Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 89 of 770
Found at i:26041430 original size:20 final size:20
Alignment explanation
Indices: 26041394--26041432 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26041384 CGTACTTCAG
*
26041394 AAAATGGGGCCAGATGGGCC
1 AAAATGGGCCCAGATGGGCC
26041414 AAAATTGGGCCCA-ATGGGC
1 AAAA-TGGGCCCAGATGGGC
26041433 TTACGGACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.31, C:0.21, G:0.36, T:0.13
Consensus pattern (20 bp):
AAAATGGGCCCAGATGGGCC
Found at i:26046964 original size:40 final size:40
Alignment explanation
Indices: 26046912--26047135 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
26046902 GCCACTAGCT
* ** **
26046912 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
26046952 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* *
26046991 CAAATGCCTTCGGGACTTAGCCTGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
26047031 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* ***
26047071 CGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTCG-A
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAATAACTCGCA
26047110 TCAAATG-CTCTCGGGACTTAGCCCGG
1 -CAAATGCCT-TCGGGACTTAGCCCGG
26047136 TTATCATCCG
Statistics
Matches: 165, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 38 0.23
40 127 0.77
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:26047010 original size:79 final size:80
Alignment explanation
Indices: 26046912--26047096 Score: 264
Period size: 79 Copynumber: 2.3 Consensus size: 80
26046902 GCCACTAGCT
* ** ** *
26046912 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTTCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
26046977 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* *
26046991 CAAATGCCTTCGGGACTTAGCCTGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
26047056 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
26047071 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26047097 ATTAGCCACT
Statistics
Matches: 93, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 57 0.61
80 36 0.39
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:26047124 original size:80 final size:78
Alignment explanation
Indices: 26046912--26047136 Score: 260
Period size: 79 Copynumber: 2.8 Consensus size: 78
26046902 GCCACTAGCT
* * * **
26046912 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTTCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-ATAGCTCGCACAAATGCCTTCGGGACTTAGCCCGG
26046977 TATAATAACTCGCA
65 TATAATAACTCGCA
* *
26046991 CAAATGCCTTCGGGACTTAGCCTGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-ATAGCTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
26047056 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
*
26047071 CGAATGCCTTCGGGACTTAGCCCGGA-AT-TAGCCACTCG-ATCAAATG-CTCTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGCCCGGATATATAG---CTCGCA-CAAATGCCT-TCGGGACTTAGC
26047132 CCGGT
61 CCGGT
26047137 TATCATCCGA
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
77 3 0.02
79 63 0.50
80 61 0.48
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATATAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:26063648 original size:27 final size:27
Alignment explanation
Indices: 26063590--26063648 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
26063580 CTTTGACTGG
** * **
26063590 CGAACCCTAGGTTGCCAAATAGATTGG
1 CGAACCCTAGGACGCCAAATAGACTAA
*
26063617 TGAACCCTAGGACGCCAAATAGACTAA
1 CGAACCCTAGGACGCCAAATAGACTAA
26063644 CGAAC
1 CGAAC
26063649 ACAACTTTCA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.17
Consensus pattern (27 bp):
CGAACCCTAGGACGCCAAATAGACTAA
Found at i:26068274 original size:28 final size:28
Alignment explanation
Indices: 26068242--26068373 Score: 230
Period size: 28 Copynumber: 4.7 Consensus size: 28
26068232 AGAACAGAAA
* *
26068242 TTGTGACAGAGTCACCAG-ATACAGATAT
1 TTGTGGCAGAGCCACCAGAAT-CAGATAT
26068270 TTGTGGCAGAGCCACCAGAATCAGATAT
1 TTGTGGCAGAGCCACCAGAATCAGATAT
26068298 TTGTGGCAGAGCCACCAGAATCAGATAT
1 TTGTGGCAGAGCCACCAGAATCAGATAT
26068326 TTGTGGCAGAGCCACCAGAATCAGATAT
1 TTGTGGCAGAGCCACCAGAATCAGATAT
26068354 TTGTGGCAGAGCCACCAGAA
1 TTGTGGCAGAGCCACCAGAA
26068374 CGCTTCCTCC
Statistics
Matches: 101, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
28 99 0.98
29 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (28 bp):
TTGTGGCAGAGCCACCAGAATCAGATAT
Found at i:26068496 original size:36 final size:36
Alignment explanation
Indices: 26068427--26068498 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
26068417 TGTACATGTC
* * *
26068427 ATGGCATACAACAAACCGAATCAGAATATCATGCAT
1 ATGGCATACAACAAACAGAATCAAAATACCATGCAT
* * *
26068463 ATGGCATACATCATACAGAATCAAAATGCCATGCAT
1 ATGGCATACAACAAACAGAATCAAAATACCATGCAT
26068499 TACAGTCACA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (36 bp):
ATGGCATACAACAAACAGAATCAAAATACCATGCAT
Found at i:26068544 original size:26 final size:27
Alignment explanation
Indices: 26068515--26068567 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
26068505 CACAATTAAC
* *
26068515 CCTAGGGGTAAAATGGT-CATTTTGCA
1 CCTAGGGGCAAAATGGTAAATTTTGCA
*
26068541 CCTAGGGGCATAATGGTAAATTTTGCA
1 CCTAGGGGCAAAATGGTAAATTTTGCA
26068568 TACTTAGGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (27 bp):
CCTAGGGGCAAAATGGTAAATTTTGCA
Found at i:26072304 original size:40 final size:40
Alignment explanation
Indices: 26072249--26072511 Score: 402
Period size: 40 Copynumber: 6.5 Consensus size: 40
26072239 TGAATGATAC
* ** *
26072249 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
*
26072289 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
26072329 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
26072369 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-T-TATAT
26072411 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * *
26072451 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
26072491 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
26072512 ATTGTTCTTA
Statistics
Matches: 210, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
40 167 0.80
41 4 0.02
42 39 0.19
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:26072464 original size:122 final size:120
Alignment explanation
Indices: 26072245--26072511 Score: 417
Period size: 122 Copynumber: 2.2 Consensus size: 120
26072235 CATTTGAATG
* * *
26072245 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
* * *
26072310 TTTGTGCGAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
66 TTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
* * *
26072365 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATATCCGGGCTAAGACCCGAAGG
1 ATACCCGGGCTAAGACCCGAAGGCATTCATGCGAG-TGAT-TATATCCGGGCTAAGACCCGAAGG
*
26072430 CATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
64 CATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
*
26072487 ATACCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGCTAAGACCCGAAGGCA
26072512 ATTGTTCTTA
Statistics
Matches: 133, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
120 30 0.23
121 3 0.02
122 100 0.75
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (120 bp):
ATACCCGGGCTAAGACCCGAAGGCATTCATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
Found at i:26078371 original size:38 final size:39
Alignment explanation
Indices: 26078275--26078425 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
26078265 AATGTTCGAG
26078275 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
26078314 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
26078353 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
26078391 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
26078426 GGTTACCATA
Statistics
Matches: 106, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
38 36 0.34
39 53 0.50
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:26078371 original size:77 final size:79
Alignment explanation
Indices: 26078275--26078425 Score: 252
Period size: 77 Copynumber: 1.9 Consensus size: 79
26078265 AATGTTCGAG
26078275 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
26078339 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
* * *
26078353 TGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
*
26078417 ATTTGTGCG
66 AATTGTGCG
26078426 GGTTACCATA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 46 0.68
78 22 0.32
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:26078441 original size:40 final size:39
Alignment explanation
Indices: 26078275--26078455 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
26078265 AATGTTCGAG
*
26078275 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
26078314 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
26078353 TGAT-ACCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * * *
26078391 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATAACCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTA
** *
26078431 CCATAACCGGGCTATGTCCCGAAGG
1 TGATAACCGGGCTAAG-CCCGAAGG
26078456 TGTTTTGAAC
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.28
39 52 0.41
40 40 0.31
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATAACCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:26085927 original size:40 final size:39
Alignment explanation
Indices: 26085746--26085897 Score: 259
Period size: 39 Copynumber: 3.9 Consensus size: 39
26085736 AATGTTCGAG
26085746 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
26085785 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
26085824 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
26085863 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
26085898 GGTTACCATA
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:26090234 original size:28 final size:28
Alignment explanation
Indices: 26090203--26090310 Score: 144
Period size: 28 Copynumber: 3.9 Consensus size: 28
26090193 CTAGATACTA
** * *
26090203 ATATTTGTGGTGGACCCACCAAAATTAG
1 ATATTTGTGGCAGAGCCACCAGAATTAG
*
26090231 ATATTTATGGCAGAGCCACCAGAATTAG
1 ATATTTGTGGCAGAGCCACCAGAATTAG
* * *
26090259 GTATTTGTGGCAAAGCCACCAGAATCAG
1 ATATTTGTGGCAGAGCCACCAGAATTAG
26090287 ATATTTGTGGCAGAGCCACCAGAA
1 ATATTTGTGGCAGAGCCACCAGAA
