Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 107 of 318
Found at i:32697757 original size:9 final size:9
Alignment explanation
Indices: 32697740--32697776 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32697730 TAAGTTTTCG
32697740 AATTCGAAT
1 AATTCGAAT
*
32697749 AACTCGAAT
1 AATTCGAAT
32697758 AATTCGAAT
1 AATTCGAAT
32697767 AATTCGAAT
1 AATTCGAAT
32697776 A
1 A
32697777 TTAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:32700660 original size:39 final size:41
Alignment explanation
Indices: 32700605--32700687 Score: 143
Period size: 40 Copynumber: 2.1 Consensus size: 41
32700595 ATTTTCCCAG
32700605 GCACTTTTAATTAATCCT-AAAAAATAAAATGTTCCAGCAT
1 GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
*
32700645 GCAC-TTTAATTAATCCTAAAAAAATAAAATGTTTCAGCAT
1 GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
32700685 GCA
1 GCA
32700688 AACATAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 13 0.32
40 28 0.68
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.31
Consensus pattern (41 bp):
GCACTTTTAATTAATCCTAAAAAAATAAAATGTTCCAGCAT
Found at i:32710519 original size:28 final size:28
Alignment explanation
Indices: 32710458--32710555 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
32710448 TCACAAATTG
** * *
32710458 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
32710487 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
32710515 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
32710543 GCACTAAGTGTGC
1 GCACTAAGTGTGC
32710556 GGGCTTACTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:32718189 original size:28 final size:28
Alignment explanation
Indices: 32718128--32718225 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
32718118 TCACAAATTG
** * *
32718128 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
32718157 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
32718185 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
32718213 GCACTAAGTGTGC
1 GCACTAAGTGTGC
32718226 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:32720088 original size:39 final size:39
Alignment explanation
Indices: 32720007--32720116 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
32719997 TCGAATGATG
* *
32720007 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTGACCAAA
* *
32720046 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGT-TCCAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTGACCAAA
*
32720085 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAG
32720117 CTATTATAAC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.02
39 42 0.68
40 12 0.19
41 7 0.11
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:32720141 original size:40 final size:39
Alignment explanation
Indices: 32720007--32720157 Score: 132
Period size: 39 Copynumber: 3.8 Consensus size: 39
32719997 TCGAATGATG
* * *
32720007 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-TCCAAA
*
32720046 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTCCAAA
* *
32720085 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTAT-TATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-T-TCCA-AA
* * *
32720126 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
32720158 CGCTATATCC
Statistics
Matches: 95, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
38 1 0.01
39 43 0.45
40 41 0.43
41 10 0.11
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCAAA
Found at i:32728111 original size:40 final size:40
Alignment explanation
Indices: 32728028--32728180 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
32728018 TCGAATGATG
* *
32728028 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
32728068 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
32728108 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
32728149 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
32728181 CGCTATATTC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:32733031 original size:28 final size:27
Alignment explanation
Indices: 32733001--32733133 Score: 160
Period size: 28 Copynumber: 4.8 Consensus size: 27
32732991 TCAGAATTTG
* *
32733001 CCACAAAGGC-ATCCTTTTTCAAAGTTCG
1 CCACAAAGGCTATTC-TTTT-AAAGTTCA
32733029 CCACAAAGGCTATTCTTTTAAGAGTTCA
1 CCACAAAGGCTATTCTTTTAA-AGTTCA
*
32733057 CCACAAAAGCTATTCTTTTTAAAGTTCA
1 CCACAAAGGCTATTC-TTTTAAAGTTCA
*
32733085 CCACAAAGGCTATTCTTTTCATAGTTCA
1 CCACAAAGGCTATTCTTTT-AAAGTTCA
* *
32733113 CCACAAAGGATATTTTTTTAA
1 CCACAAAGGCTATTCTTTTAA
32733134 TGTCGTGTTT
Statistics
Matches: 93, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 7 0.08
28 77 0.83
29 9 0.10
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (27 bp):
CCACAAAGGCTATTCTTTTAAAGTTCA
Found at i:32733063 original size:56 final size:56
Alignment explanation
Indices: 32733001--32733121 Score: 181
Period size: 56 Copynumber: 2.2 Consensus size: 56
32732991 TCAGAATTTG
*
32733001 CCACAAAGGC-ATCCTTTTTCAAAGTTCGCCACAAAGGCTATTCTTTTAAGAGTTCA
1 CCACAAAGGCTATCCTTTTT-AAAGTTCACCACAAAGGCTATTCTTTTAAGAGTTCA
* * * *
32733057 CCACAAAAGCTATTCTTTTTAAAGTTCACCACAAAGGCTATTCTTTTCATAGTTCA
1 CCACAAAGGCTATCCTTTTTAAAGTTCACCACAAAGGCTATTCTTTTAAGAGTTCA
32733113 CCACAAAGG
1 CCACAAAGG
32733122 ATATTTTTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
56 50 0.86
57 8 0.14
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (56 bp):
CCACAAAGGCTATCCTTTTTAAAGTTCACCACAAAGGCTATTCTTTTAAGAGTTCA
Found at i:32736580 original size:13 final size:13
Alignment explanation
Indices: 32736557--32736588 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32736547 TTTGTAACAC
32736557 TTGAA-ATTATAT
1 TTGAATATTATAT
32736569 TTGAATATTATAT
1 TTGAATATTATAT
32736582 TTGAATA
1 TTGAATA
32736589 AGATTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (13 bp):
TTGAATATTATAT
Found at i:32737691 original size:33 final size:33
Alignment explanation
Indices: 32737651--32737722 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
32737641 CAAAGTAGTC
*
32737651 AAAGATTACATTGTGTTAAATTAAGATTTGATA
1 AAAGATTACATTGAGTTAAATTAAGATTTGATA
* *
32737684 AAAGATTATATTGAGTTAAATTAAGCTTTGATA
1 AAAGATTACATTGAGTTAAATTAAGATTTGATA
32737717 AAAGAT
1 AAAGAT
32737723 ATTGATATAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (33 bp):
AAAGATTACATTGAGTTAAATTAAGATTTGATA
Found at i:32739036 original size:30 final size:31
Alignment explanation
Indices: 32738996--32739054 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
32738986 TATAAAATAA
32738996 TTAAGCTATAAAAATTATTA-A-TAATATTAT
1 TTAAGCTATAAAAATT-TTATATTAATATTAT
* *
32739026 TTAAGTTATAATAATTTTATATTAATATT
1 TTAAGCTATAAAAATTTTATATTAATATT
32739055 GAAACCATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 3 0.12
30 15 0.60
31 7 0.28
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (31 bp):
TTAAGCTATAAAAATTTTATATTAATATTAT
Found at i:32745330 original size:18 final size:18
Alignment explanation
Indices: 32745303--32745337 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32745293 ATTTGTCTAT
32745303 ATTTCTATAA-TTTTATA
1 ATTTCTATAAGTTTTATA
32745320 ATTTACTATAAGTTTTAT
1 ATTT-CTATAAGTTTTAT
32745338 TTTTTTGAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTCTATAAGTTTTATA
Found at i:32746954 original size:29 final size:30
Alignment explanation
Indices: 32746911--32746968 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
32746901 TTAAAAATGT
*
32746911 TGATTTTTATAAAAATTTATTGGATTAGGC
1 TGATTTTTATAAAAATTTATGGGATTAGGC
*
32746941 TGATTTTT-TGAAAATTTATGGGATTAGG
1 TGATTTTTATAAAAATTTATGGGATTAGG
32746969 TCGAAAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (30 bp):
TGATTTTTATAAAAATTTATGGGATTAGGC
Found at i:32748254 original size:25 final size:25
Alignment explanation
Indices: 32748226--32748276 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32748216 AGTAAGTATG
32748226 ATAGCTTGTAGGATACATTTATGTC
1 ATAGCTTGTAGGATACATTTATGTC
32748251 ATAGCTTGTAGGATACATTTATGTC
1 ATAGCTTGTAGGATACATTTATGTC
32748276 A
1 A
32748277 CTCGACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (25 bp):
ATAGCTTGTAGGATACATTTATGTC
Found at i:32752120 original size:6 final size:6
Alignment explanation
Indices: 32752111--32752146 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
32752101 AAAAATTAAA
32752111 AAAATT AAAATT AAAATT AGAAATAT AAAATT AAAA
1 AAAATT AAAATT AAAATT A-AAAT-T AAAATT AAAA
32752147 AATTAAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 18 0.64
7 8 0.29
8 2 0.07
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (6 bp):
AAAATT
Found at i:32752139 original size:14 final size:12
Alignment explanation
Indices: 32752111--32752146 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 12
32752101 AAAAATTAAA
32752111 AAAATTAAAATT
1 AAAATTAAAATT
32752123 AAAATTAGAAATAT
1 AAAATTA-AAAT-T
32752137 AAAATTAAAA
1 AAAATTAAAA
32752147 AATTAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.32
13 7 0.32
14 8 0.36
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (12 bp):
AAAATTAAAATT
Found at i:32752141 original size:20 final size:21
Alignment explanation
Indices: 32752102--32752146 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
32752092 ATAATTGTAA
32752102 AAAATTAAAAAAATTAAAATT
1 AAAATTAAAAAAATTAAAATT
* *
32752123 AAAATTAGAAATA-TAAAATT
1 AAAATTAAAAAAATTAAAATT
32752143 AAAA
1 AAAA
32752147 AATTAAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAATTAAAAAAATTAAAATT
Found at i:32752631 original size:3 final size:3
Alignment explanation
Indices: 32752623--32752669 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
32752613 ATTAATTCCC
32752623 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32752670 CTGTTTGGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32760826 original size:40 final size:39
Alignment explanation
Indices: 32760781--32760910 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
32760771 CGGAATACAA
32760781 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
32760821 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * * *
32760861 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCCTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
32760901 CCGGATATAA
1 CCGGATATAA
32760911 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:32762991 original size:27 final size:27
Alignment explanation
