 188 Copynumber: 3.0 Consensus size: 188
25532191 CACGAACATC
*
25532201 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCTC-ACACCCACAACAGAAATCT
1 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTC-CGACACCCACAGCAGAAATCT
* *
25532265 TTCTAATGACCATCTCATTCCAAACATGAAGTTAGACAACGAGTGAAAGAGCTTTAACCATACTA
65 TTCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTA
*
25532330 AATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTTATATGCAAAT
130 AATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
25532389 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCCGACACCCACAGCAGAAATCTT
1 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCCGACACCCACAGCAGAAATCTT
25532454 TCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTAA
66 TCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTAA
25532519 ATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
131 ATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
*
25532577 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCTGACACCCACAGCAGAAATCTT
1 AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCCGACACCCACAGCAGAAATCTT
25532642 TCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTAA
66 TCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTAA
25532707 ATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
131 ATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
25532765 AAC
1 AAC
25532768 CTGGCAATAC
Statistics
Matches: 373, Mismatches: 5, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
187 1 0.00
188 372 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (188 bp):
AACTTTTAGTTGTGGTGAGCAGCTCACATAGAAGTAATTACTCCGACACCCACAGCAGAAATCTT
TCTAATGACCATCTCATTCCAAACATGAAGTTAGACAATGAGTGAAAGGGCTTTAACCATACTAA
ATTTTTAAAGAGAAATTTTCCTTAGGAGAGAATAAAGTGAAGAATGTGATATGCAAAT
Found at i:25534508 original size:44 final size:44
Alignment explanation
Indices: 25534445--25534534 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
25534435 AGAGAAACAA
25534445 GATAGTCTCTCGAAGCCTATTTTACGGAGTTTAAAAAGGTGTAT
1 GATAGTCTCTCGAAGCCTATTTTACGGAGTTTAAAAAGGTGTAT
25534489 GATAGTCTCTCGAAGCCTATTTTACGGAGTTTAAAAAGGTGTAT
1 GATAGTCTCTCGAAGCCTATTTTACGGAGTTTAAAAAGGTGTAT
25534533 GA
1 GA
25534535 AGAGATTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (44 bp):
GATAGTCTCTCGAAGCCTATTTTACGGAGTTTAAAAAGGTGTAT
Found at i:25545886 original size:28 final size:29
Alignment explanation
Indices: 25545830--25545900 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
25545820 GATGGTTTAG
*
25545830 AATATTATAAAATTATTAAAAAATATAAA
1 AATATTATAAAATTATTAAAAAAGATAAA
* * *
25545859 TA-ATTATAAAATTATTTAAAAAGGTAAA
1 AATATTATAAAATTATTAAAAAAGATAAA
25545887 AATATTA-AAAATTA
1 AATATTATAAAATTA
25545901 AAAATTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 31 0.86
29 5 0.14
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (29 bp):
AATATTATAAAATTATTAAAAAAGATAAA
Found at i:25545896 original size:17 final size:17
Alignment explanation
Indices: 25545866--25545914 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
25545856 AAATAATTAT
25545866 AAAATTATTTAAAAAGGTA
1 AAAATTA-TTAAAAA-GTA
*
25545885 AAAA-TATTAAAAATTA
1 AAAATTATTAAAAAGTA
25545901 AAAATTATTAAAAA
1 AAAATTATTAAAAA
25545915 ATTGTCAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 6 0.21
17 16 0.57
18 2 0.07
19 4 0.14
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (17 bp):
AAAATTATTAAAAAGTA
Found at i:25545917 original size:18 final size:18
Alignment explanation
Indices: 25545844--25545917 Score: 73
Period size: 18 Copynumber: 4.2 Consensus size: 18
25545834 TTATAAAATT
* *
25545844 ATTAAAAAATA-TAAATA
1 ATTAAAAATTATTAAAAA
25545861 ATTATAAAATTATTTAAAAA
1 ATTA-AAAATTA-TTAAAAA
**
25545881 GGTAAAAA-TATT-AAAA
1 ATTAAAAATTATTAAAAA
25545897 ATTAAAAATTATTAAAAA
1 ATTAAAAATTATTAAAAA
25545915 ATT
1 ATT
25545918 GTCAAAATAG
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
16 10 0.22
17 10 0.22
18 15 0.33
19 4 0.09
20 7 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
ATTAAAAATTATTAAAAA
Found at i:25545926 original size:36 final size:36
Alignment explanation
Indices: 25545848--25545915 Score: 104
Period size: 35 Copynumber: 1.9 Consensus size: 36
25545838 AAAATTATTA
*
25545848 AAAAATATAAATAATTATAAAATTATTTAAAAAGGT
1 AAAAATATAAATAATTATAAAATTATTAAAAAAGGT
25545884 AAAAATATTAAA-AATTA-AAAATTATTAAAAAA
1 AAAAATA-TAAATAATTATAAAATTATTAAAAAA
25545916 TTGTCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 14 0.47
36 12 0.40
37 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (36 bp):
AAAAATATAAATAATTATAAAATTATTAAAAAAGGT
Found at i:25546310 original size:19 final size:19
Alignment explanation
Indices: 25546274--25546321 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
25546264 ATTTTCAGTT
* **
25546274 TTTTACAATTTTTTAATAA
1 TTTTAAAATTTTAAAATAA
* *
25546293 TTTTATAATTTTAAAATAT
1 TTTTAAAATTTTAAAATAA
25546312 TTTTAAAATT
1 TTTTAAAATT
25546322 CTTTTGTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTAAAATTTTAAAATAA
Found at i:25546351 original size:19 final size:18
Alignment explanation
Indices: 25546329--25546394 Score: 55
Period size: 19 Copynumber: 3.6 Consensus size: 18
25546319 ATTCTTTTGT
25546329 TTTTTATGATTTTTTAAAA
1 TTTTTAT-ATTTTTTAAAA
*
25546348 -TTTTA-ATTTTTTAGAA
1 TTTTTATATTTTTTAAAA
* **
25546364 TTATTATAATTTTTTACCA
1 TTTTTAT-ATTTTTTAAAA
25546383 TTTTTAATATTT
1 TTTTT-ATATTT
25546395 AATGTTTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
16 10 0.26
17 4 0.11
18 5 0.13
19 17 0.45
20 2 0.05
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTTATATTTTTTAAAA
Found at i:25546374 original size:25 final size:26
Alignment explanation
Indices: 25546328--25546376 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
25546318 AATTCTTTTG
* *
25546328 TTTTTTATGATTTTTTAAAATTTTAA
1 TTTTTTATGAATTATTAAAATTTTAA
*
25546354 TTTTTTA-GAATTATTATAATTTT
1 TTTTTTATGAATTATTAAAATTTT
25546377 TTACCATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTTTTATGAATTATTAAAATTTTAA
Found at i:25546431 original size:33 final size:34
Alignment explanation
Indices: 25546367--25546433 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
25546357 TTTAGAATTA
* *
25546367 TTATAATTTTTTACCATTTTTAATATTTAATGTT
1 TTATAATTTTTTACCATTTATAATATATAATGTT
*
25546401 TTATTATTTTTTACCATTTAT-ATATATAATGTT
1 TTATAATTTTTTACCATTTATAATATATAATGTT
25546434 CTGAACCACA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 11 0.37
34 19 0.63
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (34 bp):
TTATAATTTTTTACCATTTATAATATATAATGTT
Found at i:25560692 original size:13 final size:14
Alignment explanation
Indices: 25560668--25560696 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
25560658 GCAAATTAGA
25560668 AAAAGAAAGAAAAG
1 AAAAGAAAGAAAAG
25560682 AAAAG-AAGAAAAG
1 AAAAGAAAGAAAAG
25560695 AA
1 AA