26090311 CGCTTCCTCC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.24
Consensus pattern (28 bp):
ATATTTGTGGCAGAGCCACCAGAATTAG
Found at i:26097259 original size:27 final size:27
Alignment explanation
Indices: 26097213--26097325 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
26097203 CATGGCTGCT
* *
26097213 AGAACAGATA-TTGTGACAGAGTCACC
1 AGAACAGATATTTGTGGCAGAGCCACC
*
26097239 AGATATAGATA-TTGTGGCAGAGCCACC
1 AGA-ACAGATATTTGTGGCAGAGCCACC
26097266 AGAAACAGATATTTGTGGCAGAGCCACC
1 AG-AACAGATATTTGTGGCAGAGCCACC
*
26097294 AGACCAGATATTTGTGGCAGAGCCACC
1 AGAACAGATATTTGTGGCAGAGCCACC
26097321 AGAAC
1 AGAAC
26097326 TCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 3 0.04
27 56 0.72
28 19 0.24
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
AGAACAGATATTTGTGGCAGAGCCACC
Found at i:26097309 original size:55 final size:54
Alignment explanation
Indices: 26097215--26097324 Score: 159
Period size: 55 Copynumber: 2.0 Consensus size: 54
26097205 TGGCTGCTAG
* *
26097215 AACAGATATTGTGACAGAGTCACCAGATATAGATATTGTGGCAGAGCCACCAGA
1 AACAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGA
* *
26097269 AACAGATATTTGTGGCAGAGCCACCAGA-CCAGATATTTGTGGCAGAGCCACCAGA
1 AACAGATA-TTGTGACAGAGCCACCAGATACAGATA-TTGTGGCAGAGCCACCAGA
26097324 A
1 A
26097325 CTCTTCCTCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 13 0.26
55 37 0.74
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (54 bp):
AACAGATATTGTGACAGAGCCACCAGATACAGATATTGTGGCAGAGCCACCAGA
Found at i:26100390 original size:40 final size:40
Alignment explanation
Indices: 26100341--26100515 Score: 155
Period size: 40 Copynumber: 4.4 Consensus size: 40
26100331 TCGTTCAAAT
* * *
26100341 CCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAGATG
1 CCTTCGGGACTTAGCCTGGATT-TAGTAACTAGCACAGATG
* * *
26100381 CCTTCGGGACTTAACCTGGATTTAGTAAC-AACACAAATG
1 CCTTCGGGACTTAGCCTGGATTTAGTAACTAGCACAGATG
* *
26100420 CCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCAC-GAATG
1 CCTTCGGGA-CTTAGCCTGGATTTAGTAACTAGCACAG-ATG
* * * *
26100460 CCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACA-AAG
1 CCTTCGGGA-CTTAGCCTGGATTTAGTAAC-TAGCACAGATG
26100500 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
26100516 CGGACATCAT
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
38 3 0.03
39 30 0.27
40 69 0.62
41 10 0.09
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTGGATTTAGTAACTAGCACAGATG
Found at i:26105259 original size:40 final size:40
Alignment explanation
Indices: 26105215--26105337 Score: 140
Period size: 40 Copynumber: 3.1 Consensus size: 40
26105205 GTGCTAAGTG
* * *
26105215 ACTAAATCCGGAATAAGATCCGACGGCATACGTGTGAGTT
1 ACTAAATCCGGAATAAGATCCGAAGGCATTCGTGCGAGTT
* * * * *
26105255 ACTAAATCCAGACTAAGATCCGAAGGCTTTCGAGCGAGCT
1 ACTAAATCCGGAATAAGATCCGAAGGCATTCGTGCGAGTT
**
26105295 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGAATAAGAT-CCGAAGGCATTCGTGCGAGTT
26105335 ACT
1 ACT
26105338 GTAACCGGGC
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 67 0.99
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTAAATCCGGAATAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:26105346 original size:40 final size:40
Alignment explanation
Indices: 26105180--26105364 Score: 128
Period size: 40 Copynumber: 4.6 Consensus size: 40
26105170 TTCGAATGAT
* * *
26105180 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGC-GAGCT-ACTAA
** * * * * *
26105220 ATCCGGAATAAGAT-CCGACGGCATACGTGTGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * *
26105260 ATCCAGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * * *
26105300 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACT-AA
*
26105341 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
26105365 TGAATGTGTA
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
39 1 0.01
40 107 0.92
41 8 0.07
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTAA
Found at i:26111570 original size:39 final size:39
Alignment explanation
Indices: 26111541--26111672 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 39
26111531 GCTACTCGTT
*
26111541 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACATAACCCGGTTATAGTAACTCGCA
* *
26111580 CAGATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACATAACCCGG-TTATAGTAACTCGCA
* **
26111620 CAAATGCCTTC-GATCTTAGTCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGA-CATAACCCGG-TTATAGTAACTCGCA
*
26111659 CGAATGCCTTCGGA
1 CAAATGCCTTCGGA
26111673 TCTTAGTCCG
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
38 2 0.02
39 43 0.52
40 35 0.43
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACATAACCCGGTTATAGTAACTCGCA
Found at i:26111615 original size:40 final size:39
Alignment explanation
Indices: 26111544--26111724 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
26111534 ACTCGTTCAA
*
26111544 ATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAG
1 ATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCACAG
* *
26111583 ATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAA
1 ATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACAG
*
26111623 ATGCCTTC-GATCTTAGTCCGGATTTAGTAACTCGCAC-G
1 ATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCACAG
* * * *
26111661 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACA-
1 -ATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAG
*
26111702 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTC-GGACTTAGCCCGGA
26111725 CATCATTCGA
Statistics
Matches: 123, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.02
39 40 0.33
40 71 0.58
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
ATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAG
Found at i:26111651 original size:79 final size:79
Alignment explanation
Indices: 26111541--26111710 Score: 197
Period size: 79 Copynumber: 2.2 Consensus size: 79
26111531 GCTACTCGTT
26111541 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCAC-AGATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTC-GACATAGCCCGGTTATAGTAACTCGCACGA-ATGCCTTC-GGATCTTAACCCG
* *
26111604 GATTTAGTAAC-TCGCA
63 GATATAGTAACTTAGCA
* * **
26111620 CAAATGCCTTCGATCTTAGTCCGGATT-TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGA-CATAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGG
*
26111684 ATATAGTCACTTAGCA
64 ATATAGTAACTTAGCA
26111700 CAAA-GCCTTCG
1 CAAATGCCTTCG
26111711 GGACTTAGCC
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
78 5 0.06
79 63 0.80
80 11 0.14
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGACATAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCA
Found at i:26117168 original size:40 final size:40
Alignment explanation
Indices: 26117109--26117250 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
26117099 AAATTGAATG
* * *
26117109 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
26117149 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
26117189 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
26117229 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
26117251 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:26117251 original size:40 final size:39
Alignment explanation
Indices: 26117148--26117276 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
26117138 TGCTGGAAAT
* * *
26117148 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
26117188 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
26117228 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
26117268 TATATCCGG
1 TATATCCGG
26117277 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:26122364 original size:46 final size:46
Alignment explanation
Indices: 26122215--26122384 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
26122205 GGTTGAGCAT
* *
26122215 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
26122260 CCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
26122304 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
26122352 CCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26122385 GGGGTGGGTT
Statistics
Matches: 102, Mismatches: 12, Indels: 21
0.76 0.09 0.16
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
44 9 0.09
45 20 0.20
46 51 0.50
47 7 0.07
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:26141475 original size:47 final size:47
Alignment explanation
Indices: 26141404--26141580 Score: 273
Period size: 47 Copynumber: 3.8 Consensus size: 47
26141394 CCCTTCGGGA
* * * *
26141404 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26141451 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
26141498 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26141545 CTTATCACTTATATACACTTTCACATTCATCACATT
1 CTTATCACATATATACACTTTCACATTCATCACATT
26141581 AAAATCTTAA
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.28, C:0.32, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:26141482 original size:25 final size:25
Alignment explanation
Indices: 26141454--26141532 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
26141444 ACTCGGCCCT
*
26141454 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
26141479 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
26141501 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
26141526 ATCACAT
1 ATCACAT
26141533 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:26154431 original size:28 final size:28
Alignment explanation
Indices: 26154411--26154474 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
26154401 GTGACAGAGT
26154411 CACCAGATAT-AGATATTTGTGGCAAAGC
1 CACCAGA-ATCAGATATTTGTGGCAAAGC
26154439 CACCAGAATCAGATATTTGTGGCAAAGC
1 CACCAGAATCAGATATTTGTGGCAAAGC
26154467 CACCAGAA
1 CACCAGAA
26154475 CGCTTCCTCC
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 2 0.06
28 33 0.94
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (28 bp):
CACCAGAATCAGATATTTGTGGCAAAGC
Found at i:26154585 original size:36 final size:36
Alignment explanation
Indices: 26154528--26154599 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
26154518 TGTACATGTC
26154528 ATGGCATACAGCAAATCGAATCAAAATATCATGCAT
1 ATGGCATACAGCAAATCGAATCAAAATATCATGCAT
* * * *
26154564 ATGGCATACATCATA-CAGAATCAGAATGTCATGCAT