Indices: 32762973--32763045 Score: 112
Period size: 28 Copynumber: 2.7 Consensus size: 27
32762963 ATAGTGAGTC
*
32762973 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAGTCAACT
32763000 CGCACACTTAGTGCTATAT-GATCAAACT
1 CGCACACTTAGTGCTATATAG-TC-AACT
32763028 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
32763046 CAAATTTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
27 21 0.49
28 22 0.51
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAGTCAACT
Found at i:32763036 original size:28 final size:27
Alignment explanation
Indices: 32762973--32763045 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
32762963 ATAGTGAGTC
32762973 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
32763000 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
32763028 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
32763046 CAAATTTTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:32769188 original size:63 final size:63
Alignment explanation
Indices: 32769111--32769239 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
32769101 CAAATGTGTA
32769111 AATTTTCCAAAATATGAATTATGGGGTAAATTGAATAGATTGAATACTGAATGTACTGGATTT
1 AATTTTCCAAAATATGAATTATGGGGTAAATTGAATAGATTGAATACTGAATGTACTGGATTT
32769174 AATTTTCCAAAATATGAATTATGGGGTAAATTGAATAGATTGAATACTGAATGTACTGGATTT
1 AATTTTCCAAAATATGAATTATGGGGTAAATTGAATAGATTGAATACTGAATGTACTGGATTT
32769237 AAT
1 AAT
32769240 AATATATAGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.36
Consensus pattern (63 bp):
AATTTTCCAAAATATGAATTATGGGGTAAATTGAATAGATTGAATACTGAATGTACTGGATTT
Found at i:32769225 original size:33 final size:32
Alignment explanation
Indices: 32769121--32769225 Score: 83
Period size: 33 Copynumber: 3.3 Consensus size: 32
32769111 AATTTTCCAA
32769121 AATATGAATTATGGGGTAAATTGAATAGATTG
1 AATATGAATTATGGGGTAAATTGAATAGATTG
** * * ** *
32769153 AATACTGAATGTACTGGATTTAATT--TTCCA--A
1 AATA-TGAAT-TA-TGGGGTAAATTGAATAGATTG
32769184 AATATGAATTATGGGGTAAATTGAATAGATTG
1 AATATGAATTATGGGGTAAATTGAATAGATTG
32769216 AATACTGAAT
1 AATA-TGAAT
32769226 GTACTGGATT
Statistics
Matches: 51, Mismatches: 14, Indels: 15
0.64 0.17 0.19
Matches are distributed among these distances:
28 8 0.16
29 2 0.04
30 7 0.14
31 4 0.08
32 8 0.16
33 12 0.24
34 2 0.04
35 8 0.16
ACGTcount: A:0.40, C:0.05, G:0.20, T:0.35
Consensus pattern (32 bp):
AATATGAATTATGGGGTAAATTGAATAGATTG
Found at i:32769639 original size:23 final size:23
Alignment explanation
Indices: 32769588--32769678 Score: 92
Period size: 23 Copynumber: 3.8 Consensus size: 23
32769578 TCATCTTGTA
* *
32769588 AGAGCTTACTATTTTTAGCTTATT
1 AGAGCTTACTA-TTTCAGCTCATT
* *
32769612 GGAGCTTACTATTTCAGCTCGTT
1 AGAGCTTACTATTTCAGCTCATT
** *
32769635 AGAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACTATTTCAGCTCATT
32769658 AGAGCTTACTATCCTTCAGCT
1 AGAGCTTACTAT--TTCAGCT
32769679 TAGGAGAAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
23 37 0.69
24 10 0.19
25 7 0.13
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (23 bp):
AGAGCTTACTATTTCAGCTCATT
Found at i:32769846 original size:20 final size:19
Alignment explanation
Indices: 32769795--32769834 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
32769785 TTTAACGAGC
32769795 ATAAATACTGTTTATATGG
1 ATAAATACTGTTTATATGG
32769814 ATAAATACTGTTTATATGG
1 ATAAATACTGTTTATATGG
32769833 AT
1 AT
32769835 GAGCTACTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (19 bp):
ATAAATACTGTTTATATGG
Found at i:32771117 original size:8 final size:8
Alignment explanation
Indices: 32771106--32771133 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
32771096 TAGTATTTGA
32771106 GTATGAAT
1 GTATGAAT
32771114 GTATGAAT
1 GTATGAAT
32771122 GTATGAAT
1 GTATGAAT
32771130 GTAT
1 GTAT
32771134 TAGATATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (8 bp):
GTATGAAT
Found at i:32777122 original size:39 final size:39
Alignment explanation
Indices: 32777079--32777220 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
32777069 ACCAGTTCGA
* * * * *
32777079 AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCGGATATAATTCCAGCACAT
*
32777118 AGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
32777157 TGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
32777196 AGCCTGCGGACCCTAAGTTCGGATA
1 AGCCTGCGGACCTTAAGTCCGGATA
32777221 AACATCACTG
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
38 3 0.03
39 88 0.97
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:32779454 original size:27 final size:27
Alignment explanation
Indices: 32779424--32779476 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
32779414 TTTCTCTTCT
32779424 ATTTTACTC-CTTTTTTATGCTTACTCC
1 ATTTTACTCTC-TTTTTATGCTTACTCC
32779451 ATTTTACTCTCTTTTTATGCTTACTC
1 ATTTTACTCTCTTTTTATGCTTACTC
32779477 TCATAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.15, C:0.25, G:0.04, T:0.57
Consensus pattern (27 bp):
ATTTTACTCTCTTTTTATGCTTACTCC
Found at i:32781101 original size:26 final size:25
Alignment explanation
Indices: 32781049--32781102 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
32781039 TTTATCTTTA
*
32781049 TTTATCTTCTTTAAGTACTTTTTAT
1 TTTATCTTCTTTAAGTACTTTTCAT
*
32781074 TTTATTTTCATTTAA-TACTATTTCAT
1 TTTATCTTC-TTTAAGTACT-TTTCAT
32781100 TTT
1 TTT
32781103 TAGGTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATCTTCTTTAAGTACTTTTCAT
Found at i:32785670 original size:516 final size:516
Alignment explanation
Indices: 32784698--32785729 Score: 2037
Period size: 516 Copynumber: 2.0 Consensus size: 516
32784688 CACTATTAAC
32784698 GATGACCCTGAGAGAGTCAAGTTTTGGATTGAGAACATGATTCGGGTATTTGATGAACTGTCATA
1 GATGACCCTGAGAGAGTCAAGTTTTGGATTGAGAACATGATTCGGGTATTTGATGAACTGTCATA
32784763 CACACCTGAAGAATGTTTAAAATGTGTTGTATCACTGTTGAGAGACACTGTGTATCAATGGTGGA
66 CACACCTGAAGAATGTTTAAAATGTGTTGTATCACTGTTGAGAGACACTGTGTATCAATGGTGGA
32784828 ATATCTTGACATCTGTAGTTCCACGAGAAAGAGTTAGTTGGGAGTTCTTTCAAGTTGAATTTAGA
131 ATATCTTGACATCTGTAGTTCCACGAGAAAGAGTTAGTTGGGAGTTCTTTCAAGTTGAATTTAGA
*
32784893 ATGAAATACATCTACCAAAGGTTCATTGATTAGAGAAGAAAAGAATTTTTTGAATTGAAACAGGG
196 ATGAAATACATCTACCAAAGGTTCATTGATTAGAAAAGAAAAGAATTTTTTGAATTGAAACAGGG
32784958 CCAAATGTCGGTAATAGAATATGAAAGAGAGTTTGTACGACTTAACAAATATGCTCGTGAATGTG
261 CCAAATGTCGGTAATAGAATATGAAAGAGAGTTTGTACGACTTAACAAATATGCTCGTGAATGTG
32785023 TTTCTTCTGAAGTTATAATGTGTAAAAGGTTCAAGGATGGATTGAATGAAGAAATCAGACTATTA
326 TTTCTTCTGAAGTTATAATGTGTAAAAGGTTCAAGGATGGATTGAATGAAGAAATCAGACTATTA
32785088 GTTGGAATTCTTGAGTTGAAAGAGTTTGTCGTTCTGTTTGACAGAGCTTGTAAAGCCGAAGAACT
391 GTTGGAATTCTTGAGTTGAAAGAGTTTGTCGTTCTGTTTGACAGAGCTTGTAAAGCCGAAGAACT
*
32785153 TTGCAAAGAGAAAAGAAAAACCGATTCTGAGGCTAGAGATTTTAGAAAGAGATTTGTGGCA
456 TTGCAAAGAGAAAAGAAAAACCGATTCTGAGCCTAGAGATTTTAGAAAGAGATTTGTGGCA
32785214 GATGACCCTGAGAGAGTCAAGTTTTGGATTGAGAACATGATTCGGGTATTTGATGAACTGTCATA
1 GATGACCCTGAGAGAGTCAAGTTTTGGATTGAGAACATGATTCGGGTATTTGATGAACTGTCATA
32785279 CACACCTGAAGAATGTTTAAAATGTGTTGTATCACTGTTGAGAGACACTGTGTATCAATGGTGGA
66 CACACCTGAAGAATGTTTAAAATGTGTTGTATCACTGTTGAGAGACACTGTGTATCAATGGTGGA
32785344 ATATCTTGACATCTGTAGTTCCACGAGAAAGAGTTAGTTGGGAGTTCTTTCAAGTTGAATTTAGA
131 ATATCTTGACATCTGTAGTTCCACGAGAAAGAGTTAGTTGGGAGTTCTTTCAAGTTGAATTTAGA
32785409 ATGAAATACATCTACCAAAGGTTCATTGATTAGAAAAGAAAAGAATTTTTTGAATTGAAACAGGG
196 ATGAAATACATCTACCAAAGGTTCATTGATTAGAAAAGAAAAGAATTTTTTGAATTGAAACAGGG
32785474 CCAAATGTCGGTAATAGAATATGAAAGAGAGTTTGTACGACTTAACAAATATGCTCGTGAATGTG
261 CCAAATGTCGGTAATAGAATATGAAAGAGAGTTTGTACGACTTAACAAATATGCTCGTGAATGTG
32785539 TTTCTTCTGAAGTTATAATGTGTAAAAGGTTCAAGGATGGATTGAATGAAGAAATCAGACTATTA
326 TTTCTTCTGAAGTTATAATGTGTAAAAGGTTCAAGGATGGATTGAATGAAGAAATCAGACTATTA
32785604 GTTGGAATTCTTGAGTTGAAAGAGTTTGTCGTTCTGTTTGACAGAGCTTGTAAAGCCGAAGAACT
391 GTTGGAATTCTTGAGTTGAAAGAGTTTGTCGTTCTGTTTGACAGAGCTTGTAAAGCCGAAGAACT
*
32785669 TTGCAAAGAGAAAAGAAAAACCGATTCTGAGCCTAGAGATTTTAGAAAGATATTTGTGGCA
456 TTGCAAAGAGAAAAGAAAAACCGATTCTGAGCCTAGAGATTTTAGAAAGAGATTTGTGGCA
32785730 AATCACATCA
Statistics
Matches: 513, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
516 513 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (516 bp):
GATGACCCTGAGAGAGTCAAGTTTTGGATTGAGAACATGATTCGGGTATTTGATGAACTGTCATA
CACACCTGAAGAATGTTTAAAATGTGTTGTATCACTGTTGAGAGACACTGTGTATCAATGGTGGA
ATATCTTGACATCTGTAGTTCCACGAGAAAGAGTTAGTTGGGAGTTCTTTCAAGTTGAATTTAGA
ATGAAATACATCTACCAAAGGTTCATTGATTAGAAAAGAAAAGAATTTTTTGAATTGAAACAGGG
CCAAATGTCGGTAATAGAATATGAAAGAGAGTTTGTACGACTTAACAAATATGCTCGTGAATGTG
TTTCTTCTGAAGTTATAATGTGTAAAAGGTTCAAGGATGGATTGAATGAAGAAATCAGACTATTA
GTTGGAATTCTTGAGTTGAAAGAGTTTGTCGTTCTGTTTGACAGAGCTTGTAAAGCCGAAGAACT
TTGCAAAGAGAAAAGAAAAACCGATTCTGAGCCTAGAGATTTTAGAAAGAGATTTGTGGCA
Found at i:32793155 original size:40 final size:40
Alignment explanation
Indices: 32793110--32793297 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
32793100 ATAACCACAA
* *
32793110 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32793150 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
32793190 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32793230 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
32793270 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
32793298 GTATCATTCA
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:32793213 original size:80 final size:79
Alignment explanation
Indices: 32793090--32793301 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 79
32793080 TCTTCGGAAT
* *
32793090 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32793154 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
32793169 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32793234 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
32793249 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
32793302 CATTCAATTG
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.04
80 114 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:32800109 original size:40 final size:40
Alignment explanation
Indices: 32800064--32800251 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
32800054 ATAACCACAA
* *
32800064 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32800104 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
32800144 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32800184 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