25560697 CACGCGGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAAAG
Found at i:25565043 original size:40 final size:40
Alignment explanation
Indices: 25564960--25565179 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
25564950 ACCCAAGTAT
** * *
25564960 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
25564998 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
25565038 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
25565078 CTTCGGGTCTCAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
25565118 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
25565158 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
25565180 CATTCGAATA
Statistics
Matches: 154, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 125 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:25568817 original size:17 final size:18
Alignment explanation
Indices: 25568781--25568816 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
25568771 ACCTATTTAC
25568781 ATAATAAAAAATATTAAA
1 ATAATAAAAAATATTAAA
25568799 ATAA-AAAAAATAATTAAA
1 ATAATAAAAAAT-ATTAAA
25568817 TTTAACATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
ATAATAAAAAATATTAAA
Found at i:25593474 original size:10 final size:10
Alignment explanation
Indices: 25593459--25593489 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
25593449 CTGCTGGAAT
25593459 TGAAGAGAAA
1 TGAAGAGAAA
25593469 TGAAGAGAAA
1 TGAAGAGAAA
25593479 TGAAGAGAAA
1 TGAAGAGAAA
25593489 T
1 T
25593490 CTAGATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.29, T:0.13
Consensus pattern (10 bp):
TGAAGAGAAA
Found at i:25595297 original size:9 final size:9
Alignment explanation
Indices: 25595257--25595306 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
25595247 TAATTATTAC
25595257 TAAAATATAA
1 TAAAATA-AA
*
25595267 TATAAT-AA
1 TAAAATAAA
*
25595275 TATAAA-ACA
1 TA-AAATAAA
25595284 TAAAATAAA
1 TAAAATAAA
25595293 TAAAATAAA
1 TAAAATAAA
25595302 TAAAA
1 TAAAA
25595307 GAAAACAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
8 7 0.21
9 21 0.64
10 5 0.15
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAATAAA
Found at i:25599171 original size:27 final size:27
Alignment explanation
Indices: 25599098--25599279 Score: 233
Period size: 27 Copynumber: 6.8 Consensus size: 27
25599088 ATTACCAAAG
*
25599098 TACCC-CGATTTACAGAATTACCGTTC
1 TACCCTCGATTTACAGAATTACCGTTT
* *
25599124 TACCCTCGA-TTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
25599150 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
25599177 TACCCTCGATTTACAGAATTGCCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
25599204 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
25599231 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
25599258 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
25599280 TAAAATACCC
Statistics
Matches: 139, Mismatches: 15, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
26 28 0.20
27 111 0.80
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:25599288 original size:27 final size:27
Alignment explanation
Indices: 25599239--25599369 Score: 104
Period size: 27 Copynumber: 4.9 Consensus size: 27
25599229 TTTACCCTTG
* ***
25599239 ATTTACAGAATTACTATTTTACCCTCA
1 ATTTACAAAATTACTAAAATACCCTCA
**
25599266 ATTTACAAAATTACTAAAATACCCTTG
1 ATTTACAAAATTACTAAAATACCCTCA
* *
25599293 GTTTACAAAATTACCAAAATACCCTCA
1 ATTTACAAAATTACTAAAATACCCTCA
* * * *
25599320 A-TCAGTAAAATTACCAAAATATCCT-A
1 ATTTA-CAAAATTACTAAAATACCCTCA
* **
25599346 GTTTGTAAAATTACTAAAATACCC
1 ATTTACAAAATTACTAAAATACCC
25599370 CTGGTTTGTA
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
26 20 0.24
27 63 0.76
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.32
Consensus pattern (27 bp):
ATTTACAAAATTACTAAAATACCCTCA
Found at i:25599289 original size:81 final size:81
Alignment explanation
Indices: 25599124--25599308 Score: 201
Period size: 81 Copynumber: 2.3 Consensus size: 81
25599114 ATTACCGTTC
* * * *
25599124 TACCCTCGA-TTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
* * ****
25599188 TACAGAATTGCCGTTT
66 TACAAAATTACCAAAA
** * *
25599204 TACCCTTGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTATTTTACCCTCAATT
1 TACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
*
25599269 TACAAAATTACTAAAA
66 TACAAAATTACCAAAA
* * *
25599285 TACCCTTGGTTTACAAAATTACCA
1 TACCCTTGATTTATAGAATTACCA
25599309 AAATACCCTC
Statistics
Matches: 84, Mismatches: 20, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
80 8 0.10
81 76 0.90
ACGTcount: A:0.31, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTTGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
TACAAAATTACCAAAA
Found at i:25599316 original size:54 final size:54
Alignment explanation
Indices: 25599231--25599588 Score: 222
Period size: 54 Copynumber: 6.6 Consensus size: 54
25599221 ATTACTGTTT
* * * *** ** *
25599231 TACCCTTGATTTACAGAATTACTATTTTACCCTCAATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
**
25599285 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* * ** * ** * *
25599339 TATCC-TAGTTTGTAAAATTACTAAAATACCC-CTGGTTTGTAAAATTATCGAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAA
* *** ** *
25599392 TAACCTCAATTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAA
*** * * *
25599446 TACCAC-TGGTTTGTGAAATTACCGAAATACCTTTAATTTGTAAAATTACCAAAA
1 TACC-CTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
* * * * * * ***
25599500 TACCCCTGATTTACAAAGTTA-CAGAAATACCCTGGAGTTTCTAAAAATTATGGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAATACCCT-CAATTTGT-AAAATTACCAAAA
* **
25599556 TACCATTGGTTTACAAAATTACTGAAATACCCT
1 TACCCTTGGTTTACAAAATTACCAAAATACCCT
25599589 TGGTTTGTAG
Statistics
Matches: 238, Mismatches: 57, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
52 1 0.00
53 42 0.18
54 153 0.64
55 6 0.03
56 36 0.15
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAA
Found at i:25599384 original size:27 final size:27
Alignment explanation
Indices: 25599272--25599507 Score: 217
Period size: 27 Copynumber: 8.8 Consensus size: 27
25599262 CTCAATTTAC
* * **
25599272 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
** **
25599299 AAAATTACCAAAATA-CCCTCAATCAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* *
25599326 AAAATTACCAAAATA-TCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
25599352 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * **
25599379 AAAATTATCGAAATA-ACCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
*
25599406 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
25599433 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * ** **
25599460 GAAATTACCGAAATACCTTTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
25599487 AAAATTACCAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
25599508 ATTTACAAAG
Statistics