1 ATGGCATACAGCAAATC-GAATCAAAATATCATGCAT
26154600 TTCAGTCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 1 0.03
36 30 0.97
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (36 bp):
ATGGCATACAGCAAATCGAATCAAAATATCATGCAT
Found at i:26163687 original size:15 final size:15
Alignment explanation
Indices: 26163667--26163697 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26163657 CTTACAATCA
26163667 ATCTATTCATTCGGC
1 ATCTATTCATTCGGC
26163682 ATCTATTCATTCGGC
1 ATCTATTCATTCGGC
26163697 A
1 A
26163698 ACCAAACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (15 bp):
ATCTATTCATTCGGC
Found at i:26167789 original size:20 final size:18
Alignment explanation
Indices: 26167755--26167791 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
26167745 GCAACTCATA
26167755 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
26167773 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
26167792 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:26168639 original size:53 final size:54
Alignment explanation
Indices: 26168510--26168651 Score: 160
Period size: 53 Copynumber: 2.6 Consensus size: 54
26168500 AGTAAATCAT
* * * * *
26168510 GTAAGACCATGTCAAGACATGGCAGTGATAAACTACGATAAGGCAAAGATCCCAC
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCGATAAGGCAAAGATACCAC
** * * * *
26168565 GTAAGACCATACCATGGCATGGCAATGGTGAGTTC-ATAAGGCAAGGATACCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
*
26168618 GTAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
26168652 TAAAAAGGAA
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.63
54 3 0.04
55 23 0.33
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (54 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCGATAAGGCAAAGATACCAC
Found at i:26174688 original size:34 final size:34
Alignment explanation
Indices: 26174649--26174718 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
26174639 TCTAACATAG
*
26174649 TTGTGATGCCCTGTGGGGACATCTAACCTATCTA
1 TTGTGATGCCCTATGGGGACATCTAACCTATCTA
26174683 TTGTGATGCCCTATGGGGACATCTAACCTATCTA
1 TTGTGATGCCCTATGGGGACATCTAACCTATCTA
26174717 TT
1 TT
26174719 TAAGCGCTGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (34 bp):
TTGTGATGCCCTATGGGGACATCTAACCTATCTA
Found at i:26178722 original size:31 final size:30
Alignment explanation
Indices: 26178680--26178743 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
26178670 CCTTTTCACA
*
26178680 TTTTATATTTCATAACACTGGGCCGAAGCC
1 TTTTATATTTCATAACACTAGGCCGAAGCC
**
26178710 TTTTCATATTTCATATTACTAGGCCGAAGCC
1 TTTT-ATATTTCATAACACTAGGCCGAAGCC
26178741 TTT
1 TTT
26178744 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 4 0.13
31 26 0.87
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (30 bp):
TTTTATATTTCATAACACTAGGCCGAAGCC
Found at i:26179104 original size:20 final size:20
Alignment explanation
Indices: 26179081--26179127 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26179071 TTATGAACAC
26179081 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATACCA
*
26179100 TATCATCTGCATATCATACCA
1 -ATCATGTGCATATCATACCA
26179121 ATCATGT
1 ATCATGT
26179128 ATATAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACCA
Found at i:26187079 original size:26 final size:25
Alignment explanation
Indices: 26186982--26187089 Score: 114
Period size: 25 Copynumber: 4.4 Consensus size: 25
26186972 TTGGAGGCCT
*
26186982 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTGATAAACTGGGGCAAA
26187006 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
** * *
26187031 AGTTCTTTTAATAAACTGAGGCAAA
1 AGCCCTTTTGATAAACTGGGGCAAA
* *
26187056 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTT-GATAAACTGGGGCAAA
26187082 A-CCCTTTT
1 AGCCCTTTT
26187090 TGCACTTCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
23 7 0.10
24 13 0.19
25 37 0.53
26 13 0.19
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTGATAAACTGGGGCAAA
Found at i:26187162 original size:20 final size:20
Alignment explanation
Indices: 26187137--26187183 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26187127 TTATGAATAC
*
26187137 ATCATGTTCATATCATA-CA
1 ATCATGTGCATATCATATCA
26187156 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
26187177 ATCATGT
1 ATCATGT
26187184 ATATCAAGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:26189544 original size:11 final size:11
Alignment explanation
Indices: 26189528--26189555 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26189518 AAGCCCATTG
26189528 GGCCCAGTTTT
1 GGCCCAGTTTT
26189539 GGCCCAGTTTT
1 GGCCCAGTTTT
26189550 GGCCCA
1 GGCCCA
26189556 TCGAGGCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.32, G:0.29, T:0.29
Consensus pattern (11 bp):
GGCCCAGTTTT
Found at i:26190393 original size:15 final size:15
Alignment explanation
Indices: 26190369--26190398 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26190359 ACTAATGTAT
26190369 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
26190384 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
26190399 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:26202866 original size:26 final size:27
Alignment explanation
Indices: 26202837--26202902 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
26202827 TACAATCATA
26202837 TATCTCAT-AGGGCATAATAGT-ATTTT
1 TATCTCATAAGGGCATAATAGTCA-TTT
*
26202863 TATCACATAAGGGCATAATAGTCATTT
1 TATCTCATAAGGGCATAATAGTCATTT
26202890 TATCT-ATTAAGGG
1 TATCTCA-TAAGGG
26202903 TCTAGGTACA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 8 0.23
27 26 0.74
28 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (27 bp):
TATCTCATAAGGGCATAATAGTCATTT
Found at i:26209709 original size:27 final size:27
Alignment explanation
Indices: 26209673--26209761 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
26209663 CAGCGATGGT
* *
26209673 AATATAATCGGCACACAGACATGAGTA
1 AATATGATCGACACACAGACATGAGTA
* *
26209700 AATATGATCGACACAGAGTCATCGA-TA
1 AATATGATCGACACACAGACAT-GAGTA
* * *
26209727 AATATGATAGACACATAGCCACTG-GTA
1 AATATGATCGACACACAGACA-TGAGTA
26209754 AATATGAT
1 AATATGAT
26209762 TTGCATAAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 49 0.94
28 3 0.06
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (27 bp):
AATATGATCGACACACAGACATGAGTA
Found at i:26212043 original size:48 final size:47
Alignment explanation
Indices: 26211961--26212240 Score: 221
Period size: 48 Copynumber: 5.9 Consensus size: 47
26211951 AGTGAATTAT
* * * *
26211961 CGATGCCATGTTCCA-AACATGGTC-TATTATTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGAA-ATGGTCTTA-CACTGGCTCACATATC-AGGC
**
26212009 CGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCACA-ATGTGGC
1 CGATGCCATGTCCCAGAAATGGTCTTACACTGG--CTCACATATCAGGC
* * * * *
26212057 CGATGCTATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGC
1 CGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCACATATC-AGGC
* * * *
26212105 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATCA--C
1 CGATGCCATGTCCCAGAAATGGTCTTACACT-G-GCTCAC-ATATCAGGC
* * * *
26212153 CGATGCCATGTTCCA-AACATGGTCTTACACTGGCTCTCATATCGTGGT
1 CGATGCCATGTCCCAGAA-ATGGTCTTACACTGGCTCACATATC-AGGC
* * *
26212201 CGATGCCATGTCTCAGACATGGTCTTACACTGGCACACAT
1 CGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCACAT
26212241 CACCCAAATA
Statistics
Matches: 186, Mismatches: 32, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
45 4 0.02
46 9 0.05
47 4 0.02
48 148 0.80
49 6 0.03
50 11 0.06
51 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGAAATGGTCTTACACTGGCTCACATATCAGGC
Found at i:26212127 original size:96 final size:96
Alignment explanation
Indices: 26211961--26212234 Score: 302
Period size: 96 Copynumber: 2.9 Consensus size: 96
26211951 AGTGAATTAT
* * * * * * *
26211961 CGATGCCATGTTCCAAACATGGTC-TATTATTGGCTCACATGTCGAGGC-CGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTCTTA-CACTAGCGCACATATC-ATGCTCGATGCCATGTCCCA
* ** **
26212024 GAAATGGTCTTACACTGGCTCTCACAATGTGGC
64 GACATGGTCTTACACTGGCTCTCACAACATCAC
* *
26212057 CGATGCTATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATGCT-GATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATC-ATGCTCGATGCCATGTCCCAG
*
26212121 ACATGGTCTTACACTAGCTCTCACAACATCAC
65 ACATGGTCTTACACTGGCTCTCACAACATCAC
* * * * * * *
26212153 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGTCGATGCCATGTCTCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCATGCTCGATGCCATGTCCCAGA
26212218 CATGGTCTTACACTGGC
66 CATGGTCTTACACTGGC
26212235 ACACATCACC
Statistics
Matches: 149, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
95 3 0.02
96 144 0.97
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCATGCTCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTCTCACAACATCAC
Found at i:26216852 original size:13 final size:13
Alignment explanation
Indices: 26216834--26216860 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26216824 GTTAAATTAG
26216834 TTAATTAGTTTAA
1 TTAATTAGTTTAA
26216847 TTAATTAGTTTAA
1 TTAATTAGTTTAA
26216860 T
1 T
26216861 AAACAAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAA
Found at i:26221140 original size:6 final size:6
Alignment explanation
Indices: 26221129--26221215 Score: 59
Period size: 6 Copynumber: 14.3 Consensus size: 6
26221119 AATCCCCCTA
* * * * * *
26221129 TTTTAT TTTTAT TCTTAT TATTAT TTATTCT TATTCT TATTAT ATTTTA-
1 TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT TTTTAT TTTTAT -TTTTAT
* * * *
26221178 TTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
26221216 GAATTTTCTT
Statistics
Matches: 64, Mismatches: 14, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
5 5 0.08
6 51 0.80
7 8 0.12
ACGTcount: A:0.18, C:0.07, G:0.01, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:26221156 original size:22 final size:22
Alignment explanation
Indices: 26221130--26221208 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
26221120 ATCCCCCTAT
26221130 TTTATTTTTATTCTTATTATTA
1 TTTATTTTTATTCTTATTATTA
*
26221152 TTTATTCTTATTCTTATTA-TA
1 TTTATTTTTATTCTTATTATTA
* *
26221173 TTT-TATTTTATTCTTATTTTTCT
1 TTTAT-TTTTATTCTTATTATT-A
26221196 TTTGATTTTTATT
1 TTT-ATTTTTATT
26221209 TTCATTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.02