32800224 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
32800252 GTATCATTCA
Statistics
Matches: 136, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
40 134 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:32800167 original size:80 final size:79
Alignment explanation
Indices: 32800044--32800255 Score: 318
Period size: 80 Copynumber: 2.7 Consensus size: 79
32800034 TCTTCGGAAT
* *
32800044 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32800108 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
32800123 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32800188 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
32800203 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
32800256 CATTCAATTG
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.04
80 114 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:32807069 original size:40 final size:40
Alignment explanation
Indices: 32807024--32807210 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
32807014 ATAACCACAA
* *
32807024 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32807064 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
*
32807104 GTACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
32807144 GCACAAATGCCTTCGGGTCTTAACCC-GATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
32807183 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
32807211 GTATCATTCA
Statistics
Matches: 132, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 31 0.23
40 101 0.77
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:32807127 original size:80 final size:79
Alignment explanation
Indices: 32807004--32807214 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 79
32806994 TCTTCGGAAT
* *
32807004 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32807068 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
32807083 TTAGCCCGGATATAACAACTCGTACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
32807148 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * *
32807163 TTAACCC-GATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
32807215 CATTCAATTG
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 42 0.36
80 75 0.64
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:32808321 original size:21 final size:20
Alignment explanation
Indices: 32808297--32808340 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
32808287 AATAGGTTCA
32808297 ATGGGCATAAATACTATTTAT
1 ATGGG-ATAAATACTATTTAT
*
32808318 AT-GGATAAATACTGTTTAT
1 ATGGGATAAATACTATTTAT
32808337 ATGG
1 ATGG
32808341 ATGAACTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 16 0.76
20 3 0.14
21 2 0.10
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (20 bp):
ATGGGATAAATACTATTTAT
Found at i:32808325 original size:19 final size:19
Alignment explanation
Indices: 32808303--32808342 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
32808293 TTCAATGGGC
32808303 ATAAATACTATTTATATGG
1 ATAAATACTATTTATATGG
*
32808322 ATAAATACTGTTTATATGG
1 ATAAATACTATTTATATGG
32808341 AT
1 AT
32808343 GAACTACTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.42
Consensus pattern (19 bp):
ATAAATACTATTTATATGG
Found at i:32812074 original size:25 final size:24
Alignment explanation
Indices: 32812042--32812092 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
32812032 ATAAGTTTTC
*
32812042 AAAAAAATAGAAAAAAATTGTGTAA
1 AAAAAAATAGAAAAAAATAGTG-AA
**
32812067 AAAAAAATATTAAAAAATAGTGAA
1 AAAAAAATAGAAAAAAATAGTGAA
32812091 AA
1 AA
32812093 TACAAAAGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.20
Consensus pattern (24 bp):
AAAAAAATAGAAAAAAATAGTGAA
Found at i:32812144 original size:15 final size:16
Alignment explanation
Indices: 32812124--32812153 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32812114 TATATATATT
32812124 AAAAAAAAG-AGTTTC
1 AAAAAAAAGTAGTTTC
32812139 AAAAAAAAGTAGTTT
1 AAAAAAAAGTAGTTT
32812154 TGTACGTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.60, C:0.03, G:0.13, T:0.23
Consensus pattern (16 bp):
AAAAAAAAGTAGTTTC
Found at i:32815863 original size:48 final size:48
Alignment explanation
Indices: 32815735--32816591 Score: 1413
Period size: 48 Copynumber: 18.0 Consensus size: 48
32815725 AGATAAATAT
* *
32815735 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
32815783 ATATATGT-TGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32815830 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32815878 ATATATAT-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32815925 ATATATGTGTGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32815973 ATATATAT--GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32816019 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
32816067 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32816115 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32816163 ATATATAT-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32816210 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32816258 ATATAT-TGAGATATGTA-ATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
32816304 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32816352 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32816400 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32816448 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32816496 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32816544 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32816592 TGTTGTAACA
Statistics
Matches: 763, Mismatches: 39, Indels: 14
0.94 0.05 0.02
Matches are distributed among these distances:
46 79 0.10
47 155 0.20
48 529 0.69
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:32816244 original size:285 final size:284
Alignment explanation
Indices: 32815735--32816591 Score: 1520
Period size: 285 Copynumber: 3.0 Consensus size: 284
32815725 AGATAAATAT
32815735 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGT-TGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
32815799 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
32815864 ATGGCTAATGTGAAATATATATAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
131 ATGGCTAATGTGAAATATATATAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
*
32815929 ATGTGTGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGATATGTATATGT
196 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATAT-TGATATGTATATGT
32815994 GGTAAAGCCGAATGGCTAATGTGAA
260 GGTAAAGCCGAATGGCTAATGTGAA
32816019 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
32816084 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
32816149 ATGGCTAATGTGAAATATATATAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
131 ATGGCTAATGTGAAATATATATAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
32816214 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATTGAGATATGTA-ATG
196 ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATT--GATATGTATATG
32816278 TGGTAAAGCCGAATGGCTAATGTGAA
259 TGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
32816304 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
* * *
32816369 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
66 AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
* *
32816434 ATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
131 ATGGCTAATGTGAAATATATAT-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATA
* *
32816499 TATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATA
195 TATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATA--T-TGATATGTATA
32816564 TGTGGTAAAGCCGAATGGCTAATGTGAA
257 TGTGGTAAAGCCGAATGGCTAATGTGAA
32816592 TGTTGTAACA
Statistics
Matches: 552, Mismatches: 13, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
284 57 0.10
285 359 0.65
286 97 0.18
287 8 0.01
288 30 0.05
289 1 0.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (284 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
AGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATATATAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
ATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATTGATATGTATATGTG
GTAAAGCCGAATGGCTAATGTGAA
Found at i:32816731 original size:37 final size:37
Alignment explanation
Indices: 32816636--32816756 Score: 199
Period size: 37 Copynumber: 3.3 Consensus size: 37
32816626 GGAAATATAT
*
32816636 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
32816673 T-CTGGTAAGACCCGATAACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32816709 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32816746 TCCGGGTAAGA
1 TCCGGGTAAGA
32816757 ATTTGTAATA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
36 32 0.42
37 44 0.58
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32817996 original size:40 final size:40
Alignment explanation
Indices: 32817932--32818163 Score: 392
Period size: 40 Copynumber: 5.8 Consensus size: 40
32817922 GAGAATTGAG
* * * *
32817932 AGTGATATATCCGGGCTAAATTCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32817972 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32818012 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
32818052 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
32818092 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
32818132 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
32818164 ATCATGCTGG
Statistics
Matches: 185, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 185 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:32821709 original size:48 final size:48
Alignment explanation
Indices: 32821638--32822457 Score: 1325
Period size: 48 Copynumber: 17.1 Consensus size: 48
32821628 CAAGATAAAT
32821638 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
32821686 ATATATGTGTGATATGTAGATGTGGTAAGGCCGAAAGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32821734 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* **
32821782 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
32821830 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGATAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* ** *
