Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 110 of 318
Found at i:33679503 original size:41 final size:41
Alignment explanation
Indices: 33679405--33679523 Score: 150
Period size: 41 Copynumber: 2.9 Consensus size: 41
33679395 TGTGATTTCA
*
33679405 TGTTAGACCATGTCTGGGACATTGGCATCGATATGAGATTACG
1 TGTTAGACCATGTCTGGGACATTGGCATTGATAT--GATTACG
* *
33679448 TGTAAGACCATGTCTAGGACATTGGCATTGTATATGATT-CG
1 TGTTAGACCATGTCTGGGACATTGGCATTG-ATATGATTACG
* * *
33679489 TGTTAGACCCTGTCTGGGACAGTGGCAATGATATG
1 TGTTAGACCATGTCTGGGACATTGGCATTGATATG
33679524 TGATAGCATG
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
40 5 0.07
41 27 0.40
42 4 0.06
43 27 0.40
44 4 0.06
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (41 bp):
TGTTAGACCATGTCTGGGACATTGGCATTGATATGATTACG
Found at i:33685864 original size:68 final size:70
Alignment explanation
Indices: 33685792--33685989 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
33685782 ACACCCTGTA
* * * *
33685792 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
33685854 ATAAAT
65 ATAAAT
*
33685860 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
33685925 ATAAAT
65 ATAAAT
*
33685931 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
33685990 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:33685903 original size:41 final size:41
Alignment explanation
Indices: 33685858--33685975 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33685848 TGAAAGATAA
33685858 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33685899 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33685929 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33685970 ATGTAG
1 ATGTAG
33685976 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33685915 original size:71 final size:71
Alignment explanation
Indices: 33685826--33685989 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33685816 GAGATGTATC
33685826 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33685891 AGGACA
66 AGGACA
33685897 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33685962 AGGACA
66 AGGACA
33685968 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33685990 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33693431 original size:68 final size:70
Alignment explanation
Indices: 33693359--33693556 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
33693349 ACACCCTGTA
* * * *
33693359 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
33693421 ATAAAT
65 ATAAAT
*
33693427 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
33693492 ATAAAT
65 ATAAAT
*
33693498 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
33693557 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:33693470 original size:41 final size:41
Alignment explanation
Indices: 33693425--33693542 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
33693415 TGAAAGATAA
33693425 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
33693466 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33693496 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
33693537 ATGTAG
1 ATGTAG
33693543 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:33693482 original size:71 final size:71
Alignment explanation
Indices: 33693393--33693556 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
33693383 GAGATGTATC
33693393 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33693458 AGGACA
66 AGGACA
33693464 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
33693529 AGGACA
66 AGGACA
33693535 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
33693557 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:33696271 original size:38 final size:39
Alignment explanation
Indices: 33696228--33696301 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 39
33696218 CTCTCAATCA
*
33696228 TATAAACAGTAATTCAT-TCGATAACAGTAACTCATCCG
1 TATAAACAGTAATTCATCCCGATAACAGTAACTCATCCG
* * *
33696266 TATAAACAGTACTTCATCCCTATAACAGTAATTCAT
1 TATAAACAGTAATTCATCCCGATAACAGTAACTCAT
33696302 TTGTATAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 16 0.52
39 15 0.48
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (39 bp):
TATAAACAGTAATTCATCCCGATAACAGTAACTCATCCG
Found at i:33696275 original size:20 final size:19
Alignment explanation
Indices: 33696232--33696311 Score: 74
Period size: 19 Copynumber: 4.2 Consensus size: 19
33696222 CAATCATATA
* *
33696232 AACAGTAATTCATTCG-AT
1 AACAGTAACTCATCCGTAT
33696250 AACAGTAACTCATCCGTAT
1 AACAGTAACTCATCCGTAT
*
33696269 AAACAGT-ACTTCATCCCTAT
1 -AACAGTAAC-TCATCCGTAT
* **
33696289 AACAGTAATTCATTTGTAT
1 AACAGTAACTCATCCGTAT
33696308 AACA
1 AACA
33696312 CATAGCTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
18 14 0.27
19 21 0.41
20 16 0.31
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (19 bp):
AACAGTAACTCATCCGTAT
Found at i:33707637 original size:42 final size:43
Alignment explanation
Indices: 33707534--33707651 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 43
33707524 TGATATCGTG
* * *
33707534 TAAGACCATGTCTGGGACATCGGCATCGATTTTAGATTTACGTG
1 TAAGACCATGTCTGGGACATTGGCATCGA-TATAGATTTACGTA
*
33707578 TAAGACCATGTCTGGGACATTGGCATCGTATATA-ATTTTC-TA
1 TAAGACCATGTCTGGGACATTGGCATCG-ATATAGATTTACGTA
* * * *
33707620 TAAGACCCTATCTGGGACAGTGGCGTCGATAT
1 TAAGACCATGTCTGGGACATTGGCATCGATAT
33707652 TTGATAACTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
41 4 0.06
42 25 0.38
43 5 0.08
44 30 0.46
45 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATAGATTTACGTA
Found at i:33720683 original size:79 final size:80
Alignment explanation
Indices: 33720582--33720766 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
33720572 GCGACTCGCT
* * * *
33720582 CAAATGCCTTCGGGATGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTCGGGCT-TAGCCCGGATT-TAGTAACTCGCACGAATGCCTTCG-GATCCTAACCC
* *
33720645 GGGTTTAGTAACTT-GCA
63 GGATATAGTAACTTAGCA
* **
33720662 CAAATGCCTTCGGGCTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
*
33720727 TATAGTCACTTAGCA
66 TATAGTAACTTAGCA
*
33720742 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
33720767 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 53 0.59
80 35 0.39
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:33720766 original size:40 final size:40
Alignment explanation
Indices: 33720563--33720766 Score: 141
Period size: 40 Copynumber: 5.1 Consensus size: 40
33720553 CGGAATTTAA
** * *
33720563 CCGGATATAGCGACTCGCTC-AAATGCCTTCGGGA-TGAAGC
1 CCGGATATAGTAACTCGCACGAAA-GCCTTCGGGACT-TAGC
* * * * *
33720603 CCGGTTATAGTGACTCGCACGAATGCCTTCGAGACTTAAC
1 CCGGATATAGTAACTCGCACGAAAGCCTTCGGGACTTAGC
* * *
33720643 CCGGGTTTAGTAACTTGCAC-AAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACGAAA-GCCTTCGGGACTTAGC
* * * * *
33720682 CCGGATTTATTAACTCGCACGAATGCCTTC-GGATCCTAGT
1 CCGGATATAGTAACTCGCACGAAAGCCTTCGGGA-CTTAGC
* * *
33720722 CCGGATATAGTCACTTAGCAC-AAAGCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACGAAAGCCTTCGGGACTTAGC
33720762 CCGGA
1 CCGGA
33720767 CATCATTCGA
Statistics
Matches: 128, Mismatches: 28, Indels: 16
0.74 0.16 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.23
40 85 0.66
41 11 0.09
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACGAAAGCCTTCGGGACTTAGC
Found at i:33723818 original size:40 final size:39
Alignment explanation
Indices: 33723590--33723811 Score: 276
Period size: 40 Copynumber: 5.7 Consensus size: 39
33723580 TCGAATGATG
* *
33723590 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
33723630 TCCGGACTAAGAT-CCGAAGGCATTTGT--GAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
33723667 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
33723706 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
33723746 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
33723786 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33723812 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 8, Indels: 18
0.86 0.04 0.09
Matches are distributed among these distances:
37 28 0.17
38 7 0.04
39 45 0.27
40 79 0.48
41 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:33723833 original size:79 final size:76
Alignment explanation
Indices: 33723597--33723844 Score: 256
Period size: 79 Copynumber: 3.2 Consensus size: 76
33723587 ATGTCCGGGC
* * * *
33723597 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGAG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGCGAG
*
33723660 TTACTAATCCGGAC
64 TTACTAATCCGG-T
33723674 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCA-TT-TGCG
33723736 AGTTACTAAATCCGGGT
62 AGTTACT-AATCC-GGT
* *
33723753 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG--CGAG
