Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 91 of 770
Found at i:26580827 original size:11 final size:11
Alignment explanation
Indices: 26580811--26580846 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
26580801 AGAATACTAA
26580811 AAAAAAAAAAG
1 AAAAAAAAAAG
26580822 AAAAAAAAAAG
1 AAAAAAAAAAG
*
26580833 AAAAGAAAGAAG
1 AAAA-AAAAAAG
26580845 AA
1 AA
26580847 GCATAAGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 15 0.65
12 8 0.35
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:26580830 original size:16 final size:16
Alignment explanation
Indices: 26580809--26580840 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26580799 TAAGAATACT
26580809 AAAAAAAAAAAAGAAA
1 AAAAAAAAAAAAGAAA
*
26580825 AAAAAAAGAAAAGAAA
1 AAAAAAAAAAAAGAAA
26580841 GAAGAAGCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAGAAA
Found at i:26585516 original size:41 final size:41
Alignment explanation
Indices: 26585454--26585698 Score: 366
Period size: 41 Copynumber: 6.0 Consensus size: 41
26585444 TGTAAAACAT
* * * *
26585454 AGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAA-AC
1 AGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAGCC
* ** * * *
26585495 AGAGCAATAATGGTGTATTTTGTTAAAACGCCGCTAAAAGCC
1 AGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAGCC
*
26585537 AGAGCATTAGCGGCGCTTTTGGTAAATCGCCGCTAAAAGCC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
26585578 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
26585619 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
26585660 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAG
1 AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAG
26585699 TCATATAACC
Statistics
Matches: 190, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 178 0.94
42 12 0.06
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (41 bp):
AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGCC
Found at i:26586033 original size:14 final size:15
Alignment explanation
Indices: 26586001--26586036 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
26585991 TATTTTAAGT
*
26586001 TTTATGGATTATAGG
1 TTTAGGGATTATAGG
26586016 TTTAGGGATTAT-GG
1 TTTAGGGATTATAGG
26586030 TTTAGGG
1 TTTAGGG
26586037 GTTAGGGGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 9 0.45
15 11 0.55
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (15 bp):
TTTAGGGATTATAGG
Found at i:26586302 original size:21 final size:22
Alignment explanation
Indices: 26586253--26586303 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
26586243 ATGATTAAGG
*
26586253 GTTTAAGGTTTATGAGTTACTA
1 GTTTAAGGTTTATGAGTCACTA
*
26586275 TTTTAAGGTTTATGTA-TCA-TA
1 GTTTAAGGTTTATG-AGTCACTA
26586296 GTTTAAGG
1 GTTTAAGG
26586304 GTTAGAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 9 0.36
22 15 0.60
23 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (22 bp):
GTTTAAGGTTTATGAGTCACTA
Found at i:26586320 original size:7 final size:7
Alignment explanation
Indices: 26586310--26586341 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
26586300 AAGGGTTAGA
26586310 GGTTATG
1 GGTTATG
26586317 GGTTATG
1 GGTTATG
26586324 GGTTATG
1 GGTTATG
26586331 GGTTATG
1 GGTTATG
26586338 GGTT
1 GGTT
26586342 TAGGGTTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.44, T:0.44
Consensus pattern (7 bp):
GGTTATG
Found at i:26586326 original size:21 final size:21
Alignment explanation
Indices: 26586296--26586349 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 21
26586286 ATGTATCATA
26586296 GTTTAAGGGTTA-GAGGTTATGG
1 GTTT-AGGGTTATG-GGTTATGG
26586318 G-TTATGGGTTATGGGTTATGG
1 GTTTA-GGGTTATGGGTTATGG
26586339 GTTTAGGGTTA
1 GTTTAGGGTTA
26586350 ATTGTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 1 0.03
21 23 0.79
22 5 0.17
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.41
Consensus pattern (21 bp):
GTTTAGGGTTATGGGTTATGG
Found at i:26591079 original size:39 final size:40
Alignment explanation
Indices: 26590979--26591160 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
26590969 TCGAATGATG
* * *
26590979 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
26591019 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
26591059 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
26591097 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
26591138 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26591161 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:26591124 original size:78 final size:80
Alignment explanation
Indices: 26590979--26591160 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
26590969 TCGAATGATG
* * * *
26590979 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
26591044 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
26591059 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
26591121 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
26591138 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26591161 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:26599119 original size:39 final size:40
Alignment explanation
Indices: 26599019--26599200 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
26599009 TCGAATGATG
* * *
26599019 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
26599059 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
26599099 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
26599137 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
26599178 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26599201 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:26599164 original size:78 final size:80
Alignment explanation
Indices: 26599019--26599200 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
26599009 TCGAATGATG
* * * *
26599019 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
26599084 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
26599099 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
26599161 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
26599178 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26599201 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:26602628 original size:25 final size:25
Alignment explanation
Indices: 26602583--26602630 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26602573 TTACAAACAG
* *
26602583 TGAATCAAATTGAAATCAATTTATT
1 TGAATCAAATTAAAATAAATTTATT
26602608 TGAAT-AAATTAAAATTAAATTTA
1 TGAATCAAATTAAAA-TAAATTTA
26602631 AATAATGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (25 bp):
TGAATCAAATTAAAATAAATTTATT
Found at i:26602761 original size:43 final size:43
Alignment explanation
Indices: 26602713--26602808 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 43
26602703 TGACTTTTAA
*
26602713 CGGCGTTTTT-GAGAAAAGCGTCGCTAAAGGTCGTGATCTATAG
1 CGGCGTTTTTAG-GAAAAGCGCCGCTAAAGGTCGTGATCTATAG
* *
26602756 CGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCGTGATCTTTAG
1 CGGCGTTTTTAGGAAAAGCGCCGCTAAAGGTCGTGATCTATAG
26602799 CGGCGTTTTT
1 CGGCGTTTTT
26602809 TCAAATAAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.29
Consensus pattern (43 bp):
CGGCGTTTTTAGGAAAAGCGCCGCTAAAGGTCGTGATCTATAG
Found at i:26612855 original size:22 final size:22
Alignment explanation
Indices: 26612827--26612870 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26612817 CACGCATGCG
26612827 ACCTAGCTACATATATCCCGTA
1 ACCTAGCTACATATATCCCGTA
26612849 ACCTAGCTACATATATCCCGTA
1 ACCTAGCTACATATATCCCGTA
26612871 GCTCTCTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.32, G:0.09, T:0.27
Consensus pattern (22 bp):
ACCTAGCTACATATATCCCGTA
Found at i:26617574 original size:63 final size:64
Alignment explanation
Indices: 26617393--26617644 Score: 201
Period size: 63 Copynumber: 3.9 Consensus size: 64
26617383 AATAATTTTG
* * * * *
26617393 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACA-TATATCCCGT
26617455 A
64 A
* * * * *
26617456 GCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATATATCCCG
26617521 TA
63 TA
* *
26617523 GCT-TCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCCC
26617587 GTA
62 GTA
* * * ** *
26617590 GCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACATA
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGTACCACCCATGCGACCTAGCTACATA
26617645 CCATCTGTAT
Statistics
Matches: 153, Mismatches: 23, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 46 0.30
64 2 0.01
65 1 0.01
66 38 0.25
67 23 0.15
68 41 0.27
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:26618143 original size:30 final size:30
Alignment explanation
Indices: 26618109--26618169 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26618099 TCCTTAACTC
26618109 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26618139 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26618169 A
1 A
26618170 GGCTTGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26619447 original size:7 final size:7
Alignment explanation
Indices: 26619431--26619495 Score: 64
Period size: 7 Copynumber: 9.0 Consensus size: 7
26619421 TTCATGAATG
26619431 TTAT-TA
1 TTATATA
26619437 TTATATA
1 TTATATA
26619444 TTATATA
1 TTATATA
26619451 -TATTATA
1 TTA-TATA
26619458 TTATAT-
1 TTATATA
26619464 TATATTATA
1 T-TA-TATA
26619473 TTATATA
1 TTATATA
26619480 TATAATATA
1 T-T-ATATA
26619489 TTATATA
1 TTATATA
26619496 AATAAGTAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 15
0.77 0.00 0.23
Matches are distributed among these distances:
6 7 0.14
7 28 0.55
8 9 0.18
9 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
TTATATA
Found at i:26619450 original size:2 final size:2
