Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr14
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244914714
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 4503000 characters in sequence are not A, C, G, or T
File 92 of 770
Found at i:26845281 original size:30 final size:30
Alignment explanation
Indices: 26845245--26845303 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26845235 TTTTCTCTTC
26845245 TTTTTC-TTTGTTCTTTTCTTTTCTTTTTTG
1 TTTTTCTTTTGTT-TTTTCTTTTCTTTTTTG
* *
26845275 TTTTTCTTTTGTTTTTTGTTTTTTTTTTT
1 TTTTTCTTTTGTTTTTTCTTTTCTTTTTT
26845304 AGGAAGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 20 0.77
31 6 0.23
ACGTcount: A:0.00, C:0.08, G:0.07, T:0.85
Consensus pattern (30 bp):
TTTTTCTTTTGTTTTTTCTTTTCTTTTTTG
Found at i:26845302 original size:18 final size:18
Alignment explanation
Indices: 26845251--26845302 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
26845241 CTTCTTTTTC
26845251 TTTGTTCTTTTCTTTTCTTT
1 TTTGTT-TTTT-TTTTCTTT
* *
26845271 TTTGTTTTTCTTTTGTTT
1 TTTGTTTTTTTTTTCTTT
26845289 TTTGTTTTTTTTTT
1 TTTGTTTTTTTTTT
26845303 TAGGAAGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 20 0.69
19 3 0.10
20 6 0.21
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.85
Consensus pattern (18 bp):
TTTGTTTTTTTTTTCTTT
Found at i:26845303 original size:12 final size:12
Alignment explanation
Indices: 26845234--26845303 Score: 59
Period size: 13 Copynumber: 5.6 Consensus size: 12
26845224 TGGCGGCCTC
*
26845234 TTTTTCTCTTCTT
1 TTTTTTTCTT-TT
* *
26845247 TTTCTTTGTTCTT
1 TTTTTTTCTT-TT
*
26845260 TTCTTTTCTTTT
1 TTTTTTTCTTTT
26845272 TTGTTTTTCTTTT
1 TT-TTTTTCTTTT
* *
26845285 GTTTTTTGTTTT
1 TTTTTTTCTTTT
26845297 TTTTTTT
1 TTTTTTT
26845304 AGGAAGTGAA
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
12 19 0.41
13 27 0.59
ACGTcount: A:0.00, C:0.11, G:0.06, T:0.83
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:26850720 original size:3 final size:3
Alignment explanation
Indices: 26850714--26850774 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
26850704 TTTTTAAATG
26850714 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26850762 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
26850775 ATAAGTAAAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26850785 original size:8 final size:7
Alignment explanation
Indices: 26850714--26850786 Score: 74
Period size: 6 Copynumber: 11.6 Consensus size: 7
26850704 TTTTTAAATG
26850714 ATAAT-A
1 ATAATAA
26850720 ATAAT-A
1 ATAATAA
26850726 ATAAT-A
1 ATAATAA
26850732 ATAAT-A
1 ATAATAA
26850738 ATAAT-A
1 ATAATAA
26850744 ATAAT-A
1 ATAATAA
26850750 ATAAT-A
1 ATAATAA
26850756 ATAAT-A
1 ATAATAA
26850762 ATAAT-A
1 ATAATAA
26850768 ATAATAA
1 ATAATAA
26850775 ATAAGTAA
1 ATAA-TAA
26850783 ATAA
1 ATAA
26850787 AACACATATA
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
6 53 0.82
7 5 0.08
8 7 0.11
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (7 bp):
ATAATAA
Found at i:26850911 original size:21 final size:20
Alignment explanation
Indices: 26850874--26850916 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
26850864 TAAAATTTAG
*
26850874 ATATAAAAAAGATAAATAAT
1 ATATAAAAAAGAAAAATAAT
*
26850894 ATATATAAAAATAAAAATAAT
1 ATATA-AAAAAGAAAAATAAT
26850915 AT
1 AT
26850917 TAACTTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (20 bp):
ATATAAAAAAGAAAAATAAT
Found at i:26851251 original size:4 final size:4
Alignment explanation
Indices: 26851242--26851288 Score: 58
Period size: 4 Copynumber: 11.5 Consensus size: 4
26851232 AAGAATTAAT
* * *
26851242 AATA AATA AATA ATTA AACAA AATA AATA AATA AATA AATA AGTA AA
1 AATA AATA AATA AATA AA-TA AATA AATA AATA AATA AATA AATA AA
26851289 ACGAAGTAGA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
4 33 0.92
5 3 0.08
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:26855255 original size:30 final size:30
Alignment explanation
Indices: 26855219--26855275 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
26855209 GACCCCTTAA
26855219 TTAGAGGTATGAAAATAAATCTATTTCTAT
1 TTAGAGGTATGAAAATAAATCTATTTCTAT
26855249 TTAGAGGTATGAAAATAAATCTATTTC
1 TTAGAGGTATGAAAATAAATCTATTTC
26855276 ACCACCTACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.39
Consensus pattern (30 bp):
TTAGAGGTATGAAAATAAATCTATTTCTAT
Found at i:26857417 original size:16 final size:16
Alignment explanation
Indices: 26857398--26857437 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
26857388 ATCCTTTTTG
*
26857398 AAATTAATAAAATTAT
1 AAATTAATAAAATAAT
*
26857414 AAATTAATATAATAAT
1 AAATTAATAAAATAAT
26857430 ATAATTAA
1 A-AATTAA
26857438 AATGTAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATTAATAAAATAAT
Found at i:26862661 original size:15 final size:15
Alignment explanation
Indices: 26862641--26862709 Score: 61
Period size: 14 Copynumber: 4.5 Consensus size: 15
26862631 ATATTACAAA
26862641 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
26862656 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
26862673 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
26862690 AT-TTTAATATTAA-
1 ATATTTATTATTAAT
26862703 ATATTTA
1 ATATTTA
26862710 AAATTTTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
13 2 0.04
14 14 0.31
15 11 0.24
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:26862679 original size:34 final size:28
Alignment explanation
Indices: 26862639--26862709 Score: 88
Period size: 34 Copynumber: 2.3 Consensus size: 28
26862629 TTATATTACA
26862639 AAATATTTATTATTAATATATTTATAATTATAAT
1 AAATATTTATTATTAA-A-ATTT-TAA-TAT--T
26862673 AAATATTTATTATTAAAATTTTAATATT
1 AAATATTTATTATTAAAATTTTAATATT
26862701 AAATATTTA
1 AAATATTTA
26862710 AAATTTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
28 10 0.27
30 3 0.08
31 3 0.08
32 4 0.11
33 1 0.03
34 16 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
AAATATTTATTATTAAAATTTTAATATT
Found at i:26862698 original size:21 final size:22
Alignment explanation
Indices: 26862685--26862730 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
26862675 ATATTTATTA
26862685 TTAAAATTTTAATATTAAATAT
1 TTAAAATTTTAATATTAAATAT
* *
26862707 TTAAAATTTTATTTTTAAA-AT
1 TTAAAATTTTAATATTAAATAT
26862728 TTA
1 TTA
26862731 TTGCTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAAAATTTTAATATTAAATAT
Found at i:26862775 original size:16 final size:19
Alignment explanation
Indices: 26862744--26862805 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 19
26862734 CTAAAATATA
*
26862744 ATTAAAATATTAAATAATTT
1 ATTAATATATT-AATAATTT
26862764 ATTAA-A-A-TAATAAATTAT
1 ATTAATATATTAAT-AATT-T
26862782 ATTAATTATATTAATAATTT
1 ATTAA-TATATTAATAATTT
26862802 ATTA
1 ATTA
26862806 TATGACTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
16 3 0.08
17 5 0.14
18 7 0.19
19 1 0.03
20 11 0.31
21 5 0.14
22 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAATATATTAATAATTT
Found at i:26862826 original size:38 final size:39
Alignment explanation
Indices: 26862737--26862827 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 39
26862727 TTTATTGCTA
*
26862737 AAATATAATTAA-AATATTAAATAATTTATTAAAATAAT
1 AAATATAATTAATTATATTAAATAATTTATTAAAATAAT
* *
26862775 AAAT-TATATTAATTATATT-AATAATTTATT-ATATGACT
1 AAATATA-ATTAATTATATTAAATAATTTATTAAAAT-AAT
*
26862813 AAATATAAATAATTA
1 AAATATAATTAATTA
26862828 AATATGTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
37 5 0.11
38 33 0.73
39 7 0.16
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (39 bp):
AAATATAATTAATTATATTAAATAATTTATTAAAATAAT
Found at i:26864583 original size:19 final size:20
Alignment explanation
Indices: 26864559--26864602 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
26864549 AAAATTATAA
26864559 TTTAATT-TAAAACAAAAAT
1 TTTAATTATAAAACAAAAAT
*
26864578 TTTAATTATAAAATAAAAAT
1 TTTAATTATAAAACAAAAAT
26864598 TTTAA
1 TTTAA
26864603 AAATATTAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTAATTATAAAACAAAAAT
Found at i:26866659 original size:32 final size:32
Alignment explanation
Indices: 26866618--26866682 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
26866608 AATTGTTTCT
26866618 TCCTTTACCGCATTCTCAGTGTTCGTAGTAGG
1 TCCTTTACCGCATTCTCAGTGTTCGTAGTAGG
26866650 TCCTTTACCGCATTCTCAGTGTTCGTAGTAGG
1 TCCTTTACCGCATTCTCAGTGTTCGTAGTAGG
26866682 T
1 T
26866683 TTTGCTTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (32 bp):
TCCTTTACCGCATTCTCAGTGTTCGTAGTAGG
Found at i:26871129 original size:3 final size:3
Alignment explanation
Indices: 26871121--26871181 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
26871111 CTTTACACAT
26871121 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26871169 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
26871182 GACCTCTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26872335 original size:19 final size:19
Alignment explanation
Indices: 26872301--26872350 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
26872291 TAAAATATGC
* *
26872301 ATTATTAAAATTAAATTAAA
1 ATTA-TAAAATAAAAATAAA
*
26872321 A-TATTAAATAAAAATAAA
1 ATTATAAAATAAAAATAAA
26872339 ATTATAAAATAA
1 ATTATAAAATAA
26872351 TATATTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 13 0.52
19 11 0.44
20 1 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATTATAAAATAAAAATAAA
Found at i:26872446 original size:206 final size:209
Alignment explanation
Indices: 26872089--26872538 Score: 681
Period size: 206 Copynumber: 2.1 Consensus size: 209
26872079 TGCATACTTG
* *
26872089 TATGCATTATTAGAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATGTTATT
