Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 106 of 318
Found at i:32366846 original size:18 final size:18
Alignment explanation
Indices: 32366823--32366889 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
32366813 TACTGTTTAA
32366823 ACTGTTACTACACTGATT
1 ACTGTTACTACACTGATT
* *
32366841 ACTGTTAACTGCATTGATT
1 ACTGTT-ACTACACTGATT
*
32366860 ACTGTTAC-AGCTCT-ATTT
1 ACTGTTACTA-CACTGA-TT
32366878 ACTGTTACTACA
1 ACTGTTACTACA
32366890 ATGGGCCAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
17 1 0.03
18 21 0.54
19 17 0.44
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40
Consensus pattern (18 bp):
ACTGTTACTACACTGATT
Found at i:32366860 original size:19 final size:19
Alignment explanation
Indices: 32366823--32366866 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
32366813 TACTGTTTAA
32366823 ACTGTT-ACTACACTGATT
1 ACTGTTAACTACACTGATT
* *
32366841 ACTGTTAACTGCATTGATT
1 ACTGTTAACTACACTGATT
32366860 ACTGTTA
1 ACTGTTA
32366867 CAGCTCTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (19 bp):
ACTGTTAACTACACTGATT
Found at i:32371339 original size:40 final size:40
Alignment explanation
Indices: 32371257--32371477 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
32371247 ACCCAAGTAT
* * *
32371257 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATAC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
32371296 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
32371336 CTTCGGGACTTAGCCTGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
32371376 CTTCGGGTCTTAACCCGAATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
32371416 CTTCGGATCTTAGTCCGGATATAGTCACTAGTACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
**
32371456 CTTCGGGAATTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
32371478 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 137 0.90
41 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:32378805 original size:39 final size:40
Alignment explanation
Indices: 32378633--32378809 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
32378623 ACCAAGGCCA
* * * * * *
32378633 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
32378672 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
32378712 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
32378752 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
32378791 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
32378810 CATTCAATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.33
40 77 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:32386823 original size:39 final size:40
Alignment explanation
Indices: 32386650--32386827 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
32386640 ACCAAGGCCA
* * * * * * *
32386650 CGGGACTTAACCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
32386690 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
32386730 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
32386770 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
32386809 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
32386828 CATTCAATTT
Statistics
Matches: 118, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
39 31 0.26
40 85 0.72
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:32390163 original size:29 final size:29
Alignment explanation
Indices: 32390130--32390203 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32390120 CCTTCGAGCT
32390130 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
32390159 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
32390188 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
32390204 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:32390164 original size:58 final size:57
Alignment explanation
Indices: 32390071--32390203 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 57
32390061 ATACTCGATT
* * * *
32390071 TCGCACACTTAGTGCCATGCAATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCAT-CAATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * ** * *
32390129 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATCA-ATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
32390187 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
32390204 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 1 0.02
57 4 0.06
58 57 0.92
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (57 bp):
TCGCACACTTAGTGCCATCAATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:32403473 original size:24 final size:24
Alignment explanation
Indices: 32403441--32403501 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
32403431 AAAATCCAAT
* * *
32403441 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
32403465 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
32403489 GCACTATGTGTGC
1 GCACTATGTGTGC
32403502 AAATACGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:32413194 original size:10 final size:9
Alignment explanation
Indices: 32413166--32413191 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32413156 ATTCATTTAT
32413166 TTTTAGTTA
1 TTTTAGTTA
32413175 TTTTAGTTA
1 TTTTAGTTA
32413184 TTTTAGTT
1 TTTTAGTT
32413192 TATGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:32413238 original size:39 final size:39
Alignment explanation
Indices: 32413195--32413271 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
32413185 TTTAGTTTAT
*
32413195 GTCTTTAATTATGTCATAGTTTGAACATCATTAATATGA
1 GTCTTTAATTATGTCATAGTTTCAACATCATTAATATGA
*
32413234 GTCTTTAATTATGTCATAGTTTCCACATCATTAATATG
1 GTCTTTAATTATGTCATAGTTTCAACATCATTAATATG
32413272 TGTTCTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.12, T:0.44
Consensus pattern (39 bp):
GTCTTTAATTATGTCATAGTTTCAACATCATTAATATGA
Found at i:32413566 original size:13 final size:13
Alignment explanation
Indices: 32413550--32413584 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
32413540 ATTTAAGTGT
32413550 GTTTATTAATTAA
1 GTTTATTAATTAA
*
32413563 GTTTAATAATTAA
1 GTTTATTAATTAA
*
32413576 GCTTATTAA
1 GTTTATTAA
32413585 GTTGTTTTGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.49
Consensus pattern (13 bp):
GTTTATTAATTAA
Found at i:32418057 original size:23 final size:24
Alignment explanation
Indices: 32418027--32418072 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
32418017 AGAACTTTTA
32418027 ATCAAGAA-GCTCACAAAGAGCCT
1 ATCAAGAATGCTCACAAAGAGCCT
32418050 ATCAAGAATGCTCACAAAGAGCC
1 ATCAAGAATGCTCACAAAGAGCC
32418073 ATGTAACAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.13
Consensus pattern (24 bp):
ATCAAGAATGCTCACAAAGAGCCT
Found at i:32418292 original size:25 final size:23
Alignment explanation
Indices: 32418247--32418306 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 23
32418237 TACTACCGAT
32418247 CAGGATGCTCACAGGAACTATATAA
1 CAGGATGCTCACAGGAAC--TATAA
* *
32418272 CAGGATGCTCGAGAGG-GCTATAA
1 CAGGATGCTC-ACAGGAACTATAA
32418295 CAGGATTGCTCA
1 CAGGA-TGCTCA
32418307 TCCAAGCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 11 0.35
24 5 0.16
25 11 0.35
26 4 0.13
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (23 bp):
CAGGATGCTCACAGGAACTATAA
Found at i:32418784 original size:17 final size:17
Alignment explanation
Indices: 32418718--32418787 Score: 54
Period size: 17 Copynumber: 3.9 Consensus size: 17
32418708 AAATGCTGAT
*
32418718 ATTTTCTTTATTTTATT
1 ATTTTCTTTATTTTATC
32418735 ATTTATCATATTTATTTT-TC
1 ATTT-TC---TTTATTTTATC
**
32418755 ATCTTTC-CAATTTTATC
1 AT-TTTCTTTATTTTATC
32418772 ATTTTCTTTATTTTAT
1 ATTTTCTTTATTTTAT
32418788 TTTCCATGGA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
16 9 0.22
17 15 0.37
18 2 0.05
20 5 0.12
21 10 0.24
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTCTTTATTTTATC
Found at i:32419474 original size:18 final size:18
Alignment explanation
Indices: 32419437--32419474 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
32419427 TAAATGGTGA
32419437 ATTTAAAGTATTAGTTGTT
1 ATTTAAAGTATTA-TTGTT
32419456 ATTTAAAAGTATT-TTGTT
1 ATTT-AAAGTATTATTGTT
32419474 A
1 A
32419475 AGTGATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 4 0.22
20 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (18 bp):
ATTTAAAGTATTATTGTT
Found at i:32420083 original size:40 final size:40
Alignment explanation
Indices: 32420034--32420163 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
32420024 AACATCCCTA
* ** *
32420034 TTTGTACTTCGGTACCCCTGTTTGCATATC-AGTGCCTCTG
1 TTTGCACTTCGGTACCCCTGAATGCACATCTA-TGCCTCTG
*
32420074 TTTGCACTTCGGTACCTCTGAATGCACATCTATGCCTCTG
1 TTTGCACTTCGGTACCCCTGAATGCACATCTATGCCTCTG
** * * * * * * *
32420114 TTTGCACTTTAGTGCCCCTAAATGTACATTTGTGCCCCCG
1 TTTGCACTTCGGTACCCCTGAATGCACATCTATGCCTCTG
32420154 TTTGCACTTC
1 TTTGCACTTC
32420164 TATCCCCTGA
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 72 0.99
41 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.18, T:0.38
Consensus pattern (40 bp):
TTTGCACTTCGGTACCCCTGAATGCACATCTATGCCTCTG
Found at i:32420129 original size:20 final size:20
Alignment explanation
Indices: 32420051--32420129 Score: 72
Period size: 20 Copynumber: 4.0 Consensus size: 20
32420041 TTCGGTACCC
32420051 CTGTTTGCA-TATCAGTGCCT
1 CTGTTTGCACT-TCAGTGCCT
* *
32420071 CTGTTTGCACTTCGGTACCT
1 CTGTTTGCACTTCAGTGCCT
** *
32420091 CTGAATGCACATCTA-TGCCT
1 CTGTTTGCACTTC-AGTGCCT
*
32420111 CTGTTTGCACTTTAGTGCC
1 CTGTTTGCACTTCAGTGCC
32420130 CCTAAATGTA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
19 1 0.02
20 43 0.96
21 1 0.02
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.38
Consensus pattern (20 bp):
CTGTTTGCACTTCAGTGCCT