33723818 -TAGCTATATCCGGT
64 TTA-CTA-ATCCGGT
* *
33723832 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
33723845 TACGTGATTC
Statistics
Matches: 147, Mismatches: 9, Indels: 28
0.80 0.05 0.15
Matches are distributed among these distances:
76 10 0.07
77 31 0.21
78 21 0.14
79 62 0.42
80 23 0.16
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (76 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGCGAGTT
ACTAATCCGGT
Found at i:33731935 original size:40 final size:39
Alignment explanation
Indices: 33731841--33732065 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 39
33731831 TCGAATGATG
* * * *
33731841 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
33731881 CCCGGACTATGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
33731921 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
33731961 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
** *
33732000 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGACTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
33732041 -CCGGACTATGTCCCGAAGGCATTTG
1 TCCGGACTAAGT-CCGAAGGCATTTG
33732066 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.71
41 9 0.06
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (39 bp):
TCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:33731985 original size:79 final size:80
Alignment explanation
Indices: 33731847--33732065 Score: 268
Period size: 79 Copynumber: 2.8 Consensus size: 80
33731837 GATGTCCGGG
* * *
33731847 CTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATACCCGGACTATGAT-CCGAAGGCATTTGTGC
1 CTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATAACCGGACTAAG-TCCCGAAGGCATTTGTGC
33731910 GAGTTACTAAATCCGAA
64 GAGTTACTAAATCCGAA
* * *
33731927 CTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGC
1 CTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-ACCGGACTAAGTCCCGAAGGCATTTGTGC
* **
33731989 GAGTTACTAATTCCGGG
64 GAGTTACTAAATCCGAA
* *
33732006 TTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGACTATGTCCCGAAGGCATTTG
1 CTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGACTAAGTCCCGAAGGCATTTG
33732066 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 67 0.56
80 43 0.36
81 8 0.07
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (80 bp):
CTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGACTAAGTCCCGAAGGCATTTGTGCGA
GTTACTAAATCCGAA
Found at i:33736503 original size:37 final size:37
Alignment explanation
Indices: 33736450--33736552 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
33736440 CGAATAGTCC
* *
33736450 CCACACGTAGTTATCGGGTCTCACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
33736487 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
33736524 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
33736553 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:33736885 original size:48 final size:47
Alignment explanation
Indices: 33736693--33737225 Score: 771
Period size: 48 Copynumber: 11.0 Consensus size: 47
33736683 ATATACACAC
* *
33736693 ATCTCCTACATATTTCACATTACCCATTCGGCTTTACCA-ATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
* *
33736740 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
* *
33736788 ATCTCATATATATATTTCACATTAGCAATTCGGCTTTACCACATATATAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
*
33736838 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
*
33736888 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
33736936 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAGAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
*
33736984 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
*
33737032 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
* *
33737080 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
* * *
33737128 ATCTCATATATATTTCAGACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
* *
33737176 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATA-AT
33737224 AT
1 AT
33737226 ATTTGTCTTG
Statistics
Matches: 454, Mismatches: 29, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
47 35 0.08
48 327 0.72
50 92 0.20
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (47 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAAT
Found at i:33737056 original size:144 final size:144
Alignment explanation
Indices: 33736693--33737225 Score: 870
Period size: 144 Copynumber: 3.7 Consensus size: 144
33736683 ATATACACAC
* * *
33736693 ATCTCCTACATATTTCACATTACCCATTCGGCTTTACCA-ATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* * *
33736757 CACTAGCCATTTGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCAATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGC
*
33736822 TTTACCACATATATAT
129 TTTACCACATATACAT
33736838 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTT
1 ATCTC--ATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTT
* *
33736903 CATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
*
33736968 TTTACCACATATAGAT
129 TTTACCACATATACAT
33736984 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* *
33737049 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTTGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
33737114 TACCACATATACAT
131 TACCACATATACAT
* * *
33737128 ATCTCATATATATTTCAGACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* *
33737193 CACTAGCCATTCGGCTTTACCACACATATATAT
66 CACTAGCCATTCGGCTTTACCACATATACATAT
33737226 ATTTGTCTTG
Statistics
Matches: 366, Mismatches: 19, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
144 227 0.62
145 5 0.01
146 45 0.12
147 31 0.08
148 58 0.16
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (144 bp):
ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:33740482 original size:27 final size:26
Alignment explanation
Indices: 33740416--33740482 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
33740406 GGGCATAATC
33740416 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
33740443 GTCA-TTTACCCTACAAGGGGTATTACG
1 GTCATTTTA-CCTAC-AGGGGTATTACG
*
33740470 GTTATTTTACCTA
1 GTCATTTTACCTA
33740483 TTTTGGGGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 7 0.19
27 25 0.69
28 4 0.11
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:33741884 original size:16 final size:17
Alignment explanation
Indices: 33741859--33741891 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33741849 GAGAGGAAAA
33741859 AAAAAACAAAG-CAAGG
1 AAAAAACAAAGCCAAGG
*
33741875 AAAAACCAAAGCCAAGG
1 AAAAAACAAAGCCAAGG
33741892 TCCCCAGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.64, C:0.18, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAACAAAGCCAAGG
Found at i:33745123 original size:40 final size:40
Alignment explanation
Indices: 33745037--33745186 Score: 123
Period size: 40 Copynumber: 3.8 Consensus size: 40
33745027 AATTGAATGA
* * **
33745037 TATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* * *
33745076 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
* *
33745117 -ATCCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
33745156 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
33745187 AAATCGTGAT
Statistics
Matches: 88, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
38 1 0.01
39 16 0.18
40 69 0.78
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:33747410 original size:36 final size:36
Alignment explanation
Indices: 33747342--33747414 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 36
33747332 TTACTGTATG
* * * * *
33747342 AAAACATAGTTTAAAATCATTAGGAGTTATCACACT
1 AAAACACAGTTTAAAACCATGAAGAGTCATCACACT
*
33747378 AAAACACAGTTTAAAACCGTGAAGAGTCATCACACT
1 AAAACACAGTTTAAAACCATGAAGAGTCATCACACT
33747414 A
1 A
33747415 TTATAATATA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (36 bp):
AAAACACAGTTTAAAACCATGAAGAGTCATCACACT
Found at i:33750439 original size:68 final size:68
Alignment explanation
Indices: 33750319--33750445 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
33750309 GCTACATTTA
* * * *
33750319 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATA
1 TCTCATAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
33750384 ATG
66 ATG
* * *
33750387 TCTCATAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCATAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
33750446 ATACCATTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
68 48 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (68 bp):
TCTCATAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
ATG
Found at i:33750944 original size:29 final size:30
Alignment explanation
Indices: 33750910--33750969 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
33750900 TCCTTAACTC
*