1 TATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATATTATT
* * * *
26872154 TGGAAAATAACTATTATTGTAATGAGATACATGTTTTATTAGGTATAAGTATTTAAAATTTTGTT
66 TGGAAAATAACAATTATTATAATGAGATACATGTTTTATTAGGTATAAATATTTAAAATTTTATT
* * * * *
26872219 TTTGTAATGTGATACATGCGTG-TGTATATATATAATCATATTAGTG-ATCTGCTAATGCGTACT
131 TTTATAATGTGATACATGCGTGATATATATATATAATCATATTACTGAATCTGCTAATACATACT
26872282 TCATCCGGATAAAA
196 TCATCCGGATAAAA
*
26872296 TATGCATTATTAAAATTAAATTAAAATATTAAATAA-AAATAAAATTATAAAATAATATATTATT
1 TATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATATTATT
* *
26872360 TGGGAAATAACAATTATTATAATGAGATGCATGTTTTATTAGGTATAAATATTTAAAATTTTATT
66 TGGAAAATAACAATTATTATAATGAGATACATGTTTTATTAGGTATAAATATTTAAAATTTTATT
*
26872425 TTTATAATGTGATATATGCGTGTATATATATATATATATAATCATATTACTGAATCTGCTAATAC
131 TTTATAATGTGATACATGCGTG-----ATATATATATATAATCATATTACTGAATCTGCTAATAC
*
26872490 ATACTTCATCCGGATAAAG
191 ATACTTCATCCGGATAAAA
*
26872509 TATGCATTGTTAAAATTAAATTAAAATATT
1 TATGCATTATTAAAATTAAATTAAAATATT
26872539 TTTTAAAAAC
Statistics
Matches: 219, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
206 105 0.48
207 35 0.16
212 22 0.10
213 57 0.26
ACGTcount: A:0.42, C:0.06, G:0.11, T:0.40
Consensus pattern (209 bp):
TATGCATTATTAAAATTAAATTAAAATATTAAATAAGAAATAAAATTATAAAACAATATATTATT
TGGAAAATAACAATTATTATAATGAGATACATGTTTTATTAGGTATAAATATTTAAAATTTTATT
TTTATAATGTGATACATGCGTGATATATATATATAATCATATTACTGAATCTGCTAATACATACT
TCATCCGGATAAAA
Found at i:26875340 original size:14 final size:15
Alignment explanation
Indices: 26875315--26875347 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
26875305 AACTTAAAAA
*
26875315 TGTTTCTTTTGTGTT
1 TGTTTCTTTTGTCTT
26875330 TGTTT-TTTTGTCTT
1 TGTTTCTTTTGTCTT
26875344 TGTT
1 TGTT
26875348 GTTCTCATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.00, C:0.06, G:0.18, T:0.76
Consensus pattern (15 bp):
TGTTTCTTTTGTCTT
Found at i:26884493 original size:2 final size:2
Alignment explanation
Indices: 26884486--26884522 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
26884476 TGAATGCATT
26884486 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26884523 GTTTCCTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26885578 original size:41 final size:41
Alignment explanation
Indices: 26885532--26885615 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
26885522 CGTTAGTAAT
26885532 TAGGACGAAATAGGAATAATAACGATAGTAGAGAACTTAAA
1 TAGGACGAAATAGGAATAATAACGATAGTAGAGAACTTAAA
26885573 TAGGACGAAATAGGAATAATAACGATAGTAGAGAACTTAAA
1 TAGGACGAAATAGGAATAATAACGATAGTAGAGAACTTAAA
26885614 TA
1 TA
26885616 AATAAATTAG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.51, C:0.07, G:0.21, T:0.20
Consensus pattern (41 bp):
TAGGACGAAATAGGAATAATAACGATAGTAGAGAACTTAAA
Found at i:26892338 original size:46 final size:46
Alignment explanation
Indices: 26892274--26892423 Score: 158
Period size: 46 Copynumber: 3.1 Consensus size: 46
26892264 ACACACTGTA
*
26892274 GCCATAGCCCAGCCATGGTCTTACACGAATCACATATCACATTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATTGAT
* * * * *
26892320 GCCATATCCCAGATATGGTCTTATACGGAAGCACGTAATCACATATCTCTGAT
1 GCCATAGCCCAGCTATGGTCTTACAC-GAATCACAT-ATCAC--A--T-TGAT
*
26892373 GCCATAGCCCAGCTATGGTCTTACAC-AGATCACATATCATATTGAT
1 GCCATAGCCCAGCTATGGTCTTACACGA-ATCACATATCACATTGAT
26892419 GCCAT
1 GCCAT
26892424 GGTCCAACCA
Statistics
Matches: 84, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
46 31 0.37
47 8 0.10
48 5 0.06
49 1 0.01
50 1 0.01
51 5 0.06
52 6 0.07
53 27 0.32
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
GCCATAGCCCAGCTATGGTCTTACACGAATCACATATCACATTGAT
Found at i:26893544 original size:21 final size:21
Alignment explanation
Indices: 26893507--26893590 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
26893497 TGATCAGTAT
*
26893507 ACGACACATAA-GTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
* *
26893527 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAGGTGCCTGAA
*
26893548 ACGACACACAAGGTGCCTAAAA
1 ACGACACACAAGGTGCCT-GAA
* *
26893570 TACGACACATAAAGTGCCTGA
1 -ACGACACACAAGGTGCCTGA
26893591 TCAGTATAGC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
20 9 0.17
21 25 0.48
22 2 0.04
23 16 0.31
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.14
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:26893587 original size:44 final size:41
Alignment explanation
Indices: 26893505--26893591 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
26893495 CCTGATCAGT
* * * *
26893505 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACACAAGTGCCTAAAACGACACACAAAGTGCCTG
*
26893546 ATACGACACACAAGGTGCCTAAAATACGACACATAAAGTGCCTG
1 ATACGACACACAA-GTGCCT-AAA-ACGACACACAAAGTGCCTG
26893590 AT
1 AT
26893592 CAGTATAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 12 0.32
42 6 0.16
43 2 0.05
44 18 0.47
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.16
Consensus pattern (41 bp):
ATACGACACACAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:26893877 original size:29 final size:28
Alignment explanation
Indices: 26893795--26893878 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
26893785 AACACACCAG
* *
26893795 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
* *
26893823 TATAATCCTCCCAAACAAACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
26893851 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
26893879 GCACAAAGTG
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.48, C:0.30, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:26897201 original size:16 final size:17
Alignment explanation
Indices: 26897167--26897217 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
26897157 AATATTTTTA
*
26897167 TATTATTAATAAATTTT
1 TATTATTAATAAATATT
*
26897184 TATTTTTAA-AAATATT
1 TATTATTAATAAATATT
**
26897200 TAAAATTAATAAAATATT
1 TATTATTAAT-AAATATT
26897218 ATAATTTTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
16 12 0.44
17 8 0.30
18 7 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTATTAATAAATATT
Found at i:26923200 original size:53 final size:53
Alignment explanation
Indices: 26923026--26923231 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
26923016 ATTAGGGTTT
* * * * * * *
26923026 AAGGATACCAAGTAAGACAATGCCAAGGCATGACATTGTTAAGTTTCACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * *
26923080 AAGGAAACCATGTAAGACCATGTCAA-ACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
26923134 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
26923187 AGGGATACCATGTAAGACCATGTCAAGATATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
26923232 TAAAAAAGAA
Statistics
Matches: 122, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
53 57 0.47
54 55 0.45
55 10 0.08
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:26926402 original size:2 final size:2
Alignment explanation
Indices: 26926395--26926441 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
26926385 CAATTACACT
* *
26926395 TA TA TA TA TA TA TA TA TA TA TA TA AA TG TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26926437 TA TA T
1 TA TA T
26926442 TTTTTTTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:26926688 original size:39 final size:39
Alignment explanation
Indices: 26926645--26926742 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
26926635 CCGGACATAT
* *
26926645 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
26926684 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
*
26926723 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
26926743 GTCTTTAAGC
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGGTATAA
Found at i:26927112 original size:2 final size:2
Alignment explanation
Indices: 26927100--26927129 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26927090 TACTTTCAGA
26927100 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26927130 CGAATTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26930377 original size:9 final size:9
Alignment explanation
Indices: 26930363--26930387 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
26930353 TGGATTATTT
26930363 TGAATGAAA
1 TGAATGAAA
26930372 TGAATGAAA
1 TGAATGAAA
26930381 TGAATGA
1 TGAATGA
26930388 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:26930742 original size:44 final size:43
Alignment explanation
Indices: 26930663--26930797 Score: 130
Period size: 44 Copynumber: 3.1 Consensus size: 43
26930653 GAACGTTGAT
* * * *
26930663 ATCGATTTGAGATATCGTATAAGACCGTGTCTGGGACATAGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATGTATGGGACATAGGC
* *
26930706 CTCGATTTGAGATTTACGTGTAAGACCATGTATGGGACATCGGC
1 ATCGATTTGAGATTT-CGTGTAAGACCATGTATGGGACATAGGC
* * * * * *
26930750 ATCGTATCT-A-ATTTCGTGTAAGACCCTATCTGGGATAGAGGC
1 ATCG-ATTTGAGATTTCGTGTAAGACCATGTATGGGACATAGGC
26930792 ATCGAT
1 ATCGAT
26930798 ACTGAATTAC
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.03
42 26 0.34
43 17 0.22
44 28 0.37
45 3 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
ATCGATTTGAGATTTCGTGTAAGACCATGTATGGGACATAGGC
Found at i:26930784 original size:42 final size:43
Alignment explanation
Indices: 26930663--26930818 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
26930653 GAACGTTGAT
* * * *
26930663 ATCGATTTGAGATATCGTATAAGACCGTGTCTGGGACATAGGC
1 ATCGATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGC
* * * *
26930706 CTCGATTTGAGATTTACGTGTAAGACCATGTATGGGACATCGGC
1 ATCGATCTGAGATTT-CGTGTAAGACCATGTCTGGGACATAGGC
* * * *
26930750 ATCGTATCT-A-ATTTCGTGTAAGACCCTATCTGGGATAGAGGC