Found at i:32420207 original size:20 final size:20
Alignment explanation
Indices: 32420167--32420212 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
32420157 GCACTTCTAT
32420167 CCCCTGATCGCACATTCGTG
1 CCCCTGATCGCACATTCGTG
* * * *
32420187 CTCCTGATTGCACTTTGGTG
1 CCCCTGATCGCACATTCGTG
32420207 CCCCTG
1 CCCCTG
32420213 TTATGCATCT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.37, G:0.22, T:0.30
Consensus pattern (20 bp):
CCCCTGATCGCACATTCGTG
Found at i:32423948 original size:27 final size:27
Alignment explanation
Indices: 32423918--32424008 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
32423908 GGGCATAATC
*
32423918 GTCATTTTACCATACAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
* *
32423945 GTCATTTTACCCTACAGGGGCATT-CG
1 GTCATTTTACCATACAGGGGTATTACG
* * * *
32423971 ATCATTTTCCCTTATAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
32423998 GTCATTTTACC
1 GTCATTTTACC
32424009 TATTTTGGGG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 20 0.38
27 33 0.62
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:32427745 original size:28 final size:28
Alignment explanation
Indices: 32427700--32427754 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
32427690 CAGTACAATC
* **
32427700 TGAGCCTTAGCCTTATACAATAACAGTG
1 TGAGCCTAAGCCCAATACAATAACAGTG
*
32427728 TGAGCCTAAGCCCAATACAATATCAGT
1 TGAGCCTAAGCCCAATACAATAACAGT
32427755 ACAGTGTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (28 bp):
TGAGCCTAAGCCCAATACAATAACAGTG
Found at i:32428156 original size:27 final size:27
Alignment explanation
Indices: 32428108--32428196 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
32428098 CATAATCGTC
* * * *
32428108 ATTTTATCGTACACGGGTATTACGGTT
1 ATTTTACCCTACAAGGGCATTACGGTT
* * * *
32428135 ATTTTACCCTATAGGGGCATTACAGTC
1 ATTTTACCCTACAAGGGCATTACGGTT
* *
32428162 ATTTTATCCTACAAGGGTATTACGGTT
1 ATTTTACCCTACAAGGGCATTACGGTT
32428189 ATTTTACC
1 ATTTTACC
32428197 TATTTTGGGG
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACCCTACAAGGGCATTACGGTT
Found at i:32428448 original size:17 final size:18
Alignment explanation
Indices: 32428426--32428460 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
32428416 AATATGTGTG
*
32428426 GGGCCCATAA-GCCCATT
1 GGGCCCACAAGGCCCATT
32428443 GGGCCCACAAGGCCCATT
1 GGGCCCACAAGGCCCATT
32428461 TAGGCCTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.23, C:0.37, G:0.26, T:0.14
Consensus pattern (18 bp):
GGGCCCACAAGGCCCATT
Found at i:32430537 original size:40 final size:40
Alignment explanation
Indices: 32430491--32430715 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
32430481 CTTGCGCAAG
* * *
32430491 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
32430531 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32430571 GCCTTCGGGTTTTAGCCCAGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
32430611 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
32430651 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
32430692 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
32430716 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:32430586 original size:80 final size:80
Alignment explanation
Indices: 32430455--32430715 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
32430445 CTCAAGTAAT
* * * * * * * *
32430455 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
32430518 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
32430533 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCAGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
32430597 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
32430613 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
32430678 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
32430694 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
32430716 CATTCGAATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 33 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:32432717 original size:20 final size:20
Alignment explanation
Indices: 32432679--32432719 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32432669 CCAAAAAGTA
** *
32432679 GGGAAAAACTGAAAGAAGAT
1 GGGAAAAACCAAAACAAGAT
32432699 GGGAAAAACCAAAACAAGAT
1 GGGAAAAACCAAAACAAGAT
32432719 G
1 G
32432720 AAGAAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.10, G:0.27, T:0.07
Consensus pattern (20 bp):
GGGAAAAACCAAAACAAGAT
Found at i:32448241 original size:139 final size:138
Alignment explanation
Indices: 32448069--32448351 Score: 532
Period size: 139 Copynumber: 2.1 Consensus size: 138
32448059 AGACAAAGGA
32448069 GATGG-CTAGAATTAATTAAGGATTATGATCTGAGTATCGACTATCACCCGGGAAAGGCGAATGT
1 GATGGTCTAGAATTAATTAAGGATTATGATCTGAGTATCGACTATCACCCGGGAAAGGCGAATGT
*
32448133 GGTCACCGATGCATTGAGTAGAAAATCCCTGTATACTATGAGAGCCATGGATACTCGTTTGACAT
66 GGTCACCAATGCATTGAGTAGAAAATCCCTGTATACTATGAGAGCCATGGATACTCGTTTGACAT
32448198 TGCTTGAT
131 TGCTTGAT
32448206 GATGGTCTAGTAATTAATTAAGGATTATGATCTGAGTATCGACTATCACCCGGGAAAGGCGAATG
1 GATGGTCTAG-AATTAATTAAGGATTATGATCTGAGTATCGACTATCACCCGGGAAAGGCGAATG
*
32448271 TGGTCGCCAATGCATTGAGTAGAAAATCCCTGTATACTATGAGAGCCATGGATACTCGTTTGACA
65 TGGTCACCAATGCATTGAGTAGAAAATCCCTGTATACTATGAGAGCCATGGATACTCGTTTGACA
32448336 TTGCTTGAT
130 TTGCTTGAT
32448345 GATGGTC
1 GATGGTC
32448352 CAGCTCGGCC
Statistics
Matches: 142, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
137 5 0.04
138 4 0.03
139 133 0.94
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (138 bp):
GATGGTCTAGAATTAATTAAGGATTATGATCTGAGTATCGACTATCACCCGGGAAAGGCGAATGT
GGTCACCAATGCATTGAGTAGAAAATCCCTGTATACTATGAGAGCCATGGATACTCGTTTGACAT
TGCTTGAT
Found at i:32450145 original size:29 final size:29
Alignment explanation
Indices: 32450112--32450185 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
32450102 GTGACGAGAT
32450112 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
32450141 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
32450170 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
32450186 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:32450201 original size:29 final size:29
Alignment explanation
Indices: 32450169--32450244 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
32450159 CTGGAAATAT
* *
32450169 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
32450198 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
32450227 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
32450245 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:32450212 original size:58 final size:58
Alignment explanation
Indices: 32450112--32450244 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
32450102 GTGACGAGAT
* * * * * *
32450112 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
32450170 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
32450228 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
32450245 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:32454161 original size:28 final size:28
Alignment explanation
Indices: 32454121--32454199 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
32454111 GCAATCAAAT
* * *
32454121 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
32454149 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
32454177 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
32454200 CAAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:32454513 original size:40 final size:39
Alignment explanation
Indices: 32454415--32454518 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 39
32454405 GGGCTTCAAG
* *
32454415 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAAACTTAAA
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAAACTTAAA
* *** ****
32454455 GCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAAACTT-AAA
32454495 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
32454519 TTGATAAAAG
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
39 9 0.18
40 40 0.82
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAAACTTAAA
Found at i:32468051 original size:40 final size:39
Alignment explanation
Indices: 32468007--32468214 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 39
32467997 TCGAATACAA
*
32468007 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
32468047 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
32468087 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
32468127 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
* ** * * *
32468167 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
32468207 CCGGATAT
1 CCGGATAT
32468215 CATTCAATTG
Statistics
Matches: 139, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 4 0.03
40 132 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:32468147 original size:80 final size:80
Alignment explanation
Indices: 32468007--32468213 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 80
32467997 TCGAATACAA
* * *
32468007 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
32468071 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
32468087 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
32468151 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
* ** * ** * *
32468167 CCGGGTATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
32468214 TCATTCAATT
Statistics
Matches: 106, Mismatches: 19, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 101 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:32477998 original size:46 final size:46
Alignment explanation
Indices: 32477940--32478068 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