33750910 AAACTTTTTCA-AATTACAATTTTGCCCCT
1 AAACTTTTGCATAATTACAATTTTGCCCCT
* *
33750939 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCATAATTACAATTTTGCCCCT
33750969 A
1 A
33750970 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.37
30 17 0.63
ACGTcount: A:0.28, C:0.25, G:0.05, T:0.42
Consensus pattern (30 bp):
AAACTTTTGCATAATTACAATTTTGCCCCT
Found at i:33754517 original size:22 final size:22
Alignment explanation
Indices: 33754491--33754718 Score: 152
Period size: 22 Copynumber: 10.0 Consensus size: 22
33754481 TATATGTTTA
33754491 AGGGTATATTGGTTGTGTTTGG
1 AGGGTATATTGGTTGTGTTTGG
**
33754513 AGGGTATACTTGGTTGTGTTCAG
1 AGGGTATA-TTGGTTGTGTTTGG
* * *
33754536 AGGTTATATATATGGTGGTGTTTTGC
1 AGG--GTATAT-TGGTTGTG-TTTGG
* * * *
33754562 A-AGTACATTTGGTTATGTTCGG
1 AGGGTATA-TTGGTTGTGTTTGG
* *
33754584 AGGGTAAATTGGTTGTGTTTAG
1 AGGGTATATTGGTTGTGTTTGG
*
33754606 AGGGTATACTTGGTTGTGTTCGG
1 AGGGTATA-TTGGTTGTGTTTGG
* *
33754629 AGGTTAAATATATGGTTGTGTTTGA
1 AGGGT--ATAT-TGGTTGTGTTTGG
* * * *
33754654 ATGGTACATTAGTTGTGTTTGA
1 AGGGTATATTGGTTGTGTTTGG
* * **
33754676 AGGGTAAATTGGTTATGTTTCA
1 AGGGTATATTGGTTGTGTTTGG
*
33754698 AGGGTAAATTGGTTGTGTTTG
1 AGGGTATATTGGTTGTGTTTG
33754719 ATGGGTGATA
Statistics
Matches: 159, Mismatches: 36, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
22 78 0.49
23 47 0.30
24 3 0.02
25 28 0.18
26 3 0.02
ACGTcount: A:0.21, C:0.04, G:0.33, T:0.43
Consensus pattern (22 bp):
AGGGTATATTGGTTGTGTTTGG
Found at i:33754650 original size:93 final size:91
Alignment explanation
Indices: 33754490--33754716 Score: 289
Period size: 93 Copynumber: 2.5 Consensus size: 91
33754480 ATATATGTTT
* * *
33754490 AAGGGTATATTGGTTGTGTTTGGAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGGTGGT
1 AAGGGTAAATTGGTTGTGTTTAGAGGGTATACTTGGTTGTGTTCAGAGGTTAAATATATGGTGGT
*
33754555 GTTTTGCAA-GTACATTTGGTTATGTTCG
66 G-TTTG-AAGGTACA-TTAGTTATGTTCG
* * *
33754583 GAGGGTAAATTGGTTGTGTTTAGAGGGTATACTTGGTTGTGTTCGGAGGTTAAATATATGGTTGT
1 AAGGGTAAATTGGTTGTGTTTAGAGGGTATACTTGGTTGTGTTCAGAGGTTAAATATATGGTGGT
* *
33754648 GTTTGAATGGTACATTAGTTGTGTTTG
66 GTTTGAA-GGTACATTAGTTATGTTCG
* *
33754675 AAGGGTAAATTGGTTATGTTTCA-AGGGTA-AATTGGTTGTGTT
1 AAGGGTAAATTGGTTGTGTTT-AGAGGGTATACTTGGTTGTGTT
33754717 TGATGGGTGA
Statistics
Matches: 119, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
91 14 0.12
92 39 0.33
93 66 0.55
ACGTcount: A:0.21, C:0.04, G:0.33, T:0.42
Consensus pattern (91 bp):
AAGGGTAAATTGGTTGTGTTTAGAGGGTATACTTGGTTGTGTTCAGAGGTTAAATATATGGTGGT
GTTTGAAGGTACATTAGTTATGTTCG
Found at i:33756850 original size:17 final size:17
Alignment explanation
Indices: 33756828--33756864 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
33756818 ATGTAGGTTG
33756828 AAGAGCTATTGGTTATT
1 AAGAGCTATTGGTTATT
*
33756845 AAGAGCTGTTGGTTATT
1 AAGAGCTATTGGTTATT
33756862 AAG
1 AAG
33756865 GTAAGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (17 bp):
AAGAGCTATTGGTTATT
Found at i:33767072 original size:29 final size:29
Alignment explanation
Indices: 33767017--33767140 Score: 146
Period size: 29 Copynumber: 4.3 Consensus size: 29
33767007 ATGAGCATGA
* *
33767017 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
33767045 ATATAAATGTGATCTGGGCCTAATGGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
*
33767074 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGATCTGGGCCTAATGGGCC
* * * *
33767103 ATATGAATATTAT-TGGGCTTAATGGGCC
1 ATATAAATGTGATCTGGGCCTAATGGGCC
*
33767131 ATATACATGT
1 ATATAAATGT
33767141 ATGTGAATTT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
28 34 0.41
29 47 0.57
30 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATCTGGGCCTAATGGGCC
Found at i:33773235 original size:16 final size:16
Alignment explanation
Indices: 33773214--33773244 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33773204 GTAACGCCCT
33773214 AAAAATCCCGAAATCC
1 AAAAATCCCGAAATCC
*
33773230 AAAAATCTCGAAATC
1 AAAAATCCCGAAATC
33773245 TTGAATTTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATCCCGAAATCC
Found at i:33774436 original size:8 final size:8
Alignment explanation
Indices: 33774423--33774461 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
33774413 ATCAGCAAAA
33774423 GCCGAAAT
1 GCCGAAAT
33774431 GCCGAAAT
1 GCCGAAAT
*
33774439 GCCGAAAA
1 GCCGAAAT
33774447 GCCGAAAT
1 GCCGAAAT
*
33774455 GTCGAAA
1 GCCGAAA
33774462 AGCTGAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (8 bp):
GCCGAAAT
Found at i:33774444 original size:16 final size:16
Alignment explanation
Indices: 33774423--33774469 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
33774413 ATCAGCAAAA
*
33774423 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
33774439 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
* *
33774455 GTCGAAAAGCTGAAA
1 GCCGAAAAGCCGAAA
33774470 GTTTTGCTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.11
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:33774469 original size:24 final size:24
Alignment explanation
Indices: 33774419--33774469 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
33774409 ATGAATCAGC
*
33774419 AAAAGCCGAAATGCCGAAATGCCG
1 AAAAGCCGAAATGCCGAAAAGCCG
* *
33774443 AAAAGCCGAAATGTCGAAAAGCTG
1 AAAAGCCGAAATGCCGAAAAGCCG
33774467 AAA
1 AAA
33774470 GTTTTGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.47, C:0.20, G:0.24, T:0.10
Consensus pattern (24 bp):
AAAAGCCGAAATGCCGAAAAGCCG
Found at i:33774725 original size:29 final size:28
Alignment explanation
Indices: 33774679--33774753 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 28
33774669 TTGAAAATGA
* *
33774679 ATATGAATATGACTGGGCCTAACGGGCC
1 ATATAAATATGATTGGGCCTAACGGGCC
*
33774707 ATATAAATGTGATTTGGGCCTAACGGGCC
1 ATATAAATATGA-TTGGGCCTAACGGGCC
*
33774736 ATATGAATATGATTGGGC
1 ATATAAATATGATTGGGC
33774754 TTAATGGGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 16 0.39
29 25 0.61
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (28 bp):
ATATAAATATGATTGGGCCTAACGGGCC
Found at i:33775881 original size:24 final size:25
Alignment explanation
Indices: 33775854--33775905 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
33775844 GCCTAGCCTC
33775854 TTTTGAT-AACTGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
*
33775878 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTGATAAACTGGGGCAAAGCCCT
33775903 TTT
1 TTT
33775906 CGCCCTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (25 bp):
TTTTGATAAACTGGGGCAAAGCCCT
Found at i:33775980 original size:11 final size:11
Alignment explanation
Indices: 33775961--33776012 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
33775951 GTATATCATA
33775961 GCATATCATGT
1 GCATATCATGT
*
33775972 GCATCTCA--T
1 GCATATCATGT
*
33775981 ACATATCATGT
1 GCATATCATGT
33775992 GCATATCATGT
1 GCATATCATGT
33776003 -CATATCATGT
1 GCATATCATGT
33776013 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 7 0.20
10 10 0.29
11 18 0.51
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (11 bp):
GCATATCATGT
Found at i:33775987 original size:20 final size:20
Alignment explanation
Indices: 33775953--33776012 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 20
33775943 TCTAATGAGT
33775953 ATATCATAGCATATCATGTGC
1 ATATCATA-CATATCATGTGC
*
33775974 ATCTCATACATATCATGTGC
1 ATATCATACATATCATGTGC
*
33775994 ATATCATGTCATATCATGT
1 ATATCAT-ACATATCATGT
33776013 ATAACAATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
20 18 0.51
21 17 0.49
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
ATATCATACATATCATGTGC
Found at i:33781262 original size:17 final size:18
Alignment explanation
Indices: 33781220--33781268 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33781210 AGTTGAAAAG
33781220 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33781239 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33781256 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33781269 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33782157 original size:40 final size:40
Alignment explanation
Indices: 33782091--33782257 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
33782081 AAATTGAATG
* * *
33782091 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
33782130 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
33782170 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
33782210 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
33782250 ATATCCGG
1 ATATCCGG
33782258 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:33790285 original size:40 final size:40
Alignment explanation
Indices: 33790187--33790390 Score: 263
Period size: 40 Copynumber: 5.1 Consensus size: 40
33790177 TGGATGATAA
* *
33790187 CCGGGCTAAGTCTCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
33790228 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33790268 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33790308 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33790348 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
33790387 CCGG
1 CCGG
33790391 TTAAATCCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 17 0.12
40 100 0.68
41 23 0.16
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:33793059 original size:48 final size:48
Alignment explanation
Indices: 33792944--33793165 Score: 215
Period size: 48 Copynumber: 4.7 Consensus size: 48
33792934 GTAAGATTCT
* * * * *
33792944 AATGCCATATCCCAGATATGGTCTTACATGGGATCACAAATCGAAGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* * * *
33792992 GAT---A-G-CCTAG-CTATGGTCTTACACGATG-TCTCATATCGATGCC
1 AATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCTCATATCGATGCC
* * * *
33793035 AATGCCATATCCCAGATATGGTCTTACATGGGATCACATGTCGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* * *
33793083 AATGCCATGTCCCATACATGGTATTACATGGGATCTCATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* *
33793131 AATGCCATGTCCTAGGCATGGTCTTACATGGGATC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATC
33793166 ACACATAACC
Statistics
Matches: 137, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 103 0.75
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
Found at i:33796314 original size:46 final size:46
Alignment explanation
Indices: 33796264--33796436 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
33796254 TGGTTGAGCA
* *
33796264 TCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
33796310 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
33796357 TCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
33796403 CCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33796437 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.57
47 27 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:33796422 original size:93 final size:93
Alignment explanation
Indices: 33796261--33796431 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
33796251 GGATGGTTGA
* * * * *
33796261 GCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAAT
*
33796326 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
33796354 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATACGAACGCCCGAGCTCGTTGAAT
1 GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAAT
33796419 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
33796432 ACTTAGGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTCAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:33796698 original size:19 final size:20
Alignment explanation
Indices: 33796661--33796698 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33796651 ATAAGGTGGT
33796661 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
33796681 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
33796699 TGGTCGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:33800676 original size:68 final size:67
Alignment explanation
Indices: 33800604--33800753 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
33800594 CATCATGTGT
* * * *
33800604 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
33800666 ATGTAG
62 ATGTAG
** * *
33800672 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
33800737 AG
66 AG
33800739 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
33800754 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:33800709 original size:64 final size:64
Alignment explanation
Indices: 33800628--33800811 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
33800618 AGACATTATG
* *
33800628 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
33800692 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
33800757 AA
63 AA
* * * *
33800759 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
33800812 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:33805223 original size:66 final size:65
Alignment explanation
Indices: 33805096--33805223 Score: 159
Period size: 66 Copynumber: 1.9 Consensus size: 65
33805086 TACTATGTGT
* * * * *
33805096 ACACCATGTAGACAAGAGAGCTATGGGATATATGTAGCTAGGTCGCATCGTGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTCACATCGTGGTACCAAGTGAAG
33805161 G
65 G
* *
33805162 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGTCACAT-CGTGGTACCAAGTG
33805224 TTCACCATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 11 0.21
66 40 0.75
67 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTCACATCGTGGTACCAAGTGAAGG
Found at i:33806331 original size:2 final size:2
Alignment explanation
Indices: 33806324--33806348 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33806314 TCATGACATG
33806324 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
33806349 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:33809656 original size:26 final size:26
Alignment explanation
Indices: 33809627--33809689 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
33809617 AGAGTATGCT
33809627 CCCTGATTATGTACCCTGATGGGTAC
1 CCCTGATTATGTACCCTGATGGGTAC
*
33809653 CCCTAATTATGTACCCTGATGGGTAC
1 CCCTGATTATGTACCCTGATGGGTAC
33809679 CCCTGATTATG
1 CCCTGATTATG
33809690 AATTGACAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.32
Consensus pattern (26 bp):
CCCTGATTATGTACCCTGATGGGTAC
Found at i:33816265 original size:29 final size:28
Alignment explanation
Indices: 33816231--33816333 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
33816221 TACTCAATCA
*
33816231 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
33816260 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
33816289 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
33816318 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
33816334 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:33820211 original size:18 final size:18
Alignment explanation
Indices: 33820171--33820236 Score: 69
Period size: 18 Copynumber: 3.7 Consensus size: 18
33820161 CTTGGCCCAT
* * *
33820171 TGCAGTAAAAGTAAACGG
1 TGCAGTAACAGTAATCAG
* *
33820189 AGCAGTAACAGTAATTAG
1 TGCAGTAACAGTAATCAG
*
33820207 TGCAGCAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
*
33820225 TACAGTAACAGT
1 TGCAGTAACAGT
33820237 TTAAACAGTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:33820638 original size:26 final size:26
Alignment explanation
Indices: 33820584--33820681 Score: 110
Period size: 26 Copynumber: 3.7 Consensus size: 26
33820574 CCTCACATAG
*
33820584 GGGCAAAACAGTCAATTTACCATGCAA
1 GGGCAAAACAGTCATTTTACCAT-CAA
***
33820611 GGGCATTTCAGTCATTTTACCTAT-AA
1 GGGCAAAACAGTCATTTTACC-ATCAA
33820637 GGGCAAAACAGTCATTTTACCA-CATA
1 GGGCAAAACAGTCATTTTACCATCA-A
*
33820663 GGGCAAAATAGTCATTTTA
1 GGGCAAAACAGTCATTTTA
33820682 TCGATTACGG
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.03
26 39 0.65
27 17 0.28
28 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (26 bp):
GGGCAAAACAGTCATTTTACCATCAA
Found at i:33824634 original size:16 final size:16
Alignment explanation
Indices: 33824615--33824645 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33824605 CTTCCTCACT
33824615 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33824631 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33824646 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33824651 original size:20 final size:20
Alignment explanation
Indices: 33824612--33824651 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33824602 AAACTTCCTC
* *
33824612 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33824632 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33824652 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33824762 original size:23 final size:24
Alignment explanation
Indices: 33824724--33824768 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
33824714 TTTGCTCTTC
*
33824724 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
33824748 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
33824769 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:33825025 original size:55 final size:53
Alignment explanation
Indices: 33824840--33825091 Score: 183
Period size: 55 Copynumber: 4.8 Consensus size: 53
33824830 CGGGTACCTT
* * * * * * *
33824840 ACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT--TTGA--AACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTGATGAACTC
* * * *
33824889 ACCATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTGATGAACTC
* * *
33824942 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTGATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTGAT-G-AACTC