32821878 ATATATATAAGATATGTATATGTGGTAAAACCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32821926 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32821974 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32822022 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32822070 ATATGTTTGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* **
32822118 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32822166 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32822214 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32822262 ATATATATGAGATATGTAAATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32822310 ATATATGTGTGATATGTAAATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
32822358 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
32822406 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
32822454 ATAT
1 ATAT
32822458 GTATGAGTCT
Statistics
Matches: 713, Mismatches: 59, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 713 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:32823393 original size:26 final size:26
Alignment explanation
Indices: 32823363--32823442 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
32823353 TGAAATGCCC
32823363 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32823389 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
32823415 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32823441 AT
1 AT
32823443 TAATTTTTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32823849 original size:25 final size:24
Alignment explanation
Indices: 32823821--32823896 Score: 82
Period size: 25 Copynumber: 3.0 Consensus size: 24
32823811 GTATGCTTTC
*
32823821 ACGAGCTATAAATCGATAAGCTCAT
1 ACGAGCTA-AAATCGGTAAGCTCAT
*
32823846 ACGAGCTGAGAATCGGTAAGCTC-T
1 ACGAGCT-AAAATCGGTAAGCTCAT
*
32823870 CACGAGCTACAAATCGGTTAGCTCAT
1 -ACGAGCTA-AAATCGGTAAGCTCAT
32823896 A
1 A
32823897 TGATCTATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
24 2 0.05
25 39 0.91
26 2 0.05
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (24 bp):
ACGAGCTAAAATCGGTAAGCTCAT
Found at i:32823873 original size:50 final size:50
Alignment explanation
Indices: 32823790--32823896 Score: 135
Period size: 50 Copynumber: 2.1 Consensus size: 50
32823780 GTACATGTAT
* * * *
32823790 GCTCATACGAGATATGAATTGGTATGCTTTCACGAGCTATAAATCGATAA
1 GCTCATACGAGATATGAATCGGTAAGCTCTCACGAGCTACAAATCGATAA
* * *
32823840 GCTCATACGAGCTGA-GAATCGGTAAGCTCTCACGAGCTACAAATCGGTTA
1 GCTCATACGAGAT-ATGAATCGGTAAGCTCTCACGAGCTACAAATCGATAA
32823890 GCTCATA
1 GCTCATA
32823897 TGATCTATGG
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
50 48 0.98
51 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
GCTCATACGAGATATGAATCGGTAAGCTCTCACGAGCTACAAATCGATAA
Found at i:32836920 original size:19 final size:20
Alignment explanation
Indices: 32836882--32836920 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
32836872 TGATAAATGG
*
32836882 TTAAAATTGTGATTACTTGA
1 TTAAAATTGTGAGTACTTGA
*
32836902 TTAAATTTGTGAGTA-TTGA
1 TTAAAATTGTGAGTACTTGA
32836921 GATATCTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (20 bp):
TTAAAATTGTGAGTACTTGA
Found at i:32841536 original size:10 final size:10
Alignment explanation
Indices: 32841521--32841546 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32841511 ATTGAGTTCT
32841521 AAAAAATAAA
1 AAAAAATAAA
32841531 AAAAAATAAA
1 AAAAAATAAA
32841541 AAAAAA
1 AAAAAA
32841547 GATAAAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAATAAA
Found at i:32843596 original size:40 final size:40
Alignment explanation
Indices: 32843540--32843620 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
32843530 AGCTGGACAT
32843540 AAGTTTCTAAGATGCTTACACTTCAAAAAGAACTATACAA
1 AAGTTTCTAAGATGCTTACACTTCAAAAAGAACTATACAA
*
32843580 AAGTTTCTAAGTTGCTTACACTTCAAAAAGAACTATACAA
1 AAGTTTCTAAGATGCTTACACTTCAAAAAGAACTATACAA
32843620 A
1 A
32843621 CTATCAACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.44, C:0.17, G:0.10, T:0.28
Consensus pattern (40 bp):
AAGTTTCTAAGATGCTTACACTTCAAAAAGAACTATACAA
Found at i:32845121 original size:35 final size:35
Alignment explanation
Indices: 32845075--32845180 Score: 212
Period size: 35 Copynumber: 3.0 Consensus size: 35
32845065 GTTTTTAGTC
32845075 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
1 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
32845110 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
1 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
32845145 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
1 AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
32845180 A
1 A
32845181 GTTTAAATAA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 71 1.00
ACGTcount: A:0.38, C:0.11, G:0.23, T:0.28
Consensus pattern (35 bp):
AAATTGAAACAGTGGTTTTGGGACCATAAATTCGA
Found at i:32846749 original size:24 final size:24
Alignment explanation
Indices: 32846715--32846760 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
32846705 ATTCATGTCA
32846715 CAAAATATACCAATTCATCATCAT
1 CAAAATATACCAATTCATCATCAT
*
32846739 CAAAATGTACCAATTCATCATC
1 CAAAATATACCAATTCATCATC
32846761 CCTATACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.26, G:0.02, T:0.28
Consensus pattern (24 bp):
CAAAATATACCAATTCATCATCAT
Found at i:32850527 original size:79 final size:80
Alignment explanation
Indices: 32850391--32850615 Score: 386
Period size: 79 Copynumber: 2.9 Consensus size: 80
32850381 TATTCGGATG
*
32850391 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
32850454 TTTGTGAGAGTTACT
66 TTTGTGAGAGTTACT
32850469 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
32850533 TTTGTGCGAGTTACT
66 TTTGTGAGAGTTACT
* *
32850548 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGT-CCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
32850612 TTTG
66 TTTG
32850616 AGCAAGTAGC
Statistics
Matches: 140, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
78 29 0.21
79 73 0.52
80 38 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTGAGAGTTACT
Found at i:32850629 original size:79 final size:80
Alignment explanation
Indices: 32850395--32850648 Score: 385
Period size: 79 Copynumber: 3.2 Consensus size: 80
32850385 CGGATGATAA
*
32850395 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
*
32850459 G-AGAGTTACTATAAC
66 GCA-AGTTACTATATC
32850474 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
*
32850538 GCGAGTTACTATATC
66 GCAAGTTACTATATC
* *
32850553 CGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGT-CCGAAGGCATTTGA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
32850617 GCAAG-TAGCTATATC
66 GCAAGTTA-CTATATC
* *
32850632 C-GGCTAAATTCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32850649 TACTTGGTTT
Statistics
Matches: 163, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
78 41 0.25
79 84 0.52
80 38 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGTTACTATATC
Found at i:32850648 original size:39 final size:40
Alignment explanation
Indices: 32850391--32850615 Score: 386
Period size: 40 Copynumber: 5.7 Consensus size: 40
32850381 TATTCGGATG
32850391 ATAA-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32850430 A-ATCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32850469 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32850508 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32850548 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32850588 ATAACCGGGCTAAGT-CCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
32850616 AGCAAGTAGC
Statistics
Matches: 176, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
38 1 0.01
39 87 0.49
40 88 0.50
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32857652 original size:40 final size:40
Alignment explanation
Indices: 32857590--32857817 Score: 404
Period size: 40 Copynumber: 5.7 Consensus size: 40
32857580 TATTCAGATG
32857590 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32857630 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
32857670 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32857710 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
32857750 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
32857790 A-AACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
32857818 AGCAAGTAGC
Statistics
Matches: 179, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 26 0.15
40 153 0.85
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:32861008 original size:27 final size:28
Alignment explanation
Indices: 32860956--32861008 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
32860946 TATTGTAATA
* * *
32860956 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTAAGGCCCAGATTAACACTGATAT
32860984 GGGCTAAGGCCCA-ATTAACACTGAT
1 GGGCTAAGGCCCAGATTAACACTGAT
32861009 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (28 bp):
GGGCTAAGGCCCAGATTAACACTGATAT
Found at i:32862907 original size:45 final size:47
Alignment explanation
Indices: 32862843--32862935 Score: 136
Period size: 45 Copynumber: 2.0 Consensus size: 47
32862833 TGAGATATGA
* *
32862843 TATTGAGATAGCTTCGGC-TATGTATTGGCACTTA-GGTGCAAGATT
1 TATTGAGATAACTTCGGCATATATATTGGCACTTAGGGTGCAAGATT
*
32862888 TATTGAGATAACTTCGGCTATATATATTGGCACTTAGGGTGCGAGATT
1 TATTGAGATAACTTCGGC-ATATATATTGGCACTTAGGGTGCAAGATT
32862936 CCCTAGTATC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 17 0.40
47 15 0.36
48 10 0.24
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (47 bp):
TATTGAGATAACTTCGGCATATATATTGGCACTTAGGGTGCAAGATT
Found at i:32868998 original size:25 final size:25
Alignment explanation
Indices: 32868969--32869017 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32868959 TCACTTTAGT
*
32868969 GATCCTAATTAACCTCATAACTCGG
1 GATCCTAATTAACCTCAGAACTCGG
*
32868994 GATCCTAATTAACTTCAGAACTCG
1 GATCCTAATTAACCTCAGAACTCG
32869018 AGTTTTATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.29
Consensus pattern (25 bp):
GATCCTAATTAACCTCAGAACTCGG
Found at i:32872491 original size:17 final size:17
Alignment explanation
Indices: 32872469--32872511 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
32872459 ATTTCATTTA
**
32872469 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
32872486 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
32872503 AAAT-TCAAT
1 AAATGTCAAT
32872512 ACAATCATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:32876780 original size:27 final size:27