Matches: 167, Mismatches: 38, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 24 0.14
27 140 0.84
28 3 0.02
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:25599465 original size:81 final size:80
Alignment explanation
Indices: 25599272--25599506 Score: 321
Period size: 81 Copynumber: 2.9 Consensus size: 80
25599262 CTCAATTTAC
** * * **
25599272 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATAACCTCAATTTGTAAAATTACCAA
*
25599337 AATA-TCCTAGTTTGT
65 AATACCCCTAGTTTGT
*
25599352 AAAATTACTAAAATACCCCTGGTTTGTAAAATTATCGAAATAACCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAATAACCTCAATTTGTAAAATTACCAA
25599417 AATACCCCTAGTTTGT
65 AATACCCCTAGTTTGT
* * *
25599433 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAAT-ACCTTTAATTTGTAAAATTACCA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATAACC-TCAATTTGTAAAATTACCA
25599497 AAATACCCCT
64 AAATACCCCT
25599507 GATTTACAAA
Statistics
Matches: 139, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 63 0.45
81 76 0.55
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATAACCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTTGT
Found at i:25599528 original size:81 final size:79
Alignment explanation
Indices: 25599272--25599534 Score: 309
Period size: 81 Copynumber: 3.3 Consensus size: 79
25599262 CTCAATTTAC
** * **
25599272 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATA-CCTCAATTTGTAAAATTACCAA
* *
25599337 AATA-TCCTAGTTTGT
64 AATACCCCTAGATTGT
*
25599352 AAAATTACTAAAATACCCCTGGTTTGTAAAATTATCGAAATAACCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCGAAAT-ACCTCAATTTGTAAAATTACCAA
*
25599417 AATACCCCTAGTTTGT
64 AATACCCCTAGATTGT
* * *
25599433 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCTTTAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACC-TCAATTTGTAAAATTACCAA
25599498 AATACCCCT-GATT-T
64 AATACCCCTAGATTGT
25599512 ACAAAGTTAC-AGAAATACCCTGG
1 A-AAA-TTACTA-AAATACCCTGG
25599535 AGTTTCTAAA
Statistics
Matches: 163, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
79 2 0.01
80 73 0.45
81 88 0.54
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (79 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCTCAATTTGTAAAATTACCAAAA
TACCCCTAGATTGT
Found at i:25599582 original size:27 final size:27
Alignment explanation
Indices: 25599543--25599594 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
25599533 GGAGTTTCTA
25599543 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
25599570 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
25599595 GTAGATTTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:25599739 original size:27 final size:27
Alignment explanation
Indices: 25599648--25599739 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
25599638 ACCCCTATTA
*
25599648 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
25599675 GGTAAAGA-GACCGTAAAGCCCTTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* * *
25599702 GGTAAAGTGACTGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
25599729 GGTAAAATGAC
1 GGTAAAATGAC
25599740 GAATATGCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:25600567 original size:26 final size:26
Alignment explanation
Indices: 25600538--25600673 Score: 164
Period size: 26 Copynumber: 5.2 Consensus size: 26
25600528 GAGGAAGTGC
**
25600538 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
25600564 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * *
25600590 AAAAGAGCTTATGCGCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* * * *
25600616 AAAATGACTTATGTCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
25600642 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
25600668 AAAAGG
1 AAAAGG
25600674 CCCAGTTTAC
Statistics
Matches: 92, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 92 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:25600619 original size:52 final size:52
Alignment explanation
Indices: 25600538--25600673 Score: 184
Period size: 52 Copynumber: 2.6 Consensus size: 52
25600528 GAGGAAGTGC
*
25600538 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCC-CTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGACTTATGCCTC-AGTTTACCG
* * * ** * *
25600590 AAAAGAGCTTATGCGCTAGTTTACCGAAAATGACTTATGTCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGACTTATGCCTCAGTTTACCG
25600642 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGG
25600674 CCCAGTTTAC
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
52 68 0.99
53 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGACTTATGCCTCAGTTTACCG
Found at i:25600688 original size:18 final size:18
Alignment explanation
Indices: 25600656--25600691 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
25600646 GGGCTTATGC
**
25600656 CCCAGTTTATTGAAAAGG
1 CCCAGTTTACAGAAAAGG
25600674 CCCAGTTTACAGAAAAGG
1 CCCAGTTTACAGAAAAGG
25600692 GCTTTGCCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (18 bp):
CCCAGTTTACAGAAAAGG
Found at i:25600911 original size:42 final size:42
Alignment explanation
Indices: 25600852--25600943 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
25600842 TAGTCTCCCC
*
25600852 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGGTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGGTATTG
*
25600894 AAATGGGCTTGCATACATTCATTGATATTTCATGTGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATGTGGTATTG
25600936 AAATGGGC
1 AAATGGGC
25600944 CTATGGGCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATGTGGTATTG
Found at i:25601003 original size:31 final size:31
Alignment explanation
Indices: 25600967--25601045 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
25600957 CGTTTACAAT
*
25600967 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
25600998 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
25601029 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
25601046 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:25601845 original size:48 final size:48
Alignment explanation
Indices: 25601785--25602018 Score: 229
Period size: 48 Copynumber: 4.9 Consensus size: 48
25601775 GTCGAGGCCG
* * * *
25601785 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTTAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCA
* * *
25601833 ATGCCATATCCCAGACATGGTCTTACACTAGCGCACCTATCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCA
* * * * ** *
25601881 ATGCCATGACCCAAACATGGTCCTACACTACCTCACATATCAACACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCA
* ** * * * *
25601929 ATGCCATGTCCTAGACATGGTCTTACTTTGGCTCTCATA--ATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA-AT-GCCA
* *
25601977 ATGCCATGTCCCAGACATGGTCTTACACTGGCGCACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
25602019 CCCAATTGTC
Statistics
Matches: 149, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
46 1 0.01
48 147 0.99
50 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCA
Found at i:25609284 original size:26 final size:27
Alignment explanation
Indices: 25609254--25609328 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 27
25609244 GTAGCTCCGG
25609254 AGAGCCAT-TAATCAGGAAGCTCAAAA
1 AGAGCCATATAATCAGGAAGCTCAAAA
** **
25609280 AGAGCC-TATAATTGGGAAGCTCACGA
1 AGAGCCATATAATCAGGAAGCTCAAAA
*
25609306 AGAGCCATATAA-CAGGACGCTCA
1 AGAGCCATATAATCAGGAAGCTCA
25609329 TAAGAGCTAC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.03
26 34 0.85
27 5 0.12
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (27 bp):
AGAGCCATATAATCAGGAAGCTCAAAA
Found at i:25612963 original size:50 final size:50
Alignment explanation
Indices: 25612868--25612964 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
25612858 ATTGCCACTG
* * * ** * *
25612868 ATAACCCTTTGTGGAGAAGCCACCACTGATATGCAGATATGCTGCCATTT
1 ATAACACTTTGTGGACAAGCCACCACTAATACCCAAATATACTGCCATTT
* *
25612918 ATAACACTTTGTGGACTAGCCACTACTAATACCCAAATATACTGCCA
1 ATAACACTTTGTGGACAAGCCACCACTAATACCCAAATATACTGCCA
25612965 CTTACTTCCA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 38 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (50 bp):
ATAACACTTTGTGGACAAGCCACCACTAATACCCAAATATACTGCCATTT
Found at i:25613168 original size:17 final size:15
Alignment explanation
Indices: 25613138--25613171 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
25613128 GATCATAGGT
25613138 CTCAATATTCACATA
1 CTCAATATTCACATA
25613153 CTCATATATATCACATA
1 CTCA-ATAT-TCACATA
25613170 CT
1 CT
25613172 TGAACCACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.38, C:0.26, G:0.00, T:0.35
Consensus pattern (15 bp):
CTCAATATTCACATA
Found at i:25630680 original size:78 final size:82
Alignment explanation
Indices: 25630545--25630728 Score: 256
Period size: 78 Copynumber: 2.3 Consensus size: 82
25630535 TCGAATGATG
*
25630545 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
25630609 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * **
25630625 TCCGGG-TAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
25630686 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
25630704 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25630729 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.59
79 18 0.19
80 19 0.20
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:25630735 original size:40 final size:40
Alignment explanation
Indices: 25630545--25630728 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
25630535 TCGAATGATG
* * *
25630545 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
25630585 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
25630625 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25630663 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
25630704 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25630729 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 34 0.26
39 9 0.07
40 79 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25633862 original size:13 final size:13
Alignment explanation
Indices: 25633844--25633871 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25633834 ATTTTATTTT
25633844 TTAACACAAAATA
1 TTAACACAAAATA
25633857 TTAACACAAAATA
1 TTAACACAAAATA
25633870 TT
1 TT
25633872 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:25636718 original size:23 final size:24
Alignment explanation
Indices: 25636692--25636739 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
25636682 GAAATGGTTA
**
25636692 AAGATATAATTGTTTTTA-ATTTT
1 AAGATATAATACTTTTTATATTTT
*
25636715 AAGATATGATACTTTTTATATTTT
1 AAGATATAATACTTTTTATATTTT
25636739 A
1 A
25636740 CACTTTCTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.54
Consensus pattern (24 bp):
AAGATATAATACTTTTTATATTTT
Found at i:25642967 original size:40 final size:40
Alignment explanation
Indices: 25642862--25643118 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
25642852 CGGATGATAA
* *
25642862 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
25642902 CCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
25642941 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
25642981 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25643021 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
25643061 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
25643101 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25643119 TACTTGGTTT
Statistics
Matches: 202, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
39 50 0.25
40 152 0.75
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25643910 original size:24 final size:23
Alignment explanation
Indices: 25643883--25643929 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
25643873 TAGGAATGGA
25643883 ATTAAATAGTGAATAAATA-GTAAT
1 ATTAAAT-GT-AATAAATATGTAAT
*
25643907 ATTAAATGTAATAATTATGTAAT
1 ATTAAATGTAATAAATATGTAAT
25643930 CGAACCTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 7 0.33
24 7 0.33
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (23 bp):
ATTAAATGTAATAAATATGTAAT
Found at i:25651140 original size:40 final size:40
Alignment explanation
Indices: 25650992--25651206 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
25650982 CGGATGATAA
* *
25650992 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
25651032 CCGGGCTAAG-CCCGAAGGCATTT-TGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25651070 CCGGGCTAAGT-CCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
25651109 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
25651149 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
25651189 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
25651207 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 33 0.21
39 55 0.34
40 72 0.45
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:25653879 original size:2 final size:2
Alignment explanation
Indices: 25653872--25653900 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25653862 GAGACTAGTC
25653872 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
25653901 CATGTCATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25655927 original size:30 final size:30
Alignment explanation
Indices: 25655893--25655953 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25655883 TCCTTAACTC
25655893 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
25655923 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
25655953 A
1 A
25655954 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:25661200 original size:13 final size:14
Alignment explanation
Indices: 25661176--25661215 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
25661166 TGTTTATGGA
25661176 TATTAGAAATTTTG
1 TATTAGAAATTTTG
25661190 TATTA-AAATTTTG
1 TATTAGAAATTTTG
*
25661203 T-TCAGAAATTTTG
1 TATTAGAAATTTTG
25661216 ATGTTTGCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 2 0.08