* * *** * *
33824997 ATCAATGCCATGTCTTAACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTGATG-AA-CTC
* * * *
33825051 ACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
33825092 AAACCCTAAT
Statistics
Matches: 163, Mismatches: 30, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
49 36 0.22
51 2 0.01
52 2 0.01
53 45 0.28
54 8 0.05
55 68 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTGATGAACTC
Found at i:33827511 original size:27 final size:27
Alignment explanation
Indices: 33827409--33827513 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
33827399 AATACTTTAG
* *
33827409 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
* ** *
33827436 CTTGTAAAATTACC-AAATTACCCCCGA
1 TTTACAAAATTACCGAAA-TACCCTCGA
* ***
33827463 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACCGAAATACCCTCGA
**
33827490 TTTACAAAATTATTGAAATACCCT
1 TTTACAAAATTACCGAAATACCCT
33827514 TGTAGGGTAG
Statistics
Matches: 56, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (27 bp):
TTTACAAAATTACCGAAATACCCTCGA
Found at i:33827527 original size:27 final size:27
Alignment explanation
Indices: 33827504--33827638 Score: 191
Period size: 27 Copynumber: 5.0 Consensus size: 27
33827494 CAAAATTATT
*
33827504 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAATTACC
*
33827531 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
*
33827558 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
33827585 AAAATACCCTTGTAGGGCAGAATTACC
1 GAAATACCCTTGTAGGGTAGAATTACC
* *
33827612 GAGATACCCTTGTGGGGTA-ATATTACC
1 GAAATACCCTTGTAGGGTAGA-ATTACC
33827639 ATTTTGCCCT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 95 0.99
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAATTACC
Found at i:33828214 original size:6 final size:6
Alignment explanation
Indices: 33828203--33828330 Score: 68
Period size: 6 Copynumber: 20.8 Consensus size: 6
33828193 TGATTCTGGG
* * *
33828203 CTGATT CTGATT CT-ATT ACCTGATAT -TGATT CTAATT CT-ATCAC CTAATT
1 CTGATT CTGATT CTGATT --CTGAT-T CTGATT CTGATT CTGAT--T CTGATT
* * * *
33828253 CTGATT TTAATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT TTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
* *
33828302 CTGATT CTCATT TTGATT CTAGA-T CTGAT
1 CTGATT CTGATT CTGATT CT-GATT CTGAT
33828331 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
5 9 0.10
6 69 0.74
7 9 0.10
8 5 0.05
9 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:33828257 original size:25 final size:26
Alignment explanation
Indices: 33828203--33828266 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
33828193 TGATTCTGGG
* * *
33828203 CTGATTCTGATTCTATTACCTGATAT
1 CTGATTCTAATTCTATCACCTAATAT
33828229 -TGATTCTAATTCTATCACCTAAT-T
1 CTGATTCTAATTCTATCACCTAATAT
*
33828253 CTGATTTTAATTCT
1 CTGATTCTAATTCT
33828267 GATTCTGATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 32 0.97
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (26 bp):
CTGATTCTAATTCTATCACCTAATAT
Found at i:33828271 original size:37 final size:37
Alignment explanation
Indices: 33828229--33828309 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
33828219 TACCTGATAT
33828229 TGATTCTAATTCTATCACCTAATTCTGATTTTAATTC
1 TGATTCTAATTCTATCACCTAATTCTGATTTTAATTC
* * * *
33828266 TGATTCTGATTCTGTCACCTGATTCTGATTTTGATTC
1 TGATTCTAATTCTATCACCTAATTCTGATTTTAATTC
33828303 TGATTCT
1 TGATTCT
33828310 CATTTTGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.21, C:0.19, G:0.11, T:0.49
Consensus pattern (37 bp):
TGATTCTAATTCTATCACCTAATTCTGATTTTAATTC
Found at i:33828273 original size:18 final size:18
Alignment explanation
Indices: 33828250--33828330 Score: 85
Period size: 18 Copynumber: 4.4 Consensus size: 18
33828240 CTATCACCTA
*
33828250 ATTCTGATTTTAATTCTG
1 ATTCTGATTTTGATTCTG
* *
33828268 ATTCTGATTCTG-TCACCTG
1 ATTCTGATTTTGAT--TCTG
33828287 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
*
33828305 ATTCTCATTTTGATTCTAG
1 ATTCTGATTTTGATTCT-G
33828324 A-TCTGAT
1 ATTCTGAT
33828331 AATGTTTCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
17 1 0.02
18 34 0.65
19 16 0.31
20 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.51
Consensus pattern (18 bp):
ATTCTGATTTTGATTCTG
Found at i:33830870 original size:27 final size:28
Alignment explanation
Indices: 33830805--33830874 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
33830795 AAATTTGTAC
33830805 AGCACTAAGTGTGCGAGTTGGATCATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33830833 AGCACTAAGTGTGCGAGTT-GATTATAT
1 AGCACTAAGTGTGCGAGTTGGATCATAT
*
33830860 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
33830875 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGGATCATAT
Found at i:33830885 original size:27 final size:27
Alignment explanation
Indices: 33830805--33830886 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
33830795 AAATTTGTAC
* *
33830805 AGCACTAAGTGTGCGAGTTGGA-TCATAT
1 AGCACTAAGTGTGCGAGCT-CACT-ATAT
* * *
33830833 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
33830860 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
33830887 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.56
28 20 0.42
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:33839009 original size:40 final size:40
Alignment explanation
Indices: 33838911--33839114 Score: 263
Period size: 40 Copynumber: 5.1 Consensus size: 40
33838901 TGGATGATAA
* *
33838911 CCGGGCTAAGTCTCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
33838952 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
33838992 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33839032 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
33839072 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
33839111 CCGG
1 CCGG
33839115 TTAAATCCTG
Statistics
Matches: 146, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 17 0.12
40 100 0.68
41 23 0.16
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:33841779 original size:48 final size:48
Alignment explanation
Indices: 33841664--33841885 Score: 215
Period size: 48 Copynumber: 4.7 Consensus size: 48
33841654 GTAAGATTCT
* * * * *
33841664 AATGCCATATCCCAGATATGGTCTTACATGGGATCACAAATCGAAGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* * * *
33841712 GAT---A-G-CCTAG-CTATGGTCTTACACGATG-TCTCATATCGATGCC
1 AATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCTCATATCGATGCC
* * * *
33841755 AATGCCATATCCCAGATATGGTCTTACATGGGATCACATGTCGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* * *
33841803 AATGCCATGTCCCATACATGGTATTACATGGGATCTCATAACGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
* *
33841851 AATGCCATGTCCTAGGCATGGTCTTACATGGGATC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGATC
33841886 ACACATAACC
Statistics
Matches: 137, Mismatches: 28, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
43 30 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 103 0.75
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (48 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCGATGCC
Found at i:33845027 original size:46 final size:46
Alignment explanation
Indices: 33844977--33845147 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
33844967 TGGTTGAGCA
*
33844977 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
33845023 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
33845069 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
33845115 CCCGAGCTCGTTGA-TTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
33845148 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 17
0.78 0.10 0.13
Matches are distributed among these distances:
42 6 0.06
44 3 0.03
45 25 0.24
46 55 0.53
47 7 0.07
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:33845140 original size:92 final size:92
Alignment explanation
Indices: 33844974--33845142 Score: 277
Period size: 92 Copynumber: 1.8 Consensus size: 92
33844964 GGATGGTTGA
* *
33844974 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
33845039 TGAGTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCGAGTTCGTGAGATGTAACTAG
* * *
33845066 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGA-T
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
33845130 TGAGTCCGAGTTC
66 TGAGT-CGAGTTC
33845143 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 6 0.08
92 65 0.92
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:33845407 original size:19 final size:20
Alignment explanation
Indices: 33845370--33845407 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33845360 ATAAGGTGGT
33845370 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