Alignment explanation
Indices: 32876701--32876780 Score: 117
Period size: 26 Copynumber: 3.0 Consensus size: 27
32876691 ATACAACAAC
*
32876701 AATGAATTACCTTTGTGGCATAATCTA
1 AATGAATAACCTTTGTGGCATAATCTA
* *
32876728 AATGAATAGCATTT-TGGCATAATCTA
1 AATGAATAACCTTTGTGGCATAATCTA
*
32876754 AATGAATAACCTTTGTGGCATACTCTA
1 AATGAATAACCTTTGTGGCATAATCTA
32876781 TGTGGTCACC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (27 bp):
AATGAATAACCTTTGTGGCATAATCTA
Found at i:32879265 original size:42 final size:42
Alignment explanation
Indices: 32879181--32879268 Score: 113
Period size: 42 Copynumber: 2.1 Consensus size: 42
32879171 CAATGCTGAC
* ** * *
32879181 GCCATGTCCCAGAGATGGTCTTATACGGGACCTCATATCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAAACCACATAGCGAT
* *
32879223 GCCATGTCCCAGACATGGTCTTATACGAAATCACTTAGCGAT
1 GCCATGTCCCAGACATGGTCTTATACGAAACCACATAGCGAT
32879265 GCCA
1 GCCA
32879269 AAGCAATATC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (42 bp):
GCCATGTCCCAGACATGGTCTTATACGAAACCACATAGCGAT
Found at i:32879313 original size:48 final size:48
Alignment explanation
Indices: 32879232--32879352 Score: 143
Period size: 48 Copynumber: 2.5 Consensus size: 48
32879222 TGCCATGTCC
* ** * * *
32879232 CAGACATGGTCTTATACGAAATCACTTAGCGATGCCAAAGCAATATCT
1 CAGACATGGTCTTACACGGGATCTCGTATCGATGCCAAAGCAATATCT
* * * * *
32879280 CGGATATGGTCTTACACGGGATCTCGTATCGATGCCAATGCCATGTCT
1 CAGACATGGTCTTACACGGGATCTCGTATCGATGCCAAAGCAATATCT
32879328 CAGACATGGTCTTACACGGGATCTC
1 CAGACATGGTCTTACACGGGATCTC
32879353 ATAAATCATG
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 60 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
CAGACATGGTCTTACACGGGATCTCGTATCGATGCCAAAGCAATATCT
Found at i:32882876 original size:40 final size:39
Alignment explanation
Indices: 32882708--32882878 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
32882698 AGAAATTGAA
* *
32882708 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
32882748 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
32882788 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
32882828 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
32882868 TGATATCCGGG
1 TGATATCCGGG
32882879 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:32890896 original size:40 final size:40
Alignment explanation
Indices: 32890804--32890953 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
32890794 AAATTGAATG
* * * *
32890804 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-G-AAAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
32890842 TTATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
* * *
32890882 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGAT
* *
32890922 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
32890954 AAATCGTGAT
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
38 28 0.30
39 4 0.04
40 60 0.64
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGAT
Found at i:32890968 original size:40 final size:38
Alignment explanation
Indices: 32890800--32890984 Score: 155
Period size: 40 Copynumber: 4.8 Consensus size: 38
32890790 TGAGAAATTG
* *
32890800 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-A
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
32890839 AAT-T-TATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
32890875 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
32890915 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
32890955 AATCGTGATATCCGGG-TAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
32890985 CTTGGTGCGG
Statistics
Matches: 119, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
35 2 0.02
36 4 0.03
37 2 0.02
38 20 0.17
39 18 0.15
40 72 0.61
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:32898513 original size:42 final size:42
Alignment explanation
Indices: 32898431--32898514 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
32898421 ATGCCGACGT
** * *
32898431 CATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGC
1 CATGTCCCAGACATGGTCTTATACGAAACCACATAACGATGC
* * * *
32898473 CATGTCCTAGACATGGTCTTATACTAAATCACTTAACGATGC
1 CATGTCCCAGACATGGTCTTATACGAAACCACATAACGATGC
32898515 TGAAACCATA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (42 bp):
CATGTCCCAGACATGGTCTTATACGAAACCACATAACGATGC
Found at i:32903732 original size:39 final size:39
Alignment explanation
Indices: 32903678--32903797 Score: 177
Period size: 39 Copynumber: 3.1 Consensus size: 39
32903668 GACATTCAGT
32903678 GAATTATATCTGGACTTAGGGTCCGCAGGCTATGTGCTG
1 GAATTATATCTGGACTTAGGGTCCGCAGGCTATGTGCTG
* *
32903717 GAATTATATCTGGACTTGGGGTCCGTAGGCTATGTGCTG
1 GAATTATATCTGGACTTAGGGTCCGCAGGCTATGTGCTG
* * * * *
32903756 GAATTATAACCGGACTTAAGGTCCACAGGCTACGTGCTG
1 GAATTATATCTGGACTTAGGGTCCGCAGGCTATGTGCTG
32903795 GAA
1 GAA
32903798 ATATGTCCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (39 bp):
GAATTATATCTGGACTTAGGGTCCGCAGGCTATGTGCTG
Found at i:32905954 original size:44 final size:44
Alignment explanation
Indices: 32905792--32905962 Score: 186
Period size: 44 Copynumber: 3.8 Consensus size: 44
32905782 ATGGTTGAGC
*
32905792 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCAC-TATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * * *
32905835 ATGTCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA
32905884 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
32905928 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32905963 GGGGGGGTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 35 0.33
45 28 0.27
46 3 0.03
47 31 0.30
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:32906856 original size:20 final size:20
Alignment explanation
Indices: 32906819--32906861 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
32906809 CTGTTCTGAA
* *
32906819 TTTAAAAATTCATAATAAAT
1 TTTAAAAAATAATAATAAAT
* *
32906839 TTTAAAAAATAATTATAAGT
1 TTTAAAAAATAATAATAAAT
32906859 TTT
1 TTT
32906862 TATTTATATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTAAAAAATAATAATAAAT
Found at i:32913370 original size:46 final size:46
Alignment explanation
Indices: 32913320--32913492 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
32913310 TGGTTGAGCA
*
32913320 TCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
32913366 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* *
32913411 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
*
32913459 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32913493 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 5 0.05
46 57 0.53
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:32913476 original size:93 final size:93
Alignment explanation
Indices: 32913317--32913487 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32913307 GGATGGTTGA
* *
32913317 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGT
32913382 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
32913410 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC-GAACTCGTTGAG
32913474 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
32913488 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32915417 original size:29 final size:29
Alignment explanation
Indices: 32915385--32915461 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
32915375 AATCATATTC
*
32915385 ATATGGCCCATTAGGCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
32915414 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
32915443 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
32915462 GTCACATTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:32915421 original size:57 final size:58
Alignment explanation
Indices: 32915351--32915461 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
32915341 AATTTCACAT
* ** *
32915351 ACCTATATCTGGCCCATTAAG-CTGAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
32915408 ACCTATATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
32915462 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:32917538 original size:961 final size:961
Alignment explanation
Indices: 32915672--32917582 Score: 3216
Period size: 961 Copynumber: 2.0 Consensus size: 961
32915662 TTGCAAGACT
* *
32915672 ACCGTAGCCAAACTTTCGGCTTTTCGACATTTCAGCTTTTGCTGATACATAATGTGTGTGCAATG
1 ACCGTAGCCAAACTTTCAGCTTTTCGACATTTCAGCTTTTGCCGATACATAATGTGTGTGCAATG
*
32915737 TATGTACACACCTGGTAAGCAAGCATACTGCGATTCCCTTAGTCCAAACCTGCAAACGATATCAC
66 TATGTACACACCTGGTAAGCAAGCATACTGCGATTCCCTTAGTCCAAACCTACAAACGATATCAC
* *
32915802 CCTTCCATTAATCGCATGCTTAATACATATCCTTACTCAAATCGAAACCTCACATTAACCTTACC
131 CCTTCCATTAATCGCATGCTTAATACATATCCTTACTAAAACCGAAACCTCACATTAACCTTACC
32915867 TTGCGCGATCAACCCTTTCTTAAATCACTAACCACGATCAACTCCTAAATCAAAACCGAAAACAC
196 TTGCGCGATCAACCCTTTCTTAAATCACTAACCACGATCAACTCCTAAATCAAAACCGAAAACAC
* * * * *
32915932 CTAAAGAGCAATTTGGCAAAGAGCTAAGATCCGAGATCTGATACTAATTCCACTAGATTCGGTCA
261 CTAAAGAGCAATTCGACAAAGAGCTAAGATCCAAGATCCGATACTAATTCCACTAGATTAGGTCA
* * * *
32915997 AAGAGTATTCAGCCCTTGGGGGATTCGACTTTTCGGCTTTTCAAAATTAGGATTGTGAATAAGGT
326 AAGAGTATTCAGCCCTTGGGAGATTCGACTTTTCGACTTTTCAAAATTAGGATGGTGAATAAAGT
* * *
32916062 TTATTTGGTATAGATTAAAGAAGAAGAGTAGAAGAAGAAATTGGCTAAGTAAAACAAAGAAAATT
391 TTATTTGGTACAAATTAAAGAAGAAGAGTAGAAGAAGAAATCGGCTAAGTAAAACAAAGAAAATT
* *
32916127 GTGTAGAGAAGAATAGAAATCAGCGGGAAGAAAAGAAAGAAAAACAAAAGGGTTTTCGGCTTTTT
456 GTGTAGAGAAGAATAGAAATCAGCCGGAAGAAAAGAAAGAAAAACAAAAGGGTTTTCGACTTTTT
* *
32916192 GGATCTTGAAAAGAAAAGGGTTTTCGACTTTTGAAGAAAGGGGTTTCTAGCAACAAGGTGAAGAA
521 GGATCTTGAAAAGAAAAGGGTTTTCGACTTTTGAAGAAAAGGGTTTCTAGCAACAAAGTGAAGAA
* *
32916257 GAATTTCAGCAGTCGCCTGGTAACCCTGTATTCGGCCCTTATTTATAGCCCTTATAGCTGAATTT
586 GAATTTCAGCAGTAGCCTGGGAACCCTGTATTCGGCCCTTATTTATAGCCCTTATAGCTGAATTT
32916322 TCCATGCCCAATTCCCAATTCGGCTCAATCACTTCTCCCTTCTCATCTCCTCGTTTTTCTCCCTA
651 TCCATGCCCAATTCCCAATTCGGCTCAATCACTTCTCCCTTCTCATCTCCTCGTTTTTCTCCCTA
*
32916387 ATAACCCCTTGATCGTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTAACGC
716 ATAACCCCTTGATCCTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTAACGC
*
32916452 CACTTCCATCCTTCTAAAAGGCCAAAATTAAACTTCTAAAACACAAAACTAGGATTTGAACCTTG
781 CACTTCCATCCTTCTAAAAGGCCAAAATTAAACTTCTAAAACACAAAACTAGGATTCGAACCTTG
* *
32916517 GACCTCCTTGCTAGCTACTAACGCCACCTCTCTGCACTCTAAGTGGCATCACTTAGCCACTCTTC