Alignment explanation
Indices: 26619438--26619495 Score: 60
Period size: 2 Copynumber: 33.0 Consensus size: 2
26619428 ATGTTATTAT
26619438 TA TA TA T- TA TA TA TA T- TA TA T- TA TA T- TA TA T- TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26619474 TA TA TA TA TA -A TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
26619496 AATAAGTAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
1 8 0.17
2 40 0.83
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:26619457 original size:5 final size:5
Alignment explanation
Indices: 26619440--26619494 Score: 85
Period size: 5 Copynumber: 11.0 Consensus size: 5
26619430 GTTATTATTA
*
26619440 TATAT TATA- TATAT TATAT TATAT TATAT TATAT TATAT ATATAA TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT -TATAT TATAT
26619490 TATAT
1 TATAT
26619495 AAATAAGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
4 4 0.09
5 38 0.83
6 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:26620808 original size:19 final size:15
Alignment explanation
Indices: 26620762--26620803 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
26620752 CGATGAATTT
*
26620762 ATTGAATTTATATTG
1 ATTGAAATTATATTG
26620777 ATTGAAATTATATTG
1 ATTGAAATTATATTG
26620792 ATTG-AATTATAT
1 ATTGAAATTATAT
26620804 AATATATGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:26621204 original size:23 final size:23
Alignment explanation
Indices: 26621174--26621260 Score: 94
Period size: 21 Copynumber: 4.0 Consensus size: 23
26621164 GCTTTATCGA
26621174 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
*
26621197 TCAGGCAC-CTAGTGTGTCGTA--
1 TCAGGCACTTTA-TGTGTCGTATT
* **
26621218 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
26621240 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
26621261 ACTAATCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
21 31 0.60
22 4 0.08
23 17 0.33
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:26621473 original size:18 final size:18
Alignment explanation
Indices: 26621452--26621498 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
26621442 TAACTGGTTA
* *
26621452 TTACTGAATATTTGATTG
1 TTACTGAATAATTGACTG
* *
26621470 TTACCGCATAATTGACTG
1 TTACTGAATAATTGACTG
26621488 TTACTGAATAA
1 TTACTGAATAA
26621499 ATAATTGTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:26625888 original size:5 final size:5
Alignment explanation
Indices: 26625878--26625931 Score: 90
Period size: 5 Copynumber: 10.6 Consensus size: 5
26625868 TGAATGTTAT
*
26625878 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATATA TAATA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TAT-TA TATTA TATTA
26625929 TAT
1 TAT
26625932 AAATAAGTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
5 42 0.91
6 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TATTA
Found at i:26627194 original size:15 final size:15
Alignment explanation
Indices: 26627174--26627230 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
26627164 CGATGAATTT
*
26627174 ATTGAATTTATATTG
1 ATTGAAATTATATTG
*
26627189 ATTGAAATTATTTTG
1 ATTGAAATTATATTG
26627204 ATTGAAATTATATTG
1 ATTGAAATTATATTG
26627219 ATTG-AATTATAT
1 ATTGAAATTATAT
26627231 AATATATGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 8 0.21
15 31 0.79
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:26627631 original size:23 final size:23
Alignment explanation
Indices: 26627601--26627687 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
26627591 GCTTTATCGA
* *
26627601 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTCATGTGTCGTATT
*
26627624 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
26627645 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
26627667 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
26627688 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
21 35 0.64
22 2 0.04
23 18 0.33
ACGTcount: A:0.15, C:0.22, G:0.25, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:26627900 original size:18 final size:18
Alignment explanation
Indices: 26627879--26627925 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
26627869 TAACTGGTTA
* *
26627879 TTACTGAATATTTGATTG
1 TTACTGAATAATTGACTG
* *
26627897 TTACCGCATAATTGACTG
1 TTACTGAATAATTGACTG
26627915 TTACTGAATAA
1 TTACTGAATAA
26627926 ATAATTGTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:26628971 original size:26 final size:26
Alignment explanation
Indices: 26628935--26628987 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26628925 GTACCATGAG
* *
26628935 AATGTGTATCGACTACCGTTAGTTGA
1 AATGTGTATCGACTACCATCAGTTGA
26628961 AATGTGTATCGACTACCATCAGTTGA
1 AATGTGTATCGACTACCATCAGTTGA
26628987 A
1 A
26628988 CAAGTTAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (26 bp):
AATGTGTATCGACTACCATCAGTTGA
Found at i:26631250 original size:38 final size:35
Alignment explanation
Indices: 26631191--26631308 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
26631181 TCAATCATGC
*
26631191 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
26631230 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
26631261 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
26631292 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
26631309 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:26631252 original size:31 final size:31
Alignment explanation
Indices: 26631214--26631308 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
26631204 CCTTTTCATA
*
26631214 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
26631245 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
26631276 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
26631307 TT
1 TT
26631309 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:26633489 original size:40 final size:39
Alignment explanation
Indices: 26633444--26633573 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
26633434 CGGAATACAA
26633444 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
26633484 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
26633524 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
26633564 CCGGATATAA
1 CCGGATATAA
26633574 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:26641508 original size:40 final size:39
Alignment explanation
Indices: 26641463--26641592 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
26641453 CGGAATACAA
26641463 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
26641503 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
26641543 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
26641583 CCGGATATAA
1 CCGGATATAA
26641593 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:26644242 original size:23 final size:22
Alignment explanation
Indices: 26644216--26644297 Score: 67
Period size: 23 Copynumber: 3.5 Consensus size: 22
26644206 TATTTCTTAG
26644216 TATTATATCTTATCATGTATTTT
1 TATTAT-TCTTATCATGTATTTT
* *
26644239 TATTATTCTT-TCACATTTTATATAT
1 TATTATTCTTAT--CA-TGTAT-TTT
*
26644264 TATTTAAGTCTTATCATGTATTTT
1 TA-TT-ATTCTTATCATGTATTTT
26644288 TATTATTCTT
1 TATTATTCTT
26644298 TCACATTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 15
0.69 0.09 0.22
Matches are distributed among these distances:
21 1 0.02
22 9 0.20
23 10 0.22
24 8 0.17
25 8 0.17
26 4 0.09
27 5 0.11
28 1 0.02
ACGTcount: A:0.26, C:0.10, G:0.04, T:0.61
Consensus pattern (22 bp):
TATTATTCTTATCATGTATTTT
Found at i:26644282 original size:49 final size:49
Alignment explanation
Indices: 26644223--26644321 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
26644213 TAGTATTATA
26644223 TCTTATCATGTATTTTTATTATTCTTTCACATTTTATATATTATTTAAG
1 TCTTATCATGTATTTTTATTATTCTTTCACATTTTATATATTATTTAAG
26644272 TCTTATCATGTATTTTTATTATTCTTTCACATTTTATATATTATTTAAG
1 TCTTATCATGTATTTTTATTATTCTTTCACATTTTATATATTATTTAAG
26644321 T
1 T
26644322 TATCGTGTAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.26, C:0.10, G:0.04, T:0.60
Consensus pattern (49 bp):
TCTTATCATGTATTTTTATTATTCTTTCACATTTTATATATTATTTAAG
Found at i:26644616 original size:20 final size:20
Alignment explanation
Indices: 26644574--26644617 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26644564 TATTGTGCCA
*
26644574 TATTTATTGTTGTTGTATAT
1 TATTTATTATTGTTGTATAT
*
26644594 TATTTATTCATTGTTTTAT-T
1 TATTTATT-ATTGTTGTATAT
26644614 TATT
1 TATT
26644618 ATATCAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.20, C:0.02, G:0.09, T:0.68
Consensus pattern (20 bp):
TATTTATTATTGTTGTATAT
Found at i:26648898 original size:46 final size:44
Alignment explanation
Indices: 26648824--26648996 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 44
26648814 TGTAACCCGC
*
26648824 CCATAAGTGAACTCGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
26648869 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
26648915 ACATCTCTCGAACTCGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
26648961 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGG
26648997 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 13, Indels: 17
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 22 0.21
46 70 0.66
47 6 0.06
48 3 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:26648938 original size:92 final size:92
Alignment explanation
Indices: 26648832--26649001 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 92
26648822 GCCCATAAGT
*
26648832 GAACTCGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26648896 CGAGCTCGGATGCCTAGTTACATCTCTC
65 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
26648924 GAACTCGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
26648989 GAGTTCGGATGCC
66 GAGCTCGGATGCC