33845390 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
33845408 NTATTAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:33846030 original size:39 final size:40
Alignment explanation
Indices: 33845950--33846115 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
33845940 AAATTGAATG
* * * *
33845950 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGATATT
* *
33845989 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGATATT
* * *
33846028 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGATATT
* *
33846068 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GAT-ATT
33846108 ATATCCGG
1 ATATCCGG
33846116 TTATATTCCG
Statistics
Matches: 107, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
38 3 0.03
39 45 0.42
40 57 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGATATT
Found at i:33853113 original size:17 final size:18
Alignment explanation
Indices: 33853071--33853119 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
33853061 AGTTGAAAAG
33853071 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
33853090 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
33853107 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
33853120 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:33854007 original size:40 final size:40
Alignment explanation
Indices: 33853941--33854107 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
33853931 AAATTGAATG
* * *
33853941 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
33853980 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
33854020 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
33854060 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
33854100 ATATCCGG
1 ATATCCGG
33854108 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:33857471 original size:71 final size:71
Alignment explanation
Indices: 33857387--33857550 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
33857377 CGATTTGTCT
33857387 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
33857452 CTTTCA
66 CTTTCA
* * *
33857458 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGGATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
33857523 CTTTCA
66 CTTTCA
33857529 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
33857551 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:33857588 original size:71 final size:70
Alignment explanation
Indices: 33857387--33857584 Score: 242
Period size: 71 Copynumber: 2.8 Consensus size: 70
33857377 CGATTTGTCT
* * * *
33857387 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTT-GGAATCACGCATGCGACCCAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGG-ATCACACATGCGACCTAGCTACATTTA
33857451 TCTTTCA
64 TCTTTCA
* * * *
33857458 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGGATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGGATCACACATGCGACCTAGCTACATTTAT
33857523 CTTTCA
65 CTTTCA
* *
33857529 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGGATCACACATGCGACCTAGCTAC
33857585 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 91 0.78
72 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGGATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:33859730 original size:27 final size:27
Alignment explanation
Indices: 33859698--33860035 Score: 208
Period size: 27 Copynumber: 12.7 Consensus size: 27
33859688 CTCAATTTGT
*
33859698 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33859725 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
33859752 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33859779 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
33859806 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
33859833 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCAAATTACCCTCGA-TTTAC
** *
33859860 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * * **
33859886 GAAATTACTAAAATA-CCTCCAGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
33859912 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33859938 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
* *
33859965 AAAATTACCGAAA-TACCCTAG-TTTGC
1 AAAATTACC-AAATTACCCTCGATTTAC
* ** *
33859991 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
33860018 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
33860036 CTGCAGGGTA
Statistics
Matches: 257, Mismatches: 42, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
25 5 0.02
26 72 0.28
27 176 0.68
28 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:33859756 original size:54 final size:54
Alignment explanation
Indices: 33859711--33859883 Score: 267
Period size: 54 Copynumber: 3.2 Consensus size: 54
33859701 ATTACCAAAG
* *
33859711 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
33859765 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
33859819 TACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
33859873 TACCCTCGATT
1 TACCCTCGATT
33859884 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 106 0.99
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:33859801 original size:81 final size:81
Alignment explanation
Indices: 33859711--33859883 Score: 294
Period size: 81 Copynumber: 2.1 Consensus size: 81
33859701 ATTACCAAAG
33859711 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
33859775 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
33859792 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
33859857 TACAAAATTACCATTT
66 TACAAAATTACCATTT
33859873 TACCCTCGATT
1 TACCCTCGATT
33859884 ATGAAATTAC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
81 86 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:33859982 original size:53 final size:51
Alignment explanation
Indices: 33859882--33860036 Score: 148
Period size: 53 Copynumber: 2.9 Consensus size: 51
33859872 TTACCCTCGA
* * * *
33859882 TTATGAAATTACTAAAATACCTCCAGTTGTAAAATTACCAAAGTACCCCGGT
1 TTATAAAATTACTAAAATACCTCGATTTGTAAAATTACCAAA-TACCCCAGT
** *
33859934 TTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTAGT
1 TTATAAAATTACTAAAATA-CCTCGATTTGTAAAATTACC-AAATACCCCAGT
** * ***
33859987 TTGCAAAATTACTGAAATACCCTCGATCAATAAAATTACCAAAATACCCC
1 TTATAAAATTACTAAAATA-CCTCGATTTGTAAAATTACC-AAATACCCC
33860037 TGCAGGGTAG
Statistics
Matches: 84, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
52 16 0.19
53 65 0.77
54 3 0.04
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (51 bp):
TTATAAAATTACTAAAATACCTCGATTTGTAAAATTACCAAATACCCCAGT
Found at i:33860050 original size:27 final size:27
Alignment explanation
Indices: 33860020--33860330 Score: 347
Period size: 27 Copynumber: 11.3 Consensus size: 27
33860010 CGATCAATAA
* *
33860020 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33860047 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33860074 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33860101 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33860128 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33860155 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* *
33860190 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33860217 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
33860244 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
33860271 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33860298 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
33860324 AATTACC
1 AATTACC
33860331 ATTTTGCCCT
Statistics
Matches: 245, Mismatches: 30, Indels: 19
0.83 0.10 0.06
Matches are distributed among these distances:
26 18 0.07
27 199 0.81
28 3 0.01
34 3 0.01
35 22 0.09
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33860243 original size:143 final size:143
Alignment explanation
Indices: 33860028--33860295 Score: 412
Period size: 143 Copynumber: 1.9 Consensus size: 143
33860018 AAAATTACCA
*
33860028 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
** * * * *
33860093 TAGGGTAGAATTA-TCGCAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGTAGAA
33860157 ATACAGAAATACAG
130 ATACAGAAATACAG
* * *
33860171 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
* *
33860236 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGT
33860296 GGAATTACCA
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
143 111 0.99
144 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGTAGAAA
TACAGAAATACAG
Found at i:33860257 original size:89 final size:89
Alignment explanation
Indices: 33860072--33860245 Score: 312
Period size: 89 Copynumber: 2.0 Consensus size: 89
33860062 CTTGTAGGGT
* * *
33860072 AGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
33860137 AATACCCCTATAGGGTAGAAATAC
66 AATACCCCTATAGGGTAGAAATAC