32477930 TGTAACCCGC
* * * * *
32477940 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32477986 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32478032 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32478069 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32478087 original size:46 final size:45
Alignment explanation
Indices: 32477948--32478087 Score: 131
Period size: 46 Copynumber: 3.0 Consensus size: 45
32477938 GCCCATAAGC
* * ** * *
32477948 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
32477994 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
32478040 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
32478086 GA
1 GA
32478088 CATGTCACTT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
46 78 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:32484820 original size:55 final size:53
Alignment explanation
Indices: 32484744--32484952 Score: 213
Period size: 55 Copynumber: 3.9 Consensus size: 53
32484734 ATTAGGGTTT
* * *
32484744 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTTTTAAGTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTTTAAGAC
* * * *
32484799 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTT-T-TAA-GAC
* * * ** *
32484855 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTTAAGAC
* * * *
32484907 AAGGATACCATGTAAGGCCATGTCGAGACATGGCAATGGTAAGTTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTT
32484953 CAAAAGGATA
Statistics
Matches: 125, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
52 5 0.04
53 40 0.32
54 7 0.06
55 68 0.54
56 5 0.04
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTTTAAGAC
Found at i:32484950 original size:108 final size:110
Alignment explanation
Indices: 32484751--32484953 Score: 302
Period size: 108 Copynumber: 1.9 Consensus size: 110
32484741 TTTAAGGATA
** * *
32484751 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTTTTAAGTCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
*
32484816 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGAAAAGGTC
** *
32484861 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
* *
32484924 CCATGTCGAGACATGGCAATGGTAAGTTTC
66 CCATGTCAAGACATGGCAATGATAAGTTTC
32484954 AAAAGGATAC
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
108 50 0.60
109 6 0.07
110 27 0.33
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGCAAGGTTCATAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGAAAAGGTC
Found at i:32485204 original size:16 final size:16
Alignment explanation
Indices: 32485183--32485213 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32485173 ATAAGTTTGA
32485183 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32485199 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32485214 ACTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32489277 original size:2 final size:2
Alignment explanation
Indices: 32489270--32489295 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
32489260 CGGCTCTAGC
32489270 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
32489296 GTTTGCGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32490098 original size:40 final size:40
Alignment explanation
Indices: 32490001--32490192 Score: 215
Period size: 40 Copynumber: 4.8 Consensus size: 40
32489991 CGAATGGTAT
* * * * * *
32490001 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
32490042 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
32490082 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACC-AAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* ** *
32490121 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
32490161 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
32490193 CGCTATATCC
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 35 0.27
40 70 0.54
41 24 0.19
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:32490145 original size:79 final size:80
Alignment explanation
Indices: 32490001--32490192 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 80
32489991 CGAATGGTAT
* * *
32490001 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGC-GAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATTT
*
32490066 GTGCGAGTTACCAAAA
65 GTGCGAGCTACCAAAA
* * * * *
32490082 TCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA-CCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATTTG
** *
32490146 TGCGAGCTATTATAA
66 TGCGAGCTACCAAAA
* *
32490161 CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGT
32490193 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 61 0.65
80 8 0.09
81 25 0.27
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCTTTTGTGCGAGTGACCAAATCCGGGTCAAGTCCCGAAGGCATTTG
TGCGAGCTACCAAAA
Found at i:32497959 original size:46 final size:44
Alignment explanation
Indices: 32497855--32497962 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
32497845 TGTCTTTGAC
** * * *
32497855 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
32497899 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
32497945 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
32497963 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:32504886 original size:46 final size:44
Alignment explanation
Indices: 32504782--32504889 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
32504772 TGTCTTTGAC
** * * *
32504782 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
32504826 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
32504872 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
32504890 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:32507199 original size:40 final size:40
Alignment explanation
Indices: 32507102--32507294 Score: 206
Period size: 40 Copynumber: 4.8 Consensus size: 40
32507092 CGAATGGTAT
* * * * * *
32507102 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* * *
32507143 TCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
32507183 CCGGGTTAAGTCCCGAAGGCATTTGTTCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* ** *
32507223 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * *
32507263 CCGGGCTATGTCCTGAAGGCTTTTGAGCGAGT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
32507295 CGCTATATCG
Statistics
Matches: 128, Mismatches: 24, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
40 105 0.82
41 23 0.18
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:32513016 original size:53 final size:54
Alignment explanation
Indices: 32512820--32513034 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
32512810 ATTACGGTTT
* * *
32512820 AAGGATACCATGTAAGACCATG-CAAGGCATGGAAATTGGTAAGGTTTC-TAAGTC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-GTTTCATAAGGC
* * * *
32512874 AAGGATATCATGAAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGGA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-ATAA-GGC
* * * * *
32512930 AAGG-TCCCATGTAAGACCATGCCAAGGCGTGGCATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
32512982 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGG
32513035 ATACCACGTA
Statistics
Matches: 131, Mismatches: 24, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
52 6 0.05
53 40 0.31
54 38 0.29
55 42 0.32
56 5 0.04
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:32513025 original size:108 final size:109
Alignment explanation
Indices: 32512827--32513028 Score: 284
Period size: 108 Copynumber: 1.9 Consensus size: 109
32512817 TTTAAGGATA
* *
32512827 CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGTCAAGGATATCATGAAAGAC
1 CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGAC
*
32512892 CATGTCAAGACATGGCATTGATAAGTTTCTATAAGGGAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTTCTATAAGGGAAAGGTC
* * * *
32512936 CCATGTAAGACCATGCCAAGGCGTGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATG-CAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGAAAG
* *
32512998 ACCATGTCGAGACATGGCAATGGTAAGTTTC
64 ACCATGTCAAGACATGGCAATGATAAGTTTC
32513029 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 22 0.27
110 9 0.11
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGAC
CATGTCAAGACATGGCAATGATAAGTTTCTATAAGGGAAAGGTC
Found at i:32513287 original size:16 final size:16
Alignment explanation
Indices: 32513266--32513296 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32513256 ATAAATTTTA
32513266 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
32513282 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
32513297 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:32514436 original size:33 final size:34
Alignment explanation
Indices: 32514391--32514457 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
32514381 ACAATGCTTG
*
32514391 TAGTAACAGTCTGGGCTAGAGCCCTATTCAGTAA
1 TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
**
32514425 TAGTAA-AGTCTGGGCTTTAGCCCTATACAGTAA
1 TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
32514458 CGATGTGGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 24 0.80
34 6 0.20
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (34 bp):
TAGTAACAGTCTGGGCTAGAGCCCTATACAGTAA
Found at i:32532283 original size:249 final size:252
Alignment explanation
Indices: 32531834--32532342 Score: 826
Period size: 249 Copynumber: 2.0 Consensus size: 252
32531824 GGATTACCTG
*
32531834 TACAGTTGAAAGAAAGGATGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTA
1 TACAGTTAAAAGAAAGGATGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTA
*
32531899 AACAATGTTTGCAGTGATAATTTGGGCCAGAGCCCTATTCAATAATAGTAAAGTCTGGGCTTTAG