13 17 0.71
14 5 0.21
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (14 bp):
TATTAGAAATTTTG
Found at i:25664755 original size:40 final size:39
Alignment explanation
Indices: 25664628--25664795 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 39
25664618 CGGAATATAA
*
25664628 CCGGATATAATC-ACGT-GCACAAATGCCTTTGGGTCTTAGC
1 CCGGATATAA-CAAC-TAGCAC-AATGCCTTCGGGTCTTAGC
* * *
25664668 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
25664708 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*** * * * *
25664748 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
25664788 CCGGATAT
1 CCGGATAT
25664796 CATTCGATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 103 0.97
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:25669886 original size:26 final size:27
Alignment explanation
Indices: 25669846--25669916 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
25669836 TAAATATAAT
*
25669846 ATTAAT-TATTATTTAATATTA-AAAA
1 ATTAATATATTTTTTAATATTATAAAA
* *
25669871 ATTAATATATTTTTTAGTATTATATAA
1 ATTAATATATTTTTTAATATTATAAAA
* *
25669898 TTTAA-ATAATTTTTAATAT
1 ATTAATATATTTTTTAATAT
25669917 GAATATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.16
26 25 0.66
27 7 0.18
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
ATTAATATATTTTTTAATATTATAAAA
Found at i:25669910 original size:27 final size:27
Alignment explanation
Indices: 25669828--25669940 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 27
25669818 TTTATATCAA
* * *
25669828 TTTTATTATAAATATAATATT-AATTAT
1 TTTTAATATGAATATAAT-TTAAATAAT
* * *
25669855 TATTTAATATTAA-A-AAATTAATATATT
1 T-TTTAATATGAATATAATTTAA-ATAAT
* *
25669882 TTTTAGTAT-TATATAATTTAAATAAT
1 TTTTAATATGAATATAATTTAAATAAT
* *
25669908 TTTTAATATGAATATAATTTTAATAAC
1 TTTTAATATGAATATAATTTAAATAAT
25669935 TTTTAA
1 TTTTAA
25669941 CTATTGTTTA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
25 3 0.04
26 23 0.34
27 32 0.48
28 9 0.13
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (27 bp):
TTTTAATATGAATATAATTTAAATAAT
Found at i:25673714 original size:28 final size:28
Alignment explanation
Indices: 25673674--25673752 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
25673664 GCAATCAAAT
* * *
25673674 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
25673702 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
25673730 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
25673753 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:25675782 original size:29 final size:29
Alignment explanation
Indices: 25675750--25675963 Score: 218
Period size: 29 Copynumber: 7.4 Consensus size: 29
25675740 TCGTAACCGA
*
25675750 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ***
25675779 GCACTGTGTGTGCGAGTTCCGTAACTGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
*
25675807 GCACTGTGTGTGCGAGATCAGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ****
25675836 GCACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
*
25675864 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* ** *
25675893 GCACTGTGTGTGCGAGTTCCGTAATCGA-
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
* * *
25675921 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCCGTTGTTGAG
25675950 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
25675964 AATTGAGATC
Statistics
Matches: 146, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
28 66 0.45
29 73 0.50
31 7 0.05
ACGTcount: A:0.16, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCCGTTGTTGAG
Found at i:25675818 original size:57 final size:57
Alignment explanation
Indices: 25675721--25675963 Score: 407
Period size: 57 Copynumber: 4.2 Consensus size: 57
25675711 AAGTGAACAT
*
25675721 AGGCACTGTGTGTGTGAGTT-CGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
25675777 AGGCACTGTGTGTGCGAGTTCCGTAACTGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
25675834 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
25675891 AGGCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
25675948 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
25675964 AATTGAGATC
Statistics
Matches: 176, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
56 19 0.11
57 150 0.85
59 7 0.04
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:25680856 original size:28 final size:28
Alignment explanation
Indices: 25680816--25680894 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
25680806 GCAATCAAAT
* * *
25680816 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
25680844 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
25680872 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
25680895 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:25686395 original size:52 final size:51
Alignment explanation
Indices: 25686275--25686451 Score: 261
Period size: 52 Copynumber: 3.5 Consensus size: 51
25686265 ACTAGTGACT
* *
25686275 CAAGTATGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
25686324 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
25686376 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
25686427 CAAGGGTGGTACTATGTGTAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
25686452 TCGGGTATCC
Statistics
Matches: 118, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
49 33 0.28
50 2 0.02
51 41 0.35
52 42 0.36
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:25689644 original size:46 final size:47
Alignment explanation
Indices: 25689577--25689749 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 47
25689567 TATGTAGGCT
25689577 AGTGTAAGACCATGT-T-GGACATGGCATCGGCCACATTACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-CATTACGAGAGCC
* * * *
25689623 AGTGTAAGACCATGT-T-GGACATGGCCTTGG--CATTGAGACGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATT---ACGAGAGCC
* * *
25689669 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-C-ATTACGAGAGCC
25689717 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
25689750 AATCCACCCT
Statistics
Matches: 107, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.04
46 50 0.47
47 1 0.01
48 50 0.47
51 1 0.01
52 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCCATTACGAGAGCC
Found at i:25689721 original size:48 final size:46
Alignment explanation
Indices: 25689577--25689749 Score: 195
Period size: 48 Copynumber: 3.7 Consensus size: 46
25689567 TATGTAGGCT
* *
25689577 AGTGTAAGACCATGTTGGACATGGCATCGGCCAC-ATTACGAGAGCC
1 AGTGTAAGACCATGTTGGACATGGCATCGGCCTCGA-CACGAGAGCC
* * * * * * *
25689623 AGTGTAAGACCATGTTGGACATGGCCTTGGCATTGAGACGAGATCT
1 AGTGTAAGACCATGTTGGACATGGCATCGGCCTCGACACGAGAGCC
* *
25689669 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGAGCC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGCCTCGACACGAGAGCC
25689717 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGT-T-GGACATGGCATCGGC