33860161 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
*
33860226 AATACCCCTGTAGGGTAGAA
66 AATACCCCTATAGGGTAGAA
33860246 TTACTAAAAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (89 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTATAGGGTAGAAATAC
Found at i:33860284 original size:116 final size:116
Alignment explanation
Indices: 33860045--33860272 Score: 357
Period size: 116 Copynumber: 2.0 Consensus size: 116
33860035 CCTGCAGGGT
* * * * *
33860045 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
33860110 AATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
* *
33860161 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
33860226 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
33860273 TTACTAAAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 101 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (116 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
Found at i:33860808 original size:22 final size:22
Alignment explanation
Indices: 33860756--33860820 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
33860746 TTAAAGCCTT
* *
33860756 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
33860778 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
33860800 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
33860821 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:33861066 original size:27 final size:26
Alignment explanation
Indices: 33860978--33861079 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
33860968 ATTCTGTTAA
* * *
33860978 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
33861005 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
33861032 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
33861059 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
33861080 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:33861245 original size:6 final size:6
Alignment explanation
Indices: 33861236--33861343 Score: 107
Period size: 6 Copynumber: 17.8 Consensus size: 6
33861226 CTGTCACGTA
* *
33861236 ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
33861285 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
33861333 ATTCTG ATTCT
1 ATTCTG ATTCT
33861344 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
5 6 0.07
6 72 0.85
7 5 0.06
8 2 0.02
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:33861350 original size:30 final size:30
Alignment explanation
Indices: 33861211--33861343 Score: 187
Period size: 31 Copynumber: 4.4 Consensus size: 30
33861201 TTGCATTCAC
* *
33861211 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
33861242 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
33861273 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
33861303 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
33861333 ATTCTGATTCT
1 ATTCTGATTCT
33861344 CATTTTGGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
29 1 0.01
30 44 0.46
31 49 0.52
32 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:33861361 original size:30 final size:30
Alignment explanation
Indices: 33861211--33861364 Score: 168
Period size: 30 Copynumber: 5.1 Consensus size: 30
33861201 TTGCATTCAC
* * *
33861211 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
*
33861242 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
33861273 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
* **
33861303 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
33861333 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
33861363 AT
1 AT
33861365 AATGTTTCTT
Statistics
Matches: 110, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.01
30 56 0.51
31 53 0.48
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:33863373 original size:27 final size:27
Alignment explanation
Indices: 33863341--33863678 Score: 210
Period size: 27 Copynumber: 12.7 Consensus size: 27
33863331 CTCAATTTGT
*
33863341 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33863368 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
33863395 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33863422 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
33863449 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
33863476 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCAAATTACCCTCGA-TTTAC
** *
33863503 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * **
33863529 GAAATTACTAAAATA-CCTC-AGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
33863554 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33863580 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
33863607 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
33863634 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
33863661 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
33863679 CTGCAGGGTA
Statistics
Matches: 259, Mismatches: 38, Indels: 28
0.80 0.12 0.09
Matches are distributed among these distances:
24 1 0.00
25 20 0.08
26 37 0.14
27 196 0.76
28 5 0.02
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:33863399 original size:54 final size:54
Alignment explanation
Indices: 33863354--33863526 Score: 267
Period size: 54 Copynumber: 3.2 Consensus size: 54
33863344 ATTACCAAAG
* *
33863354 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
33863408 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
33863462 TACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
33863516 TACCCTCGATT
1 TACCCTCGATT
33863527 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 106 0.99
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:33863444 original size:81 final size:81
Alignment explanation
Indices: 33863354--33863526 Score: 294
Period size: 81 Copynumber: 2.1 Consensus size: 81
33863344 ATTACCAAAG
33863354 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
33863418 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
33863435 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
33863500 TACAAAATTACCATTT
66 TACAAAATTACCATTT
33863516 TACCCTCGATT
1 TACCCTCGATT
33863527 ATGAAATTAC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
81 86 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:33863693 original size:27 final size:27
Alignment explanation
Indices: 33863663--33863972 Score: 347
Period size: 27 Copynumber: 11.3 Consensus size: 27
33863653 CGATCAATAA
* *
33863663 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33863690 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33863717 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33863744 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33863770 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33863797 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* *
33863832 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33863859 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
33863886 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
33863913 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33863940 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
33863966 AATTACC
1 AATTACC
33863973 ATTTTGCCCT
Statistics
Matches: 245, Mismatches: 28, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
26 42 0.17
27 175 0.71
28 3 0.01
34 3 0.01
35 22 0.09
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33863694 original size:54 final size:53
Alignment explanation
Indices: 33863636--33863810 Score: 165
Period size: 54 Copynumber: 3.3 Consensus size: 53
33863626 CAGTTTGCAA
*
33863636 AATTACTGAAATACCCTCGATCA-ATAAAATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCTCG-T-AGATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * *
33863690 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTCGTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * * **
33863744 AATTATCGCAATACCCT-GTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTCGTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* *
33863797 AAATACAGAAATAC
1 AATTACCGAAATAC
33863811 AGAAATACCC
Statistics
Matches: 106, Mismatches: 13, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.43
54 59 0.56
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (53 bp):
AATTACCGAAATACCCTCGTAGATAAAATTACCAAAATACCCCTGCAGGGTAG
Found at i:33863845 original size:142 final size:143
Alignment explanation
Indices: 33863671--33863937 Score: 412
Period size: 142 Copynumber: 1.9 Consensus size: 143
33863661 AAAATTACCA
*
33863671 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
** * * *
33863736 TAGGGTAGAATTA-TCGCAATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGTAGAA
33863799 ATACAGAAATACAG
130 ATACAGAAATACAG
* * *