846 GACCTCCTTGCTAGCTACTAACGCCACCTCCCTGCACTCTAAGTGGCATCACTCAGCCACTCTTC
*
32916582 CACAAGTCTTTTTGATGTTATTTTTCCTC-TATATTTATTTTTCCTCAATCA
911 CACAAGGCTTTTTGATGTTATTTTTCC-CGTATATTTATTTTTCCTCAATCA
* *
32916633 ACCGTAGCCAAACTTTCAGCTTTTCGGCATTTC-GACTTTTGCCGATACATAATGTGTGTGCAGT
1 ACCGTAGCCAAACTTTCAGCTTTTCGACATTTCAG-CTTTTGCCGATACATAATGTGTGTGCAAT
* * * * *
32916697 GTATGTACACCCCTGGTAAGCATGCGTGCTGCGATTCCCTTAGTCCAAACCTACAAATGATATCA
65 GTATGTACACACCTGGTAAGCAAGCATACTGCGATTCCCTTAGTCCAAACCTACAAACGATATCA
32916762 CCCTTCCATTAATCGCATGCTTAATACATATCCTTACTAAAACCGAAACCTCACATTAACCTTAC
130 CCCTTCCATTAATCGCATGCTTAATACATATCCTTACTAAAACCGAAACCTCACATTAACCTTAC
* * *
32916827 CTTGCGCGATCAGCCCTTTCTTAAATCACTAACCACGATCAACTCCTAGATCAAAACCGCAAACA
195 CTTGCGCGATCAACCCTTTCTTAAATCACTAACCACGATCAACTCCTAAATCAAAACCGAAAACA
* * * *
32916892 CCTAAAGAGCGATTCGATAGAGAGCTAAGATCTAAGATCCGATACTAATTCCACTAGATTAGGTC
260 CCTAAAGAGCAATTCGACAAAGAGCTAAGATCCAAGATCCGATACTAATTCCACTAGATTAGGTC
* * *
32916957 AAATAGTATTCAGCCCTTGGGAGATTCGGCTTTTTC-ACTTTTCAAAATTAGTATGGTGAATAAA
325 AAAGAGTATTCAGCCCTTGGGAGATTCGAC-TTTTCGACTTTTCAAAATTAGGATGGTGAATAAA
* *
32917021 GTTTATTTGGTACAAATTAAAGAAGAATAGTAGAAGAAGAAATCGGCTAAGTGAAACAAAGAAAA
389 GTTTATTTGGTACAAATTAAAGAAGAAGAGTAGAAGAAGAAATCGGCTAAGTAAAACAAAGAAAA
* *
32917086 TTGTGTAGAGAAGAATAGAAATCAGCCGGAAGAAAAGAAAGAAAATCAAAATGGTTTTCGACTTT
454 TTGTGTAGAGAAGAATAGAAATCAGCCGGAAGAAAAGAAAGAAAAACAAAAGGGTTTTCGACTTT
* *
32917151 TTGGATCTTGAAAAGAAAAGGGTTTTCGGCTTTTGGAGAAAAGGGTTTCTAGCAACAAAGTGAAG
519 TTGGATCTTGAAAAGAAAAGGGTTTTCGACTTTTGAAGAAAAGGGTTTCTAGCAACAAAGTGAAG
** * *
32917216 AAGAATTTTGGTAGTAGCCTGGGAACCCTGTATTCGGCCCTTATTTATAGCCCTTATAGTTGAAT
584 AAGAATTTCAGCAGTAGCCTGGGAACCCTGTATTCGGCCCTTATTTATAGCCCTTATAGCTGAAT
*
32917281 TTTCCATGCCCAATTCCCAATTCGGCTCAATCACTTCTCCCTTTTCATCTCCTCGTTTTTCTCCC
649 TTTCCATGCCCAATTCCCAATTCGGCTCAATCACTTCTCCCTTCTCATCTCCTCGTTTTTCTCCC
* *
32917346 TAATAACCCCTTGATCCTTTCCTTAATTTTCTCTTCTGAACATTCCCCTTAGAGTCCATCTTCAC
714 TAATAACCCCTTGATCCTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTAAC
*
32917411 GTCACTTCCATCCTTCTAAAAGGCCAAAATTAAACTTCTAAAACACAAAACTAGGATTCGAACCT
779 GCCACTTCCATCCTTCTAAAAGGCCAAAATTAAACTTCTAAAACACAAAACTAGGATTCGAACCT
* *
32917476 TGGACCTCCTTGCTAGCTACTAATGCCACCTCCCTGCACTCTAAGTGGCGTCACTCAGCCACTCT
844 TGGACCTCCTTGCTAGCTACTAACGCCACCTCCCTGCACTCTAAGTGGCATCACTCAGCCACTCT
*
32917541 TCCACAAGGCTTTTTGATGTTATTTTTCCCGTATTTTTATTT
909 TCCACAAGGCTTTTTGATGTTATTTTTCCCGTATATTTATTT
32917583 AAATGCCCAC
Statistics
Matches: 885, Mismatches: 62, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
960 2 0.00
961 878 0.99
962 5 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (961 bp):
ACCGTAGCCAAACTTTCAGCTTTTCGACATTTCAGCTTTTGCCGATACATAATGTGTGTGCAATG
TATGTACACACCTGGTAAGCAAGCATACTGCGATTCCCTTAGTCCAAACCTACAAACGATATCAC
CCTTCCATTAATCGCATGCTTAATACATATCCTTACTAAAACCGAAACCTCACATTAACCTTACC
TTGCGCGATCAACCCTTTCTTAAATCACTAACCACGATCAACTCCTAAATCAAAACCGAAAACAC
CTAAAGAGCAATTCGACAAAGAGCTAAGATCCAAGATCCGATACTAATTCCACTAGATTAGGTCA
AAGAGTATTCAGCCCTTGGGAGATTCGACTTTTCGACTTTTCAAAATTAGGATGGTGAATAAAGT
TTATTTGGTACAAATTAAAGAAGAAGAGTAGAAGAAGAAATCGGCTAAGTAAAACAAAGAAAATT
GTGTAGAGAAGAATAGAAATCAGCCGGAAGAAAAGAAAGAAAAACAAAAGGGTTTTCGACTTTTT
GGATCTTGAAAAGAAAAGGGTTTTCGACTTTTGAAGAAAAGGGTTTCTAGCAACAAAGTGAAGAA
GAATTTCAGCAGTAGCCTGGGAACCCTGTATTCGGCCCTTATTTATAGCCCTTATAGCTGAATTT
TCCATGCCCAATTCCCAATTCGGCTCAATCACTTCTCCCTTCTCATCTCCTCGTTTTTCTCCCTA
ATAACCCCTTGATCCTTTCCTTAATTTTCTCTTCTGAACACTCCCCTTAGAGTCCATCTTAACGC
CACTTCCATCCTTCTAAAAGGCCAAAATTAAACTTCTAAAACACAAAACTAGGATTCGAACCTTG
GACCTCCTTGCTAGCTACTAACGCCACCTCCCTGCACTCTAAGTGGCATCACTCAGCCACTCTTC
CACAAGGCTTTTTGATGTTATTTTTCCCGTATATTTATTTTTCCTCAATCA
Found at i:32926646 original size:68 final size:70
Alignment explanation
Indices: 32926574--32926771 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
32926564 ACACCCTGTA
* * * *
32926574 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
32926636 ATAAAT
65 ATAAAT
*
32926642 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
32926707 ATAAAT
65 ATAAAT
*
32926713 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
32926772 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:32926685 original size:41 final size:41
Alignment explanation
Indices: 32926640--32926757 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32926630 TGAAAGATAA
32926640 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32926681 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32926711 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32926752 ATGTAG
1 ATGTAG
32926758 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32926697 original size:71 final size:71
Alignment explanation
Indices: 32926608--32926771 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32926598 GAGATGTATC
32926608 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32926673 AGGACA
66 AGGACA
32926679 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32926744 AGGACA
66 AGGACA
32926750 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32926772 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32928579 original size:93 final size:93
Alignment explanation
Indices: 32928467--32928637 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
32928457 GCCCATAAGT
*
32928467 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
32928531 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
*
32928560 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32928625 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32928638 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32928632 original size:46 final size:46
Alignment explanation
Indices: 32928459--32928634 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
32928449 TGTAACCCGC
* *
32928459 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
32928505 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
32928555 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32928598 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32928635 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32937114 original size:48 final size:48
Alignment explanation
Indices: 32936977--32937114 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 48
32936967 ACCATGATTA
* ** *
32936977 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* *
32937025 ATGATAACCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
* * * * *
32937073 ATG-TGTGCCAATGTAAGACCATATCTGGGATATGGCGTCGGC
1 ATGAT-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
32937115 CTCGGTATGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 75 0.99
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAT
Found at i:32937124 original size:48 final size:48
Alignment explanation
Indices: 32936983--32937418 Score: 166
Period size: 42 Copynumber: 9.7 Consensus size: 48
32936973 ATTAATGAGA
* * ** * *
32936983 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAACGTTGATA--TGAT
1 GCCA-TGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
* * * * *
32937030 AACCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTGATATGTG-T
1 -GCCA-TGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
* * *
32937079 GCCAATGTAAGACCATATCTGGGATATGGCGTCGGCCTCGGTATGTGAT
1 GCC-ATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
** * * * *
32937128 TTCATATAATACCATATATGGGATATGGCAT-----T-GATATGAGAT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
** * * *
32937170 TTCATGTAATACCATATCTAGGATATGGCAT-----T-GATATGAGAT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
** *
32937212 TTCATGTAAGACCATATCTGGGATATGGCAT-----T-GATATGAGAT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
** * *
32937254 TTCATGTAAGACTATATCTGGGATATGGCAT-----T-GATATGAGAT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
** * *
32937296 TTCATGTAAGACCATATCTGGGATATGGCAT-----T-GATATGAGGT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
* * * * * * * *
32937338 CCCGTGTAAGACCATGTTTGGGACATGGCATCGACACCGACT-TGAGAT
1 GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGA-TATGTGAT
** *
32937386 TTCATATAAGACCATATCTGGGATATGGCATCG
1 GCCATGTAAGACCATATCTGGGATATGGCATCG
32937419 ATATGTAGAC
Statistics
Matches: 333, Mismatches: 44, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
42 193 0.58
43 1 0.00
48 132 0.40
49 5 0.02
50 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
GCCATGTAAGACCATATCTGGGATATGGCATCGGCATCGATATGTGAT
Found at i:32937172 original size:42 final size:42
Alignment explanation
Indices: 32937083--32937456 Score: 408
Period size: 42 Copynumber: 8.6 Consensus size: 42
32937073 ATGTGTGCCA
* * *
32937083 ATGTAAGACCATATCTGGGATATGGCGTCGGCCTCGGTATGTGATTTC
1 ATGTAAGACCATATCTGGGATATGGCAT-----T-GATATGAGATTTC
* * *
32937131 ATATAATACCATATATGGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
* *
32937173 ATGTAATACCATATCTAGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
32937215 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
*
32937257 ATGTAAGACTATATCTGGGATATGGCATTGATATGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
* **
32937299 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGGTCCC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
* * * * * *
32937341 GTGTAAGACCATGTTTGGGACATGGCATCGACACCGACTTGAGATTTC
1 ATGTAAGACCATATCTGGGATATGGCATTG--A--TA--TGAGATTTC
* * **
32937389 ATATAAGACCATATCTGGGATATGGCATCGATATGTAGA-CCC
1 ATGTAAGACCATATCTGGGATATGGCATTGATATG-AGATTTC
* *
32937431 ATGTAAGACCATGTCTGGGACATGGC
1 ATGTAAGACCATATCTGGGATATGGC
32937457 TTTGGAATTC
Statistics
Matches: 283, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
42 220 0.78
43 4 0.01
44 2 0.01
46 2 0.01
48 55 0.19
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCATATCTGGGATATGGCATTGATATGAGATTTC
Found at i:32939674 original size:27 final size:27
Alignment explanation
Indices: 32939567--32939666 Score: 164
Period size: 27 Copynumber: 3.7 Consensus size: 27
32939557 CCATGATAAC
* *
32939567 AATGAATAACCTTTGTGGCGTACTCTG
1 AATGAATAGCCTTTATGGCGTACTCTG
*
32939594 AATGAATAGCCTTTATGGCGTACTTTG
1 AATGAATAGCCTTTATGGCGTACTCTG
32939621 AATGAATAGCCTTTATGGCGTACTCTG
1 AATGAATAGCCTTTATGGCGTACTCTG
*
32939648 AATGAATAGCCTTTGTGGC
1 AATGAATAGCCTTTATGGC
32939667 ATATTCTGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (27 bp):