21 17 0.35
22 19 0.40
23 3 0.06
24 7 0.15
25 1 0.02
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.73
Consensus pattern (22 bp):
TTTATTTTTATTCTTATTATTA
Found at i:26221190 original size:16 final size:16
Alignment explanation
Indices: 26221127--26221204 Score: 70
Period size: 16 Copynumber: 4.7 Consensus size: 16
26221117 TGAATCCCCC
26221127 TATTTTATTTTTATTCT
1 TATTTTA-TTTTATTCT
26221144 TATTATTA-TTTATTCT
1 TATT-TTATTTTATTCT
*
26221160 TATTCTTATTATATT-T
1 TATT-TTATTTTATTCT
*
26221176 TATTTTATTCTTATTTT
1 TATTTTATT-TTATTCT
*
26221193 TCTTTTGATTTT
1 TATTTT-ATTTT
26221205 TATTTTCATT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
15 5 0.10
16 24 0.46
17 17 0.33
18 6 0.12
ACGTcount: A:0.19, C:0.06, G:0.01, T:0.73
Consensus pattern (16 bp):
TATTTTATTTTATTCT
Found at i:26224146 original size:13 final size:13
Alignment explanation
Indices: 26224128--26224152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26224118 TTAAATTAGT
26224128 TAATTAGTTTAAA
1 TAATTAGTTTAAA
26224141 TAATTAGTTTAA
1 TAATTAGTTTAA
26224153 TAAACAAACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:26227245 original size:29 final size:29
Alignment explanation
Indices: 26227211--26227313 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 29
26227201 TACTCGATTT
* * *
26227211 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
26227240 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
26227269 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
26227298 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26227314 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.24
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:26228507 original size:19 final size:17
Alignment explanation
Indices: 26228471--26228527 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 17
26228461 AGAATGAACA
*
26228471 CTTTTTTTT-TTCTTTT
1 CTTTTTTTTCTTCATTT
26228487 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTTCTTCAT-TT
*
26228506 CTCTTTTTTTTTTCATTT
1 CT-TTTTTTTCTTCATTT
26228524 CTTT
1 CTTT
26228528 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 4 0.11
17 7 0.20
18 8 0.23
19 14 0.40
20 2 0.06
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (17 bp):
CTTTTTTTTCTTCATTT
Found at i:26228510 original size:21 final size:18
Alignment explanation
Indices: 26228471--26228525 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
26228461 AGAATGAACA
26228471 CTTTTTTTTTTC-TTT-T
1 CTTTTTTTTTTCATTTCT
26228487 CTTTGTTTTTCTTCATATTCT
1 CTTT-TTTTT-TTCAT-TTCT
26228508 CTTTTTTTTTTCATTTCT
1 CTTTTTTTTTTCATTTCT
26228526 TTATTCTTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
CTTTTTTTTTTCATTTCT
Found at i:26239063 original size:14 final size:14
Alignment explanation
Indices: 26239040--26239070 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26239030 AATTTATGAA
26239040 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
26239054 AAATAGAATAAAAT
1 AAATAAAATAAAAT
26239068 AAA
1 AAA
26239071 GAACACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:26239181 original size:15 final size:15
Alignment explanation
Indices: 26239161--26239191 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26239151 TTTGAATCAA
26239161 ATACAAGAGGAATAG
1 ATACAAGAGGAATAG
26239176 ATACAAGAGGAATAG
1 ATACAAGAGGAATAG
26239191 A
1 A
26239192 CTATGTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.06, G:0.26, T:0.13
Consensus pattern (15 bp):
ATACAAGAGGAATAG
Found at i:26241658 original size:8 final size:8
Alignment explanation
Indices: 26241645--26241686 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
26241635 GGGGTGTTAC
26241645 AATTTTAT
1 AATTTTAT
26241653 AATTTTAT
1 AATTTTAT
26241661 --TTTTAT
1 AATTTTAT
26241667 AATTTTAT
1 AATTTTAT
26241675 AATTTTA-
1 AATTTTAT
26241682 AATTT
1 AATTT
26241687 AGCGAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.19
7 5 0.16
8 21 0.66
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
AATTTTAT
Found at i:26241666 original size:14 final size:14
Alignment explanation
Indices: 26241647--26241674 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26241637 GGTGTTACAA
26241647 TTTTATAATTTTAT
1 TTTTATAATTTTAT
26241661 TTTTATAATTTTAT
1 TTTTATAATTTTAT
26241675 AATTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTATAATTTTAT
Found at i:26241687 original size:14 final size:15
Alignment explanation
Indices: 26241645--26241687 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
26241635 GGGGTGTTAC
26241645 AATTTTATAATTT-T
1 AATTTTATAATTTAT
*
26241659 ATTTTTATAATTTTAT
1 AATTTTATAA-TTTAT
26241675 AATTTTA-AATTTA
1 AATTTTATAATTTA
26241688 GCGAAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.52
15 5 0.20
16 7 0.28
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
AATTTTATAATTTAT
Found at i:26241687 original size:22 final size:22
Alignment explanation
Indices: 26241645--26241687 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26241635 GGGGTGTTAC
**
26241645 AATTTTATAATTTTATTTTTAT
1 AATTTTATAATTTTAAATTTAT
26241667 AATTTTATAATTTTAAATTTA
1 AATTTTATAATTTTAAATTTA
26241688 GCGAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
AATTTTATAATTTTAAATTTAT
Found at i:26242616 original size:9 final size:9
Alignment explanation
Indices: 26242598--26242629 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
26242588 AACTTTGGAT
26242598 CATAACTTA
1 CATAACTTA
*
26242607 CATGACTTA
1 CATAACTTA
26242616 CATAACTTA
1 CATAACTTA
26242625 CATAA
1 CATAA
26242630 ATATATATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.44, C:0.22, G:0.03, T:0.31
Consensus pattern (9 bp):
CATAACTTA
Found at i:26243798 original size:15 final size:15
Alignment explanation
Indices: 26243778--26243810 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
26243768 CACCCCAGTT
26243778 ACAGATACAGA-AATA
1 ACAGATACA-ATAATA
26243793 ACAGATACAATAATA
1 ACAGATACAATAATA
26243808 ACA
1 ACA
26243811 TGCATAACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.06
15 16 0.94
ACGTcount: A:0.61, C:0.15, G:0.09, T:0.15
Consensus pattern (15 bp):
ACAGATACAATAATA
Found at i:26250669 original size:40 final size:40
Alignment explanation
Indices: 26250594--26250801 Score: 285
Period size: 40 Copynumber: 5.2 Consensus size: 40
26250584 TCTGCGGAAT
* ** *
26250594 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
26250633 TTAACACGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
26250673 TTAGCCCGAATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
26250713 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
26250753 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
26250793 TTAGCCCGG
1 TTAGCCCGG
26250802 GTATCATTCA
Statistics
Matches: 150, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 3 0.02
40 146 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:26257956 original size:40 final size:40
Alignment explanation
Indices: 26257896--26258098 Score: 300
Period size: 40 Copynumber: 5.1 Consensus size: 40
26257886 GGAATTTAGA
* ** * *
26257896 CGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* *
26257936 CGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
26257976 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
26258016 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
26258056 CGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
26258096 CGG
1 CGG
26258099 GTATCATTCA
Statistics
Matches: 150, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 149 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:26259157 original size:22 final size:22
Alignment explanation
Indices: 26259132--26259181 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
26259122 AACCGTTCTA
26259132 TCTACGA-AGTTGAGTCGTCCTG
1 TCTACGACA-TTGAGTCGTCCTG
*
26259154 TCTATGACATTGAGTCGTCCTG
1 TCTACGACATTGAGTCGTCCTG
26259176 TCTACG
1 TCTACG
26259182 GTGTTGAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (22 bp):
TCTACGACATTGAGTCGTCCTG
Found at i:26261112 original size:43 final size:43
Alignment explanation
Indices: 26260988--26261113 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
26260978 TGTTTGTGGG
* *
26260988 GAAAGCACCACTAAAGGTCATGTTCTATAGCGGCGTTTGTGGA
1 GAAAGCACCACTAAAGGTCATGTTCTATAGCGGCATTTTTGGA
* ** * * *
26261031 AAAAGCGTCTCTAAAGGTCATGTTATATAGCGGGATTTTTGTGA
1 GAAAGCACCACTAAAGGTCATGTTCTATAGCGGCATTTTTG-GA
*
26261075 GAAA-CACCGCTAAAGGTCATGTTCTATAGCGGCATTTTT
1 GAAAGCACCACTAAAGGTCATGTTCTATAGCGGCATTTTT
26261114 CCACATAAAC
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 63 0.93
44 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GAAAGCACCACTAAAGGTCATGTTCTATAGCGGCATTTTTGGA
Found at i:26263449 original size:121 final size:121
Alignment explanation
Indices: 26263231--26263449 Score: 305
Period size: 121 Copynumber: 1.8 Consensus size: 121
26263221 AATTATGTGG
* * * * * * * *
26263231 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
* **
26263296 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
26263352 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
26263417 CTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 CTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
26263450 ATCCGGGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 1 0.01
121 83 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (121 bp):
AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:26263573 original size:40 final size:40
Alignment explanation
Indices: 26263408--26263575 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
26263398 AAATTGAATG
* * * ***
26263408 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGGTT
* * * *
26263448 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * *
26263488 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
*
26263528 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTT
26263568 ATATCCGG
1 ATATCCGG
26263576 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
Found at i:26271488 original size:121 final size:121
Alignment explanation
Indices: 26271270--26271488 Score: 305
Period size: 121 Copynumber: 1.8 Consensus size: 121
26271260 AATTATGTGG
* * * * * * * *