66 AACAATGTTTGC----A-AA-TT--GCCAGAGCCCTATTCAATAACAGTAAAGTCTGGGCTTTAG
* * *
32531964 CCTTATACAGTAATGGTGTGGGCCGAAGCCCAATTCAGTATCAAAATAGTGCAGTCGTGTAACCC
123 CCCTATACAGTAATGGTGTGGGCCGAAGCCCAATTCAATATCAAAATAGTGCAGTCATGTAACCC
32532029 ACCCCAATTCAACCAGCACAACACCCGTACCAACCAACACACCATGTGGGGATTAAATTGACCCA
188 ACCCCAATTCAACCAGCACAACACCCGTACCAACCAACACACCATGTGGGGATTAAATTGACCCA
*
32532094 TACAGTTAAAAGAAAGGGTGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTA
1 TACAGTTAAAAGAAAGGATGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTA
* *
32532159 AACAATGTTTGC-AA-T-CCAGAGCCCTATTCAGTAACAGTAAAGTTTGGGCTTTAGCCCTATAC
66 AACAATGTTTGCAAATTGCCAGAGCCCTATTCAATAACAGTAAAGTCTGGGCTTTAGCCCTATAC
*
32532221 AGTAATGGTGTGGGCCGAAGCCCAATTCAATATCAGAATAGTGCAGTCATGTAACCCACCCCAAT
131 AGTAATGGTGTGGGCCGAAGCCCAATTCAATATCAAAATAGTGCAGTCATGTAACCCACCCCAAT
* *
32532286 TCAACCAGCACACCACCCGTATCAACCAACACACCATGTGGGGATTAAATTGACCCA
196 TCAACCAGCACAACACCCGTACCAACCAACACACCATGTGGGGATTAAATTGACCCA
32532343 CCCAGCCAAC
Statistics
Matches: 238, Mismatches: 11, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
249 160 0.67
252 1 0.00
254 2 0.01
260 75 0.32
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (252 bp):
TACAGTTAAAAGAAAGGATGAGTTTACGAAAACTCAATGTGTAATCCCCTATCAGTCGAACAGTA
AACAATGTTTGCAAATTGCCAGAGCCCTATTCAATAACAGTAAAGTCTGGGCTTTAGCCCTATAC
AGTAATGGTGTGGGCCGAAGCCCAATTCAATATCAAAATAGTGCAGTCATGTAACCCACCCCAAT
TCAACCAGCACAACACCCGTACCAACCAACACACCATGTGGGGATTAAATTGACCCA
Found at i:32535199 original size:55 final size:54
Alignment explanation
Indices: 32535078--32535258 Score: 204
Period size: 55 Copynumber: 3.4 Consensus size: 54
32535068 GAACTTATGT
* * *
32535078 CTTGACATGGTCTTACGTGGTATCC-TTGCCTTAT-GAACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTA-CCTTTGCCTTATAGAACTTATCAATGCCATGC
* * * *
32535131 CTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAGTGCCATGT
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAG-AACTTATCAATGCCATGC
* ** * *
32535186 CTTGACATGGTCTTACATGATTTCTTTGCCTTATAGAACTTATCAACGTCATGC
1 CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTTATCAATGCCATGC
* *
32535240 CTTGGCATGCTCTTACATG
1 CTTGACATGGTCTTACATG
32535259 ATATCCTTAT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
52 2 0.02
53 28 0.26
54 32 0.30
55 45 0.42
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTACCTTTGCCTTATAGAACTTATCAATGCCATGC
Found at i:32537297 original size:23 final size:23
Alignment explanation
Indices: 32537267--32537310 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
32537257 CGGCACCACC
32537267 AAAAGAAAGGAGAAATTCCCCCT
1 AAAAGAAAGGAGAAATTCCCCCT
32537290 AAAAGAAAGGAGAAATTCCCC
1 AAAAGAAAGGAGAAATTCCCC
32537311 AAAGTATTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.20, G:0.18, T:0.11
Consensus pattern (23 bp):
AAAAGAAAGGAGAAATTCCCCCT
Found at i:32538187 original size:20 final size:20
Alignment explanation
Indices: 32538162--32538205 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
32538152 TCAATCAAAC
32538162 CATAATATCATAAAAAATTT
1 CATAATATCATAAAAAATTT
*
32538182 CATAATATCATCAAAAATTT
1 CATAATATCATAAAAAATTT
32538202 CATA
1 CATA
32538206 CTCATTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (20 bp):
CATAATATCATAAAAAATTT
Found at i:32546672 original size:40 final size:40
Alignment explanation
Indices: 32546602--32546858 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
32546592 AAGCCAAGTA
* * * * *
32546602 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
32546641 CCTTCGGGACATAGCCCGGATATAGTAACTCGTACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32546681 CCTTCGGGACTTAGCCCGGATATAGTAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32546721 CCTT-GGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32546760 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
32546800 CCTTCGGGACTTAGCCCAGA-ACTAGTCACTAGCACAAATT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
32546840 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32546859 TTATCATCCA
Statistics
Matches: 196, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 51 0.26
40 145 0.74
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32546735 original size:79 final size:80
Alignment explanation
Indices: 32546602--32546858 Score: 342
Period size: 79 Copynumber: 3.2 Consensus size: 80
32546592 AAGCCAAGTA
* * * * * *
32546602 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
* *
32546665 GTAACTCGTACCAATG
65 GTAACTCGCACAAATG
*
32546681 CCTTCGGGACTTAGCCCGGATATAGTAACTCTCACAAATGCCTT-GGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
32546745 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
32546760 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* * *
32546824 GTCACTAGCACAAATT
65 GTAACTCGCACAAATG
*
32546840 CCTTCGGGACCTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32546859 TTATCATCCA
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
79 89 0.56
80 70 0.44
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAAATG
Found at i:32546836 original size:119 final size:120
Alignment explanation
Indices: 32546628--32546858 Score: 340
Period size: 119 Copynumber: 1.9 Consensus size: 120
32546618 GGGTATAGCT
* * * *
32546628 ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGTACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* ** *
32546693 AGCCCGGATATAGTAACTCTCACAAATGCCTT-GGGACTTAGCCCGGATATAGTA
66 AGCCCAGATATAGTAACTAGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTA
*
32546747 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
32546812 AGCCCAGA-ACTAGTCACTAGCACAAATTCCTTCGGGACCTAGCCCGG
66 AGCCCAGATA-TAGTAACTAGCACAAATGCCTTCGGGACCTAGCCCGG
32546859 TTATCATCCA
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
118 1 0.01
119 85 0.86
120 13 0.13
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCAGATATAGTAACTAGCACAAATGCCTTCGGGACCTAGCCCGGATATAGTA
Found at i:32554819 original size:40 final size:40
Alignment explanation
Indices: 32554775--32554977 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
32554765 CAGGATTTAA
* * *
32554775 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
32554815 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
32554854 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
32554894 CCGGATATAGTAACTCGCACAAATGCCTTCGGGAGTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
32554934 CCGGA-ACTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
32554974 CCGG
1 CCGG
32554978 TTATCATCCA
Statistics
Matches: 154, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
39 40 0.26
40 114 0.74
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:32560195 original size:9 final size:10
Alignment explanation
Indices: 32560166--32560195 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
32560156 GAGTTCAACT
32560166 AAAGAGTACC
1 AAAGAGTACC
32560176 AAAGAGTACC
1 AAAGAGTACC
32560186 AAAG-GTACC
1 AAAGAGTACC
32560195 A
1 A
32560196 GACTTCGACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 6 0.30
10 14 0.70
ACGTcount: A:0.50, C:0.20, G:0.20, T:0.10
Consensus pattern (10 bp):
AAAGAGTACC
Found at i:32562288 original size:40 final size:40
Alignment explanation
Indices: 32562233--32562442 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
32562223 AACATTGGAA
32562233 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
32562273 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
32562313 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
32562353 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
32562392 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
32562433 CTATATCCGG
1 ATATATCCGG
32562443 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:32570423 original size:40 final size:40
Alignment explanation
Indices: 32570368--32570537 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
32570358 AACATTGGAA
32570368 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
32570408 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
32570448 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
32570487 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
32570528 CTATATCCGG
1 ATATATCCGG
32570538 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:32575405 original size:40 final size:39
Alignment explanation
Indices: 32575361--32575526 Score: 154
Period size: 40 Copynumber: 4.1 Consensus size: 39
32575351 CTTCGAGACA
* * *
32575361 TAGCCCGGTTATAGTAATTCACACAATTGCCTTCAGGAAT
1 TAGCCCGGTT-TAGTAACTCGCACAAATGCCTTCAGGAAT
* *
32575401 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGG-TTTAGTAACTCGCACAAATGCCTTCAGGAAT
* *
32575441 TAACCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGAAT
1 TAGCCCGG-TTTAGTAACTCGCACAAATGCCTTCAGGAAT
* * * * * *
32575481 T-GACCCGGATTTAATCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGG-TTTAGTAAC-TCGCACAAATGCCTTCAGGAAT
32575522 TAGCC
1 TAGCC
32575527 TGGACATCAT
Statistics
Matches: 103, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
40 79 0.77
41 23 0.22
42 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
TAGCCCGGTTTAGTAACTCGCACAAATGCCTTCAGGAAT
Found at i:32575472 original size:80 final size:81
Alignment explanation
Indices: 32575364--32575523 Score: 216
Period size: 80 Copynumber: 2.0 Consensus size: 81
32575354 CGAGACATAG
* * * *
32575364 CCCGGTTATAGTAATTCACACAATTGCCTTCAGGAATT-AGCCCGGATTTAGTAAC-TCGCACAA
1 CCCGGTTATAGTAACTCACACAAATGCCTTCAGGAATTGA-CCCGGATTTAATAACTTAGCACAA
*
32575427 ATGCCTTCGGGACTTAA
65 AAGCCTTCGGGACTTAA
* * * *
32575444 CCCGGTTTTGGTAACTCGCACAAATGCCTTCAGGAATTGACCCGGATTTAATCACTTAGCACAAA