1 ATCG-ATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGC
* *
26930792 ATCGATACTGA-ATTACATGTAAGACCA
1 ATCGAT-CTGAGATTTCGTGTAAGACCA
26930819 CATCCGAGAC
Statistics
Matches: 92, Mismatches: 17, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 31 0.34
44 28 0.30
45 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (43 bp):
ATCGATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGC
Found at i:26933817 original size:40 final size:40
Alignment explanation
Indices: 26933751--26933917 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
26933741 AAATTGAATG
* * *
26933751 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
26933790 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
26933830 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
26933870 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
26933910 ATATCCGG
1 ATATCCGG
26933918 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:26941827 original size:40 final size:40
Alignment explanation
Indices: 26941761--26941927 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
26941751 AAATTGAATG
* * *
26941761 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
26941800 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
26941840 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
26941880 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
26941920 ATATCCGG
1 ATATCCGG
26941928 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:26944362 original size:26 final size:26
Alignment explanation
Indices: 26944315--26944393 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 26
26944305 AGCCATATCG
*
26944315 GGAAGCTC-CGGAGAGCCATTAATCA
1 GGAAGCTCACAGAGAGCCATTAATCA
* * *
26944340 GGAAGCTCATAGAGAGCCTTTAATCG
1 GGAAGCTCACAGAGAGCCATTAATCA
*
26944366 GGAAGCTCACAAAGAGCCA-TAATC-
1 GGAAGCTCACAGAGAGCCATTAATCA
26944390 GGAA
1 GGAA
26944394 AGCTTAATAG
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
24 4 0.09
25 13 0.28
26 29 0.63
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAGAGAGCCATTAATCA
Found at i:26944396 original size:25 final size:25
Alignment explanation
Indices: 26944280--26944397 Score: 116
Period size: 25 Copynumber: 4.7 Consensus size: 25
26944270 AGCTCCAAAT
* *
26944280 AGCCATATATCGGGAAGTTCA-AGCG
1 AGCCATA-ATCGGGAAGCTCACAGAG
*
26944305 AGCCAT-ATCGGGAAGCTC-CGGAG
1 AGCCATAATCGGGAAGCTCACAGAG
* *
26944328 AGCCATTAATCAGGAAGCTCATAGAG
1 AGCCA-TAATCGGGAAGCTCACAGAG
* *
26944354 AGCCTTTAATCGGGAAGCTCACAAAG
1 AGCC-ATAATCGGGAAGCTCACAGAG
*
26944380 AGCCATAATCGGAAAGCT
1 AGCCATAATCGGGAAGCT
26944398 TAATAGAGCT
Statistics
Matches: 76, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
23 18 0.24
24 1 0.01
25 29 0.38
26 28 0.37
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (25 bp):
AGCCATAATCGGGAAGCTCACAGAG
Found at i:26946879 original size:27 final size:26
Alignment explanation
Indices: 26946813--26946891 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
26946803 AGCTGCCAAA
*
26946813 AACAGTAAATGTGGCAAAGCCACCAGT
1 AACAGT-AATGTGGCATAGCCACCAGT
* *
26946840 ATCACTAATTGTGGCATAGCCACCAGT
1 AACAGTAA-TGTGGCATAGCCACCAGT
* *
26946867 AACAGTGAATGTGACATAGTCACCA
1 AACAGT-AATGTGGCATAGCCACCA
26946892 ATACAATACT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 39 0.91
28 2 0.05
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAGT
Found at i:26947087 original size:27 final size:27
Alignment explanation
Indices: 26947050--26947205 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
26947040 TGCCATGCAA
* *
26947050 GGGTATCACGGTCATTTTACCTTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
*
26947077 GGGCATTACGGTCATTTTACCCTAC-G
1 GGGTATTACGGTCATTTTACCCTACAG
*
26947103 AGGGTATTACAGTCATTTTACCCTACAG
1 -GGGTATTACGGTCATTTTACCCTACAG
*
26947131 GGGTATTACGGTTATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
26947158 GGGTATTACGGTCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAG
*
26947185 GGGTATTACGGTTATTTTACC
1 GGGTATTACGGTCATTTTACC
26947206 TATTCTGGGG
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 116 0.98
28 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (27 bp):
GGGTATTACGGTCATTTTACCCTACAG
Found at i:26947167 original size:81 final size:81
Alignment explanation
Indices: 26947032--26947205 Score: 242
Period size: 81 Copynumber: 2.1 Consensus size: 81
26947022 CCTAAGGGCT
* * *
26947032 AGTCATTTTGCCATGCAAGGGTATCACGGTCATTTTACCTTACAGGGGCATTACGGTCATTTTAC
1 AGTCATTTTACCATACAAGGGTATCACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
26947097 CCTAC-GAGGGTATTAC
66 CCTACAG-GGGTATTAC
* * * * *
26947113 AGTCATTTTACCCTACAGGGGTATTACGGTTATTTTACCCTACAGGGGTATTACGGTCATTTTAC
1 AGTCATTTTACCATACAAGGGTATCACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
26947178 CCTACAGGGGTATTAC
66 CCTACAGGGGTATTAC
* *
26947194 GGTTATTTTACC
1 AGTCATTTTACC
26947206 TATTCTGGGG
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
81 81 0.99
82 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.34
Consensus pattern (81 bp):
AGTCATTTTACCATACAAGGGTATCACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTAC
CCTACAGGGGTATTAC
Found at i:26949212 original size:28 final size:28
Alignment explanation
Indices: 26949170--26949246 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
26949160 ATCTTCGATG
*
26949170 TCTCGCACACTAAGTTCCATACTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
* * *
26949198 TCTCGCACACCAAGTGCCATTCTTAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
* *
26949226 TTTTGCACACTAAGTGCCATA
1 TCTCGCACACTAAGTGCCATA
26949247 TACATATATA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAATA
Found at i:26953607 original size:43 final size:42
Alignment explanation
Indices: 26953516--26953667 Score: 127
Period size: 43 Copynumber: 3.7 Consensus size: 42
26953506 AGTACTAAAC
*** * *
26953516 CAATGCCATATCCCAGATATGGTCTTACATGGGGTCTCGTTT
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATAT
** * *
26953558 TGATGCCAATATCCCAGTTATGGTCTTACATGAAATCTTATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGAAATCTCATAT
* *
26953601 CAATGCCATATCCCAGATA----CTTACACGAAGTCTCATAAT
1 CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCAT-AT
*
26953640 -GATGCCATATCCCAGGA-ATGGTCTTACA
1 CAATGCCATATCCCA-GATATGGTCTTACA
26953668 CATAGTCTCG
Statistics
Matches: 87, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
38 28 0.32
39 4 0.05
42 22 0.25
43 33 0.38
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGAAATCTCATAT
Found at i:26958385 original size:29 final size:28
Alignment explanation
Indices: 26958254--26958385 Score: 142
Period size: 29 Copynumber: 4.6 Consensus size: 28
26958244 GTGACAAGAT
*
26958254 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCGAGCTT-AAAAGTA
* *
26958283 TGGCACTAAGTGTGCAAGCGTGAAAAGTA
1 TGGCACTAAGTGTGCGAGC-TTAAAAGTA
*
26958312 TGGCACTAAGTGTGCGAACTTAAATTA-TA
1 TGGCACTAAGTGTGCGAGCTTAAA--AGTA
* *
26958341 TGGCACTATGTGTGCGAGCTTAAATCA-CA
1 TGGCACTAAGTGTGCGAGCTTAAA--AGTA
26958370 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26958386 TGATCGAGTA
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
28 4 0.04
29 85 0.93
30 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAAAGTA
Found at i:26966562 original size:29 final size:28
Alignment explanation
Indices: 26966460--26966562 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
26966450 GTGACAAGAT
*
26966460 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
*
26966489 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
26966518 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
26966547 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
26966563 TGATCGATTA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
28 4 0.06
29 60 0.92
30 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:26977993 original size:40 final size:40
Alignment explanation
Indices: 26977938--26978119 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
26977928 TATTCGAATG
*
26977938 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
26977978 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26978018 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26978058 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
26978098 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26978120 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 119 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26981937 original size:34 final size:34
Alignment explanation
Indices: 26981885--26981965 Score: 135
Period size: 34 Copynumber: 2.4 Consensus size: 34
26981875 ATATCTTGAG
* *
26981885 ATAATATATATATGTCATACCAACACATCATGTGT
1 ATAA-ATATATATATCATACCAACACATCATGTGC
26981920 ATAAATATATATATCATACCAACACATCATGTGC
1 ATAAATATATATATCATACCAACACATCATGTGC
26981954 ATAAATATATAT
1 ATAAATATATAT
26981966 GTGCAGGTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
34 40 0.91
35 4 0.09
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.33
Consensus pattern (34 bp):
ATAAATATATATATCATACCAACACATCATGTGC
Found at i:26982952 original size:43 final size:43
Alignment explanation
Indices: 26982897--26983156 Score: 326
Period size: 43 Copynumber: 6.0 Consensus size: 43
26982887 ATATCATACA
* * * *
26982897 ATGCCAACGTCCCAGATGTGGTCTTACATGTAACCTCATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
26982940 ATGCC-ACTGTCCCAGACAG-GGTCTTACTCGTAAACACATATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * *
26982983 ATGCCAACATCCCAGATGTGGTCTTACGCGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