26649002 CAAACATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 2 0.03
92 71 0.97
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (92 bp):
GAACTCGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:26649016 original size:46 final size:46
Alignment explanation
Indices: 26648874--26649016 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
26648864 CGCATCCATA
*
26648874 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * *
26648923 --CGAACTC-GACTCAACTCAACGAGTTCGGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
26648965 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
26649012 AGTGA
1 AGTGA
26649017 CATGTCACTT
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
41 1 0.01
42 6 0.08
44 2 0.03
45 6 0.08
46 48 0.63
47 7 0.09
48 6 0.08
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:26651426 original size:30 final size:30
Alignment explanation
Indices: 26651381--26651469 Score: 103
Period size: 30 Copynumber: 3.0 Consensus size: 30
26651371 CAAAGATAAC
26651381 AAGAAACCC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
*
26651410 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
* * *
26651440 AAGAGATCCAGGATAAAGAAA-CCTAAGATA
1 AAGAAACCCAGAATAAAGAAATCC-AAGATA
26651470 CGATACTATG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 12 0.24
30 37 0.73
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:26651429 original size:15 final size:15
Alignment explanation
Indices: 26651381--26651462 Score: 87
Period size: 15 Copynumber: 5.5 Consensus size: 15
26651371 CAAAGATAAC
26651381 AAGAAACCC-GAATA
1 AAGAAACCCAGAATA
*
26651395 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
26651410 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
26651425 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
* * *
26651440 AAGAGATCCAGGATA
1 AAGAAACCCAGAATA
26651455 AAGAAACC
1 AAGAAACC
26651463 TAAGATACGA
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
14 9 0.16
15 46 0.82
16 1 0.02
ACGTcount: A:0.56, C:0.17, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:26654527 original size:93 final size:93
Alignment explanation
Indices: 26654415--26654586 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
26654405 GCCCATAAGT
*** * *
26654415 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
26654480 CGAGCTCAGATGCCTAGTTACATCTCTC
66 CGAGCTCAGATGCCTAGTTACATCTCTC
* * *
26654508 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCTATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
* *
26654573 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
26654587 CAAACATCCT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:26654571 original size:46 final size:46
Alignment explanation
Indices: 26654409--26654582 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 46
26654399 TAACTCGCCC
*** * *
26654409 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCT
* * * *
26654455 ATAAGTGAACTTGGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-ATTTGCATCT
* * *
26654505 CT---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCT
* *
26654548 ATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
26654583 TGCCCAAACA
Statistics
Matches: 103, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 9 0.09
44 2 0.02
46 60 0.58
47 25 0.24
49 1 0.01
50 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCT
Found at i:26675215 original size:43 final size:45
Alignment explanation
Indices: 26675144--26675244 Score: 109
Period size: 43 Copynumber: 2.3 Consensus size: 45
26675134 TACCACCAGC
* * **
26675144 CTTATCTTTCTGAGATAGTAAGAGAGCAGGTTGAAGAATG-AG-T
1 CTTATCTTCCTGAGATAGCAAGAGAGCAGACTGAAGAATGAAGAT
* *
26675187 CTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCCTGAGATAGCAAGAG-AGCAGACTGAAGAATGAAGAT
*
26675232 CTTATCTCCCTGA
1 CTTATCTTCCTGA
26675245 AGTTGCAGCG
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 1 0.02
43 32 0.67
44 2 0.04
45 13 0.27
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.29
Consensus pattern (45 bp):
CTTATCTTCCTGAGATAGCAAGAGAGCAGACTGAAGAATGAAGAT
Found at i:26675458 original size:178 final size:177
Alignment explanation
Indices: 26675050--26676045 Score: 1271
Period size: 178 Copynumber: 5.6 Consensus size: 177
26675040 ATTGATAAAG
* * *
26675050 GAAGATCTTATCTCCCTGAAGTTGCAG-AGGAGCAGATCGAATATGGTGAATCTTATCTCCATGT
1 GAAGATCTTATCTCCCTAAAGTTGCAGCA-GAGCAGATCGAAGATGGCGAATCTTATCTCCATGT
* * * * * *
26675114 ATCGGTAATGGAGTAGATTTTACCACCAGCCTTATCTTTCTGAGATAGTAAGAGAGCAGGTTGAA
65 ATCGGCAATGGAGCAGATTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
* * *
26675179 GAA-TGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
130 GAATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
* * * * * * *
26675226 GAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCTAGGACGACAAATCTTATCTCCATGTA
1 GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
* * * * * * ** * * *
26675291 CCGGCAATGGAACAGATTTAAGTCACCAGCCTTATCTCCCTGAAATTGC-AGTGGAACAGGTTGA
66 TCGGCAATGGAGCAGATTTTA-CCGCCAGCCTTATCTCTCTGAGGTAGCAAG-AGAGCAGGTTGA
* * * * *
26675355 AGATATTG-GTTTTATCTTCCTGAGGTAGTAAGGAAGTAGACTAAAGATT
129 AGA-ATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
* * *
26675404 GAAGATTTTATCTCCCTAAAGTTGTAGCAGAACAGATCGAAGATGGCGAATCTTATCTCCATGTA
1 GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
* *
26675469 TCGGCAATGGAGCGGATTTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCGGGTTGAA
66 TCGGCAATGGAGCAGA-TTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
26675534 GAATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
130 GAATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
* * * * *
26675582 GAAGATCTTATCTCCCTAAAGTTGTAGCGGAGCAGATTGAAGAAGGCGAATCTTATCTCCATCTA
1 GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
* *
26675647 TCAGCAATGGAGCATATTTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
66 TCGGCAATGGAGCAGA-TTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAA
*
26675712 AAATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
130 GAATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
* * * * *
26675760 GAAGATTTTATCTCCCTAAAGTTGTAGCAGAGCAGATCGAAGAAGGCGAATCTTATTTCCATCTA
1 GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
* * * * *
26675825 TCAGCAATGTAGCAGATTCTACCGCCAGCCATATCTCTTTGAGGTAGCAAGAGAGCAGGTTGAAG
66 TCGGCAATGGAGCAGATTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
*
26675890 AATTAAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
131 AATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
* ** * * * *
26675937 GAAGATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGGATTTTATCTCCATGTA
1 GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
* * * *
26676002 TCGGCAATAGAGCATATTTTACCACCAGCCTTAATCTTTCTGAG
66 TCGGCAATGGAGCAGATTTTACCGCCAGCCTT-ATCTCTCTGAG
26676046 TAGTGGAGCA
Statistics
Matches: 715, Mismatches: 96, Indels: 16
0.86 0.12 0.02
Matches are distributed among these distances:
176 74 0.10
177 207 0.29
178 426 0.60
179 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
GAAGATCTTATCTCCCTAAAGTTGCAGCAGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTA
TCGGCAATGGAGCAGATTTTACCGCCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAG
AATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATT
Found at i:26678479 original size:16 final size:17
Alignment explanation
Indices: 26678447--26678480 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26678437 CATTGTCAAC
26678447 TTTAAAATGAATTTACA
1 TTTAAAATGAATTTACA
*
26678464 TTTAAAAT-ATTTTACA
1 TTTAAAATGAATTTACA
26678480 T
1 T
26678481 ATAATTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (17 bp):
TTTAAAATGAATTTACA
Found at i:26687872 original size:2 final size:2
Alignment explanation
Indices: 26687865--26687898 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26687855 TTTAAAATAA
26687865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26687899 GAATTTTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26696504 original size:24 final size:26
Alignment explanation
Indices: 26696486--26696573 Score: 81
Period size: 25 Copynumber: 3.5 Consensus size: 26
26696476 ACGAGCTGTA
26696486 AACGGTAAGCTCCTCCGAGCTGAAAT
1 AACGGTAAGCTCCTCCGAGCTGAAAT
* **
26696512 AATGGTAAGCTCCTTTGAGCTG-AAT
1 AACGGTAAGCTCCTCCGAGCTGAAAT
** * **
26696537 AACAATAAGCTCCTCTGAATTG-AAT
1 AACGGTAAGCTCCTCCGAGCTGAAAT
*
26696562 AACAGTAAGCTC
1 AACGGTAAGCTC
26696574 ATAAGAGCTA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
25 33 0.63
26 19 0.37
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (26 bp):
AACGGTAAGCTCCTCCGAGCTGAAAT
Found at i:26702379 original size:18 final size:18
Alignment explanation
Indices: 26702356--26702390 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26702346 AAATGCTATT
26702356 TTAATATTCT-ATATTTTC
1 TTAATATT-TAATATTTTC
26702374 TTAATATTTAATATTTT
1 TTAATATTTAATATTTT
26702391 AATATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
TTAATATTTAATATTTTC
Found at i:26702393 original size:8 final size:8
Alignment explanation
Indices: 26702352--26702403 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
26702342 ATAAAAATGC
26702352 TATTTTAA
1 TATTTTAA
*
26702360 TATTCTATA
1 TATTTTA-A
*
26702369 TTTTCTTAA
1 TATT-TTAA
26702378 TA-TTTAA
1 TATTTTAA
26702385 TATTTTAA
1 TATTTTAA
26702393 TATTTTAA
1 TATTTTAA
26702401 TAT
1 TAT
26702404 CTTCGTAAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
7 6 0.16
8 23 0.62
9 6 0.16
10 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (8 bp):
TATTTTAA
Found at i:26706005 original size:16 final size:16
Alignment explanation