1 CCCGGTTATAGTAACTCACACAAATGCCTTCAGGAATTGACCCGGATTTAATAACTTAGCACAAA
32575509 AGCCTTCGGGACTTA
66 AGCCTTCGGGACTTA
32575524 GCCTGGACAT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 46 0.67
81 23 0.33
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCACACAAATGCCTTCAGGAATTGACCCGGATTTAATAACTTAGCACAAA
AGCCTTCGGGACTTAA
Found at i:32577329 original size:50 final size:50
Alignment explanation
Indices: 32577254--32577443 Score: 299
Period size: 50 Copynumber: 3.8 Consensus size: 50
32577244 ACCATGGCAA
* *
32577254 CAAGGATAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
1 CAAGGACAAATGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
*
32577304 CAAGGACAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
1 CAAGGACAAATGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
*
32577354 CAAGGACAAATGAAAGTGATAAGTGATAGCTTTGGCTACACTTATCTGAT
1 CAAGGACAAATGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
* * * *
32577404 CAAGGACAAATGGCAAGTAAAAAGTGGTAGCTTCGGCTAC
1 CAAGGACAAAT-GAAAGTGATAAGTGATAGCTTCGGCTAC
32577444 CTGATCATCG
Statistics
Matches: 131, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
50 108 0.82
51 23 0.18
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (50 bp):
CAAGGACAAATGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGAT
Found at i:32577456 original size:15 final size:15
Alignment explanation
Indices: 32577436--32577465 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32577426 AGTGGTAGCT
32577436 TCGGCTACCTGATCA
1 TCGGCTACCTGATCA
*
32577451 TCGGCTACTTGATCA
1 TCGGCTACCTGATCA
32577466 GTGAAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (15 bp):
TCGGCTACCTGATCA
Found at i:32577489 original size:31 final size:30
Alignment explanation
Indices: 32577451--32577526 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 30
32577441 TACCTGATCA
* *
32577451 TCGGCTACTTGATCAGTGAAAAATGGTAGCT
1 TCGGCTACCTGATCAATGAAAAATGGT-GCT
*
32577482 TCGGCTACCTGATCAATGAAAAGTGGTGCT
1 TCGGCTACCTGATCAATGAAAAATGGTGCT
*
32577512 TCAGCTACCTGATCA
1 TCGGCTACCTGATCA
32577527 TCGGCTACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 17 0.41
31 24 0.59
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (30 bp):
TCGGCTACCTGATCAATGAAAAATGGTGCT
Found at i:32577547 original size:45 final size:46
Alignment explanation
Indices: 32577482--32577572 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 46
32577472 AATGGTAGCT
*
32577482 TCGGCTACCTGATCAATGAAAAGTGGT-GCTTCAG-CTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGC-TCAGACTACCTGATCA
* * *
32577527 TCGGCTACTTGATCACTGAAAAATGGTAGCTCCGACTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCAGACTACCTGATCA
32577573 GTGAATAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
45 27 0.68
46 13 0.32
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCAGACTACCTGATCA
Found at i:32577550 original size:76 final size:77
Alignment explanation
Indices: 32577423--32577589 Score: 273
Period size: 76 Copynumber: 2.2 Consensus size: 77
32577413 ATGGCAAGTA
* * * *
32577423 AAAAGTGGTAGCTTCGGCTACCTGATCATCGGCTACTTGATCAGTGAAAAATGGTAGCTTCGGCT
1 AAAAGTGGTAGCTTCAGCTACCTGATCATCGGCTACTTGATCACTGAAAAATGGTAGCTCCGACT
32577488 ACCTGATCAATG
66 ACCTGATCAATG
32577500 AAAAGTGGT-GCTTCAGCTACCTGATCATCGGCTACTTGATCACTGAAAAATGGTAGCTCCGACT
1 AAAAGTGGTAGCTTCAGCTACCTGATCATCGGCTACTTGATCACTGAAAAATGGTAGCTCCGACT
*
32577564 ACCTGATCAGTG
66 ACCTGATCAATG
*
32577576 AATAGTGGTAGCTT
1 AAAAGTGGTAGCTT
32577590 TGGCTACAAG
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
76 70 0.84
77 13 0.16
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (77 bp):
AAAAGTGGTAGCTTCAGCTACCTGATCATCGGCTACTTGATCACTGAAAAATGGTAGCTCCGACT
ACCTGATCAATG
Found at i:32586587 original size:93 final size:93
Alignment explanation
Indices: 32586475--32586645 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
32586465 GCCCATAAGT
* *
32586475 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32586540 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32586568 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32586633 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32586646 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32586642 original size:46 final size:46
Alignment explanation
Indices: 32586467--32586642 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
32586457 TGTAACCCGC
* * *
32586467 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32586513 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
32586563 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32586606 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32586643 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32590973 original size:43 final size:43
Alignment explanation
Indices: 32590925--32591071 Score: 140
Period size: 43 Copynumber: 3.4 Consensus size: 43
32590915 AGATGTCATG
*
32590925 TAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
* ** * *
32590968 TAAGACCATGTCTGAGACATC-GGTGTCGTATCT--GATTT-CTTG
1 TAAGACCATGTCTGGGACA-CAGGCCTCG-AT-TGAGATTTACGTA
* * *
32591010 TAAGCCCGTGTCTAGGACACAGGCCTCGATTGAGATTTACGTA
1 TAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
* *
32591053 TTAGACCATGTTTGGGACA
1 TAAGACCATGTCTGGGACA
32591072 TCGGCATCGC
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
40 1 0.01
41 3 0.04
42 27 0.35
43 43 0.55
44 3 0.04
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTA
Found at i:32591047 original size:42 final size:41
Alignment explanation
Indices: 32590913--32591047 Score: 114
Period size: 42 Copynumber: 3.2 Consensus size: 41
32590903 GACATCTGTC
*
32590913 TGAGATGTCATGTAAGACCGTGTCTGGGACACAGGCCTCGAT
1 TGAGATTTCATGTAAGACCGTGTCT-GGACACAGGCCTCGAT
* * * **
32590955 TGAGATTTACGTATAAGACCATGTCTGAGACATC-GGTGTCGTAT
1 TGAGATTT-CATGTAAGACCGTGTCTG-GACA-CAGGCCTCG-AT
* *
32590999 CT--GATTTCTTGTAAGCCCGTGTCTAGGACACAGGCCTCGAT
1 -TGAGATTTCATGTAAGACCGTGTCT-GGACACAGGCCTCGAT
32591040 TGAGATTT
1 TGAGATTT
32591048 ACGTATTAGA
Statistics
Matches: 72, Mismatches: 12, Indels: 18
0.71 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 3 0.04
42 35 0.49
43 29 0.40
44 3 0.04
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (41 bp):
TGAGATTTCATGTAAGACCGTGTCTGGACACAGGCCTCGAT
Found at i:32591154 original size:85 final size:85
Alignment explanation
Indices: 32590923--32591118 Score: 279
Period size: 85 Copynumber: 2.3 Consensus size: 85
32590913 TGAGATGTCA
* *
32590923 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGAGACAT
1 TGTAAGACCCTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACAT
** *
32590988 CGGTGTCGTATCTGATTTCT
66 CGGCATCGCATCTGATTTCT
* * *
32591008 TGTAAG-CCCGTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATTAGACCATGTTTGGGACA
1 TGTAAGACCC-TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACA
32591072 TCGGCATCGCATCTGATTT-T
65 TCGGCATCGCATCTGATTTCT
*
32591092 GTGTAAGACCCTGTCTGGGACAGAGGC
1 -TGTAAGACCCTGTCTGGGACACAGGC
32591119 ATTGGTATTG
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
84 3 0.03
85 92 0.94
86 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (85 bp):
TGTAAGACCCTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACAT
CGGCATCGCATCTGATTTCT
Found at i:32594160 original size:53 final size:53
Alignment explanation
Indices: 32593982--32594188 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 53
32593972 ATTAGGGTTT
* * * *
32593982 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * ** * * * *
32594036 AAGGAAATCATGTAGGACCATGTCAATACATGGCCTTGATAGACTACGACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTA-AGTTC-ATAAGGC
* * * *
32594091 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
32594144 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
32594189 TAAAAAGGAA
Statistics
Matches: 117, Mismatches: 34, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
53 45 0.38
54 36 0.31
55 36 0.31
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:32597491 original size:40 final size:40
Alignment explanation
Indices: 32597446--32597612 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
32597436 CGGAATATAA
32597446 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
32597486 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32597526 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32597566 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32597605 CCGGATAT
1 CCGGATAT
32597613 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32605493 original size:40 final size:40
Alignment explanation
Indices: 32605448--32605614 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
32605438 CGGAATATAA
32605448 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
32605488 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32605528 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
32605568 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32605607 CCGGATAT
1 CCGGATAT
32605615 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32618469 original size:25 final size:25
Alignment explanation
Indices: 32618435--32618484 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32618425 ACATAGAAAC
32618435 GAGATAAACTAATCTAAAGCTTTAG
1 GAGATAAACTAATCTAAAGCTTTAG
32618460 GAGATAAACTAATCTAAAGCTTTAG
1 GAGATAAACTAATCTAAAGCTTTAG
32618485 CTTTTCATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (25 bp):
GAGATAAACTAATCTAAAGCTTTAG
Found at i:32618530 original size:27 final size:27
Alignment explanation
Indices: 32618492--32618553 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