***
26983026 ATGCCAACGTCTTGGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * *
26983069 ATGCCAACATCGCAGACGTGGTCTTATACGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
*
26983112 ATGCCAACGTCCCAGACGTTGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
26983155 AT
1 AT
26983157 ATCACATATA
Statistics
Matches: 185, Mismatches: 28, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
42 3 0.02
43 179 0.97
44 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:26991902 original size:32 final size:32
Alignment explanation
Indices: 26991861--26991925 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
26991851 GATGAATAGT
26991861 TAAACGACTACTATGTGTTTCATTCAAAATCA
1 TAAACGACTACTATGTGTTTCATTCAAAATCA
26991893 TAAACGACTACTATGTGTTTCATTCAAAATCA
1 TAAACGACTACTATGTGTTTCATTCAAAATCA
26991925 T
1 T
26991926 CTGAATTGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.35
Consensus pattern (32 bp):
TAAACGACTACTATGTGTTTCATTCAAAATCA
Found at i:26996908 original size:40 final size:40
Alignment explanation
Indices: 26996766--26996943 Score: 130
Period size: 40 Copynumber: 4.4 Consensus size: 40
26996756 TCGATATCTT
* * * *
26996766 GCACACTAAGTGCCAAAGTATAGCTGAAGCTATTATC-ATCTC
1 GCACACTAAGTGCCATA-TATAGCCGAAGCTA-TCTCGAT-AC
* * * * *
26996808 ACACACTAAGT-ACATTTCATAGCTGAAGCTATCTC-AGTCTC
1 GCACACTAAGTGCCATAT-ATAGCCGAAGCTATCTCGA-T-AC
* * *
26996849 GCACACTAGGTGCCATATATAGTCGAAGCTAT-TCCGATTC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCT-CGATAC
* **
26996889 TCACACTAAGTGCTTTATATAGCCGAAGCTATCTCGATAC
1 GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGATAC
26996929 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
26996944 AACATAATCG
Statistics
Matches: 110, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
40 52 0.47
41 43 0.39
42 15 0.14
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCCGAAGCTATCTCGATAC
Found at i:26996919 original size:81 final size:83
Alignment explanation
Indices: 26996766--26996945 Score: 203
Period size: 81 Copynumber: 2.2 Consensus size: 83
26996756 TCGATATCTT
*
26996766 GCACACTAAGTGCCAAAGTATAGCTGAAGCTATTATCATCTCACACACTAAGTACATTTCATAGC
1 GCACACTAAGTGCCAAAGTATAGCTGAAGCTATTACCATCTCACACACTAAGTACATTTCATAGC
*
26996831 TGAAGCTATCTCAGTCTC
66 CGAAGCTATCTCAGTCTC
* * * * *
26996849 GCACACTAGGTGCCATA-TATAG-TCGAAGCTATT-CCGAT-TCTCACACTAAGTGC-TTTATAT
1 GCACACTAAGTGCCAAAGTATAGCT-GAAGCTATTACC-ATCTCACACACTAAGTACATTT-CAT
*
26996909 AGCCGAAGCTATCTC-GAT-AC
63 AGCCGAAGCTATCTCAG-TCTC
26996929 GCACACTAAGTGCCAAA
1 GCACACTAAGTGCCAAA
26996946 CATAATCGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
80 20 0.24
81 32 0.39
82 16 0.19
83 15 0.18
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (83 bp):
GCACACTAAGTGCCAAAGTATAGCTGAAGCTATTACCATCTCACACACTAAGTACATTTCATAGC
CGAAGCTATCTCAGTCTC
Found at i:26999674 original size:27 final size:27
Alignment explanation
Indices: 26999644--27000048 Score: 512
Period size: 27 Copynumber: 15.0 Consensus size: 27
26999634 AAAGTACTCC
*
26999644 CGATTTACAGAATTACCGTTTTACCAT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26999671 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
26999698 CGATTTTTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26999725 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26999752 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26999779 CGATTTACAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26999806 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26999833 C-AGTTTACAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26999860 TGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
26999887 C-AGTTTA-AGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
26999913 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
26999940 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
26999967 CGATTTATAGAATTACTGATTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
26999994 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
27000021 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
27000048 C
1 C
27000049 AATTGTGAAA
Statistics
Matches: 334, Mismatches: 37, Indels: 14
0.87 0.10 0.04
Matches are distributed among these distances:
26 25 0.07
27 307 0.92
28 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:27000087 original size:27 final size:27
Alignment explanation
Indices: 27000065--27000252 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 27
27000055 GAAATTACTA
27000065 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
27000092 AAATACCCCTATAGGGTAGAATTTCTA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
27000119 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
27000146 AAATACCCCCGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
27000173 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
27000200 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* ** * *
27000227 AGATACCTTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
27000253 ATTTTGCCCC
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:27000089 original size:161 final size:160
Alignment explanation
Indices: 26999644--27000072 Score: 418
Period size: 161 Copynumber: 2.7 Consensus size: 160
26999634 AAAGTACTCC
* * * * * ** *
26999644 CGATTTACAGAATTACCGTTTTACCATC-GATTTACAGAATTATCGTTTTACCCTCGATTTTTAA
1 CGATTTACAGAATTACCATTTTACCCTCAG-TTTACAAAATTACCATTTTACCCTCGATTTACAG
* * ** ***** * *
26999708 AATTACCATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTT
65 AATTATCGTTTTACCCTCAATTTA-AGAATTACTAAAATACCCTCA-TGTATAGAATTACCATTT
26999773 TACCCTCGATTTACAAAATTACCATTTTACCCT
128 TACCCTCGATTTACAAAATTACCATTTTACCCT
* *
26999806 CGATTTACAGAATTACCATTTTACCCTCAGTTTACAGAATTACCATTTTACCCTTGATTTACAGA
1 CGATTTACAGAATTACCATTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTTACAGA
* **** * **
26999871 ATTATCGTTTTACCCTCAGTTTAAGAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTA
66 ATTATCGTTTTACCCTCAATTTAAGAATTACTAAAATACCCTC-ATGTATAGAATTACCATTTTA
** *
26999936 CCCTCGATTTGTAAAATTACCGTTTTACCCT
130 CCCTCGATTTACAAAATTACCATTTTACCCT
* * * *
26999967 CGATTTATAGAATTACTGA-TTTACCCTC-GATTTACAAAATTATCGTTTTACCCTCGATTTACA
1 CGATTTACAGAATTAC-CATTTTACCCTCAG-TTTACAAAATTACCATTTTACCCTCGATTTACA
*
27000030 GAATTA-CTGTTTTACCCTCAATTGTGA-AATTACTAAAATACCC
64 GAATTATC-GTTTTACCCTCAATT-TAAGAATTACTAAAATACCC
27000073 CTGTAGGGTA
Statistics
Matches: 229, Mismatches: 32, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
160 2 0.01
161 149 0.65
162 77 0.34
163 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (160 bp):
CGATTTACAGAATTACCATTTTACCCTCAGTTTACAAAATTACCATTTTACCCTCGATTTACAGA
ATTATCGTTTTACCCTCAATTTAAGAATTACTAAAATACCCTCATGTATAGAATTACCATTTTAC
CCTCGATTTACAAAATTACCATTTTACCCT
Found at i:27000099 original size:134 final size:134
Alignment explanation
Indices: 26999708--27000099 Score: 327
Period size: 134 Copynumber: 2.9 Consensus size: 134
26999698 CGATTTTTAA
* * * * **
26999708 AATTACCATTTTACCCTTGATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACCATTT
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAGTTTA-AGAATTACTGTTT
* * * * *** * **
26999773 TACCCTCGATTTACAAAATTACCATTTTACCCTCGAT--TTACAGAATTACC-ATTTTACCCTCA
65 TACCCTCAATTTAGAGAATTACTAAAATACCCTCGATGGGTA-A-AATTACCGA-AATACCCTCA
26999835 GTTTACAG
127 GTTTACAG
* *
26999843 AATTACCATTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCAGTTTAAGAATTACTGTTTT
1 AATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAGTTTAAGAATTACTGTTTT
* * **** ** ***
26999908 ACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTC-GATT
66 ACCCTCAATTTAGAGAATTACTAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCAG-TT
*
26999972 TATAG
130 TACAG
*
26999977 AATTACTGA-TTTACCCTCGATTTACAAAATTATCGTTTTACCCTC-GATTTACAGAATTACTGT
1 AATTAC-CATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAG-TTTA-AGAATTACTGT
*
27000040 TTTACCCTCAATTGT-GA-AATTACTAAAATACCC-CTG-TAGGGTAGAATTACCGAAATACCC
63 TTTACCCTCAATT-TAGAGAATTACTAAAATACCCTC-GAT-GGGTAAAATTACCGAAATACCC
27000100 CTATAGGGTA
Statistics
Matches: 221, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
133 4 0.02
134 139 0.63
135 75 0.34
136 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.10, T:0.39
Consensus pattern (134 bp):
AATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCAGTTTAAGAATTACTGTTTT
ACCCTCAATTTAGAGAATTACTAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCAGTTT
ACAG
Found at i:27000489 original size:27 final size:26
Alignment explanation
Indices: 27000451--27000533 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
27000441 CGGAGGAAGC
*
27000451 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
27000478 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
27000504 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
27000531 GTT
1 GTT
27000534 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:27000866 original size:27 final size:27
Alignment explanation
Indices: 27000844--27000910 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
27000834 TAGGTGGGTT
*
27000844 TGCCACATTATCTGAT-TCTGGTGGCTC
1 TGCCACAATATCT-ATATCTGGTGGCTC
*
27000871 TGCCACAATATCTATATCTGGTGACTC
1 TGCCACAATATCTATATCTGGTGGCTC
* *
27000898 TGTCACGATATCT
1 TGCCACAATATCT
27000911 GTTCTGGCAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTATATCTGGTGGCTC
Found at i:27001044 original size:6 final size:6
Alignment explanation
Indices: 27001035--27001112 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
27001025 TTGCATTCAT
*