Indices: 26705986--26706021 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26705976 AACCTAACCC
*
26705986 AAAAAAAAA-ACAAAG
1 AAAAAAAAAGAAAAAG
26706001 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
26706017 AAAAA
1 AAAAA
26706022 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:26706036 original size:16 final size:15
Alignment explanation
Indices: 26706017--26706051 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26706007 AAAGAAAAAG
* *
26706017 AAAAACTTACCCCAA
1 AAAAACCTAACCCAA
26706032 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
26706047 AAAAA
1 AAAAA
26706052 AAAGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.63, C:0.29, G:0.00, T:0.09
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:26708635 original size:12 final size:12
Alignment explanation
Indices: 26708618--26708653 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
26708608 ATTCATTTGA
26708618 CATTCATGCATT
1 CATTCATGCATT
26708630 CATTCATGCATT
1 CATTCATGCATT
*
26708642 CATTCATACATT
1 CATTCATGCATT
26708654 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:26714039 original size:71 final size:69
Alignment explanation
Indices: 26713845--26714108 Score: 323
Period size: 71 Copynumber: 3.7 Consensus size: 69
26713835 GAGTTAAGCC
* *
26713845 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
26713910 GAGGTAT
63 GAGGTAT
* * ** * *
26713917 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
26713981 AGGTAT
64 AGGTAT
*
26713987 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
26714052 AGGTAT
64 AGGTAT
* * ** * *
26714058 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
26714109 TTTAATTTTT
Statistics
Matches: 166, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 59 0.36
72 16 0.10
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:26714153 original size:122 final size:124
Alignment explanation
Indices: 26713987--26714233 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
26713977 GTTGAGGTAT
26713987 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
* *
26714052 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* * *
26714108 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACT
* * * *
26714173 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
26714233 T
1 T
26714234 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 12 0.11
122 59 0.52
123 1 0.01
124 13 0.12
125 28 0.25
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:26714194 original size:263 final size:257
Alignment explanation
Indices: 26713678--26714270 Score: 1033
Period size: 263 Copynumber: 2.3 Consensus size: 257
26713668 TTTCAAGGAA
*
26713678 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
26713743 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTTAGT
26713808 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
26713873 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
26713935 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
26714000 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACACTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTA---TT--T
26714065 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
26714130 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
26714195 TTT
255 TTT
* * * * * *
26714198 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
26714263 GTTTTCAA
64 GTTTTCAA
26714271 TTTACGTTGT
Statistics
Matches: 319, Mismatches: 9, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
257 119 0.37
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:26714229 original size:72 final size:71
Alignment explanation
Indices: 26714108--26714548 Score: 288
Period size: 72 Copynumber: 6.1 Consensus size: 71
26714098 GAGTTAAGCC
*
26714108 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
26714172 TGAGGTA
65 TGAGGTA
** * *
26714179 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
26714244 TGAGGTA
65 TGAGGTA
* * ** * * * * ** * *** *
26714251 TTTTCAATTTCTG-TTTT-CAATTTACGT--TGTT-CAAGA-ATCAACTCATATTGCGAGAGGTA
1 TTTTCAATTTTTGTTTTTAAAATCAAC-TCATATTGCGAGAGGTGAGTTGAGCCT-CG-G-GGCA
* * ***
26714310 GGTTGA-ACC
62 CGCTGAGGTA
** * * *
26714319 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTT-TTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACG
26714383 CTGAGGTA
64 CTGAGGTA
* * ** * * *
26714391 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCATCGGGGCAC
1 TTTTCAATTTTTGTT-T--TTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
26714456 GCTGAGGTA
63 GCTGAGGTA
* ** * * **
26714465 TTTTCAATTTTTATGTTTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GGCAC
*
26714530 GCCGAGGTA
63 GCTGAGGTA
26714539 TTTTCAATTT
1 TTTTCAATTT
26714549 CCGTTTTTCA
Statistics
Matches: 267, Mismatches: 81, Indels: 41
0.69 0.21 0.11
Matches are distributed among these distances:
66 5 0.02
67 10 0.04
68 8 0.03
69 13 0.05
70 6 0.02
71 15 0.06
72 108 0.40
73 16 0.06
74 85 0.32
75 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.37
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
GAGGTA
Found at i:26714562 original size:74 final size:72
Alignment explanation
Indices: 26714319--26714559 Score: 245
Period size: 74 Copynumber: 3.3 Consensus size: 72
26714309 AGGTTGAACC
* *
26714319 TTTT-AATTTCTACTTTTTCAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCT-GTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
26714383 CTGAGGTA
65 CTGAGGTA
* * * * * * *
26714391 ATTTCAATTTCTG-TTGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCATCGGGGCA
1 TTTTCAATTTCTGTTTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
26714455 CGCTGAGGTA
63 CGCTGAGGTA
* * ** * *
26714465 TTTTCAATTTTTATGTTTT-AATTTCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTTCAATTTCTGT-TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACA
*
26714529 CGCCGAGGTA
63 CGCTGAGGTA
*
26714539 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTTTTTCAA
26714560 TTTTGTCTTT
Statistics
Matches: 134, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
71 4 0.03
72 35 0.26
73 11 0.08
74 81 0.60
76 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTA
Found at i:26714677 original size:74 final size:76
Alignment explanation
Indices: 26714554--26714713 Score: 236
Period size: 74 Copynumber: 2.1 Consensus size: 76
26714544 AATTTCCGTT
* *
26714554 TTTCAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
*
26714617 CGCTGAGGTAA
66 CGCCGAGGTAA
* *
26714628 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAC
*
26714692 ACGCCGAGGTAT
65 ACGCCGAGGTAA
26714704 TTTCAATTTC
1 TTTCAATTTC
26714714 CGTTTTTCAA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
74 52 0.68
75 3 0.04
76 22 0.29
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (76 bp):
TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
CGCCGAGGTAA
Found at i:26714713 original size:76 final size:75
Alignment explanation
Indices: 26714553--26715271 Score: 244
Period size: 79 Copynumber: 9.1 Consensus size: 75
26714543 CAATTTCCGT
* *
26714553 TTTTCAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACA
*
26714617 CGCTGAGGTA
66 CGCCGAGGTA
* * *
26714627 ATTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--A
26714691 CACGCCGAGGTA
64 CACGCCGAGGTA
* * * *** * *
26714703 TTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAA--AA-TCAACTCATATTGCGAGAGGTG
1 TTTTCAATTTCTGTCTGTCAA------------AAAAATCAACTC-A-T-ATTGCGAGAG--GCG
*
26714765 AGTTGAGCCTCAGGACACGCTGAGGTA
49 AGTTGAGCCTCAGGACACGCCGAGGTA
* * * * *
26714792 ATTTCAATTTCTGT-TGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAG--GA
*
26714856 CACGTCGAGGTA
64 CACGCCGAGGTA
* *** * *** *** * *
26714868 TTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAA-AAAAAAATCAACTC-ATATTGCGAGA
1 TTTTC-A-----A--TTTC--TGTCTG--TCAAAAAAATCAACTCAT-ATTGCGAGA-GGCGA--
* *
26714931 GGTGAGTTGAGCCTCGGGACACGCTGAGGTA
50 -----GTTGAGCCTCAGGACACGCCGAGGTA
* * * *** * *
26714962 ATTTCAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACA
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACA
**
26715024 CGTTGAGGTA
66 CGCCGAGGTA
* * * * * *
26715034 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTC
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-AC
* *
26715096 ATGCGCTGAGCTA
65 A--CGCCGAGGTA
* * * *
26715109 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCA-GATC
1 TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGA-C
*
26715173 ACACACTGAGGTA
65 ACGC-C-GAGGTA
* * * * * * * *
26715186 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-
* *
26715251 TACATGTCGAGGTA
63 -ACACGCCGAGGTA
26715265 TTTTCAA
1 TTTTCAA
26715272 AATCTATTTT
Statistics
Matches: 481, Mismatches: 99, Indels: 127
0.68 0.14 0.18
Matches are distributed among these distances:
72 40 0.08
73 34 0.07
74 68 0.14
75 26 0.05
76 53 0.11
77 57 0.12
78 2 0.00
79 70 0.15
80 8 0.02
81 3 0.01
82 2 0.00
83 1 0.00
84 6 0.01
86 8 0.02
87 4 0.01
88 12 0.02
89 44 0.09
91 16 0.03
93 1 0.00
94 15 0.03
96 11 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (75 bp):
TTTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACA
CGCCGAGGTA
Found at i:26714718 original size:164 final size:164
Alignment explanation
Indices: 26714392--26715189 Score: 915
Period size: 165 Copynumber: 4.9 Consensus size: 164
26714382 GCTGAGGTAA
* * * * * *
26714392 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCATATTACTAGAGGTGAGTTGAGCATCGGGGCAC
1 TTTCAATTT-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* *** ** *
26714456 GCTGAGGTATTTTCAATTT-T-TATGT-TTTAATTTCAACTCGTATTGCGAGAGGCGAGTTGAGC