26271270 AATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
* **
26271335 CTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
26271391 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATATCCGGG
1 AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
*
26271456 CTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 CTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
26271489 ATCCGGGTTA
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
120 1 0.01
121 83 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.35
Consensus pattern (121 bp):
AATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGAAATTGAATGATACCCGGG
CTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:26271612 original size:40 final size:40
Alignment explanation
Indices: 26271447--26271614 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
26271437 AAATTGAATG
* * * ***
26271447 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGGTT
* * * *
26271487 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
* * *
26271527 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
*
26271567 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGGTT
26271607 ATATCCGG
1 ATATCCGG
26271615 TTGTATTCCG
Statistics
Matches: 104, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGGTT
Found at i:26275460 original size:21 final size:21
Alignment explanation
Indices: 26275433--26275494 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26275423 TCTTTGTGAG
26275433 TAAATATTCTTTTATTCTTTA
1 TAAATATTCTTTTATTCTTTA
* * *
26275454 TATATATTCTTTTGACTCTTTT
1 TAAATATTCTTTT-ATTCTTTA
* *
26275476 TAAATATGCTTTCATTCTT
1 TAAATATTCTTTTATTCTT
26275495 CATTCATGAT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 17 0.52
22 16 0.48
ACGTcount: A:0.24, C:0.13, G:0.03, T:0.60
Consensus pattern (21 bp):
TAAATATTCTTTTATTCTTTA
Found at i:26275482 original size:22 final size:21
Alignment explanation
Indices: 26275433--26275487 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
26275423 TCTTTGTGAG
*
26275433 TAAATATTCTTTTATTCTTTA
1 TAAATATTCTTTTACTCTTTA
* *
26275454 TATATATTCTTTTGACTCTTTT
1 TAAATATTCTTTT-ACTCTTTA
*
26275476 TAAATATGCTTT
1 TAAATATTCTTT
26275488 CATTCTTCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.60
Consensus pattern (21 bp):
TAAATATTCTTTTACTCTTTA
Found at i:26276886 original size:7 final size:7
Alignment explanation
Indices: 26276866--26276901 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
26276856 CTTTGAAACC
26276866 TAAAAAA
1 TAAAAAA
26276873 TTAAAAAAA
1 -T-AAAAAA
26276882 TAAAAAA
1 TAAAAAA
26276889 TAAAAAA
1 TAAAAAA
26276896 TAAAAA
1 TAAAAA
26276902 GAGAAAAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 19 0.70
8 2 0.07
9 6 0.22
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
TAAAAAA
Found at i:26278070 original size:64 final size:64
Alignment explanation
Indices: 26277997--26278124 Score: 220
Period size: 64 Copynumber: 2.0 Consensus size: 64
26277987 TCATTCATAA
*
26277997 CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCTTAATCATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCCTAATCATTTGACATAAGCAT
* * *
26278061 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCCTAATCATTTGACATAAGCAT
26278125 AGATACATGA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATCTCGATCATAGCATCCTAATCATTTGACATAAGCAT
Found at i:26278422 original size:131 final size:131
Alignment explanation
Indices: 26278196--26278725 Score: 803
Period size: 131 Copynumber: 4.1 Consensus size: 131
26278186 ATTTGCAAAC
* * * *
26278196 CTTGTCTCCCTGAAGTTGCAGTGGAACACATCGAAGACGGTGAATCTTGCCTTCTTAACCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGCCTCCCTAACCAGTAG
* * * *
26278261 TAGAGCAGATTAAAGCCACTATTCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
66 TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
26278326 T
131 T
* *
26278327 CTTGTCTTCCTGAAGTTGCAGTGGAACAGATCGAAGATGGCGAATCTTGCCTCCCTAACCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGCCTCCCTAACCAGTAG
*
26278392 TGGAGTAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
66 TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
26278457 T
131 T
* * * *
26278458 CTTGTCTCCCTGAAGTTGTAGTGGAACAGATCTAAGACGGTGAATCTTTCCTCCCTAACCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGCCTCCCTAACCAGTAG
* *
26278523 TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTTGAGTAGGCTAAAGATTACAGA
66 TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
26278588 T
131 T
* * * * *
26278589 CTTGTCTCCTTAAAGTGGCAGTGGAACAGATCGAACACGGCGAATCTTGCCTCCTTAACCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGCCTCCCTAACCAGTAG
* * * *
26278654 TGGAGTAGATTGAAGACACCATCCTATCTCCCTAAGTAGTAGTGGAGTAGGC-CAA-ATTGCAGA
66 TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
26278717 T
131 T
*
26278718 CTTATCTC
1 CTTGTCTC
26278726 TCTAAATAGT
Statistics
Matches: 363, Mismatches: 36, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
129 15 0.04
130 2 0.01
131 346 0.95
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (131 bp):
CTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGCCTCCCTAACCAGTAG
TGGAGCAGATTGAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
T
Found at i:26278563 original size:42 final size:43
Alignment explanation
Indices: 26278377--26278565 Score: 118
Period size: 42 Copynumber: 4.4 Consensus size: 43
26278367 CGAATCTTGC
* *
26278377 CTCCCTAACCAGTAGTGGAGTAGATTGAAG-CCACCATCCTAT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCATCCTAT
* ** * * * * *
26278419 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCA-GATCTTGT
1 CTCCCTAAGCAGTAGTGGAGCAGATTGAAGA--CCACCATCCTAT
** * **** *
26278463 CTCCCTGAAGTTGTAGTGGAACAGATCT-AAGACGGTGAAT-CTTT
1 CTCCCT-AAGCAGTAGTGGAGCAGAT-TGAAGAC-CACCATCCTAT
*
26278507 CCTCCCTAACCAGTAGTGGAGCAGATTGAAG-CCACCATCCTAT
1 -CTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCATCCTAT
26278550 CTCCCTAAGCAGTAGT
1 CTCCCTAAGCAGTAGT
26278566 TGAGTAGGCT
Statistics
Matches: 107, Mismatches: 30, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
42 43 0.40
43 5 0.05
44 31 0.29
45 27 0.25
46 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (43 bp):
CTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCATCCTAT
Found at i:26278920 original size:44 final size:45
Alignment explanation
Indices: 26278772--26279045 Score: 160
Period size: 44 Copynumber: 6.2 Consensus size: 45
26278762 TTTAACCCCT
* *
26278772 TAAGCAGTAG-GGTAACAGGCTGAAAATTACAGATCTTATCTTCC
1 TAAGCAGTAGTGGTAACAGGATGAAAATTACAGATCTTATCTCCC
* * * ** * * *
26278816 TAAGCAGTAGTAG--ACAAGATCGAAGACGA-TGAGCCTTA-CCCCC
1 TAAGCAGTAGTGGTAACAGGAT-GAAAATTACAGA-TCTTATCTCCC
*
26278859 TAAGCAGTAG-GGTAACAGGCTGAAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGTGGTAACAGGATGAAAATTACAGATCTTATCTCCC
* ** * * *
26278903 TAAGCAGTAGTGG-AACA-GATCGAAGACGA-TGAGCTTTAACTCCC
1 TAAGCAGTAGTGGTAACAGGAT-GAAAATTACAGATC-TTATCTCCC
* * * *
26278947 TAAGTAGTAG-GGTAACAGGCT-AGAAATTATAGATCTTATCTTCC
1 TAAGCAGTAGTGGTAACAGGATGA-AAATTACAGATCTTATCTCCC
* * * * *
26278991 TAAGCAGTAGTGG-AGCA-GATCAAAGATAACAAATCTTGTCTCCC
1 TAAGCAGTAGTGGTAACAGGATGAAA-ATTACAGATCTTATCTCCC
*
26279035 TAAGCAATAGT
1 TAAGCAGTAGT
26279046 AGAGCAGATT
Statistics
Matches: 169, Mismatches: 44, Indels: 34
0.68 0.18 0.14
Matches are distributed among these distances:
42 1 0.01
43 41 0.24
44 117 0.69
45 10 0.06
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (45 bp):
TAAGCAGTAGTGGTAACAGGATGAAAATTACAGATCTTATCTCCC
Found at i:26279010 original size:88 final size:87
Alignment explanation
Indices: 26278707--26279016 Score: 419
Period size: 88 Copynumber: 3.5 Consensus size: 87
26278697 GGAGTAGGCC
* ** ** * *
26278707 AAATTGCAGATCTTATC-TCTCTAAATAGTAACGGAGTAGATCGAAGACGGTGAGCTTTAACCCC
1 AAATTACAGATCTTATCTTC-CTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCTTTAACCCC
26278771 TTAAGCAGTAGGGTAACAGGCTGA
65 -TAAGCAGTAGGGTAACAGGCTGA
* * *
26278795 AAATTACAGATCTTATCTTCCTAAGCAGTAGTAGA-CAAGATCGAAGACGATGAGCCTTACCCCC
1 AAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGC-AGATCGAAGACGATGAGCTTTAACCCC
26278859 TAAGCAGTAGGGTAACAGGCTGA
65 TAAGCAGTAGGGTAACAGGCTGA
* *
26278882 AAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGAAGACGATGAGCTTTAACTCCC
1 AAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCTTTAAC-CCC
*
26278947 TAAGTAGTAGGGTAACAGGCT-A
65 TAAGCAGTAGGGTAACAGGCTGA
* *
26278969 GAAATTATAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCAAAGA
1 -AAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGA
26279017 TAACAAATCT
Statistics
Matches: 198, Mismatches: 19, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
87 79 0.40
88 117 0.59
89 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (87 bp):
AAATTACAGATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGATGAGCTTTAACCCCT
AAGCAGTAGGGTAACAGGCTGA
Found at i:26279541 original size:45 final size:45
Alignment explanation
Indices: 26279473--26279597 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
26279463 AAGCCATAAA
* * *
26279473 CCTTATCCCCCTGAAGTTACAGTGGGGCAGGTTGAAGTTACGAGT
1 CCTTATCCCCCTGAAGTTGCAGTGGGGCAGGCTGAAGTTACAAGT
*
26279518 CCTTA-CCCCTCTGAAGTTGCAGTGGGGCAAGCTGAAGTTACAAGT
1 CCTTATCCCC-CTGAAGTTGCAGTGGGGCAGGCTGAAGTTACAAGT
* * * *
26279563 -CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAA
1 CCTTATCCCCCTGAAGTTGCAGTGGGGCAGGCTGAA
26279598 AATAGCAGAT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
44 30 0.43
45 39 0.57
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
CCTTATCCCCCTGAAGTTGCAGTGGGGCAGGCTGAAGTTACAAGT
Found at i:26279597 original size:44 final size:43
Alignment explanation
Indices: 26279474--26279627 Score: 141
Period size: 45 Copynumber: 3.5 Consensus size: 43
26279464 AGCCATAAAC
* **
26279474 CTTATCCCCCTGAAGTTACAGTGGGGCAGGTTGAAGTTACGAGT
1 CTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGTTAC-AGT
26279518 CCTTA-CCCCTCTGAAGTTGCAGTGGGGCA-AGCTGAAGTTACAAGT
1 -CTTATCCCC-CTGAAGTTGCAGTGGGGCAGA-CTGAAGTTAC-AGT
* * * **
26279563 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAAATAGCAGAT
1 CTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGTTA-CAG-T
* *
26279608 CTTATCTCCTTGAAGTTGCA