27001035 ATTCTG ATTCTG ATTCTG -TCATCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
27001084 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCT
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCT
27001113 CATTTTGGTT
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
5 4 0.07
6 51 0.84
7 4 0.07
8 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:27001098 original size:30 final size:31
Alignment explanation
Indices: 27001035--27001112 Score: 124
Period size: 30 Copynumber: 2.5 Consensus size: 31
27001025 TTGCATTCAT
27001035 ATTCTGATTCTGATTCTGTCATCTAATTCTG
1 ATTCTGATTCTGATTCTGTCATCTAATTCTG
*
27001066 ATTCTGATTCTGATTCTGTTA-CTAATAT-TG
1 ATTCTGATTCTGATTCTGTCATCTAAT-TCTG
27001096 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
27001113 CATTTTGGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
30 24 0.53
31 21 0.47
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCATCTAATTCTG
Found at i:27006582 original size:40 final size:40
Alignment explanation
Indices: 27006527--27006711 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
27006517 TATTCGGACG
*
27006527 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
27006567 ATATCCGGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
* *
27006610 ATACCCGGGCCAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
27006650 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
* *
27006690 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
27006712 TACTTGGGTT
Statistics
Matches: 126, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 15 0.12
40 73 0.58
41 2 0.02
43 34 0.27
44 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:27006730 original size:83 final size:82
Alignment explanation
Indices: 27006541--27006711 Score: 231
Period size: 83 Copynumber: 2.1 Consensus size: 82
27006531 CCGAGCTAAG
* * *
27006541 TCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCTGAAGGCATTTGTGCGAGTAGT
1 TCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTGTGC-AGTAGT
*
27006606 TGCTATACCCGGGCCAAG
65 TGCTATACCCGGGCCAAA
* *
27006624 TCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-G-AGTT
1 TCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTGTGCAGTAGTT
* *
27006687 GCTATATCC-GGCTAAA
66 GCTATACCCGGGCCAAA
*
27006703 TCTCGAAGG
1 TCCCGAAGG
27006712 TACTTGGGTT
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.16
80 12 0.15
81 1 0.01
83 55 0.68
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (82 bp):
TCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTGTGCAGTAGTT
GCTATACCCGGGCCAAA
Found at i:27011703 original size:46 final size:46
Alignment explanation
Indices: 27011653--27011828 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
27011643 TGGTTGAGCA
27011653 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
27011699 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
27011744 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
27011792 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27011829 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 58 0.54
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:27011809 original size:93 final size:93
Alignment explanation
Indices: 27011650--27011821 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
27011640 GGATGGTTGA
* * *
27011650 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
27011715 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
27011743 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
27011807 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
27011822 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 4 0.05
93 71 0.95
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:27016004 original size:40 final size:40
Alignment explanation
Indices: 27015960--27016103 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
27015950 GTTCAAAACA
* * ***
27015960 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
27016000 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
27016040 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
27016079 CCTTCGGG-CTTAGCCCGGATATCAC
1 CCTTCGGGACTTAGCCCGGATATCAC
27016104 TCGAACATTC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 54 0.57
40 40 0.43
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:27016072 original size:39 final size:39
Alignment explanation
Indices: 27015990--27016103 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
27015980 TATGGTAACC
* *
27015990 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
27016030 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
27016069 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
27016104 TCGAACATTC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 54 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:27024049 original size:40 final size:40
Alignment explanation
Indices: 27024005--27024148 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
27023995 GTTCAAAACA
* * ***
27024005 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
* * *
27024045 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
** *
27024085 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
27024124 CCTTCGGG-CTTAGCCCGGATATCAC
1 CCTTCGGGACTTAGCCCGGATATCAC
27024149 TCGAACATTC
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 54 0.57
40 40 0.43
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCACAACCCGCACAAATG
Found at i:27024117 original size:39 final size:39
Alignment explanation
Indices: 27024035--27024148 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
27024025 TATGGTAACC
* *
27024035 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
27024075 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
27024114 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
27024149 TCGAACATTC
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 54 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:27027120 original size:40 final size:37
Alignment explanation
Indices: 27027066--27027186 Score: 134
Period size: 39 Copynumber: 3.1 Consensus size: 37
27027056 GCAAAAATTG
*
27027066 TAAAACAAAGCAATAGCGGCGTTTTTGGTAAGATGCCGC
1 TAAAACAAAGCAATAGCGGCG-TTTTGGTAA-ACGCCGC
* *
27027105 TAAAACCAGAGCAATAGCGGCGTTTTAGTAAAGCGCCGC
1 TAAAA-CAAAGCAATAGCGGCGTTTTGGTAAA-CGCCGC
* * * *
27027144 TAAAAAAAAACATTAGCGGCGCTTTTGGTGAACGCCGC
1 TAAAACAAAGCAATAGCGGCG-TTTTGGTAAACGCCGC
27027182 TAAAA
1 TAAAA
27027187 ACCAGAGCAT
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
38 24 0.34
39 31 0.44
40 15 0.21
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.21
Consensus pattern (37 bp):
TAAAACAAAGCAATAGCGGCGTTTTGGTAAACGCCGC
Found at i:27027209 original size:40 final size:40
Alignment explanation
Indices: 27027100--27027209 Score: 120
Period size: 38 Copynumber: 2.8 Consensus size: 40
27027090 TTGGTAAGAT
* *
27027100 GCCGCT-AAAACCAGAGCAATAGCGGCGTTTTAGTAAAGC
1 GCCGCTAAAAACCAGAGCATTAGCGGCCTTTTAGTAAAGC
* * * *
27027139 GCCGCTAAAAA--AAAACATTAGCGGCGCTTTTGGTGAA-C
1 GCCGCTAAAAACCAGAGCATTAGCGGC-CTTTTAGTAAAGC
27027177 GCCGCTAAAAACCAGAGCATTAGCGGCACTTTT
1 GCCGCTAAAAACCAGAGCATTAGCGGC-CTTTT
27027210 TTTAACTTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 7
0.78 0.12 0.09
Matches are distributed among these distances:
38 23 0.40
39 14 0.24
40 21 0.36
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.20
Consensus pattern (40 bp):
GCCGCTAAAAACCAGAGCATTAGCGGCCTTTTAGTAAAGC
Found at i:27027451 original size:81 final size:80
Alignment explanation
Indices: 27027293--27027462 Score: 243
Period size: 81 Copynumber: 2.1 Consensus size: 80
27027283 TTAAAAAATA
*
27027293 CCGCAAAAAACATAGCAGTTAACGAAAACGACGTCGTTTTAATTGGATATTTAGGAGAGTAGCAG
1 CCGCAAAAAACATAGCAGTTAACGAAAACGACATCGTTTTAATTGGATATTTAGGAGAGTAGCAG
*
27027358 CGTTTTCGAAAAACG
66 CATTTTCGAAAAACG
* *
27027373 CCGCAAAAAACATAGCAGTTTAACGAAAACGACATCGTTTTAATTGGATTTTTAGGGGAGTA-CT
1 CCGCAAAAAACATAGCAG-TTAACGAAAACGACATCGTTTTAATTGGATATTTAGGAGAGTAGC-
* **
27027437 GGCATTTTTTAAAAACG
64 AGCATTTTCGAAAAACG
*
27027454 CCACAAAAA
1 CCGCAAAAA
27027463 GAAAAAAGTA
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 19 0.24
81 61 0.76
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (80 bp):
CCGCAAAAAACATAGCAGTTAACGAAAACGACATCGTTTTAATTGGATATTTAGGAGAGTAGCAG
CATTTTCGAAAAACG
Found at i:27031694 original size:14 final size:14
Alignment explanation
Indices: 27031675--27031705 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
27031665 ATTATTTTTA
27031675 AATTAAAAATATTT
1 AATTAAAAATATTT
*
27031689 AATTAAAAGTATTT
1 AATTAAAAATATTT
27031703 AAT
1 AAT
27031706 ATTAAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AATTAAAAATATTT
Found at i:27032114 original size:183 final size:183
Alignment explanation
Indices: 27031806--27032140 Score: 643
Period size: 183 Copynumber: 1.8 Consensus size: 183
27031796 ATTCAGCATT
* *
27031806 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGAAT
1 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
27031871 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
66 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
*
27031936 CTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
131 CTCTTATAATCTTACATCTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
27031989 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
1 AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
27032054 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
66 TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