65 GCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGC
26714518 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
129 CTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
26714554 TTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
26714619 CTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCT
66 CTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCT
26714684 CAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
131 CAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
*
26714718 TTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTCAA-TTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
26714783 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCC
65 GCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCC
* * *
26714848 TCAGATCACACGTCGAGGTATTTTCAATTTCCATT
130 TCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* *
26714883 TTTCAATTTCTGCCTTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 TTTCAATTT-TGTCTTTC-----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* * * **
26714948 GACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTT
60 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTT
* * **
26715011 GAACCTCAAG--ACACGTTGAGGTATTTTCAA--------
125 GAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
* * * *
26715041 TTTC-----TGT-TTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCAT
1 TTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA-
* * * * *
26715098 GCGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
64 -CGCTGAGGTAATTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGA
* * * *
26715163 GCTTCAGATCACACACTGAGGTATTTT
127 GCCTCAGGTCACACGCCGAGGTATTTT
26715190 TTCAATTTAT
Statistics
Matches: 570, Mismatches: 47, Indels: 48
0.86 0.07 0.07
Matches are distributed among these distances:
144 2 0.00
145 38 0.07
147 21 0.04
148 4 0.01
150 34 0.06
151 4 0.01
152 17 0.03
158 4 0.01
161 3 0.01
162 72 0.13
163 4 0.01
164 77 0.14
165 165 0.29
166 19 0.03
168 34 0.06
170 72 0.13
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (164 bp):
TTTCAATTTTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
CTGAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCT
CAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
Found at i:26714840 original size:74 final size:76
Alignment explanation
Indices: 26714734--26714878 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
26714724 TTTTTGCCTT
*
26714734 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
26714796 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
26714808 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
26714873 AATTTC
66 AATTTC
26714879 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:26714993 original size:72 final size:73
Alignment explanation
Indices: 26714907--26715413 Score: 397
Period size: 72 Copynumber: 6.5 Consensus size: 73
26714897 TTTCAAAAAA
*
26714907 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
26714972 CTGTTTTC
66 CTGTTTTC
* ** * ** *
26714980 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
26715044 CTGTTTTC
66 CTGTTTTC
* * * ** *
26715052 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
26715117 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
26715128 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
26715193 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
26715207 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTC-
* *
26715271 AAATCTATTTTTCAAATTCTGTTTT
61 --A---A--TTTC----TGT-TTTC
* * * ** *
26715296 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAAT
26715361 TTCTGTTTTTTTTTC
64 TTCTG-----TTTTC
26715376 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
26715414 TTTTTAATTT
Statistics
Matches: 345, Mismatches: 53, Indels: 63
0.75 0.11 0.14
Matches are distributed among these distances:
72 64 0.19
73 34 0.10
75 21 0.06
76 5 0.01
77 48 0.14
78 3 0.01
79 64 0.19
80 9 0.03
81 6 0.02
82 30 0.09
83 1 0.00
85 4 0.01
86 2 0.01
88 49 0.14
89 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:26715230 original size:79 final size:76
Alignment explanation
Indices: 26714906--26715623 Score: 418
Period size: 88 Copynumber: 9.0 Consensus size: 76
26714896 CTTTCAAAAA
** *
26714906 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
26714969 TTTCTGTTTTC
66 TTTCTGTTTTC
* ** * * *
26714980 --AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
26715041 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
26715052 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
26715116 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
26715128 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
26715193 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
26715207 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
** *
26715271 AAATCTATTTTTC
65 ATTTCT-GTTTTC
* ** * **
26715284 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
26715349 GCTATTTTCAATTTCTGTTTTTTTTTC
55 GGTATTTTCAATTTCTG-----TTTTC
* * * * * *
26715376 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
26715440 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
26715463 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
26715524 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
26715538 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
26715603 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
26715624 TAATGTCTGT
Statistics
Matches: 504, Mismatches: 83, Indels: 101
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 32 0.06
75 36 0.07
76 5 0.01
77 65 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 7 0.01
82 30 0.06
83 1 0.00
84 31 0.06
85 7 0.01
86 1 0.00
87 11 0.02
88 119 0.24
89 3 0.01
90 1 0.00
91 13 0.03
92 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:26715431 original size:30 final size:30
Alignment explanation
Indices: 26715395--26715456 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
26715385 CAACTCATAT
26715395 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
26715425 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
26715455 TG
1 TG
26715457 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:26715557 original size:254 final size:248
Alignment explanation
Indices: 26715046--26715624 Score: 753
Period size: 254 Copynumber: 2.3 Consensus size: 248
26715036 TTCAATTTCT
* * *
26715046 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
26715111 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* *
26715172 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
26715237 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTATTTTTCAAATTCT
195 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
* *
26715291 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
26715355 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
26715420 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
* *
26715482 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
26715545 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
26715609 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
26715625 AATGTCTGTT
Statistics
Matches: 290, Mismatches: 29, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 145 0.50
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAA
Found at i:26716290 original size:17 final size:17
Alignment explanation
Indices: 26716270--26716306 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
26716260 AACCTAACCC
*
26716270 AAAAAAAAA-ACAAAGA
1 AAAAAAAAAGAAAAAGA
26716286 AAAAAAAAAGAAAAAGA
1 AAAAAAAAAGAAAAAGA
26716303 AAAA
1 AAAA
26716307 CTTACCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAGA
Found at i:26716305 original size:11 final size:11
Alignment explanation
Indices: 26716273--26716306 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
26716263 CTAACCCAAA
26716273 AAAAAAACAAAG
1 AAAAAAA-AAAG
26716285 AAAAAAAAAAG
1 AAAAAAAAAAG
26716296 AAAAAGAAAAA
1 AAAAA-AAAAA
26716307 CTTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:26722991 original size:62 final size:62
Alignment explanation
Indices: 26722922--26723043 Score: 235
Period size: 62 Copynumber: 2.0 Consensus size: 62
26722912 TTATTTATAG
26722922 ATTGGAGATGGGTTGGCAATGATATATCAATTATTAAATAATGGTAAAAGATGTATAGATAA
1 ATTGGAGATGGGTTGGCAATGATATATCAATTATTAAATAATGGTAAAAGATGTATAGATAA
*
26722984 ATTGGAGATGGGTTGGCAATGATGTATCAATTATTAAATAATGGTAAAAGATGTATAGAT
1 ATTGGAGATGGGTTGGCAATGATATATCAATTATTAAATAATGGTAAAAGATGTATAGAT
26723044 GATATCAAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.40, C:0.03, G:0.24, T:0.33
Consensus pattern (62 bp):
ATTGGAGATGGGTTGGCAATGATATATCAATTATTAAATAATGGTAAAAGATGTATAGATAA
Found at i:26723181 original size:6 final size:6
Alignment explanation
Indices: 26723172--26723202 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
26723162 TTAAAGTTAA
26723172 GTGCAT GTGCAT GTGCAT GTGCAT GTGCAT G
1 GTGCAT GTGCAT GTGCAT GTGCAT GTGCAT G
26723203 GAGGTCGGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.16, G:0.35, T:0.32
Consensus pattern (6 bp):
GTGCAT
Found at i:26731108 original size:3 final size:3
Alignment explanation
Indices: 26731100--26731135 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
26731090 AAACTAGAAA
26731100 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26731136 AAAATGAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26735406 original size:54 final size:54
Alignment explanation
Indices: 26735288--26735409 Score: 199
Period size: 54 Copynumber: 2.3 Consensus size: 54
26735278 TAAGATAACC
**
26735288 TCATCACATACCAAAACCAAGATTTGCTAGCCATAACAATAGCTGACCTTACAT