32618482 TAGCTTTTCA
*
32618492 TTGATCTAGATCCATACAAGGTTTATC
1 TTGATCTAGATCCATACAAGGTCTATC
32618519 TTGATCTAGATCCATACAAGGTCTATC
1 TTGATCTAGATCCATACAAGGTCTATC
32618546 TTGATCTA
1 TTGATCTA
32618554 AATAAGAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (27 bp):
TTGATCTAGATCCATACAAGGTCTATC
Found at i:32624958 original size:46 final size:46
Alignment explanation
Indices: 32624812--32624984 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
32624802 GTTTGGGCAT
*
32624812 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *** * * * *
32624857 TCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
32624902 ATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
32624949 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32624985 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 13
0.78 0.13 0.10
Matches are distributed among these distances:
44 2 0.02
45 36 0.35
46 61 0.59
47 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:32627916 original size:15 final size:15
Alignment explanation
Indices: 32627896--32627924 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32627886 GCATAGTACG
32627896 TATCTTGGATTTCTC
1 TATCTTGGATTTCTC
32627911 TATCTTGGATTTCT
1 TATCTTGGATTTCT
32627925 TTATTCGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.17, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:32630342 original size:46 final size:45
Alignment explanation
Indices: 32630292--32630465 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 45
32630282 TGTTTGGGCA
32630292 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
32630338 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
32630385 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
32630431 -CCTG-ACTCGTTGAGTTGAGTCCGAGTT-ACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32630466 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 25 0.23
46 34 0.31
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32633231 original size:18 final size:17
Alignment explanation
Indices: 32633208--32633243 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32633198 ATTGGGCTGA
32633208 AATGGGCCGTGTGGGCCC
1 AATGGG-CGTGTGGGCCC
*
32633226 AATGGGCTTGTGGGCCC
1 AATGGGCGTGTGGGCCC
32633243 A
1 A
32633244 CACAGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.14, C:0.25, G:0.42, T:0.19
Consensus pattern (17 bp):
AATGGGCGTGTGGGCCC
Found at i:32633491 original size:27 final size:27
Alignment explanation
Indices: 32633459--32633531 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
32633449 CCTTGATTTG
*
32633459 TAAAATTAACGAAATACCCCCGATTCA
1 TAAAATTAACGAAATACCCCCAATTCA
* *
32633486 TAAAATT-ACTAAAATACCCCCAATTTA
1 TAAAATTAAC-GAAATACCCCCAATTCA
* *
32633513 TAAAATCACCGAAATACCC
1 TAAAATTAACGAAATACCC
32633532 TTGTAGGGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.47, C:0.26, G:0.04, T:0.23
Consensus pattern (27 bp):
TAAAATTAACGAAATACCCCCAATTCA
Found at i:32633569 original size:26 final size:27
Alignment explanation
Indices: 32633513--32633571 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
32633503 CCCCAATTTA
32633513 TAAAATCACCGAAATACCCTTGTAGGG
1 TAAAATCACCGAAATACCCTTGTAGGG
* *
32633540 TAAAATTATCGAAATACCC-TGTAGGG
1 TAAAATCACCGAAATACCCTTGTAGGG
32633566 TAAAAT
1 TAAAAT
32633572 GACTGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (27 bp):
TAAAATCACCGAAATACCCTTGTAGGG
Found at i:32634076 original size:27 final size:27
Alignment explanation
Indices: 32633989--32634078 Score: 67
Period size: 27 Copynumber: 3.3 Consensus size: 27
32633979 GCTTCATGCT
*
32633989 AATCGTATTTACC-AGTGGCTATGTGCC
1 AATCATATTTACCGA-TGGCTATGTGCC
* ** * * *
32634016 TATCATATTTATTGATGACTCTGTG-T
1 AATCATATTTACCGATGGCTATGTGCC
* *
32634042 AGACCATATTTACCGATGGCTGTGTGCC
1 A-ATCATATTTACCGATGGCTATGTGCC
32634070 AATCATATT
1 AATCATATT
32634079 ACAGCTACTG
Statistics
Matches: 45, Mismatches: 15, Indels: 6
0.68 0.23 0.09
Matches are distributed among these distances:
27 43 0.96
28 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
AATCATATTTACCGATGGCTATGTGCC
Found at i:32634101 original size:31 final size:31
Alignment explanation
Indices: 32634056--32634127 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
32634046 CATATTTACC
*
32634056 GATGGCTGTGTGCCAATCATATTACAGCTACT
1 GATGGCT-TGTGCCAATCAAATTACAGCTACT
*
32634088 GATGGCTTGTGCCAATCAAATTACTGCTACT
1 GATGGCTTGTGCCAATCAAATTACAGCTACT
32634119 GATGG-TTGT
1 GATGGCTTGT
32634128 AAGCCGTGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 4 0.11
31 27 0.71
32 7 0.18
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (31 bp):
GATGGCTTGTGCCAATCAAATTACAGCTACT
Found at i:32641781 original size:24 final size:24
Alignment explanation
Indices: 32641729--32641894 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
32641719 GCTTTATCAT
*
32641729 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32641754 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
32641778 ATAACTGGGGCATAAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
32641801 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32641825 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32641849 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32641872 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32641895 GCACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 42 0.33
24 73 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32641830 original size:71 final size:71
Alignment explanation
Indices: 32641729--32641895 Score: 246
Period size: 71 Copynumber: 2.3 Consensus size: 71
32641719 GCTTTATCAT
* * * *
32641729 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAA
*
32641793 GCCTTTTA
64 GCCCTTTA
* *
32641801 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
32641866 CCTTTA
66 CCTTTA
32641872 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
32641896 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTAGGGCATAAGC
CCTTTA
Found at i:32641895 original size:47 final size:48
Alignment explanation
Indices: 32641729--32641894 Score: 230
Period size: 47 Copynumber: 3.5 Consensus size: 48
32641719 GCTTTATCAT
* * *
32641729 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
32641778 ATAACTGGGGCATAAG-CCTTTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
* *
32641825 ATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
32641872 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32641895 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
47 69 0.64
48 28 0.26
49 10 0.09
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:32641968 original size:20 final size:20
Alignment explanation
Indices: 32641940--32642010 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
32641930 GCATTTATGA
*
32641940 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32641960 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* *
32641980 ACATGTCATGTACATATCAT
1 ACATATCATGTGCATATCAT
32642000 ACATATCATGT
1 ACATATCATGT
32642011 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32641993 original size:11 final size:11
Alignment explanation
Indices: 32641940--32642010 Score: 64
Period size: 9 Copynumber: 7.0 Consensus size: 11
32641930 GCATTTATGA
*
32641940 ACATCTCATGT
1 ACATATCATGT
*
32641951 GCATATCA--T
1 ACATATCATGT
32641960 ACATATCATGT
1 ACATATCATGT
*
32641971 GCATATCA--T
1 ACATATCATGT
*
32641980 ACATGTCATGT
1 ACATATCATGT
32641991 ACATATCA--T
1 ACATATCATGT
32642000 ACATATCATGT
1 ACATATCATGT
32642011 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
9 24 0.51
11 23 0.49
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (11 bp):
ACATATCATGT
Found at i:32642086 original size:25 final size:24
Alignment explanation
Indices: 32642047--32642094 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
32642037 ATATATAAAC
* *
32642047 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
32642072 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
32642095 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:32643352 original size:27 final size:27
Alignment explanation
Indices: 32643332--32643644 Score: 366
Period size: 27 Copynumber: 11.6 Consensus size: 27
32643322 AGGGTAGTTT
*
32643332 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32643359 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32643386 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32643413 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32643440 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
32643466 GGTAATTATGTAAAT-TAGGGTTAAAAC
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
* *
32643493 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
32643520 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
32643547 GGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * ** *
32643574 GGTAATTTTACAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32643601 AGTAATTCTAT-AACCTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
32643628 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
32643645 GGAGTACTTT
Statistics
Matches: 249, Mismatches: 28, Indels: 18
0.84 0.09 0.06
Matches are distributed among these distances:
26 29 0.12
27 212 0.85
28 8 0.03
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:32643418 original size:81 final size:82
Alignment explanation
Indices: 32643333--32643644 Score: 413
Period size: 81 Copynumber: 3.9 Consensus size: 82
32643323 GGGTAGTTTA
* * * *