25689750 AATCCACCCT
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 51 0.48
47 2 0.02
48 54 0.50
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTTGGACATGGCATCGGCCTCGACACGAGAGCC
Found at i:25692874 original size:46 final size:47
Alignment explanation
Indices: 25692811--25692927 Score: 191
Period size: 46 Copynumber: 2.5 Consensus size: 47
25692801 TGGCACTAAT
25692811 ACAAGGATACCATGTAAGACCATGTTTGGAACATGG-ATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
*
25692857 ACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
1 ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
* * *
25692904 ATAAGGACAGCATGTAAGACCATG
1 ACAAGGATACCATGTAAGACCATG
25692928 CCAAGGCATG
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
46 35 0.54
47 30 0.46
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.24
Consensus pattern (47 bp):
ACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAG
Found at i:25692918 original size:47 final size:46
Alignment explanation
Indices: 25692819--25692927 Score: 173
Period size: 47 Copynumber: 2.3 Consensus size: 46
25692809 ATACAAGGAT
*
25692819 ACCATGTAAGACCATGTTTGGAACATGGATTTGGTAAGACAAAGAT
1 ACCATGTAAGACCATGTTTGGAACATGGATTTGGTAAGACAAAGAC
* *
25692865 ACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGAC
1 ACCATGTAAGACCATGTTTGGAACATGG-ATTTGGTAAGACAAAGAC
*
25692912 AGCATGTAAGACCATG
1 ACCATGTAAGACCATG
25692928 CCAAGGCATG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 28 0.48
47 30 0.52
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (46 bp):
ACCATGTAAGACCATGTTTGGAACATGGATTTGGTAAGACAAAGAC
Found at i:25693101 original size:108 final size:107
Alignment explanation
Indices: 25692914--25693210 Score: 495
Period size: 108 Copynumber: 2.7 Consensus size: 107
25692904 ATAAGGACAG
** * *
25692914 CATGTAAGACCATGCCAAGGCATGGCATTGACAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTG-TGAGTTC-ATAAGGCAAGGATACCATGTAAGACC
25692979 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
64 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
25693023 CATGTAAGACCATGCCAAGGCATGGCATTAGTGAGTTCATAGGGCAAGGATACCATGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATT-GTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
25693088 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
65 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* *
25693131 CATGTAAGGCCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCA
1 CATGTAAGACCATGCCAAGGCATGGCATT-GTGAGTTCATAAGGCAAGGATACCATGTAAGACCA
25693196 TGTCAAGACATGGCA
65 TGTCAAGACATGGCA
25693211 ATGGTAAGTT
Statistics
Matches: 178, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
108 143 0.80
109 34 0.19
110 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (107 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
GTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:25693221 original size:53 final size:54
Alignment explanation
Indices: 25692914--25693210 Score: 370
Period size: 55 Copynumber: 5.5 Consensus size: 54
25692904 ATAAGGACAG
* ** * *
25692914 CATGTAAGACCATGCCAAGGCATGGCATTGACAAGTTCTATAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
* *
25692968 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATAC
* *
25693023 CATGTAAGACCATGCCAAGGCATGGCATT-AGTGAGTTC-ATAGGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGA-TGAGTTCTATAAGGCAAGGATAC
* *
25693076 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGATAC
* * *
25693131 CATGTAAGGCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
* *
25693184 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
25693211 ATGGTAAGTT
Statistics
Matches: 210, Mismatches: 24, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
52 8 0.04
53 73 0.35
54 38 0.18
55 83 0.40
56 8 0.04
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC
Found at i:25698148 original size:40 final size:39
Alignment explanation
Indices: 25698104--25698291 Score: 155
Period size: 40 Copynumber: 4.7 Consensus size: 39
25698094 ATAACCACAA
* ***** *
25698104 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATACAACAACTC
25698144 GCACAAATGCCTTCGGGTCTTAGCCCGGATACAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATACAACAACTC
* *
25698184 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATACAA-CAACTC
* * * * *
25698224 GCATAAATGCCTTCGGGACTTAGCCCAGATATAATC-ACTA
1 GCA-CAATGCCTTCGGGTCTTAGCCCGGATACAA-CAACTC
* *
25698264 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
25698292 GTATCATTCA
Statistics
Matches: 131, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 128 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATACAACAACTC
Found at i:25698232 original size:80 final size:80
Alignment explanation
Indices: 25698103--25698291 Score: 227
Period size: 80 Copynumber: 2.4 Consensus size: 80
25698093 TATAACCACA
* * * ** * *
25698103 AGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGC
*
25698168 CCGGATACAA-CAACT
66 CCAGATACAATC-ACT
* * * *
25698183 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGC
*
25698248 CCAGATATAATCACT
66 CCAGATACAATCACT
* *
25698263 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
25698292 GTATCATTCA
Statistics
Matches: 91, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 90 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGC
CCAGATACAATCACT
Found at i:25699172 original size:2 final size:2
Alignment explanation
Indices: 25699165--25699192 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25699155 ATGTGCAAAC
25699165 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25699193 GCTAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25706317 original size:40 final size:40
Alignment explanation
Indices: 25706268--25706475 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
25706258 TCTTCGGAAT
* * *
25706268 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
25706307 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
25706347 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
25706387 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
25706427 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
25706467 TTAGCCCGG
1 TTAGCCCGG
25706476 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:25711414 original size:28 final size:28
Alignment explanation
Indices: 25711349--25711449 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
25711339 ATAGTGAATC
*
25711349 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
25711378 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25711406 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
25711436 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25711450 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25719331 original size:28 final size:28
Alignment explanation
Indices: 25719266--25719366 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