27032119 CTCTTATAATCTTACATCTGTC
131 CTCTTATAATCTTACATCTGTC
27032141 CTAGGTACTA
Statistics
Matches: 149, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 149 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (183 bp):
AGTTACTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAACTGCCATTTAATCTTCGAAA
TAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGCTA
CTCTTATAATCTTACATCTGTCTGTATTAGTGAATTAATGTTGTCTGTATTTC
Found at i:27032602 original size:9 final size:9
Alignment explanation
Indices: 27032547--27032604 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
27032537 ACCTTCTCTC
*
27032547 ACATAACCT
1 ACATAACTT
*
27032556 ACATAATTT
1 ACATAACTT
*
27032565 ACATAACTC
1 ACATAACTT
*
27032574 ACATAACAT
1 ACATAACTT
27032583 ACATAACAACTT
1 ACAT---AACTT
27032595 ACATAACTT
1 ACATAACTT
27032604 A
1 A
27032605 ACTAATACAT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
9 31 0.79
12 8 0.21
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (9 bp):
ACATAACTT
Found at i:27038170 original size:21 final size:21
Alignment explanation
Indices: 27038146--27038195 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
27038136 TCAGAGTGGT
27038146 GGCAGCAACAAGGGAGGCGGA
1 GGCAGCAACAAGGGAGGCGGA
***
27038167 GGCAGCAGTGAGGGAGGCGGA
1 GGCAGCAACAAGGGAGGCGGA
27038188 -GCAG-AACA
1 GGCAGCAACA
27038196 GAAAATACAG
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 18 0.78
ACGTcount: A:0.32, C:0.18, G:0.48, T:0.02
Consensus pattern (21 bp):
GGCAGCAACAAGGGAGGCGGA
Found at i:27038691 original size:43 final size:43
Alignment explanation
Indices: 27038492--27038813 Score: 335
Period size: 43 Copynumber: 7.3 Consensus size: 43
27038482 ACTGGGCAAA
* ** *
27038492 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTA-AAGACCAAGACTT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTC-T
* * ** ** *
27038535 TTAGTGGCGCTTTTTTAAAAAA-CGCCACTA-AAGAACAAGACTT
1 TTAGCGGCG-TTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTC-T
* * *
27038578 TTAGCGGTGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
*
27038621 TTAGCGGCGTTTTTTAAAAAAGTGCCGCTATAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
27038664 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
* *
27038707 TTAGCGGCGCTTTCATTTTTTATATAAGCGCCGCTATAAGTCCTGGTCT
1 TTAGCGGCG------TTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
* * * * * *
27038756 TTAGTGGCATTTTTTATATAAGCGCTGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
27038799 TTAGCGGCGTTTTTT
1 TTAGCGGCGTTTTTT
27038814 TAACAAAACT
Statistics
Matches: 244, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
42 10 0.04
43 177 0.73
44 18 0.07
49 39 0.16
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (43 bp):
TTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCT
Found at i:27038769 original size:92 final size:86
Alignment explanation
Indices: 27038577--27038813 Score: 321
Period size: 92 Copynumber: 2.7 Consensus size: 86
27038567 GAACAAGACT
**
27038577 TTTAGCGGTGTTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAA
1 TTTAGCGGCATTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAA
*
27038642 GTGCCGCTATAAGTCCTGGTC
66 GCGCCGCTATAAGTCCTGGTC
* * *
27038663 TTTAGCGGCGTTTTTTAAAAAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCGCTTTCATTTTTT
1 TTTAGCGGCATTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCG------TTTTTT
* *
27038728 ATATAAGCGCCGCTATAAGTCCTGGTC
60 AAAAAAGCGCCGCTATAAGTCCTGGTC
* * *
27038755 TTTAGTGGCATTTTTTATATAAGCGCTGCTAAAAGTCCTGGTCTTTAGCGGCGTTTTTT
1 TTTAGCGGCATTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCGTTTTTT
27038814 TAACAAAACT
Statistics
Matches: 133, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
86 56 0.42
92 77 0.58
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.38
Consensus pattern (86 bp):
TTTAGCGGCATTTTTTATATAAGCGCCGCTATAAGTCCTGGTCTTTAGCGGCGTTTTTTAAAAAA
GCGCCGCTATAAGTCCTGGTC
Found at i:27049079 original size:47 final size:48
Alignment explanation
Indices: 27048961--27049091 Score: 185
Period size: 47 Copynumber: 2.8 Consensus size: 48
27048951 GTGTGAGCGA
* **
27048961 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAAGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAGAAGAGT
* **
27049009 TACCTTGATATGGCTACAAGCCATGGTATAGGTACTCCGG-GATA-AGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAGA-AGAGT
27049056 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
27049092 TATCGATTGA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 38 0.52
48 35 0.48
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGAGAAGAGT
Found at i:27049110 original size:47 final size:47
Alignment explanation
Indices: 27048964--27049110 Score: 140
Period size: 47 Copynumber: 3.1 Consensus size: 47
27048954 TGAGCGATAC
*
27048964 CTTGATTTGGCTACGGGCCATGGTATAGGTA-TTTTGGA-GAAGAGTTA
1 CTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGGATG-AGA-TTA
* ** *** *
27049011 CCTTGATATGGCTACAAGCCATGGTATAGGTACTCCGGGATAAG-TTA
1 -CTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGGATGAGATTA
*
27049058 CCTTGATTTGGCTACGGGCCATGGTATAGGTACTTATCGATTGAGATT-
1 -CTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGGA-TGAGATTA
27049106 CTTGA
1 CTTGA
27049111 ATATCCAATT
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
47 41 0.51
48 31 0.39
49 8 0.10
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
CTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGGATGAGATTA
Found at i:27056150 original size:42 final size:42
Alignment explanation
Indices: 27056103--27056256 Score: 184
Period size: 42 Copynumber: 3.7 Consensus size: 42
27056093 ATAAGTTTAT
* * *
27056103 GTGTAAGACCATATCTGGGATACGGCATCGTTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * *
27056145 GTGTAAGACCATGTCTGGGACATGGCATTGATATGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * **
27056186 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATATC
* *
27056229 ATGTAAGACCATATATGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
27056257 TGGTATGATT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
41 20 0.22
42 54 0.58
43 19 0.20
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
Found at i:27056248 original size:84 final size:83
Alignment explanation
Indices: 27056103--27056264 Score: 216
Period size: 84 Copynumber: 1.9 Consensus size: 83
27056093 ATAAGTTTAT
* * ** * * *
27056103 GTGTAAGACCATATCTGGGATACGGCATCGTTATGAGATTTCGTGTAAGACCATGTCTGGGACAT
1 GTGTAAGACCATAGCTGGGATACGGCATCGATATGAGATCCCATGTAAGACCATATATGGGACAT
27056168 GGCATTGATATGAGAATC
66 GGCATTGATATGAGAATC
* * *
27056186 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCATGTAAGACCATATATGGGATA
1 GTGTAAGACCATAGCTGGGATA-CGGCATCGATATGAGATCCCATGTAAGACCATATATGGGACA
*
27056251 TGGCATTGGTATGA
65 TGGCATTGATATGA
27056265 TTCTATATGT
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
83 20 0.30
84 47 0.70
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (83 bp):
GTGTAAGACCATAGCTGGGATACGGCATCGATATGAGATCCCATGTAAGACCATATATGGGACAT
GGCATTGATATGAGAATC
Found at i:27057176 original size:20 final size:19
Alignment explanation
Indices: 27057139--27057177 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
27057129 GTAAAAGGTA
* *
27057139 AAAGTTGTGTTTAATACCT
1 AAAGGTGTGTTAAATACCT
27057158 AAAGGTGTGTTAAATTACCT
1 AAAGGTGTGTTAAA-TACCT
27057178 TGTATCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (19 bp):
AAAGGTGTGTTAAATACCT
Found at i:27058959 original size:28 final size:28
Alignment explanation
Indices: 27058927--27058983 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
27058917 TTGATAAAAC
27058927 AAGTTAATGAGTTGCTTATTGTTTTCAT
1 AAGTTAATGAGTTGCTTATTGTTTTCAT
27058955 AAGTTAATGAGTTGCTTATTGTTTTCAT
1 AAGTTAATGAGTTGCTTATTGTTTTCAT
27058983 A
1 A
27058984 TGAACTTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.07, G:0.18, T:0.49
Consensus pattern (28 bp):
AAGTTAATGAGTTGCTTATTGTTTTCAT
Found at i:27059694 original size:19 final size:19
Alignment explanation
Indices: 27059670--27059722 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
27059660 ACATGGGTTC
27059670 AGGACACGGGCGTGTTCTT
1 AGGACACGGGCGTGTTCTT
27059689 AGGACACGGGCGTGTTCTT
1 AGGACACGGGCGTGTTCTT
* *
27059708 AGCACCCGGGCGTGT
1 AGGACACGGGCGTGT
27059723 GTTCTATACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.23
Consensus pattern (19 bp):
AGGACACGGGCGTGTTCTT
Found at i:27069996 original size:40 final size:40
Alignment explanation
Indices: 27069895--27070039 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
27069885 TACTCGAATG
* *
27069895 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * * *
27069936 ACATCCGGACGAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
27069976 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
27070016 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
27070040 CTTGGGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27073978 original size:50 final size:49
Alignment explanation
Indices: 27073868--27074043 Score: 181
Period size: 50 Copynumber: 3.5 Consensus size: 49
27073858 CTGGTACGCA
* * ** ** *
27073868 TAGTAGCCTGCACATAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
*
27073917 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACACG
**** * * * *
27073967 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGTTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCCGATACACG
27074018 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
27074044 TGCGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
49 29 0.27