1 TCATCACATATTAAAACCAAGATTTGCTAGCCATAACAATAGCTGACCTTACAT
*
26735342 TCATCACATATTAAAACCAAGATTTGTTAGCCATAACAATAGCTGACCTTACAT
1 TCATCACATATTAAAACCAAGATTTGCTAGCCATAACAATAGCTGACCTTACAT
**
26735396 TCATTTCATATTAA
1 TCATCACATATTAA
26735410 CATTTACGTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.30
Consensus pattern (54 bp):
TCATCACATATTAAAACCAAGATTTGCTAGCCATAACAATAGCTGACCTTACAT
Found at i:26736537 original size:11 final size:11
Alignment explanation
Indices: 26736523--26736567 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
26736513 AGATAAATAT
26736523 TATTTTATTAA
1 TATTTTATTAA
*
26736534 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
26736547 TATTTTATTAT
1 TATTTTATTAA
26736558 TATTTTATTA
1 TATTTTATTA
26736568 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:26738458 original size:46 final size:46
Alignment explanation
Indices: 26738406--26738710 Score: 378
Period size: 46 Copynumber: 6.6 Consensus size: 46
26738396 GCTCTCTGAA
** *
26738406 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * **
26738452 ATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAATGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26738498 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * ***
26738544 GGGAAATGAATAAGACCATGGTTGAAAGATACTATGGTAGTGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26738590 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGACAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
26738636 ATGAAAAGAATAAGACCATGGTTGAAAGTTACCATGGCAACATTAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
26738682 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAATAAGACCATGGTTGAAAGA
26738711 CACTATGACA
Statistics
Matches: 222, Mismatches: 36, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 1 0.00
46 221 1.00
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:26738656 original size:138 final size:138
Alignment explanation
Indices: 26738416--26738717 Score: 433
Period size: 138 Copynumber: 2.2 Consensus size: 138
26738406 ATGAAATGTG
* * ** *
26738416 TAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACTATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * *
26738481 TACCATGGCAATGTGACATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGACGG
66 TACCATGACAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
26738546 GAAATGAA
131 AAAATGAA
* ***
26738554 TAAGACCATGGTTGAAAGATACTATGGTAGTGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACTATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* *
26738619 TACCATGACAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGTTACCATGGCAACATTACAG
66 TACCATGACAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
26738684 AAAATGAG
131 AAAATGAA
* *
26738692 TAAGACCATAGTTGAAAGACACTATG
1 TAAGACCATGGTTGAAAGATACTATG
26738718 ACATCATGTC
Statistics
Matches: 145, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
138 145 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACTATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGACAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
AAAATGAA
Found at i:26745212 original size:3 final size:3
Alignment explanation
Indices: 26745204--26745229 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26745194 ATATTTAAAA
26745204 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
26745230 AGGAAGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:26748820 original size:17 final size:18
Alignment explanation
Indices: 26748789--26748822 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26748779 ACCTTTTTTC
26748789 CTTTTAACTTCCCCAAAA
1 CTTTTAACTTCCCCAAAA
*
26748807 CTTTT-ACTTTCCCAAA
1 CTTTTAACTTCCCCAAA
26748823 TCCCTCAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (18 bp):
CTTTTAACTTCCCCAAAA
Found at i:26755775 original size:31 final size:31
Alignment explanation
Indices: 26755734--26755801 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
26755724 TACAAAATAG
*
26755734 TCACTTAATTATTTCAAAGTTTTCATTTAAA
1 TCACTGAATTATTTCAAAGTTTTCATTTAAA
* *
26755765 TCACTGAATTATTTGAAAGTTTTTATTTAAA
1 TCACTGAATTATTTCAAAGTTTTCATTTAAA
26755796 TCACTG
1 TCACTG
26755802 GGTTTTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (31 bp):
TCACTGAATTATTTCAAAGTTTTCATTTAAA
Found at i:26759464 original size:26 final size:26
Alignment explanation
Indices: 26759416--26759479 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
26759406 CAAATTGACT
*
26759416 TTCTATTAAAAA--CCCAACCATATC
1 TTCTTTTAAAAACTCCCAACCATATC
*
26759440 TTCTTTTAAAAACTCCCATCCATATC
1 TTCTTTTAAAAACTCCCAACCATATC
*
26759466 TTCTTTAAAAAACT
1 TTCTTTTAAAAACT
26759480 AGTCACTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
24 11 0.31
26 24 0.69
ACGTcount: A:0.38, C:0.27, G:0.00, T:0.36
Consensus pattern (26 bp):
TTCTTTTAAAAACTCCCAACCATATC
Found at i:26773664 original size:2 final size:2
Alignment explanation
Indices: 26773657--26773685 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26773647 AAAATTGTAA
26773657 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26773686 AACAACTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26778572 original size:51 final size:52
Alignment explanation
Indices: 26778509--26778608 Score: 134
Period size: 51 Copynumber: 1.9 Consensus size: 52
26778499 TTTTTATTTT
26778509 TTTTGGAGAAAACCAT-ATTCATTTCCAAATGATTT-C-ATTTCTCCATTTTCA
1 TTTTGGAGAAAACCATAATT-ATTTCCAAAT-ATTTCCTATTTCTCCATTTTCA
* * *
26778560 TTTTGGATAAAACCTTAATTATTTCCAAATATTTCCTATTTCTCTATTT
1 TTTTGGAGAAAACCATAATTATTTCCAAATATTTCCTATTTCTCCATTT
26778609 CACCATTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
50 4 0.09
51 25 0.58
52 14 0.33
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (52 bp):
TTTTGGAGAAAACCATAATTATTTCCAAATATTTCCTATTTCTCCATTTTCA
Found at i:26780406 original size:25 final size:24
Alignment explanation
Indices: 26780378--26780466 Score: 97
Period size: 25 Copynumber: 3.6 Consensus size: 24
26780368 ATTCGGGTAT
*
26780378 GCTCATACGAGCACATAAACGGAAA
1 GCTCATATGAGC-CATAAACGGAAA
* * *
26780403 GCTCTTTTGAGCCATATAACGGGAA
1 GCTCATATGAGCCATA-AACGGAAA
* *
26780428 GCTCATGTGAGCCATGTAACGGAAA
1 GCTCATATGAGCCAT-AAACGGAAA
26780453 GCTCATATGAGCCA
1 GCTCATATGAGCCA
26780467 ATATCGAGAA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
24 4 0.08
25 49 0.92
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (24 bp):
GCTCATATGAGCCATAAACGGAAA
Found at i:26789896 original size:120 final size:121
Alignment explanation
Indices: 26789593--26789926 Score: 467
Period size: 121 Copynumber: 2.8 Consensus size: 121
26789583 AATCTATGCT
* * * *
26789593 GAACAAGAAGCACAGGCAGAGAAGCAAACTCACATGAATAACATTTTAAAACCAAACTTATCTCG
1 GAACAAGAAGCACAGGCAGAGAAGCAAACTCACAAGCATAACATTTTAAAATCGAACTTATCTCG
*
26789658 AAAGCTAAAGATTGTTCAAACATGTAAGCAGCTCAATTCTAGAGTCAGCAAATACC
66 AAAGCTAAAGATTGTTCAAACATGTAAGCAGCTCAATTCTAGAGTAAGCAAATACC
* * *
26789714 GAACAAGAAGC-CTTGGCAGAGATGCAAACTCACACGCATAACATTTTAAAATCGAACTTATCTC
1 GAACAAGAAGCAC-AGGCAGAGAAGCAAACTCACAAGCATAACATTTTAAAATCGAACTTATCTC
* * *
26789778 AAAAGCTAAAGATTGTTCAAACATGTAATC-GCCTCAATTTTAGAGTAAGCAAA-ACC
65 GAAAGCTAAAGATTGTTCAAACATGTAAGCAG-CTCAATTCTAGAGTAAGCAAATACC
* * * *
26789834 GAACAAGAAGCACAGGCAGAGAAGCAAACTCACAAGCATAATATTTTAAGATGGAACTTATCTTG
1 GAACAAGAAGCACAGGCAGAGAAGCAAACTCACAAGCATAACATTTTAAAATCGAACTTATCTCG
* *
26789899 AAAGCCAAAAGATTATTCAAACATGTAA
66 AAAG-CTAAAGATTGTTCAAACATGTAA
26789927 CCACCTCGAT
Statistics
Matches: 189, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
120 64 0.34
121 125 0.66
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.21
Consensus pattern (121 bp):
GAACAAGAAGCACAGGCAGAGAAGCAAACTCACAAGCATAACATTTTAAAATCGAACTTATCTCG
AAAGCTAAAGATTGTTCAAACATGTAAGCAGCTCAATTCTAGAGTAAGCAAATACC
Found at i:26795277 original size:47 final size:47
Alignment explanation
Indices: 26795164--26795290 Score: 168
Period size: 47 Copynumber: 2.7 Consensus size: 47
26795154 TAAATTACCA
* *
26795164 ATGTCATGGCCCAGACATGGTCTTACACTAG-TTCACATGTTGAGGCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTAGCTTCAAATGTT--GGCCG
** *
26795212 ATACCATGTCCCAGACATGGACTTACACTAGCTCTCAAATGTT-GCCG
1 ATGTCATGTCCCAGACATGGTCTTACACTAGCT-TCAAATGTTGGCCG
26795259 ATGTCATGTCCCAGACATGGTCTTACACTAGC
1 ATGTCATGTCCCAGACATGGTCTTACACTAGC
26795291 ACACATATCA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
47 33 0.48
48 27 0.39
49 1 0.01
50 8 0.12
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGTCATGTCCCAGACATGGTCTTACACTAGCTTCAAATGTTGGCCG
Found at i:26795437 original size:48 final size:48
Alignment explanation
Indices: 26795168--26795441 Score: 298
Period size: 48 Copynumber: 5.7 Consensus size: 48
26795158 TTACCAATGT
* * **** * *
26795168 CATGGCCCAGACATGGTCTTACACTAGTTCACATGTTGAGGCCGATAC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
* * *** *
26795216 CATGTCCCAGACATGGACTTACACTAGCTCTCA-AATGTTGCCGATGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
* * * * *
26795263 CATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGTCAATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
* *
26795311 CATGTTCCAAACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
* * * **
26795359 AATGTCCTAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
*
26795407 CATGTCCCAGACATGGTCTTACACTGGCTCACATA
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATA
26795442 TCACCCAAAT
Statistics
Matches: 188, Mismatches: 37, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
47 38 0.20
48 150 0.80
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
Found at i:26800519 original size:19 final size:19
Alignment explanation