1 CTTATCCCCCTGAAGTTGCA
26279628 ATAGAGCAGA
Statistics
Matches: 92, Mismatches: 11, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
44 34 0.37
45 58 0.63
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (43 bp):
CTTATCCCCCTGAAGTTGCAGTGGGGCAGACTGAAGTTACAGT
Found at i:26295124 original size:43 final size:42
Alignment explanation
Indices: 26295032--26295148 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 42
26295022 ATTACAGAGA
* *
26295032 TGTGATTACATGTAAGACCATGTTTGGGACATTGATATTGTAT
1 TGTGATTACGTGTAAGACCATGTCTGGGACATTGATATTG-AT
26295075 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTG-T
1 TGTGATTACGTGTAAGACCATGTCTGGGACATT-G-AT-ATTGAT
* **
26295119 T-TGATTATGTGTAAGACTTTGTCTGGGACA
1 TGTGATTACGTGTAAGACCATGTCTGGGACA
26295149 GAGGCATCGA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 57 0.86
44 3 0.05
45 2 0.03
46 4 0.06
ACGTcount: A:0.25, C:0.12, G:0.26, T:0.38
Consensus pattern (42 bp):
TGTGATTACGTGTAAGACCATGTCTGGGACATTGATATTGAT
Found at i:26301625 original size:39 final size:39
Alignment explanation
Indices: 26301571--26301752 Score: 256
Period size: 39 Copynumber: 4.6 Consensus size: 39
26301561 TGTGTATGAA
*
26301571 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26301610 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
26301649 GGTGCGAGCTATGATATCCGGGCTAAGCTCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26301688 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * *
26301728 TGTGCGGGTTATCATAACCGGGCTA
1 TGTGCGAGTTGTGATATCCGGGCTA
26301753 TGTCCTGAAG
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 96 0.76
40 30 0.24
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26306264 original size:18 final size:17
Alignment explanation
Indices: 26306241--26306274 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26306231 TAACTTTTTT
*
26306241 ATCAATCGCATTATTCAA
1 ATCAATC-CATAATTCAA
26306259 ATCAATCCATAATTCA
1 ATCAATCCATAATTCA
26306275 TGCTTTCGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.32
Consensus pattern (17 bp):
ATCAATCCATAATTCAA
Found at i:26313162 original size:26 final size:26
Alignment explanation
Indices: 26313126--26313235 Score: 202
Period size: 26 Copynumber: 4.2 Consensus size: 26
26313116 TGATACAAAT
*
26313126 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26313152 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26313178 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
26313204 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26313230 TGATAA
1 TGATAA
26313236 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26318932 original size:26 final size:26
Alignment explanation
Indices: 26318896--26319029 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
26318886 TGATACAAAT
* *
26318896 TGATAATAGGTTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26318922 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26318948 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
26318974 TGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
26318999 TGATAATGGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
26319024 TGATAA
1 TGATAA
26319030 GAATTTCATG
Statistics
Matches: 105, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
25 33 0.31
26 72 0.69
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:26319011 original size:51 final size:51
Alignment explanation
Indices: 26318896--26319029 Score: 225
Period size: 51 Copynumber: 2.6 Consensus size: 51
26318886 TGATACAAAT
*
26318896 TGATAATAGGTTAGGTAAATATTTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAAT-GTTCATGATAATAGGTTAGGTAAATGTTCCA
26318948 TGATAATAGGTTAGGTAAATGTTCCATGATAAT-GGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAATAGGTTAGGTAAATGTTCCA
*
26318999 TGATAATGGGTTAGGTAAATGTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCATGATAA
26319030 GAATTTCATG
Statistics
Matches: 79, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
50 8 0.10
51 42 0.53
52 29 0.37
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.36
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:26323816 original size:17 final size:17
Alignment explanation
Indices: 26323794--26323828 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26323784 CAAAATTTGA
*
26323794 TATTTCGTGTTAAACTT
1 TATTTCGTATTAAACTT
26323811 TATTTCGTATTAAACTT
1 TATTTCGTATTAAACTT
26323828 T
1 T
26323829 TGTTTGAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.09, T:0.54
Consensus pattern (17 bp):
TATTTCGTATTAAACTT
Found at i:26325328 original size:9 final size:9
Alignment explanation
Indices: 26325314--26325348 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
26325304 CAACCCACAA
26325314 TATTTTTTT
1 TATTTTTTT
*
26325323 TATTTTTTG
1 TATTTTTTT
26325332 TATTTTTTTT
1 TA-TTTTTTT
26325342 TATTTTT
1 TATTTTT
26325349 GCACTTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.11, C:0.00, G:0.03, T:0.86
Consensus pattern (9 bp):
TATTTTTTT
Found at i:26325359 original size:19 final size:19
Alignment explanation
Indices: 26325318--26325359 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
26325308 CCACAATATT
* *
26325318 TTTTTTATTTTTTGTATTT
1 TTTTTTATTTTTTGCATTC
26325337 TTTTTTA-TTTTTGCACTTC
1 TTTTTTATTTTTTGCA-TTC
26325356 TTTT
1 TTTT
26325360 ATCGCTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.79
Consensus pattern (19 bp):
TTTTTTATTTTTTGCATTC
Found at i:26327538 original size:26 final size:26
Alignment explanation
Indices: 26327502--26327637 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
26327492 CATGAAATTC
26327502 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
**
26327528 TTATCATGAAACATTTACCTAATACA
1 TTATCATGAAACATTTACCTAACCCA
*
26327554 TTATCATAAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
26327580 TTATCATGAAACATTTACCTAACACA
1 TTATCATGAAACATTTACCTAACCCA
* *
26327606 TTATCATGAAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
26327632 TTATCA
1 TTATCA
26327638 ATTTGTATCA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:26332329 original size:23 final size:23
Alignment explanation
Indices: 26332299--26332366 Score: 111
Period size: 23 Copynumber: 3.0 Consensus size: 23
26332289 AAATTAAATC
26332299 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTACAAAATCATATCT
26332322 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTACAAAATCATATCT
* *
26332345 TCTAAGATTGC-ATATCATATCT
1 TCTAAGATTACAAAATCATATCT
26332367 AAGATAACAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
22 10 0.23
23 33 0.77
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.37
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATCT
Found at i:26332369 original size:19 final size:19
Alignment explanation
Indices: 26332345--26332489 Score: 221
Period size: 19 Copynumber: 7.9 Consensus size: 19
26332335 AATCATATCT
26332345 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
26332364 TCTAAGATAACA-ATCATA
1 TCTAAGATTGCATATCATA
26332382 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
26332399 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26332418 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
26332436 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
26332453 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26332472 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
26332490 TGAAGATTAT
Statistics
Matches: 114, Mismatches: 6, Indels: 12
0.86 0.05 0.09
Matches are distributed among these distances:
17 31 0.27
18 30 0.26
19 53 0.46
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26332426 original size:73 final size:71
Alignment explanation
Indices: 26332338--26332490 Score: 220
Period size: 73 Copynumber: 2.1 Consensus size: 71
26332328 ATTACAAAAT
*
26332338 CATATC-TTCTAAGATTGCATATCATATCTAAGATAACAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGAT-ACAATCATATATAAGATTGATATCATATC
26332401 TAAGATTG
64 TAAGATTG
***
26332409 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATATAAGATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATACAATCATATATAAGATTG-ATATCATATC
26332474 TAAGATTG
64 TAAGATTG
26332482 CATATCATT
1 CATATCATT
26332491 GAAGATTATA
Statistics
Matches: 74, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
71 21 0.28
72 16 0.22
73 37 0.50
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATACAATCATATATAAGATTGATATCATATCTA
AGATTG
Found at i:26332480 original size:54 final size:54
Alignment explanation
Indices: 26332347--26332489 Score: 250
Period size: 54 Copynumber: 2.6 Consensus size: 54
26332337 TCATATCTTC
** *
26332347 TAAGATTGCATATCATATCTAAGATAACAATCATATCTAAGATTGTATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATA
26332401 TAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATA
1 TAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATA
26332455 TAAGATTGCATATCATATCTAAGATTGCATATCAT
1 TAAGATTGCATATCATATCTAAGATTGCA-ATCAT
26332490 TGAAGATTAT
Statistics
Matches: 85, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 80 0.94
55 5 0.06
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (54 bp):
TAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATA
Found at i:26332885 original size:45 final size:45
Alignment explanation
Indices: 26332821--26332929 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
26332811 AGAAGGCGAT
* *
26332821 ATCTGCTATCTTTGATCTGCTTCCAATCTAATACAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCAATCTAATACAGAGACGCCAA
* ** *
26332866 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATATAGAGACGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCAATCTAATACAGAGACGCCAA
*
26332911 ATCTGCT-TCTTCAATCTGC
1 ATCTGCTATCTTCGATCTGC
26332930 CCTCTGACAA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 11 0.20
45 45 0.80
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGCTCCCAATCTAATACAGAGACGCCAA
Found at i:26333141 original size:86 final size:86
Alignment explanation
Indices: 26333044--26333319 Score: 228
Period size: 86 Copynumber: 3.2 Consensus size: 86
26333034 ATGCCAAATC
26333044 ATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCG
1 ATCTTGGATCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCG
26333108 AAATAGAGATGCCAGATCTGTT
65 AAATAGAGATGCCAGATCTGTT
** * * * * *
26333130 ATCTTGGATCTGCTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-T
1 ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTGCTATG---T--ATCTGCTCT
* * * *
26333193 CC-TTGTAAACACAAGAATGCCAAATC----
59 CCGTCG-AAATA-GAG-ATGCCAGATCTGTT
* * * * *
26333219 ATCTTGGATTTGCTTCAGTATAAACATCTGAAGGCTAGACCTGCTATGTACCTGCTCTCTGTCGA
1 ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
*
26333284 AATGGAGAT-CCTAGATCTGTT
66 AATAGAGATGCC-AGATCTGTT
26333305 ATCTTGGATCTGCTT
1 ATCTTGGATCTGCTT
26333320 TGGTGTGAGA
Statistics
Matches: 142, Mismatches: 29, Indels: 38
0.68 0.14 0.18
Matches are distributed among these distances:
81 2 0.01
82 9 0.06
83 3 0.02
84 6 0.04
85 2 0.01
86 32 0.23
87 20 0.14
88 22 0.15
89 20 0.14
90 2 0.01
91 8 0.06
92 3 0.02
93 13 0.09
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (86 bp):
ATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGA
AATAGAGATGCCAGATCTGTT
Found at i:26333198 original size:175 final size:175
Alignment explanation
Indices: 26333003--26333468 Score: 748
Period size: 175 Copynumber: 2.7 Consensus size: 175
26332993 AAATTTGTTG
* * *
26333003 TGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTAAAAT
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAAT
*
26333068 CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATAGAGATGCCAGATCTGTTATC
66 CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATC
26333133 TTGGATCTGCTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTA
131 TTGGATCTGCTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTA
*
26333178 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATTTGCTTCAGTATAAA
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTA-AAA
* * * *
26333243 -CATCTGAAGGCTAGACCTGCTATGTACCTGCTCTCTGTCGAAATGGAGAT-CCTAGATCTGTTA
65 TCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCC-AGATCTGTTA
*
26333306 TCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTA
129 TCTTGGATCTGCTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTA
* *
26333353 TGTTTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAACCATCTTGGATCTGCTTCAG-----T
1 TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAAT
*
26333413 CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATGCCAGA
66 CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGA
26333469 CTTCGATTTG
Statistics
Matches: 269, Mismatches: 18, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
170 48 0.18
171 2 0.01
174 2 0.01
175 214 0.80
176 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (175 bp):
TGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTAAAAT
CATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGATCTGTTATC
TTGGATCTGCTTTGGTATGAGAACATCCGAAAGTCAAATCTGCTA
Found at i:26334579 original size:14 final size:14
Alignment explanation
Indices: 26334556--26334619 Score: 65
Period size: 14 Copynumber: 4.5 Consensus size: 14
26334546 GGCGTCTCCA
*
26334556 TTTTTCTTTTTTCT
1 TTTTTTTTTTTTCT
26334570 TTTTTTTTTTTTCT
1 TTTTTTTTTTTTCT
* **
26334584 TTTTTTATTTTAAT
1 TTTTTTTTTTTTCT
**
26334598 TTTCTTTTTTTCCCT
1 TTT-TTTTTTTTTCT
26334613 TTTTTTT
1 TTTTTTT
26334620 GGAAATAGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
14 31 0.76
15 10 0.24
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTTTCT
Found at i:26334607 original size:7 final size:7
Alignment explanation
Indices: 26334556--26334588 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
26334546 GGCGTCTCCA
26334556 TTTTTCT
1 TTTTTCT
26334563 TTTTTCT
1 TTTTTCT
*
26334570 TTTTTTT
1 TTTTTCT
26334577 TTTTTCT
1 TTTTTCT
26334584 TTTTT
1 TTTTT
26334589 TATTTTAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTCT
Found at i:26334619 original size:19 final size:17
Alignment explanation
Indices: 26334555--26334608 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 17
26334545 TGGCGTCTCC
26334555 ATTTTTCTTT-TTTCTTTT
1 ATTTTT-TTTCTTT-TTTT
*
26334573 TTTTTTTTTCTTTTTTT
1 ATTTTTTTTCTTTTTTT
26334590 ATTTTAATTTTCTTTTTTT
1 ATTTT--TTTTCTTTTTTT
26334609 CCCTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 11 0.35
18 8 0.26
19 12 0.39
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (17 bp):
ATTTTTTTTCTTTTTTT
Found at i:26337305 original size:28 final size:30
Alignment explanation
Indices: 26337274--26337331 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 30
26337264 TCACCTTGGC
26337274 CTCTCCATT-TTTTC-TTTTT-CTTTTTTTT
1 CTCT-CATTATTTTCTTTTTTCCTTTTTTTT
**
26337302 CTCTTTTTATTTTCTTTTTTCCTTTTTTTT
1 CTCTCATTATTTTCTTTTTTCCTTTTTTTT
26337332 TTGAACTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 2 0.08
28 9 0.36
29 5 0.20
30 9 0.36
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (30 bp):
CTCTCATTATTTTCTTTTTTCCTTTTTTTT
Found at i:26344414 original size:40 final size:40
Alignment explanation
Indices: 26344355--26344535 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
26344345 TATTCGGATG
* *
26344355 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
26344395 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* * *
26344435 ATACCCGGGCTGAGACCCGAAGGTATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
* * * *
26344475 ATACCCGGGCTGAGACCCGAAGGCATTTGTGCGAGCTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
26344515 ATATCC-GGCTAA-ACCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
26344536 ATACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
Found at i:26347467 original size:19 final size:19
Alignment explanation
Indices: 26347443--26347568 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
26347433 AATCATATCT
*
26347443 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
26347462 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
26347480 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
26347497 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
26347515 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
26347532 TATAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
26347551 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
26347569 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
17 31 0.32
18 31 0.32
19 36 0.37
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:26347501 original size:35 final size:35
Alignment explanation
Indices: 26347443--26347560 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
26347433 AATCATATCT
*
26347443 TCTAAGATTGCATCTCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
26347480 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
26347515 TCTAAGATTGTATCATATATAAGATTGCATATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
26347551 TCTAAGATTG
1 TCTAAGATTG
26347561 CATATCATTG
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 52 0.67
36 16 0.21
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:26347576 original size:17 final size:19
Alignment explanation
Indices: 26347446--26347576 Score: 134
Period size: 17 Copynumber: 7.3 Consensus size: 19
26347436 CATATCTTCT
* *
26347446 AAGATTGCATCTCATATCT
1 AAGATTGCATATCATATCG
*
26347465 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
26347483 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
26347500 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
**
26347518 AAGATTG--TATCATATAT
1 AAGATTGCATATCATATCG
*
26347535 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
26347554 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
26347571 AAGATT
1 AAGATT
26347577 ATATTTTCAT
Statistics
Matches: 102, Mismatches: 4, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
17 37 0.36
18 32 0.31
19 33 0.32
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:26350206 original size:260 final size:261
Alignment explanation
Indices: 26349728--26350216 Score: 854
Period size: 260 Copynumber: 1.9 Consensus size: 261
26349718 GGATTACTTT
26349728 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
* * *
26349793 TTTGCCCTTCAGTACCTAGTAGTCTACCATTGGAGTGAATAATTTGTTTTCACTCCTAGGTTGGT
66 TTTGCCATTCAGTACCTAGTAGCCTACCATTGGAGTGAATAATTTGTTTTCACTCCTAGGTTAGT
26349858 CCCTACAAAACTAGCTATTTGGATAATACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
131 CCCTACAAAACTAGCTATTTGGATAATACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
* *
26349923 GATAGATAGATTTGTCGTCCGATATATCC-TTCTTTGTCAATGGATTCTCTCTATCACCTCTTTT
196 GATAGATAGATCTGTCATCCGATATATCCATTCTTTGTCAATGGATTCTCTCTATCACCTCTTTT
26349987 C
261 C
26349988 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
1 CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
*** *
26350053 TTTTTGATTTAGTACCTAGTAGCCTACCATTGGAGTGAATAATTTGTTTTCACTCCTAGGTTAGT
66 TTTGCCATTCAGTACCTAGTAGCCTACCATTGGAGTGAATAATTTGTTTTCACTCCTAGGTTAGT
* * *
26350118 CCCTACAAAGCTAGCTATTTGGATAGTACATTCCCAGTGGTTGTCCACTTTAAGGGAATGGTCTT
131 CCCTACAAAACTAGCTATTTGGATAATACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
*
26350183 GATAGGTAGATCTGTCATCCGATATATCCATTCT
196 GATAGATAGATCTGTCATCCGATATATCCATTCT
26350217 CTTGCACCTA
Statistics
Matches: 215, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
260 211 0.98
261 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (261 bp):
CTCGTAATCCACCTTATTCTCGTTACCCCACACGTAGTGTGGCATATCCGTGAGTGGTGGTTCAC
TTTGCCATTCAGTACCTAGTAGCCTACCATTGGAGTGAATAATTTGTTTTCACTCCTAGGTTAGT
CCCTACAAAACTAGCTATTTGGATAATACATTCCCAGTGGTTGTCCACTTTAAGGAAATGGTCTT
GATAGATAGATCTGTCATCCGATATATCCATTCTTTGTCAATGGATTCTCTCTATCACCTCTTTT
C
Found at i:26350795 original size:28 final size:27
Alignment explanation
Indices: 26350716--26350833 Score: 139
Period size: 27 Copynumber: 4.3 Consensus size: 27
26350706 ATCATCCTGG
26350716 CAGACTACTCC-GTGTTTAATGTCCCAT
1 CAGACTA-TCCTGTGTTTAATGTCCCAT
***
26350743 CAGACTATCCTGTGTTTAGCATCCCAT
1 CAGACTATCCTGTGTTTAATGTCCCAT
* *
26350770 CGGGACTATCTTGTGTTTAATGTCCCAT
1 C-AGACTATCCTGTGTTTAATGTCCCAT
**
26350798 CAGACTATCCCATGTTTAATGTCCCAT
1 CAGACTATCCTGTGTTTAATGTCCCAT
*
26350825 CACACTATC
1 CAGACTATC
26350834 TTCGATGTCA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.04
27 51 0.67
28 22 0.29
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (27 bp):
CAGACTATCCTGTGTTTAATGTCCCAT