32643333 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-AAGGGTAAAACAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCTGAGGGTAAAACGGTAATTCTGT
32643397 AAATCGAGGGTAAAACG
66 AAATCGAGGGTAAAACG
* * *
32643414 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGTAAATC-G-GGGTAAAATGGTAATTATG
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCTGAGGGTAAAACGGTAATTCTG
*
32643476 TAAAT-TAGGGTTAAAACG
65 TAAATCGAGGG-TAAAACG
*
32643494 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCTGAGGGTAAAACGGTAATTCTGT
*
32643558 AAATCAAGGGTAAAACG
66 AAATCGAGGGTAAAACG
* ** * * *
32643575 GTAATTTTACAAATCAAGGGTAAAACAGTAATTCTAT-AACCTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCTGAGGGTAAAACGGTAATTCTGT
32643639 AAATCG
66 AAATCG
32643645 GGAGTACTTT
Statistics
Matches: 204, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
79 5 0.02
80 67 0.33
81 128 0.63
82 4 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (82 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCTGAGGGTAAAACGGTAATTCTGT
AAATCGAGGGTAAAACG
Found at i:32646823 original size:47 final size:48
Alignment explanation
Indices: 32646746--32646911 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
32646736 TGCTTTATCA
* *
32646746 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
32646795 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
32646842 GATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
32646888 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
32646912 GCACTTCTCC
Statistics
Matches: 108, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
46 26 0.24
47 55 0.51
48 14 0.13
49 13 0.12
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:32646826 original size:23 final size:24
Alignment explanation
Indices: 32646747--32646911 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
32646737 GCTTTATCAT
*
32646747 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32646772 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
32646796 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
32646819 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32646843 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
32646867 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32646889 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32646912 GCACTTCTCC
Statistics
Matches: 127, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
22 9 0.07
23 45 0.35
24 61 0.48
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32646982 original size:9 final size:9
Alignment explanation
Indices: 32646968--32647024 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32646958 ATCTCATGTG
32646968 CATATCATA
1 CATATCATA
*
32646977 CATATCATGTG
1 CATATCA--TA
32646988 CATATCATA
1 CATATCATA
* *
32646997 CATGTCATGTG
1 CATATCA--TA
32647008 CATATCATA
1 CATATCATA
32647017 CATATCAT
1 CATATCAT
32647025 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32646984 original size:20 final size:20
Alignment explanation
Indices: 32646956--32647026 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
32646946 GCATTTATGA
*
32646956 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32646976 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
32646996 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32647016 ACATATCATGT
1 ACATATCATGT
32647027 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32646991 original size:11 final size:11
Alignment explanation
Indices: 32646961--32647015 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32646951 TATGAACATC
32646961 TCATGTGCATA
1 TCATGTGCATA
*
32646972 TCA--TACATA
1 TCATGTGCATA
32646981 TCATGTGCATA
1 TCATGTGCATA
* *
32646992 TCA--TACATG
1 TCATGTGCATA
32647001 TCATGTGCATA
1 TCATGTGCATA
32647012 TCAT
1 TCAT
32647016 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32647105 original size:25 final size:24
Alignment explanation
Indices: 32647063--32647110 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
32647053 ATATATAAAC
* * *
32647063 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
32647088 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32647111 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:32648361 original size:27 final size:27
Alignment explanation
Indices: 32648341--32648650 Score: 373
Period size: 27 Copynumber: 11.6 Consensus size: 27
32648331 AGGGTATTTT
*
32648341 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32648368 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32648395 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
32648422 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32648449 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
32648475 GGTAATTATGTAAAT--TGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32648500 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
32648527 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
32648554 GGTAATTCTGTAAATC-AGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
32648580 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
32648607 AGTAATTCTAT-AACCTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
32648634 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
32648651 GGAGTACTTT
Statistics
Matches: 248, Mismatches: 25, Indels: 20
0.85 0.09 0.07
Matches are distributed among these distances:
25 22 0.09
26 49 0.20
27 173 0.70
28 4 0.02
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:32648603 original size:80 final size:80
Alignment explanation
Indices: 32648342--32648649 Score: 419
Period size: 80 Copynumber: 3.9 Consensus size: 80
32648332 GGGTATTTTA
* * *
32648342 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
32648407 AATCGAGGGTAAAACG
66 AATC-AGGGTAAAACG
* * * *
32648423 GTAATTCTGTAAATCGAGGGTAAAAC-GATAATTATGTAAATCG-GGGTAAAATGGTAATTATGT
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
*
32648486 AAAT-TGGGTAAAACG
65 AAATCAGGGTAAAACG
* *
32648501 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGT
32648565 AAATCAGGGTAAAACG
65 AAATCAGGGTAAAACG
** * *
32648581 GTAATTTTACAAATCGAGGGTAAAACAGTAATTCTAT-AACCTGAGGGTAAAACGGTAATTCTGT
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGT
32648645 AAATC
65 AAATC
32648650 GGGAGTACTT
Statistics
Matches: 203, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
77 1 0.00
78 47 0.23
79 25 0.12
80 92 0.45
81 38 0.19
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (80 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
AATCAGGGTAAAACG
Found at i:32651833 original size:23 final size:24
Alignment explanation
Indices: 32651754--32651920 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
32651744 GCTTTATCAT
*
32651754 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
32651779 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
32651803 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
32651826 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
32651850 ATAACTGGGGCATAAGCCCTTTTTG
1 ATAACTGGGGCATAAGCCC-TTTTA
32651875 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32651898 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32651921 GCACTTCCTC
Statistics
Matches: 129, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
23 43 0.33
24 50 0.39
25 36 0.28
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32651891 original size:72 final size:71
Alignment explanation
Indices: 32651754--32651921 Score: 266
Period size: 72 Copynumber: 2.3 Consensus size: 71
32651744 GCTTTATCAT
* *
32651754 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
32651818 GCCCTTTA
64 GCCCTTTA
* *
32651826 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTGATAACTGGGGCATAAG
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTT-ATAACTGGGGCATAAG
32651891 CCCTTTA
65 CCCTTTA
32651898 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
32651922 CACTTCCTCC
Statistics
Matches: 90, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
71 32 0.36
72 58 0.64
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTA
Found at i:32651993 original size:20 final size:20
Alignment explanation
Indices: 32651965--32652013 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
32651955 GCATTTATGA
*
32651965 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32651985 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32652005 ACATATCAT
1 ACATATCAT
32652014 TCATTATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32652095 original size:25 final size:24
Alignment explanation
Indices: 32652053--32652100 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
32652043 TATATAAAAC
* * *
32652053 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
32652078 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32652101 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:32653653 original size:40 final size:40
Alignment explanation
Indices: 32653545--32653714 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
32653535 CGGGATTTAA
* * * * *
32653545 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
32653585 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32653625 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32653665 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
32653705 CCGGATATAT
1 CCGGATATAT
32653715 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:32658721 original size:40 final size:40
Alignment explanation
Indices: 32658623--32658801 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
32658613 CAAATGATGT
* * * * *
32658623 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * * *
32658664 TCGGG-TCAATTCTCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
32658704 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
32658744 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
32658784 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
32658802 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 91 0.80
41 23 0.20
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:32658773 original size:80 final size:81
Alignment explanation
Indices: 32658623--32658801 Score: 227
Period size: 80 Copynumber: 2.2 Consensus size: 81
32658613 CAAATGATGT
* * * * *
32658623 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATTCGGGTCAATTCTCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
*
32658688 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * *
32658704 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
32658767 TGTGCGAATTACTATAA
65 TGTGCGAATTACCAAAA
*
32658784 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
32658802 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 57 0.68
81 26 0.31
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:32658836 original size:80 final size:80
Alignment explanation
Indices: 32658671--32658827 Score: 179
Period size: 80 Copynumber: 2.0 Consensus size: 80
32658661 AATTCGGGTC
* * * * * * * *
32658671 AATTCTCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGT
1 AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGT
*
32658736 TACTAAATCCGGGCT
66 CACTAAATCCGGGCT
* * * *
32658751 AATTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGACAATCGAGCTAGT
1 AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGT
* *
32658816 CGCTATATCCGG
66 CACTAAATCCGG
32658828 TTAAATTCCG
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
AATTCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGT
CACTAAATCCGGGCT
Found at i:32660529 original size:6 final size:6
Alignment explanation
Indices: 32660518--32660544 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
32660508 CGAGTCATTC
32660518 ATATGT ATATGT ATATGT ATATGT ATA
1 ATATGT ATATGT ATATGT ATATGT ATA
32660545 GTTTTCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (6 bp):
ATATGT
Found at i:32668999 original size:20 final size:20
Alignment explanation
Indices: 32668974--32669013 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32668964 TCAACAAAGC
*
32668974 ATCGCTATAAATAACGAATT
1 ATCGCTATAAACAACGAATT
*
32668994 ATCGCTGTAAACAACGAATT
1 ATCGCTATAAACAACGAATT
32669014 CTTTAACTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (20 bp):
ATCGCTATAAACAACGAATT
Found at i:32673139 original size:42 final size:41
Alignment explanation
Indices: 32673043--32673286 Score: 181
Period size: 43 Copynumber: 5.8 Consensus size: 41
32673033 AACAAGTACA
* * * *
32673043 ATGCCGACGTCCCAGACATGGTTTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAATCAATA-CG
** * *
32673086 ATGCCTCTGTCCTAGACAGGGTCTTACACGAAATCAGATACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGAAATCA-ATACG
* *
32673128 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAAT-CG
1 ATGCCGATGTCCCAGACATGGTCTTACAC-GAAA--TCAATACG
* ** *
32673171 AGGCCTG-TGTCCCAGACACAGTCTTACACAAAATCAGATACG
1 ATGCC-GATGTCCCAGACATGGTCTTACACGAAATCA-ATACG
* * *
32673213 ATGTCGATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CT
1 ATGCCGATGTCCCAGACATGGTCTTACACG-AAA--TCAATACG
* *
32673256 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGACATGGTCTTACACGA
32673287 TATCTTAGAC
Statistics
Matches: 159, Mismatches: 30, Indels: 25
0.74 0.14 0.12
Matches are distributed among these distances:
40 3 0.02
41 3 0.02
42 59 0.37
43 82 0.52
44 6 0.04
45 6 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (41 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGAAATCAATACG
Found at i:32673188 original size:85 final size:85
Alignment explanation
Indices: 32673043--32673286 Score: 341
Period size: 85 Copynumber: 2.9 Consensus size: 85
32673033 AACAAGTACA
* * * * * *
32673043 ATGCCGACGTCCCAGACATGGT-TT-TACATGTAAT-TCAATATCGATGCCTCTGTCCTAGACAG
1 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
32673105 GGTCTTACACGAAATCAGATACG
63 GGTCTTACACGAAATCAGATACG
*
32673128 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACACAGT
1 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACACGGT
*
32673193 CTTACACAAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
32673213 ATGTCGATGTCCCAGACATGGTCTTATACGTAAATCTCAATCTAGGCCTGTGTCCCAGACACGGT
1 ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACACGGT
32673278 CTTACACGA
66 CTTACACGA
32673287 TATCTTAGAC
Statistics
Matches: 143, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
85 130 0.91
86 6 0.04
87 7 0.05
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTATACATAAATCTCAATCGAGGCCTGTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:32677095 original size:40 final size:40
Alignment explanation
Indices: 32677004--32677223 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
32676994 CAAGCACAAT
* * *** * *
32677004 TGCCTTCGGGTCTTAACCC-GATTTGGTAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
32677043 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
32677083 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
32677123 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
* **
32677163 TGCCTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAA
*
32677203 TGCCTTCGGGACTTAGCCCGG
1 TGCCTTCGGGTCTTAGCCCGG
32677224 GTATCATTCA
Statistics
Matches: 168, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 18 0.11
40 149 0.89
41 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAA
Found at i:32685209 original size:40 final size:39
Alignment explanation
Indices: 32685160--32685367 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
32685150 TCTTCGGAAT
* *
32685160 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
32685199 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
32685239 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
32685279 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
32685319 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
32685359 TTAGCCCGG
1 TTAGCCCGG
32685368 GTATCATTCA
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
39 3 0.02
40 141 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:32687211 original size:40 final size:39
Alignment explanation
Indices: 32687121--32687230 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 39
32687111 GGCTGTCACA
* * *
32687121 GAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTTGTGC
1 GAGTTACTATATCCGGGCTAA-TCCCGAAGGCATTCGAGC
32687161 GAGTTACTATATCCGGGCTATATCCCGAAGGCATTCGAGC
1 GAGTTACTATATCCGGGCTA-ATCCCGAAGGCATTCGAGC
* *
32687201 GAG-TAGCTATA-CCCGGTTAAATCCCGAAGG
1 GAGTTA-CTATATCCGGGCT-AATCCCGAAGG
32687231 TACTTGGCTT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
39 17 0.27
40 44 0.71
41 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (39 bp):
GAGTTACTATATCCGGGCTAATCCCGAAGGCATTCGAGC
Found at i:32692315 original size:43 final size:43
Alignment explanation
Indices: 32692157--32692322 Score: 181
Period size: 43 Copynumber: 3.9 Consensus size: 43
32692147 CGTACAATGT
* * * * *
32692157 CAACATCCCAAACGTGGTCTTACATGTAACCTCATATCGATGT
1 CAACATCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
* * ** * * *
32692200 C-ACTGTCTCAGACAAGATCTTACTCGTAAACACATATCGATGC
1 CAAC-ATCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
*
32692243 CAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
1 CAACATCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
* *
32692286 CAACATCCCAGACTTGGTCTTACACGTAATCTCATAT
1 CAACATCCCAGACGTGGTCTTACACGTAATCACATAT
32692323 TGATATCACA
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 2 0.02
43 97 0.96
44 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (43 bp):
CAACATCCCAGACGTGGTCTTACACGTAATCACATATCGATGC
Found at i:32694013 original size:19 final size:19
Alignment explanation
Indices: 32693977--32694015 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32693967 CCTAAAATTC
32693977 TCACTATTTCACACACTTA
1 TCACTATTTCACACACTTA
*
32693996 TCACTTATTTTACA-ACTTA
1 TCAC-TATTTCACACACTTA
32694015 T
1 T
32694016 GCAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.44
Consensus pattern (19 bp):
TCACTATTTCACACACTTA
Found at i:32695172 original size:26 final size:26
Alignment explanation
Indices: 32695143--32695195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32695133 CGGGTAGACA
32695143 CATGGGCATGTGTCTAGGCCGTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
* *
32695169 CATGGGCATGTGTCTCGGCCTTGTGT
1 CATGGGCATGTGTCTAGGCCGTGTGT
32695195 C
1 C
32695196 CCCTGCACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.09, C:0.23, G:0.36, T:0.32
Consensus pattern (26 bp):
CATGGGCATGTGTCTAGGCCGTGTGT
Found at i:32697671 original size:9 final size:9
Alignment explanation
Indices: 32697657--32697689 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
32697647 GTTAAACGAA
32697657 TCGAGTTAT
1 TCGAGTTAT
*
32697666 TCGAGTTAA
1 TCGAGTTAT
32697675 TCGAGTTAT
1 TCGAGTTAT
32697684 TCGAGT
1 TCGAGT
32697690 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:32697678 original size:18 final size:18
Alignment explanation
Indices: 32697655--32697689 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
32697645 GAGTTAAACG
32697655 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
32697673 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
32697690 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Done.