Indices: 26800495--26800533 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
26800485 TTGATTAGAG
*
26800495 TAAACATTTTTATTAAAAC
1 TAAACACTTTTATTAAAAC
26800514 TAAACACTTTTATTAAAAC
1 TAAACACTTTTATTAAAAC
26800533 T
1 T
26800534 TACTGCTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (19 bp):
TAAACACTTTTATTAAAAC
Found at i:26802561 original size:15 final size:16
Alignment explanation
Indices: 26802543--26802572 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26802533 CATGTTTTGT
26802543 ATAAATAT-TTTTTAC
1 ATAAATATATTTTTAC
26802558 ATAAATATATTTTTA
1 ATAAATATATTTTTA
26802573 TTGATTGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATAAATATATTTTTAC
Found at i:26804944 original size:50 final size:50
Alignment explanation
Indices: 26804869--26804966 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
26804859 CCATGGCAAC
26804869 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
26804919 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT
26804967 ACCTGATCAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:26805061 original size:31 final size:31
Alignment explanation
Indices: 26804966--26805061 Score: 138
Period size: 31 Copynumber: 3.1 Consensus size: 31
26804956 CAAGGACAAA
*
26804966 TACCTGATCAGTGAAAAGTGGTTGCTTCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTTCGGC
*
26804997 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTTCGGC
* * * *
26805028 TACCTGATCAGTGAATAGTAGTAGTTTCAGC
1 TACCTGATCAGTGAAAAGTGGTAGCTTCGGC
26805059 TAC
1 TAC
26805062 AAGTGACAAG
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 58 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
TACCTGATCAGTGAAAAGTGGTAGCTTCGGC
Found at i:26805149 original size:47 final size:47
Alignment explanation
Indices: 26805083--26805298 Score: 221
Period size: 47 Copynumber: 4.7 Consensus size: 47
26805073 GATTTCCGTA
* * *
26805083 TAAGACCATATCTGGGATATGGCATCAGTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGATATATGAATAC-GTG
* * * *
26805130 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTG-ATTCGTG
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGATATATGAATACGTG
* * * *
26805176 TAAGACCATAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATC-A-GTGTGATATATGAATACGTG
* *
26805225 TAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATATGTG
1 TAAGACCATAGCTGGGATATGGCATCAGTGTGATATATGAATACGTG
* *
26805267 TAAGACCATAGCTGGGCTATGGCATCATTGTG
1 TAAGACCATAGCTGGGATATGGCATCAGTGTG
26805299 TGAAGATGTG
Statistics
Matches: 146, Mismatches: 15, Indels: 16
0.82 0.08 0.09
Matches are distributed among these distances:
42 39 0.27
46 26 0.18
47 41 0.28
48 10 0.07
49 30 0.21
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (47 bp):
TAAGACCATAGCTGGGATATGGCATCAGTGTGATATATGAATACGTG
Found at i:26805268 original size:42 final size:43
Alignment explanation
Indices: 26805173--26805336 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 43
26805163 TATGTGATTC
* *
26805173 GTGTAAGACCATAGCTGGGTTATGGCATCGATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATCG--AT-T-ATATGAAGA-T
*
26805220 ACGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
26805264 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTGTGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
26805306 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
26805337 GAAAACGAAG
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.01
42 63 0.61
43 1 0.01
44 6 0.06
45 2 0.02
47 1 0.01
49 29 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:26814250 original size:39 final size:39
Alignment explanation
Indices: 26814207--26814282 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
26814197 TCGTGGTCTA
* * *
26814207 AAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAACGG
1 AAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAACGG
* *
26814246 AAGCCCGAAGGCTAACTGAAGCTCATCAGAGCTAAAC
1 AAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAAC
26814283 TGAAACCCCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.24, T:0.14
Consensus pattern (39 bp):
AAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAACGG
Found at i:26817450 original size:18 final size:18
Alignment explanation
Indices: 26817417--26817471 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
26817407 AATCGGTTAA
* *
26817417 TCAATAATATTCATTTAT
1 TCAATAACAGTCATTTAT
* *
26817435 TCAGTATCAGTCATTTAT
1 TCAATAACAGTCATTTAT
*
26817453 TCAATAACAGTCAATTAT
1 TCAATAACAGTCATTTAT
26817471 T
1 T
26817472 TCGTAGCAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (18 bp):
TCAATAACAGTCATTTAT
Found at i:26818808 original size:2 final size:2
Alignment explanation
Indices: 26818801--26818842 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
26818791 CCTTTTACTT
26818801 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26818843 ATAACTTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26819144 original size:9 final size:9
Alignment explanation
Indices: 26819132--26819156 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26819122 AATTTGTAAT
26819132 ATAATAACA
1 ATAATAACA
26819141 ATAATAACA
1 ATAATAACA
26819150 ATAATAA
1 ATAATAA
26819157 TATATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (9 bp):
ATAATAACA
Found at i:26822290 original size:10 final size:10
Alignment explanation
Indices: 26822275--26822330 Score: 69
Period size: 10 Copynumber: 5.6 Consensus size: 10
26822265 TAATTCTAGG
*
26822275 ATTTATTTTT
1 ATTTATATTT
26822285 ATTTATATTT
1 ATTTATATTT
26822295 ATTTATATTT
1 ATTTATATTT
*
26822305 AATTATATTT
1 ATTTATATTT
*
26822315 AATTAT-TTGT
1 ATTTATATT-T
26822325 ATTTAT
1 ATTTAT
26822331 CTTTTAGAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
9 2 0.05
10 40 0.95
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATATTT
Found at i:26822300 original size:20 final size:20
Alignment explanation
Indices: 26822275--26822330 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
26822265 TAATTCTAGG
26822275 ATTTATTTTTATTTATATTT
1 ATTTATTTTTATTTATATTT
* *
26822295 ATTTATATTTAATTATATTT
1 ATTTATTTTTATTTATATTT
* *
26822315 AATTATTTGTATTTAT
1 ATTTATTTTTATTTAT
26822331 CTTTTAGAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
ATTTATTTTTATTTATATTT
Found at i:26826068 original size:5 final size:5
Alignment explanation
Indices: 26826048--26826139 Score: 97
Period size: 5 Copynumber: 19.0 Consensus size: 5
26826038 AGGCAACCTA
26826048 ATTTT -TTTT A-TTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT
* *
26826095 ATTTT ACTTT ATTTT -TCTATT -TATT ATTTT A-TTT ATTATT ATTTT
1 ATTTT ATTTT ATTTT AT-T-TT ATTTT ATTTT ATTTT ATT-TT ATTTT
26826140 TTGGATGCTG
Statistics
Matches: 75, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
4 19 0.25
5 48 0.64
6 8 0.11
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:26826984 original size:13 final size:13
Alignment explanation
Indices: 26826966--26826998 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26826956 CCTAAGTAAA
*
26826966 AATAAATAAAGAG
1 AATAAAAAAAGAG
26826979 AATAAAAAAAGAG
1 AATAAAAAAAGAG
26826992 AA-AAAAA
1 AATAAAAA
26826999 GAACAAGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (13 bp):
AATAAAAAAAGAG
Found at i:26827000 original size:23 final size:22
Alignment explanation
Indices: 26826963--26827023 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
26826953 ATTCCTAAGT
* * * *
26826963 AAAAATAAATAAAGAGAATAAA
1 AAAAAGAAAAAAAGACAAGAAA
*
26826985 AAAAGAGAAAAAAAGAACAAGGAA
1 AAAA-AGAAAAAAAG-ACAAGAAA
26827009 AAAAAGAAAAAAAGA
1 AAAAAGAAAAAAAGA
26827024 AGAAGGAGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 5 0.16
23 18 0.56
24 9 0.28
ACGTcount: A:0.79, C:0.02, G:0.15, T:0.05
Consensus pattern (22 bp):
AAAAAGAAAAAAAGACAAGAAA
Found at i:26827001 original size:8 final size:8
Alignment explanation
Indices: 26826983--26827024 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
26826973 AAAGAGAATA
26826983 AAAAAAGAG
1 AAAAAA-AG
26826992 AAAAAAAG
1 AAAAAAAG
* *
26827000 -AACAAGG
1 AAAAAAAG
26827007 AAAAAAAG
1 AAAAAAAG
26827015 AAAAAAAG
1 AAAAAAAG
26827023 AA
1 AA
26827025 GAAGGAGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
7 5 0.18
8 17 0.61
9 6 0.21
ACGTcount: A:0.81, C:0.02, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:26827024 original size:23 final size:24
Alignment explanation
Indices: 26826983--26827030 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
26826973 AAAGAGAATA
26826983 AAAAAAGAGAAAAAAAGAACAAGG
1 AAAAAAGAGAAAAAAAGAACAAGG
*
26827007 AAAAAA-AGAAAAAAAGAAGAAGG
1 AAAAAAGAGAAAAAAAGAACAAGG
26827030 A
1 A
26827031 GGTATTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.77, C:0.02, G:0.21, T:0.00
Consensus pattern (24 bp):
AAAAAAGAGAAAAAAAGAACAAGG
Found at i:26827691 original size:10 final size:10
Alignment explanation
Indices: 26827646--26827705 Score: 70
Period size: 10 Copynumber: 6.0 Consensus size: 10
26827636 TAATTCTAGG
26827646 ATTTAT-TTT
1 ATTTATCTTT
26827655 CATTTATCTTT
1 -ATTTATCTTT
*
26827666 ATTCATCTTT
1 ATTTATCTTT
*
26827676 AATTATCTTT
1 ATTTATCTTT
26827686 ATTTAT-TTGT
1 ATTTATCTT-T
26827696 ATTTATCTTT
1 ATTTATCTTT
26827706 TATAATTTCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 2 0.05
10 36 0.84
11 5 0.12
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:26828660 original size:26 final size:26
Alignment explanation
Indices: 26828612--26828666 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
26828602 TACTGTTATT
** *
26828612 TTTACTATTTTATAGGGTTTAGGGTA
1 TTTACTATTTTATAGGGAATAGGATA
26828638 TTTACTATTTTATAGGGAATAGGATA