25719256 ATAGTGAATC
*
25719266 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
25719295 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
25719323 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
25719353 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25719367 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:25725502 original size:40 final size:39
Alignment explanation
Indices: 25725453--25725659 Score: 238
Period size: 40 Copynumber: 5.2 Consensus size: 39
25725443 TCTTCGGAAT
* *
25725453 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAA-TGCCTTCGGGTC
* * ** * *
25725492 TTAACCCGGATTTGGTAACTTGCACAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAATGCCTTCGGGTC
*
25725531 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCAC-AATGCCTTCGGGTC
* *
25725571 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCA-CAATGCCTTCGGGTC
* *
25725611 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCA-CAATGCCTTCGGGTC
25725651 TTAGCCCGG
1 TTAGCCCGG
25725660 GTATCATTCA
Statistics
Matches: 146, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.23
40 112 0.77
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAATCACTAGCACAATGCCTTCGGGTC
Found at i:25732687 original size:47 final size:47
Alignment explanation
Indices: 25732615--25732888 Score: 386
Period size: 47 Copynumber: 5.7 Consensus size: 47
25732605 CCCTTCGGGA
* * * * * * *
25732615 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
25732662 CCTATCACATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25732709 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25732758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25732805 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25732852 CTTATCACATATATATACACCTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
25732889 AAAATCCTAA
Statistics
Matches: 208, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
47 139 0.67
49 69 0.33
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25732780 original size:96 final size:96
Alignment explanation
Indices: 25732615--25732888 Score: 378
Period size: 96 Copynumber: 2.9 Consensus size: 96
25732605 CCCTTCGGGA
* * * * * *
25732615 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* * *
25732677 CAGTTTCACATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
25732709 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25732774 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
25732805 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
25732868 ACACCTTCACATTCATCACAT
64 ACACTTTCACATTCATCACAT
25732889 AAAATCCTAA
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 55 0.34
95 1 0.01
96 104 0.64
97 3 0.02
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25732873 original size:143 final size:143
Alignment explanation
Indices: 25732615--25732888 Score: 440
Period size: 143 Copynumber: 1.9 Consensus size: 143
25732605 CCCTTCGGGA
* * * * *
25732615 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAG
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
** *
25732680 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
25732745 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * * *
25732758 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
25732823 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
25732888 T
131 T
25732889 AAAATCCTAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
143 119 1.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:25735256 original size:15 final size:15
Alignment explanation
Indices: 25735236--25735267 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
25735226 ATAAGCTTAC
25735236 TTGTGTTAATTTTTG
1 TTGTGTTAATTTTTG
25735251 TTGTGTTAATTTTTG
1 TTGTGTTAATTTTTG
25735266 TT
1 TT
25735268 TCTTGTAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.19, T:0.69
Consensus pattern (15 bp):
TTGTGTTAATTTTTG
Found at i:25737883 original size:7 final size:7
Alignment explanation
Indices: 25737871--25737895 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25737861 GAATGACTCC
25737871 TAGAAGA
1 TAGAAGA
25737878 TAGAAGA
1 TAGAAGA
25737885 TAGAAGA
1 TAGAAGA
25737892 TAGA
1 TAGA
25737896 GACGTAGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.16
Consensus pattern (7 bp):
TAGAAGA
Found at i:25741063 original size:2 final size:2
Alignment explanation
Indices: 25741056--25741081 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25741046 CGGCTCTAGC
25741056 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25741082 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25741888 original size:40 final size:40
Alignment explanation
Indices: 25741833--25742035 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
25741823 TGAATGATAC
* * * *
25741833 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
25741873 CCGGGTTAAGACCCGAAGGCA-TTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25741912 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
25741952 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
25741992 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25742032 CCGG
1 CCGG
25742036 CTAAATTCCG
Statistics
Matches: 144, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
39 33 0.23
40 111 0.77
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:25742048 original size:79 final size:79
Alignment explanation
Indices: 25741829--25742039 Score: 307
Period size: 79 Copynumber: 2.7 Consensus size: 79
25741819 CAATTGAATG
* * * * *
25741829 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
25741894 TTGTGCGAGTTGCT
66 TTGTGCAAGTTGCT
* * *
25741908 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
25741973 TTTGTGCAAGTTGCT
66 -TTGTGCAAGTTGCT
* *
25741988 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
25742040 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
79 63 0.54
80 54 0.46
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTGTGCAAGTTGCT
Found at i:25749176 original size:2 final size:2
Alignment explanation
Indices: 25749169--25749194 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25749159 CGGCTCTAGC
25749169 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25749195 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25749999 original size:40 final size:40
Alignment explanation
Indices: 25749944--25750147 Score: 284
Period size: 40 Copynumber: 5.1 Consensus size: 40
25749934 TGAATGATAC
* * * *
25749944 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
25749984 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25750024 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
25750064 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
25750104 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
25750144 CCGG
1 CCGG