50 43 0.40
51 35 0.32
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACACG
Found at i:27080064 original size:27 final size:27
Alignment explanation
Indices: 27080026--27080141 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
27080016 GTAGGCAAAT
*
27080026 CAGTCATTTTACCTTACAGGGGTATTA
1 CAGTCATTTTACCCTACAGGGGTATTA
* * *
27080053 CAGTCATTTTACCCTATAGGGATATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
** * *
27080080 TGGTCATTCTACCTTACAGGGGTATTTA
1 CAGTCATTTTACCCTACAGGGGTA-TTA
* * * * *
27080108 -GGTCATCTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTACAGGGGTATTA
27080134 CAGTCATT
1 CAGTCATT
27080142 CTATCACATA
Statistics
Matches: 68, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
26 2 0.03
27 64 0.94
28 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (27 bp):
CAGTCATTTTACCCTACAGGGGTATTA
Found at i:27080093 original size:54 final size:54
Alignment explanation
Indices: 27080025--27080144 Score: 163
Period size: 54 Copynumber: 2.2 Consensus size: 54
27080015 CGTAGGCAAA
* *
27080025 TCAGTCATTTTACCTTACAGGGGTA-TTACAGTCATTTTACCCTAT-AGGGATATT
1 TCAGTCATTCTACCTTACAGGGGTATTTA-AGTCATCTTACCCTATAAGGG-TATT
** *
27080079 TTGGTCATTCTACCTTACAGGGGTATTTAGGTCATCTTACCCTATAAGGGTATT
1 TCAGTCATTCTACCTTACAGGGGTATTTAAGTCATCTTACCCTATAAGGGTATT
27080133 TCAGTCATTCTA
1 TCAGTCATTCTA
27080145 TCACATAAGG
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 50 0.88
55 7 0.12
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (54 bp):
TCAGTCATTCTACCTTACAGGGGTATTTAAGTCATCTTACCCTATAAGGGTATT
Found at i:27080166 original size:27 final size:27
Alignment explanation
Indices: 27080136--27080371 Score: 337
Period size: 27 Copynumber: 8.7 Consensus size: 27
27080126 GGGTATTTCA
*
27080136 GTCATTCTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
27080163 GTCATTTTATCATATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
27080190 GTCATCTTATTACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
**
27080217 GTCATTTTATCACATAAGGATAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
27080244 ATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
27080271 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
27080298 GTCATTTTATCACATAAGGGCAATATT
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
27080325 GTCATTTTATCACATAAAGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
27080352 TTCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
27080372 TTCAGGTATG
Statistics
Matches: 185, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 185 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:27080194 original size:81 final size:80
Alignment explanation
Indices: 27080109--27080372 Score: 314
Period size: 81 Copynumber: 3.3 Consensus size: 80
27080099 GGGTATTTAG
* ** *
27080109 GTCATCTTA-CCCTATAAGGGTATTTCAGTCATTCTATCACATAAGGGCAAAATCGTCATTTTAT
1 GTCATCTTATCAC-ATAAGGGTAAATC-GTCATTTTATCACATAAGGGCAAAATCGTCATTTTAT
*
27080173 CATATAAGGGAAAAATC
64 CACATAAGGGAAAAATC
* * ** *
27080190 GTCATCTTATTACATAAGGGCAAAATCGTCATTTTATCACATAAGGATAAAATCATCATTTTATC
1 GTCATCTTATCACATAAGGG-TAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATC
*
27080255 ACATAAGGGCAAAATC
65 ACATAAGGGAAAAATC
* * *
27080271 GTCATTTTATCACATAAGGGTAAAATCGTCATTTTATCACATAAGGGCAATATTGTCATTTTATC
1 GTCATCTTATCACATAAGGGT-AAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATC
* * *
27080336 ACATAAAGGTAAAATT
65 ACATAAGGGAAAAATC
* *
27080352 TTCATTTTATCACATAAGGGT
1 GTCATCTTATCACATAAGGGT
27080373 TCAGGTATGC
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
81 153 0.97
82 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (80 bp):
GTCATCTTATCACATAAGGGTAAATCGTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCA
CATAAGGGAAAAATC
Found at i:27082453 original size:20 final size:18
Alignment explanation
Indices: 27082406--27082513 Score: 71
Period size: 20 Copynumber: 5.8 Consensus size: 18
27082396 CAAGATAAAC
27082406 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
27082423 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
* *
27082443 ATTAAATTAATATAATACT
1 ATTAAATTAATAT-TTAAT
*
27082462 ATTAAGATAAATA-TTAA-
1 ATTAA-ATTAATATTTAAT
* *
27082479 ATTAAGTTTAATATTAAACT
1 ATTAA-ATTAATATTTAA-T
*
27082499 ATTAAAATAATATTT
1 ATTAAATTAATATTT
27082514 TTTTGGAATA
Statistics
Matches: 70, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
17 19 0.27
18 7 0.10
19 18 0.26
20 26 0.37
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:27082457 original size:25 final size:26
Alignment explanation
Indices: 27082418--27082478 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
27082408 TAAATTAAAT
27082418 TTAATATTAAGATAATCACT-TTAATA
1 TTAATATTAAGATAAT-ACTATTAATA
* *
27082444 TTAA-ATTAATATAATACTATTAAGA
1 TTAATATTAAGATAATACTATTAATA
*
27082469 TAAATATTAA
1 TTAATATTAA
27082479 ATTAAGTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 3 0.10
25 18 0.60
26 9 0.30
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (26 bp):
TTAATATTAAGATAATACTATTAATA
Found at i:27082484 original size:17 final size:16
Alignment explanation
Indices: 27082439--27082496 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
27082429 ATAATCACTT
*
27082439 TAATATTAAATTAATA
1 TAATATTAAATTAAGA
*
27082455 TAATACT--ATTAAGA
1 TAATATTAAATTAAGA
*
27082469 TAAATATTAAATTAAGTT
1 T-AATATTAAATTAAG-A
27082487 TAATATTAAA
1 TAATATTAAA
27082497 CTATTAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 6 0.18
17 15 0.44
18 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (16 bp):
TAATATTAAATTAAGA
Found at i:27084643 original size:25 final size:25
Alignment explanation
Indices: 27084585--27084668 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
27084575 GCCATTAATT
* * **
27084585 GGGAAGCTCATGAGAGCCAAATATT
1 GGGACGCTCATAAGAGCCAAATAAC
* * * *
27084610 AGGAAGCTCGTAAGAGCCATATAAC
1 GGGACGCTCATAAGAGCCAAATAAC
* *
27084635 GGGATGCTCATAAGAGCTAAATAAC
1 GGGACGCTCATAAGAGCCAAATAAC
27084660 GGGACGCTC
1 GGGACGCTC
27084669 TTGCAAGCTG
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (25 bp):
GGGACGCTCATAAGAGCCAAATAAC
Found at i:27091410 original size:47 final size:47
Alignment explanation
Indices: 27091349--27091469 Score: 147
Period size: 47 Copynumber: 2.6 Consensus size: 47
27091339 ATAATATCTT
* *
27091349 ATTTGGCTATGGGCCATGGTATAGGTATTCA-GAGAGGAGTTA-CATTG
1 ATTTGGCTACGGGCCATGGTATAGGTATTCAGGA-AGAAGTTAGC-TTG
* * *
27091396 ATTTGGCTACGGGCCATGGTATAGGTATTCCGGAATAATTTAGCTTG
1 ATTTGGCTACGGGCCATGGTATAGGTATTCAGGAAGAAGTTAGCTTG
* *
27091443 ATTTGGTTACGAGCCATGGTATAGGTA
1 ATTTGGCTACGGGCCATGGTATAGGTA
27091470 CTTATCGATT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
47 62 0.95
48 3 0.05
ACGTcount: A:0.25, C:0.12, G:0.30, T:0.33
Consensus pattern (47 bp):
ATTTGGCTACGGGCCATGGTATAGGTATTCAGGAAGAAGTTAGCTTG
Found at i:27096592 original size:15 final size:15
Alignment explanation
Indices: 27096568--27096599 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
27096558 TATGCAAGAA
*
27096568 AAATATAAAAGACAT
1 AAATACAAAAGACAT
27096583 AAATACAAAAGACAT
1 AAATACAAAAGACAT
27096598 AA
1 AA
27096600 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:27104336 original size:9 final size:9
Alignment explanation
Indices: 27104314--27104349 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
27104304 GAGGGGAGAA
*
27104314 AATATATAAT
1 AATA-ATAAG
27104324 AATAATAAG
1 AATAATAAG
27104333 AATAATAAG
1 AATAATAAG
27104342 AATAATAA
1 AATAATAA
27104350 CCCTTTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 21 0.84
10 4 0.16
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (9 bp):
AATAATAAG
Found at i:27106429 original size:20 final size:21
Alignment explanation
Indices: 27106394--27106437 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
27106384 TTTATTTAAA
* *
27106394 AATATTTATATTATTTTATTT
1 AATATTTATATAATTTTATAT
27106415 AATATTTA-ATAATTTTATAT
1 AATATTTATATAATTTTATAT
27106435 AAT
1 AAT
27106438 TTTCTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
AATATTTATATAATTTTATAT
Found at i:27108246 original size:14 final size:15
Alignment explanation
Indices: 27108227--27108255 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27108217 ATTATTAAAA
27108227 TAATAA-TAATCATT
1 TAATAATTAATCATT
27108241 TAATAATTAATCATT
1 TAATAATTAATCATT
27108256 ACTTAACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATAATTAATCATT
Found at i:27113704 original size:18 final size:18
Alignment explanation
Indices: 27113681--27113716 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27113671 ACTAATTTTC
27113681 ATTGTTATAAGATTCATT
1 ATTGTTATAAGATTCATT
27113699 ATTGTTATAAGATTCATT
1 ATTGTTATAAGATTCATT
27113717 CTTTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50
Consensus pattern (18 bp):
ATTGTTATAAGATTCATT
Found at i:27114035 original size:65 final size:65
Alignment explanation
Indices: 27113943--27114077 Score: 209
Period size: 65 Copynumber: 2.1 Consensus size: 65
27113933 AATAAAATAA
* * **
27113943 TTTTATCATTTGAATACGAGTCCAAATTTCACCTACAAATAATTGTTACTTTAATATTTTATTAC
1 TTTTATCATTTAAATACGAGTCAAAATTTCACCTACAAATAACCGTTACTTTAATATTTTATTAC
*
27114008 TTTTATCATTTAAATATGCA-TCAAAATTTCACCTACAAATAACCGTTACTTTAATATTTTATTA
1 TTTTATCATTTAAATACG-AGTCAAAATTTCACCTACAAATAACCGTTACTTTAATATTTTATTA
27114072 C
65 C
27114073 TTTTA
1 TTTTA
27114078 ACATAATATT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
65 63 0.98
66 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.04, T:0.45
Consensus pattern (65 bp):