1 TTTACTATTTTATAGGGAATAGGATA
26828664 TTT
1 TTT
26828667 TTGGTGCTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.04, G:0.20, T:0.49
Consensus pattern (26 bp):
TTTACTATTTTATAGGGAATAGGATA
Found at i:26832155 original size:3 final size:3
Alignment explanation
Indices: 26832142--26832181 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
26832132 TTTTGTTTAT
26832142 TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26832182 TAAAAAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:26834134 original size:46 final size:44
Alignment explanation
Indices: 26834030--26834137 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
26834020 TGTCTTTGAC
** * * *
26834030 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
26834074 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
26834120 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
26834138 TTTCATTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:26835504 original size:21 final size:21
Alignment explanation
Indices: 26835480--26835538 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 21
26835470 AAGTCTAGTT
*
26835480 GAAGCACATAAGTGCTAAACA
1 GAAGCACACAAGTGCTAAACA
*
26835501 GAAGC-C-CGAAG-GC-AAACT
1 GAAGCACAC-AAGTGCTAAACA
26835519 GAAGCACACAAGTGCTAAAC
1 GAAGCACACAAGTGCTAAAC
26835539 GGAATCCCGA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
18 9 0.29
19 6 0.19
20 7 0.23
21 9 0.29
ACGTcount: A:0.44, C:0.24, G:0.22, T:0.10
Consensus pattern (21 bp):
GAAGCACACAAGTGCTAAACA
Found at i:26835522 original size:18 final size:18
Alignment explanation
Indices: 26835496--26835562 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
26835486 CATAAGTGCT
*
26835496 AAACAGAAGCCCGAAGGC
1 AAACTGAAGCCCGAAGGC
26835514 AAACTGAAGCACAC-AAGTGC
1 AAACTGAAGC-C-CGAAG-GC
* *
26835534 TAAACGGAATCCCGAAGGC
1 -AAACTGAAGCCCGAAGGC
*
26835553 TAACTGAAGC
1 AAACTGAAGC
26835563 TCATCAGAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 16 0.42
19 7 0.18
20 7 0.18
21 8 0.21
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.09
Consensus pattern (18 bp):
AAACTGAAGCCCGAAGGC
Found at i:26835522 original size:39 final size:39
Alignment explanation
Indices: 26835479--26835562 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 39
26835469 GAAGTCTAGT
*
26835479 TGAAGCACATAAGTGCTAAACAGAAGCCCGAAGGCAAAC
1 TGAAGCACACAAGTGCTAAACAGAAGCCCGAAGGCAAAC
* * *
26835518 TGAAGCACACAAGTGCTAAACGGAATCCCGAAGGCTAAC
1 TGAAGCACACAAGTGCTAAACAGAAGCCCGAAGGCAAAC
26835557 TGAAGC
1 TGAAGC
26835563 TCATCAGAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.40, C:0.24, G:0.24, T:0.12
Consensus pattern (39 bp):
TGAAGCACACAAGTGCTAAACAGAAGCCCGAAGGCAAAC
Found at i:26839043 original size:17 final size:17
Alignment explanation
Indices: 26839021--26839055 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
26839011 TAAGTTAGGG
*
26839021 TACGATTTCTCGAATTT
1 TACGATTTCTCAAATTT
26839038 TACGATTTCTCAAATTT
1 TACGATTTCTCAAATTT
26839055 T
1 T
26839056 CTAAATCCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.17, G:0.09, T:0.49
Consensus pattern (17 bp):
TACGATTTCTCAAATTT
Found at i:26839595 original size:3 final size:3
Alignment explanation
Indices: 26839579--26839642 Score: 60
Period size: 3 Copynumber: 22.0 Consensus size: 3
26839569 TTGTTTTTTT
* * * * *
26839579 TAA TGA TAA AAA TAA TAA TTA TAA TAA TAA TAA TAG TAA TAA T-A TCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
26839626 TAA AAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA
26839643 ATAAGTAAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
2 4 0.08
3 44 0.92
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:26839766 original size:21 final size:21
Alignment explanation
Indices: 26839742--26839782 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26839732 TAAAATTTAA
*
26839742 ATATAAAAAGATAAATAATAG
1 ATATAAAAAGAAAAATAATAG
*
26839763 ATATAAAAATAAAAATAATA
1 ATATAAAAAGAAAAATAATA
26839783 TTAACTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (21 bp):
ATATAAAAAGAAAAATAATAG
Found at i:26839794 original size:18 final size:18
Alignment explanation
Indices: 26839773--26839834 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
26839763 ATATAAAAAT
*
26839773 AAAAATAATATTAACT-TA
1 AAAAATAATAATAA-TATA
* *
26839791 AAAAAGAAGAATAATATA
1 AAAAATAATAATAATATA
26839809 AAAAATAATAAATAA-ATA
1 AAAAATAAT-AATAATATA
26839827 ATAAAATA
1 A-AAAATA
26839835 CATTAATCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 24 0.67
19 11 0.31
ACGTcount: A:0.71, C:0.02, G:0.03, T:0.24
Consensus pattern (18 bp):
AAAAATAATAATAATATA
Found at i:26839832 original size:21 final size:19
Alignment explanation
Indices: 26839754--26839832 Score: 52
Period size: 24 Copynumber: 3.7 Consensus size: 19
26839744 ATAAAAAGAT
26839754 AAATAATAGATATAAAAATAA
1 AAATAATA-ATA-AAAAATAA
*
26839775 AAATAATATTAACTTAAAAAAGAA
1 AAAT-A-A-TAA--TAAAAAATAA
*
26839799 GAATAAT-ATAAAAAATAA
1 AAATAATAATAAAAAATAA
26839817 TAAATAAATAATAAAA
1 -AAAT-AATAATAAAA
26839833 TACATTAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
18 9 0.20
19 3 0.07
20 4 0.09
21 11 0.24
22 2 0.04
23 3 0.07
24 12 0.26
25 2 0.04
ACGTcount: A:0.71, C:0.01, G:0.04, T:0.24
Consensus pattern (19 bp):
AAATAATAATAAAAAATAA
Found at i:26840128 original size:4 final size:4
Alignment explanation
Indices: 26840119--26840161 Score: 59
Period size: 4 Copynumber: 10.5 Consensus size: 4
26840109 AAGAATTAAT
* *
26840119 AATA AATA AATA AATA AACAA AATA AATA AATA AATA AGTA AA
1 AATA AATA AATA AATA AA-TA AATA AATA AATA AATA AATA AA
26840162 ACGAAGTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 31 0.91
5 3 0.09
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:26840653 original size:18 final size:18
Alignment explanation
Indices: 26840632--26840675 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
26840622 TAAAAGCCAA
26840632 ATTTTCCTTAAAAATTTC
1 ATTTTCCTTAAAAATTTC
26840650 ATTTTCCTTAAAAATTTC
1 ATTTTCCTTAAAAATTTC
26840668 ATTTTCCT
1 ATTTTCCT
26840676 GCTTTCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTTCCTTAAAAATTTC
Found at i:26842237 original size:44 final size:44
Alignment explanation
Indices: 26842072--26842242 Score: 146
Period size: 44 Copynumber: 3.9 Consensus size: 44
26842062 TGTTTACTGT
* * ****
26842072 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-ACAA
** ** *
26842116 CTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGATTCGCCAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TCTACAA
* * * **
26842161 CTTCGATCTACTCTACTGCAACTTCAATGAGATAAGATCTACAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACAA
* * *
26842205 CTTCAATTTGCTCCACTGCTACTTCAGGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
26842243 TTGTGGATTC
Statistics
Matches: 99, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 67 0.68
45 31 0.31
46 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTACAA
Found at i:26845260 original size:7 final size:6
Alignment explanation
Indices: 26845232--26845302 Score: 53
Period size: 6 Copynumber: 12.2 Consensus size: 6
26845222 ATTGGCGGCC
* *
26845232 TCTTTT TC-TCT TCTTTT TCTTTGT TC-TTT TC-TTT TCTTTTT TGTTTT
1 TCTTTT TCTTTT TCTTTT TCTTT-T TCTTTT TCTTTT TC-TTTT TCTTTT
*
26845279 TCTTTT GT-TTTT TGTTTT T-TTTT T
1 TCTTTT -TCTTTT TCTTTT TCTTTT T
26845303 TAGGAAGTGA
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
5 18 0.33
6 29 0.53
7 8 0.15
ACGTcount: A:0.00, C:0.13, G:0.06, T:0.82
Consensus pattern (6 bp):
TCTTTT
Found at i:26845263 original size:18 final size:17
Alignment explanation
Indices: 26845232--26845272 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
26845222 ATTGGCGGCC
*
26845232 TCTTTTTCTCTTCTTTT
1 TCTTTTTCTTTTCTTTT
26845249 TCTTTGTTCTTTTC-TTT
1 TCTTT-TTCTTTTCTTTT
26845266 TCTTTTT
1 TCTTTTT
26845273 TGTTTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 13 0.59
18 7 0.32
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (17 bp):
TCTTTTTCTTTTCTTTT
Found at i:26845273 original size:12 final size:11
Alignment explanation
Indices: 26845232--26845302 Score: 54
Period size: 11 Copynumber: 6.1 Consensus size: 11
26845222 ATTGGCGGCC
* *
26845232 TCTTTTTCTCT
1 TCTTTTTTTTT
26845243 TCTTTTTCTTTGT
1 TCTTTTT-TTT-T
26845256 TCTTTTCTTTTCT
1 TCTTTT-TTTT-T
*
26845269 T-TTTTGTTTT
1 TCTTTTTTTTT
26845279 TCTTTTGTTTTT
1 TCTTTT-TTTTT
*
26845291 TGTTTTTTTTT
1 TCTTTTTTTTT
26845302 T
1 T
26845303 TAGGAAGTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
10 2 0.04
11 20 0.41
12 14 0.29
13 12 0.24
14 1 0.02
ACGTcount: A:0.00, C:0.13, G:0.06, T:0.82
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:26845279 original size:18 final size:18
Alignment explanation
Indices: 26845258--26845301 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
26845248 TTCTTTGTTC
26845258 TTTTCTTTTCTTTTTTGT
1 TTTTCTTTTCTTTTTTGT
*
26845276 TTTTCTTTTGTTTTTTGT
1 TTTTCTTTTCTTTTTTGT
26845294 TTTT-TTTT
1 TTTTCTTTT
26845302 TTAGGAAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.86
Consensus pattern (18 bp):
TTTTCTTTTCTTTTTTGT
Found at i:26845281 original size:23 final size:22
Alignment explanation
Indices: 26845235--26845302 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 22
26845225 GGCGGCCTCT
* *
26845235 TTTTCTCTTCTTTTTCTTTGTTC
1 TTTTCTTTTCTTTTT-TTTTTTC
26845258 TTTTCTTTTCTTTTTTGTTTTTC
1 TTTTCTTTTCTTTTTT-TTTTTC
* *
26845281 TTTTGTTTTTTGTTTTTTTTTT
1 TTTTCTTTTCT-TTTTTTTTTT
26845303 TAGGAAGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.03
23 33 0.85
24 5 0.13
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (22 bp):
TTTTCTTTTCTTTTTTTTTTTC
Done.