AATGAATAGCCTTTATGGCGTACTCTG
Found at i:32942731 original size:28 final size:29
Alignment explanation
Indices: 32942621--32942735 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
32942611 GTGAGCATGA
* *
32942621 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
32942649 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
32942678 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
32942707 ACATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
32942735 A
1 A
32942736 GATACAAGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:32944025 original size:31 final size:31
Alignment explanation
Indices: 32943990--32944051 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
32943980 TTAAATAAAC
32943990 ACAAAAAAAACTAAAATGCTATCATATTCTT
1 ACAAAAAAAACTAAAATGCTATCATATTCTT
32944021 ACAAAAAAAACTAAAATGCTATCATATTCTT
1 ACAAAAAAAACTAAAATGCTATCATATTCTT
32944052 TCTTTTACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.16, G:0.03, T:0.29
Consensus pattern (31 bp):
ACAAAAAAAACTAAAATGCTATCATATTCTT
Found at i:32957253 original size:49 final size:48
Alignment explanation
Indices: 32957108--32957367 Score: 382
Period size: 49 Copynumber: 5.4 Consensus size: 48
32957098 TACATATATG
* * * * * *
32957108 TGTGATAAAGCCGAATGGCCAATGCGATGAATGTGAAAGTGCA-TATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
*
32957155 TGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTGTA-TATA
1 TGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
32957202 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
32957251 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
*
32957300 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-TATA
32957349 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
32957368 TAATGTAAAA
Statistics
Matches: 201, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 81 0.40
49 119 0.59
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATA
Found at i:32958949 original size:28 final size:29
Alignment explanation
Indices: 32958882--32958982 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
32958872 ATAGTGAATC
*
32958882 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
32958911 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
32958939 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
32958969 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32958983 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:32966924 original size:28 final size:29
Alignment explanation
Indices: 32966857--32966957 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
32966847 ATAGTGAATC
*
32966857 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
32966886 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
32966914 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
32966944 CGCACACTTAGTGC
1 CGCACACTTAGTGC
32966958 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:32974689 original size:40 final size:39
Alignment explanation
Indices: 32974524--32974707 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32974514 AAATTGAATG
* * *
32974524 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32974564 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32974604 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32974644 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32974683 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32974708 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32974732 original size:80 final size:81
Alignment explanation
Indices: 32974564--32974752 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32974554 GCTGGAAATT
* * * *
32974564 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32974629 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32974645 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32974708 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32974724 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32974753 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32979978 original size:41 final size:40
Alignment explanation
Indices: 32979851--32979995 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
32979841 CTCGCCCAAG
* * *
32979851 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
32979891 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32979931 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
32979972 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
32979996 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 27 0.30
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:32987909 original size:39 final size:40
Alignment explanation
Indices: 32987851--32988029 Score: 148
Period size: 40 Copynumber: 4.5 Consensus size: 40
32987841 AATCAAGCAT
* *
32987851 CTTCGGGT-TTAG-CCGGATATAACCACTCGC-CCAAGGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
*** * *
32987888 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
* *** *
32987928 CTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
* * * ** * *
32987968 CTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAACCAC-TAGCACAAAGGC
*
32988009 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGTCTTAGCCCGGATA
32988030 CATTCGAGTA
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
37 8 0.07
38 4 0.03
39 14 0.12
40 62 0.53
41 28 0.24
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAACCACTAGCACAAAGGC
Found at i:32988013 original size:41 final size:40
Alignment explanation
Indices: 32987886--32988029 Score: 191
Period size: 40 Copynumber: 3.6 Consensus size: 40
32987876 CTCGCCCAAG
* * *
32987886 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
32987926 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
32987966 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
32988007 GCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGGACTTAGCCCGGATA
32988030 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:32989842 original size:27 final size:26
Alignment explanation
Indices: 32989802--32989916 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 26
32989792 AGCATGGCTG
* *
32989802 CCAGAACAAATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAG-CA
*
32989828 CCAGATACAGATA-TTATGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAG-CA
32989855 CCAGAACAGATATTTGTGGCAGAGCTA
1 CCAGAACAGATATTTGTGGCAGAGC-A
32989882 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATATTTGTGGCAGAG-CA
*
32989910 CTAGAAC
1 CCAGAAC
32989917 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 13 0.17
27 40 0.51
28 24 0.31
29 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTTGTGGCAGAGCA
Found at i:32989885 original size:54 final size:54
Alignment explanation
Indices: 32989802--32989916 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
32989792 AGCATGGCTG
*
32989802 CCAGAACAAATATTGTGACAGAGTCACCAGATACAGATA-TTATGGCAGAGCCA
1 CCAGAACAAATATTGTGACAGAGTCACCAGAAACAGATATTTATGGCAGAGCCA
* * *
32989855 CCAGAACAGATATTTGTGGCAGAG-CTACCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAAATA-TTGTGACAGAGTC-ACCAGAAACAGATATTTATGGCAGAGCCA
*
32989910 CTAGAAC
1 CCAGAAC
32989917 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 12 0.22
54 23 0.43
55 19 0.35
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAAATATTGTGACAGAGTCACCAGAAACAGATATTTATGGCAGAGCCA
Found at i:32990356 original size:8 final size:8
Alignment explanation
Indices: 32990330--32990359 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
32990320 CAAAAGGCCA
32990330 GCTTTTCG
1 GCTTTTCG
*
32990338 GCATTTCG
1 GCTTTTCG
32990346 GCTTTTCG
1 GCTTTTCG
32990354 GCTTTT
1 GCTTTT
32990360 GCTGATCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:32991816 original size:3 final size:3
Alignment explanation
Indices: 32991808--32991840 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
32991798 AAATATATGA
32991808 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32991841 GACAACATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:32993149 original size:6 final size:6
Alignment explanation
Indices: 32993119--32993231 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
32993109 AAGAAACATT
* * * *
32993119 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATTAGA ATCA-A GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
32993168 ATCAGA ATTAGA ATTAG- GTGACAGA ATTAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
32993218 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
32993232 GTGAATATAA
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
5 6 0.08
6 62 0.77
7 8 0.10
8 4 0.05
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:32993173 original size:25 final size:25
Alignment explanation
Indices: 32993119--32993231 Score: 113
Period size: 25 Copynumber: 4.6 Consensus size: 25
32993109 AAGAAACATT
* *
32993119 ATCAGAACTAGAATCAAAATG--AGA
1 ATCAGAATTAGAATC-AAGTGACAGA
32993143 ATCAGAATTAGAATCAAGTGACAGA
1 ATCAGAATTAGAATCAAGTGACAGA
* *
32993168 ATCAGAATTAGAATTAGGTGACAGA
1 ATCAGAATTAGAATCAAGTGACAGA
* * * * *
32993193 ATTAGAATCAGTATCAGGTAACAGA
1 ATCAGAATTAGAATCAAGTGACAGA
*
32993218 ATCAGAATCAGAAT
1 ATCAGAATTAGAAT
32993232 GTGAATATAA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
23 4 0.05
24 14 0.18
25 58 0.76
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (25 bp):
ATCAGAATTAGAATCAAGTGACAGA
Found at i:32993855 original size:27 final size:27
Alignment explanation
Indices: 32993826--32994046 Score: 271
Period size: 27 Copynumber: 8.1 Consensus size: 27
32993816 GGGTAAAATG
* * * *
32993826 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
32993853 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * **
32993880 GTATTTTTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCA
** *
32993907 GTAATTCTACCCTACCGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
32993934 GTAATTCTACCCTACATAGGGTATTTCA
1 GTAATTCTACCCTACA-AGGGTATTTCA
*
32993962 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
32993989 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
32994016 ATAATTTTACCCTATAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
32994043 GTAA
1 GTAA
32994047 CTTGGTAAAC
Statistics
Matches: 171, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 146 0.85
28 25 0.15