25750148 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 145 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:25750077 original size:80 final size:80
Alignment explanation
Indices: 25749940--25750151 Score: 320
Period size: 80 Copynumber: 2.7 Consensus size: 80
25749930 CAATTGAATG
* * * *
25749940 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
25750004 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
25750020 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
25750085 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
25750100 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
25750152 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 6 0.05
80 112 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:25754296 original size:28 final size:27
Alignment explanation
Indices: 25754264--25754327 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 27
25754254 ATTTACTAGA
*
25754264 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGA-CATT
*
25754292 ATACCCCTATGTATGCAAAATGACTTT
1 ATACCCCTATGTATGCAAAATGACATT
25754319 ATACCCCTA
1 ATACCCCTA
25754328 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 12 0.35
28 22 0.65
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACATT
Found at i:25754533 original size:29 final size:28
Alignment explanation
Indices: 25754432--25754522 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
25754422 AGGAAGCGTC
25754432 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
25754460 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
25754488 CTGGTGGCACTGCCACAAAATATCTATAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
25754517 CTGGTG
1 CTGGTG
25754523 ACTCTGTCAC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 50 0.88
29 7 0.12
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:25758649 original size:27 final size:28
Alignment explanation
Indices: 25758619--25758718 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
25758609 ATAGTGAGTC
25758619 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
25758646 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
25758674 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
25758705 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25758719 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:25759570 original size:7 final size:7
Alignment explanation
Indices: 25759560--25759584 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25759550 TCATCACCAC
25759560 AACATCA
1 AACATCA
25759567 AACATCA
1 AACATCA
25759574 AACATCA
1 AACATCA
25759581 AACA
1 AACA
25759585 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:25764007 original size:28 final size:28
Alignment explanation
Indices: 25763975--25764039 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
25763965 ATTTACTAGA
*
25763975 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
25764003 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
25764031 ATACCCCTA
1 ATACCCCTA
25764040 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:25764245 original size:29 final size:28
Alignment explanation
Indices: 25764145--25764234 Score: 130
Period size: 27 Copynumber: 3.2 Consensus size: 28
25764135 AGGAAGCGTC
25764145 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
25764173 CTGGTGGCCCTGCCAC-AATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
25764200 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
25764229 CTGGTG
1 CTGGTG
25764235 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
27 26 0.46
28 23 0.41
29 7 0.12
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:25764258 original size:55 final size:55
Alignment explanation
Indices: 25764145--25764258 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
25764135 AGGAAGCGTC
* *
25764145 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
* *
25764200 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCAC-ATT-TCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAATTATCTGT-T
25764255 CTGG
1 CTGG
25764259 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
54 6 0.12
55 32 0.62
56 14 0.27
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACAATTATCTGTT
Found at i:25764715 original size:19 final size:19
Alignment explanation
Indices: 25764691--25764729 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
25764681 TTTTAATTAT
* *
25764691 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
25764710 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
25764729 T
1 T
25764730 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:25773474 original size:79 final size:82
Alignment explanation
Indices: 25773334--25773518 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
25773324 TCGAATGATG
* * *
25773334 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
25773398 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
25773414 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
25773476 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
25773494 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25773519 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:25773526 original size:40 final size:40
Alignment explanation
Indices: 25773335--25773526 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
25773325 CGAATGATGT
* * * * *
25773335 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
25773375 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
25773415 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
25773454 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
25773494 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
25773527 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:25781515 original size:79 final size:82
Alignment explanation
Indices: 25781375--25781559 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
25781365 TCGAATGATG
* * *
25781375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
25781439 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
25781455 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
25781517 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
25781535 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25781560 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:25781567 original size:40 final size:40
Alignment explanation
Indices: 25781376--25781567 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
25781366 CGAATGATGT
* * * * *
25781376 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
25781416 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
25781456 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
25781495 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
25781535 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
25781568 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Done.