Found at i:26355276 original size:8 final size:8
Alignment explanation
Indices: 26355263--26355287 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26355253 AGGGTTCTTT
26355263 GTTTTCGG
1 GTTTTCGG
26355271 GTTTTCGG
1 GTTTTCGG
26355279 GTTTTCGG
1 GTTTTCGG
26355287 G
1 G
26355288 ATTTAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.40, T:0.48
Consensus pattern (8 bp):
GTTTTCGG
Found at i:26356042 original size:23 final size:22
Alignment explanation
Indices: 26356003--26356055 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
26355993 AATTATAATC
* *
26356003 AATTTTTATTTTTTCAA-CACTT
1 AATTTTTAGTTTATCAAGC-CTT
26356025 AATTTTTAAGTTTATCAAGCCTT
1 AATTTTT-AGTTTATCAAGCCTT
26356048 AATGTTTT
1 AAT-TTTT
26356056 TTTTGTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 7 0.27
23 14 0.54
24 5 0.19
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.55
Consensus pattern (22 bp):
AATTTTTAGTTTATCAAGCCTT
Found at i:26361197 original size:35 final size:37
Alignment explanation
Indices: 26361121--26361218 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
26361111 ATTACCTTTA
26361121 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
*
26361159 ATGATA-CAATCTTAGATATGAT-TGCAGTCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
26361194 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
26361219 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.34
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:26361218 original size:17 final size:19
Alignment explanation
Indices: 26361121--26361211 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
26361111 ATTACCTTTA
26361121 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26361140 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26361159 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
26361176 ATGAT-TGCAGTCTTAGAT
1 ATGATATGCAATCTTAGAT
26361194 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26361212 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26361237 original size:22 final size:22
Alignment explanation
Indices: 26361121--26361234 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
26361111 ATTACCTTTA
26361121 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26361140 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26361159 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
26361176 ATGAT-TGCAGTCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26361194 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26361216 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26361235 GATTTAATTT
Statistics
Matches: 84, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.19
18 15 0.18
19 33 0.39
22 8 0.10
23 12 0.14
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26361522 original size:18 final size:17
Alignment explanation
Indices: 26361499--26361532 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26361489 TGTTTCCCTT
*
26361499 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
26361517 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
26361533 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:26371823 original size:78 final size:78
Alignment explanation
Indices: 26371741--26372005 Score: 424
Period size: 78 Copynumber: 3.4 Consensus size: 78
26371731 AACAGAGAGT
* * * *
26371741 AGATCAAAGATATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTATT
1 AGATCAAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
26371806 TTAGACGGGGAGC
66 TTAGACGGGGAGC
* *
26371819 AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
1 AGATCAAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
26371884 TTAGACGGGGAGC
66 TTAGACGGGGAGC
* * *
26371897 AGATCGAAGACATAACAGAT-TGGACCTTCATTAAAGTAGATCCAAGATGATTTGGCATCTCTGT
1 AGATCAAAGACATAACAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGT
26371961 ATTAGACGGGGAGC
65 ATTAGACGGGGAGC
*
26371975 AGATCAAAGACATAGCAGATCTGACCTTCAT
1 AGATCAAAGACATAACAGATCTGACCTTCAT
26372006 GTGTTTACAT
Statistics
Matches: 174, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 1 0.01
78 172 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
AGATCAAAGACATAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
TTAGACGGGGAGC
Found at i:26372145 original size:44 final size:45
Alignment explanation
Indices: 26371945--26372217 Score: 241
Period size: 45 Copynumber: 6.1 Consensus size: 45
26371935 GATCCAAGAT
* * * *
26371945 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAG--ATAACA
* * * * * * * *
26371992 GATCTGACCT-TCATGTGTTTACATCGA--AGCAAATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGAT-GAGGAGCAGATCGAAGATAACA
* * *
26372037 GGTTTGGCATCTCTGTATTAGATGAGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGATAACA
* * * *
26372082 GATTTGGCATCTCTATATTAGATGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGATAACA
* *
26372126 GATTTGGCATCTCTGTATTAGA-CAGGAGCAGATCTAAGATAACA
1 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGATAACA
* * * *
26372170 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGATAACA
26372215 GAT
1 GAT
26372218 ATCGCCTTCC
Statistics
Matches: 181, Mismatches: 37, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
43 15 0.08
44 54 0.30
45 83 0.46
46 4 0.02
47 20 0.11
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGATGAGGAGCAGATCGAAGATAACA
Found at i:26372189 original size:88 final size:90
Alignment explanation
Indices: 26372039--26372217 Score: 272
Period size: 88 Copynumber: 2.0 Consensus size: 90
26372029 AGATGACAGG
* *
26372039 TTTGGCATCTCTGTATTAGATGAGGAGCAAATCGGAGATAACAGATTTGGCATCTCTATATTAGA
1 TTTGGCATCTCTGTATTAGATCAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAGA
* **
26372104 TGGGGAGCAGATTGAAGA-AGCAGA
66 CGGGGAGCAGATCAAAGATAGCAGA
* * *
26372128 TTTGGCATCTCTGTATTAGA-CAGGAGCAGATCTAAGATAACAGATTTGGCATCTCTGTATTAGA
1 TTTGGCATCTCTGTATTAGATCAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAGA
26372192 CGGGGAGCAGATCAAAGATAGCAGA
66 CGGGGAGCAGATCAAAGATAGCAGA
26372217 T
1 T
26372218 ATCGCCTTCC
Statistics
Matches: 81, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
88 54 0.67
89 27 0.33
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (90 bp):
TTTGGCATCTCTGTATTAGATCAGGAGCAAATCGAAGATAACAGATTTGGCATCTCTATATTAGA
CGGGGAGCAGATCAAAGATAGCAGA
Found at i:26372616 original size:19 final size:19
Alignment explanation
Indices: 26372568--26372622 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
26372558 ATTATCTTCA
26372568 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26372587 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
26372605 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
26372623 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:26372648 original size:22 final size:22
Alignment explanation
Indices: 26372568--26372645 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 22
26372558 ATTATCTTCA
26372568 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26372587 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
26372605 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
26372627 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
26372646 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 18 0.35
19 14 0.27
22 8 0.15
23 12 0.23
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:26376316 original size:46 final size:46
Alignment explanation
Indices: 26376264--26376399 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
26376254 GCTCTCTGAA
* * *
26376264 ATGAAATGTGTAAGACAATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26376310 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
26376356 A-GAAAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
26376400 TCGAAGATAA
Statistics
Matches: 77, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 1 0.01
46 76 0.99
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26384663 original size:20 final size:19
Alignment explanation
Indices: 26384638--26384703 Score: 55
Period size: 20 Copynumber: 3.3 Consensus size: 19
26384628 AGTGCCTAGG
26384638 CCATGTGGG-GGTCACCACAC
1 CCATGTGGGAGG-CA-CACAC
*
26384658 CCATGTAGGGAGGCACACAG
1 CCATGT-GGGAGGCACACAC
*
26384678 CCATGTGGCTAAGGCACAC-C
1 CCATGTGG--GAGGCACACAC
26384698 CCATGT
1 CCATGT
26384704 AAGCTGAGGT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 2 0.05
20 22 0.56
21 13 0.33
22 2 0.05
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.15
Consensus pattern (19 bp):
CCATGTGGGAGGCACACAC
Found at i:26385382 original size:22 final size:22
Alignment explanation
Indices: 26385344--26385386 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26385334 TTTCATATCA
*
26385344 AAAATAAAAAATAAAAATAAAC
1 AAAACAAAAAATAAAAATAAAC
26385366 AAAACAAATAAAT-AAAATAAA
1 AAAACAAA-AAATAAAAATAAA
26385387 ATCTAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (22 bp):
AAAACAAAAAATAAAAATAAAC
Found at i:26386876 original size:3 final size:3
Alignment explanation
Indices: 26386868--26387155 Score: 150
Period size: 3 Copynumber: 96.0 Consensus size: 3
26386858 AAAAATAGAA
* * * *
26386868 AAT AAT AAT -AT ATT AAT AAG AAT TAT AAT AAT ATAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * ** *
26386913 AACA AAT AAT AA- AA- AAT AAC AAT GGGTT AAT AA- AGAT AAT AGT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT --AAT AAT AAT A-AT AAT AAT AAT
* * *
26386959 AAT AGAT -GT AA- AAC AAT AAT AAT AAT AA- ATAT AAT AAT AGT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
** * * *
26387003 AAT AAT -AT GCT AAAT AAT AGT AGT AA- AA- AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
26387046 AAG AAT ATT AAT AAT AGT AAT AAT AAC AAT AAT -AT AAAT AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT A-AT
* * *
26387092 ATAT GA- AAT AAT AAT AAC AAT AAT AAT AAT AAT AAAT AAT AGT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* *
26387138 GAT AAT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT
26387156 TAATTTGAAA
Statistics
Matches: 216, Mismatches: 48, Indels: 42
0.71 0.16 0.14
Matches are distributed among these distances:
2 20 0.09
3 174 0.81
4 21 0.10
5 1 0.00
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Done.