TTTTATCATTTAAATACGAGTCAAAATTTCACCTACAAATAACCGTTACTTTAATATTTTATTAC
Found at i:27124882 original size:40 final size:40
Alignment explanation
Indices: 27124797--27124947 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
27124787 AATTGAATGA
* * * *
27124797 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
27124837 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
27124878 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
27124917 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
27124948 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:27124961 original size:40 final size:40
Alignment explanation
Indices: 27124834--27124963 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
27124824 ATGCTGGAAA
* * *
27124834 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
27124874 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
27124914 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
27124954 TTATATCCGG
1 TTATATCCGG
27124964 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:27124962 original size:80 final size:80
Alignment explanation
Indices: 27124796--27124963 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
27124786 AAATTGAATG
* *
27124796 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
27124861 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
27124876 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
27124939 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
27124956 ATATCCGG
1 ATATCCGG
27124964 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:27132836 original size:124 final size:122
Alignment explanation
Indices: 27132616--27132837 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
27132606 GAATTATGTG
* * * *
27132616 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
27132681 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
27132738 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
27132802 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
27132838 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:27132881 original size:40 final size:40
Alignment explanation
Indices: 27132796--27132946 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
27132786 AATTGAATGA
* * * *
27132796 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
27132836 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
27132877 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
27132916 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
27132947 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:27132960 original size:40 final size:40
Alignment explanation
Indices: 27132833--27132962 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
27132823 ATGCTGGAAA
* * *
27132833 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
27132873 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
27132913 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
27132953 TTATATCCGG
1 TTATATCCGG
27132963 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:27132961 original size:80 final size:80
Alignment explanation
Indices: 27132795--27132962 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
27132785 AAATTGAATG
* *
27132795 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
27132860 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
27132875 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
27132938 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
27132955 ATATCCGG
1 ATATCCGG
27132963 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:27136350 original size:93 final size:93
Alignment explanation
Indices: 27136238--27136408 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
27136228 GCCCATAAGT
* *
27136238 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27136303 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
27136331 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27136396 CGAGTTCGGATGC
66 CGAGCTCGGATGC
27136409 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27136405 original size:46 final size:46
Alignment explanation
Indices: 27136230--27136405 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
27136220 TGTAACCCGC
* * *
27136230 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* *
27136276 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
27136326 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
27136369 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27136406 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 65 0.59
47 28 0.25
49 1 0.01
50 6 0.05
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:27137959 original size:45 final size:45
Alignment explanation
Indices: 27137908--27137999 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
27137898 CTGAATTAGT
27137908 TAATATTCAAGTTAAAAAGATGAATTTAAAATTCGCATACCTTGG
1 TAATATTCAAGTTAAAAAGATGAATTTAAAATTCGCATACCTTGG
27137953 TAATATTCAAGTTAAAAAGATGAATTTAAAATTCGCATACCTTGG
1 TAATATTCAAGTTAAAAAGATGAATTTAAAATTCGCATACCTTGG
27137998 TA
1 TA
27138000 TTTCTAACTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (45 bp):
TAATATTCAAGTTAAAAAGATGAATTTAAAATTCGCATACCTTGG
Found at i:27140139 original size:16 final size:16
Alignment explanation
Indices: 27140118--27140149 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27140108 TAGCTCAATT
27140118 TTTTGTTTAATTTTAA
1 TTTTGTTTAATTTTAA
*
27140134 TTTTGTTTTATTTTAA
1 TTTTGTTTAATTTTAA
27140150 CATGTTGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (16 bp):
TTTTGTTTAATTTTAA
Found at i:27140381 original size:28 final size:28
Alignment explanation
Indices: 27140350--27140412 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
27140340 TCCCATATTA
27140350 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * * *
27140378 ATGGGATATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
27140406 ATGGGGT
1 ATGGGGT
27140413 TGATAATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:27145782 original size:28 final size:28
Alignment explanation
Indices: 27145751--27145813 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
27145741 TCCCATATTA
27145751 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
27145779 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
27145807 ATGGGGT
1 ATGGGGT
27145814 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:27145991 original size:15 final size:15
Alignment explanation
Indices: 27145971--27146016 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
27145961 TAAATAATAA
27145971 ATTTTTAAGTTTTTTT
1 ATTTTTAA-TTTTTTT
**
27145987 ATTTTTAATTTTTAA
1 ATTTTTAATTTTTTT
*
27146002 ATTTTAAATTTTTTT
1 ATTTTTAATTTTTTT
27146017 GAAGATTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (15 bp):
ATTTTTAATTTTTTT
Found at i:27146774 original size:20 final size:21
Alignment explanation
Indices: 27146720--27146774 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
27146710 AGCCTTAAAC
*
27146720 CCCTAACCCCTAAACCATAAT
1 CCCTAAACCCTAAACCATAAT
* *
27146741 CCCTAAATCATAAA-CATAAT
1 CCCTAAACCCTAAACCATAAT
*
27146761 CTCTAAACCCTAAA
1 CCCTAAACCCTAAA
27146775 AACTTAAAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.44, C:0.35, G:0.00, T:0.22
Consensus pattern (21 bp):
CCCTAAACCCTAAACCATAAT
Found at i:27146846 original size:15 final size:14
Alignment explanation
Indices: 27146818--27146855 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
27146808 AAACCCCAAC
27146818 CCCTAAACCATAAT
1 CCCTAAACCATAAT
27146832 CCCTAAACTCATAAT
1 CCCTAAAC-CATAAT
*
27146847 CCATAAACC
1 CCCTAAACC
27146856 TTAAAATAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (14 bp):
CCCTAAACCATAAT
Found at i:27146901 original size:14 final size:13
Alignment explanation
Indices: 27146881--27146923 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
27146871 ATACACTTTA
27146881 AACCCTAAACCAT
1 AACCCTAAACCAT
27146894 ATACCCTAAACCAT
1 A-ACCCTAAACCAT
*
27146908 AACCTCTAAACTAT
1 AACC-CTAAACCAT
27146922 AA
1 AA
27146924 TGATAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (13 bp):
AACCCTAAACCAT
Found at i:27147060 original size:22 final size:22
Alignment explanation
Indices: 27147017--27147065 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
27147007 CTAATTAATC
* * *
27147017 TAAACCCTAAACTCTTATTCCT
1 TAAACCCTAAACTATAAATCCT
*
27147039 TAAACCTTAAACTATAAATCCT
1 TAAACCCTAAACTATAAATCCT
*
27147061 AAAAC
1 TAAAC
27147066 ATGAACCCTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.27, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAACCCTAAACTATAAATCCT
Found at i:27147091 original size:15 final size:14
Alignment explanation
Indices: 27147071--27147115 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
27147061 AAAACATGAA
27147071 CCCTAAACCCTAAAC
1 CCCT-AACCCTAAAC
*
27147086 CCCTAACCCTTAAC
1 CCCTAACCCTAAAC
27147100 CCCTAACACCTAAAC
1 CCCTAAC-CCTAAAC
27147115 C
1 C
27147116 TTAAACCCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 16 0.59
15 11 0.41
ACGTcount: A:0.36, C:0.49, G:0.00, T:0.16
Consensus pattern (14 bp):
CCCTAACCCTAAAC
Found at i:27147093 original size:21 final size:21
Alignment explanation
Indices: 27147070--27147123 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
27147060 TAAAACATGA
*
27147070 ACCCTAAACCCTAAACCCCT-A
1 ACCCTAAACCCT-AACACCTAA
*
27147091 ACCCTTAACCCCTAACACCTAA
1 ACCC-TAAACCCTAACACCTAA
*
27147113 ACCTTAAACCC
1 ACCCTAAACCC
27147124 CAACCTTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.37, C:0.46, G:0.00, T:0.17
Consensus pattern (21 bp):
ACCCTAAACCCTAACACCTAA
Done.