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:32994021 original size:109 final size:108
Alignment explanation
Indices: 32993826--32994029 Score: 291
Period size: 109 Copynumber: 1.9 Consensus size: 108
32993816 GGGTAAAATG
* * * * *
32993826 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTTTACC
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
***
32993891 CTACAAGGGTATTTTGGTAATTCTACCCTACCGGGGTATTTTA
66 CTACAAGGGTATTTCAATAATTCTACCCTACCGGGGTATTTTA
* *
32993934 GTAATTCTACCCTACATAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCCCACA-AGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
* *
32993999 CCTACAGGGGTATTTCAATAATTTTACCCTA
65 CCTACAAGGGTATTTCAATAATTCTACCCTA
32994030 TAAGGGTATT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
108 14 0.17
109 69 0.83
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (108 bp):
GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTCAATAATTCTACCCTACCGGGGTATTTTA
Found at i:32996054 original size:6 final size:6
Alignment explanation
Indices: 32996024--32996154 Score: 108
Period size: 6 Copynumber: 21.3 Consensus size: 6
32996014 AAGAAACATT
* * *
32996024 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
32996073 ATCAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
*
32996122 ATCAGGTA A-CAGA ATCTGA ATCAGA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA AT
32996155 GTGAATGCAA
Statistics
Matches: 100, Mismatches: 14, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
5 5 0.05
6 83 0.83
7 9 0.09
8 3 0.03
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32996086 original size:37 final size:37
Alignment explanation
Indices: 32996033--32996126 Score: 152
Period size: 37 Copynumber: 2.5 Consensus size: 37
32996023 TATCAGAACT
* *
32996033 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
*
32996070 AGAATCAGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
*
32996107 AGAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
32996127 GTAACAGAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.47, C:0.14, G:0.21, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:32996109 original size:25 final size:25
Alignment explanation
Indices: 32996081--32996151 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
32996071 GAATCAGAAT
* *
32996081 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
32996106 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
32996131 CAGAATCTGAATCAGAATCAG
1 CAGAATCAGAATCAGAATCAG
32996152 AATGTGAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:32996798 original size:27 final size:27
Alignment explanation
Indices: 32996769--32996988 Score: 273
Period size: 27 Copynumber: 8.1 Consensus size: 27
32996759 AGGAAAAATG
* * * *
32996769 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTTTACCCTACAGGGGTATTTCA
*
32996796 GTAATTCTACCCTACAGGGGTATTTC-
1 GTAATTTTACCCTACAGGGGTATTTCA
* *
32996822 GATATTTTTACCCTACAAGGGTATTTCA
1 G-TAATTTTACCCTACAGGGGTATTTCA
* * *
32996850 GTAATTCTATCCTACGGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
32996877 GTAATTTTACCCTACAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
32996904 GTAATTCTT-CCCTACAGGGGTATTTCA
1 GTAATT-TTACCCTACAGGGGTATTTCA
* * *
32996931 GTAATTCTCCCCTATAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
* *
32996958 ATAATTTTACCCTACAGGTGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
32996985 GTAA
1 GTAA
32996989 CTTGGCAAGC
Statistics
Matches: 166, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 161 0.97
28 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTCA
Found at i:32998358 original size:43 final size:43
Alignment explanation
Indices: 32998310--32998457 Score: 179
Period size: 43 Copynumber: 3.4 Consensus size: 43
32998300 CCTAGATATA
* * * *
32998310 GTCTTACATGTTATCACATTTCGATGCCACTGTCCCAGACAAG
1 GTCTTACATGTAATCACATTACGATGCCAATGTCCCAGACATG
* * * * *
32998353 GTCTTATACGAAATCATATAACGATGCCAATGTCCCAGACATG
1 GTCTTACATGTAATCACATTACGATGCCAATGTCCCAGACATG
* * * *
32998396 GTTTTACATGTAATCACAATACAATGCCAATGTCCCAAACATG
1 GTCTTACATGTAATCACATTACGATGCCAATGTCCCAGACATG
32998439 GTCTTACATGTAATCACAT
1 GTCTTACATGTAATCACAT
32998458 CTCGGTAATC
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 85 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (43 bp):
GTCTTACATGTAATCACATTACGATGCCAATGTCCCAGACATG
Found at i:33001402 original size:20 final size:20
Alignment explanation
Indices: 33001377--33001423 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
33001367 AACCGAGGAG
*
33001377 TTTAGAAAACTTTAGGGCAA
1 TTTAGAAAACTTTAGGGAAA
33001397 TTTAGAAAACTTTAGGGAAA
1 TTTAGAAAACTTTAGGGAAA
33001417 TTTAGAA
1 TTTAGAA
33001424 TAATTTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.06, G:0.19, T:0.32
Consensus pattern (20 bp):
TTTAGAAAACTTTAGGGAAA
Found at i:33010755 original size:40 final size:40
Alignment explanation
Indices: 33010711--33010807 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 40
33010701 AATCACGGGC
* * * *
33010711 CTACTCATACAAGCTGACAGTCAGGACGTAACTATTCGAG
1 CTACTCACACAAGCTGACAGTCAAGACGAAACTACTCGAG
*
33010751 CTACTCACACAAGCTGACAGTCAAGACGAAACTACTCGGG
1 CTACTCACACAAGCTGACAGTCAAGACGAAACTACTCGAG
*
33010791 CTGCTCACACAAGCTGA
1 CTACTCACACAAGCTGA
33010808 TAGGTACCCG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.19
Consensus pattern (40 bp):
CTACTCACACAAGCTGACAGTCAAGACGAAACTACTCGAG
Found at i:33012684 original size:13 final size:13
Alignment explanation
Indices: 33012666--33012695 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
33012656 TATTGGAGTT
33012666 GAATGAGATGGAA
1 GAATGAGATGGAA
33012679 GAATGAGATGGAA
1 GAATGAGATGGAA
33012692 GAAT
1 GAAT
33012696 TCAGAGCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.37, T:0.17
Consensus pattern (13 bp):
GAATGAGATGGAA
Found at i:33021400 original size:27 final size:28
Alignment explanation
Indices: 33021366--33021434 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
33021356 TACTCGATCA
* *
33021366 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
33021393 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
33021421 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33021435 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:33022805 original size:18 final size:18
Alignment explanation
Indices: 33022773--33022810 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
33022763 TCCACACCCA
33022773 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
33022793 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
33022810 T
1 T
33022811 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:33029401 original size:27 final size:28
Alignment explanation
Indices: 33029367--33029435 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
33029357 TACTCGATCA
* *
33029367 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
33029394 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
33029422 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33029436 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:33030806 original size:18 final size:18
Alignment explanation
Indices: 33030774--33030811 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
33030764 TCCACACCCA
33030774 TTTTTTTTCATCATTATCTT
1 TTTTTTTTCA-CATT-TCTT
33030794 TTTTTTTTC-CATTTCTT
1 TTTTTTTTCACATTTCTT
33030811 T
1 T
33030812 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
20 9 0.50
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTTCACATTTCTT
Found at i:33037402 original size:27 final size:28
Alignment explanation
Indices: 33037368--33037436 Score: 104
Period size: 27 Copynumber: 2.5 Consensus size: 28
33037358 TACTCGATCA
* *
33037368 CGCACACTTAGTGCCATATATTC-AGCT
1 CGCACACTTAGTGCCATATAATCAAACT
*
33037395 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCCATATAATCAAACT
33037423 CGCACACTTAGTGC
1 CGCACACTTAGTGC
33037437 TGTACAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 21 0.55
28 17 0.45
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATAATCAAACT
Found at i:33045932 original size:17 final size:18
Alignment explanation
Indices: 33045906--33045940 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
33045896 TGATTTGGGC
33045906 CATGTAGG-CCACACAGG
1 CATGTAGGCCCACACAGG
*
33045923 CATGTGGGCCCACACAGG
1 CATGTAGGCCCACACAGG
33045941 TAGTCCACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.31, G:0.31, T:0.11
Consensus pattern (18 bp):
CATGTAGGCCCACACAGG
Found at i:33052387 original size:46 final size:45
Alignment explanation
Indices: 33052335--33052538 Score: 197
Period size: 46 Copynumber: 4.5 Consensus size: 45
33052325 GTCGATGCCG
* * *
33052335 TGTCCCAGACAGGTCTTACACTGA-CACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCT---CGTAGCCGACGCA
33052381 TGTCCCAGACATGTCTTACACT-AGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
* *
33052425 TGTCCCAGACATGTCTGACACTG-GCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGAGC-A-CATCTCGTA-GCCGACGCA
* * * *
33052471 TGTCCCAGACATGTCTTACACTG-GCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTGAGCACATC-T-C-GTAGCCGACGCA
33052517 TGTCCCAGACATGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
33052539 AGCCCTCGTC
Statistics
Matches: 139, Mismatches: 9, Indels: 20
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.04
44 33 0.24
45 4 0.03
46 97 0.70
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (45 bp):
TGTCCCAGACATGTCTTACACTGAGCACATCTCGTAGCCGACGCA
Found at i:33052565 original size:46 final size:44
Alignment explanation
Indices: 33052378--33052585 Score: 181
Period size: 46 Copynumber: 4.6 Consensus size: 44
33052368 CCGTGCTGAC
*
33052378 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * *
33052422 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
33052468 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
33052514 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCC-AT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* *
33052559 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
33052586 GGCACACAAA
Statistics
Matches: 137, Mismatches: 15, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.03
44 28 0.20
45 7 0.05
46 85 0.62
47 13 0.09
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Done.