33863813 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
* *
33863878 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGT
33863938 GGAATTACCA
Statistics
Matches: 112, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
142 78 0.70
143 34 0.30
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTATAGGGTAGAAA
TACAGAAATACAG
Found at i:33863849 original size:62 final size:61
Alignment explanation
Indices: 33863753--33863914 Score: 194
Period size: 62 Copynumber: 2.8 Consensus size: 61
33863743 GAATTATCGC
33863753 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACAGA
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACAGA
* * * * *
33863814 AATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATAC---
1 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACAGA
** *
33863873 ----CCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAA
33863915 TTACTAAAAT
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
54 36 0.40
61 4 0.04
62 49 0.55
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (61 bp):
AATACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACAGAAATACAGA
Found at i:33863849 original size:115 final size:116
Alignment explanation
Indices: 33863688--33863914 Score: 357
Period size: 115 Copynumber: 2.0 Consensus size: 116
33863678 CCTGCAGGGT
* * * * *
33863688 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* *
33863753 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
* *
33863803 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
33863868 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
33863915 TTACTAAAAT
Statistics
Matches: 101, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
115 62 0.61
116 39 0.39
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (116 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
Found at i:33863899 original size:89 final size:88
Alignment explanation
Indices: 33863715--33863887 Score: 310
Period size: 89 Copynumber: 2.0 Consensus size: 88
33863705 CTTGTAGGGT
* *
33863715 AGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
33863780 ATACCCCTATAGGGTAGAAATAC
66 ATACCCCTATAGGGTAGAAATAC
33863803 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAGAATTACCGA
*
33863868 AATACCCCTGTAGGGTAGAA
65 AATACCCCTATAGGGTAGAA
33863888 TTACTAAAAT
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
88 40 0.49
89 41 0.51
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (88 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
ATACCCCTATAGGGTAGAAATAC
Found at i:33864450 original size:22 final size:22
Alignment explanation
Indices: 33864398--33864462 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
33864388 TTAAAGCCTT
* *
33864398 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
33864420 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
33864442 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
33864463 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:33864708 original size:27 final size:26
Alignment explanation
Indices: 33864620--33864721 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
33864610 ATTCTGTTAA
* * *
33864620 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
33864647 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
33864674 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
33864701 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
33864722 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:33864887 original size:6 final size:6
Alignment explanation
Indices: 33864878--33864984 Score: 139
Period size: 6 Copynumber: 17.8 Consensus size: 6
33864868 CTGTCACGTA
* *
33864878 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
*
33864926 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTTTG -TTACTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
33864974 ATTCTG ATTCT
1 ATTCTG ATTCT
33864985 ATTTTGGTTC
Statistics
Matches: 89, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
5 6 0.07
6 78 0.88
7 5 0.06
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:33864917 original size:30 final size:30
Alignment explanation
Indices: 33864853--33864984 Score: 201
Period size: 30 Copynumber: 4.4 Consensus size: 30
33864843 TTGCATTCAC
* *
33864853 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
33864884 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
33864914 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
33864944 ATTCTGATTCTGATTTTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
33864974 ATTCTGATTCT
1 ATTCTGATTCT
33864985 ATTTTGGTTC
Statistics
Matches: 95, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 75 0.79
31 20 0.21
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:33867011 original size:27 final size:27
Alignment explanation
Indices: 33866979--33867315 Score: 210
Period size: 27 Copynumber: 12.7 Consensus size: 27
33866969 CTCAATTTGT
*
33866979 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33867006 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
33867033 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33867060 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ***
33867087 AGAATTA-CTTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
33867113 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCAAATTACCCTCGA-TTTAC
** *
33867140 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * **
33867166 GAAATTACTAAAATA-CCTC-AGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
33867191 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33867217 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
33867244 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
33867271 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
33867298 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
33867316 CTGCAGGGTA
Statistics
Matches: 259, Mismatches: 36, Indels: 30
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.00
25 20 0.08
26 61 0.24
27 172 0.66
28 5 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:33867037 original size:54 final size:54
Alignment explanation
Indices: 33866992--33867163 Score: 267
Period size: 54 Copynumber: 3.2 Consensus size: 54
33866982 ATTACCAAAG
* *
33866992 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * *
33867046 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTA-CTTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
33867099 TACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
33867153 TACCCTCGATT
1 TACCCTCGATT
33867164 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
52 1 0.01
53 47 0.44
54 59 0.55
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:33867129 original size:80 final size:81
Alignment explanation
Indices: 33866992--33867163 Score: 285
Period size: 80 Copynumber: 2.1 Consensus size: 81
33866982 ATTACCAAAG
33866992 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
33867056 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
33867073 TACCCTCGATTTACAGAATTA-CTTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
33867137 TACAAAATTACCATTT
66 TACAAAATTACCATTT
33867153 TACCCTCGATT
1 TACCCTCGATT
33867164 ATGAAATTAC
Statistics
Matches: 86, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
80 64 0.74
81 22 0.26
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:33867330 original size:27 final size:27
Alignment explanation
Indices: 33867300--33867609 Score: 356
Period size: 27 Copynumber: 11.3 Consensus size: 27
33867290 CGATCAATAA
* *
33867300 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33867327 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33867354 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33867381 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33867407 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33867434 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* *
33867469 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33867496 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
33867523 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
33867550 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33867577 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
33867603 AATTACC
1 AATTACC
33867610 ATTTTGCCCT
Statistics
Matches: 247, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
26 42 0.17
27 176 0.71
28 3 0.01
34 3 0.01
35 23 0.09
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33867482 original size:142 final size:143
Alignment explanation
Indices: 33867308--33867574 Score: 421
Period size: 142 Copynumber: 1.9 Consensus size: 143
33867298 AAAATTACCA
*
33867308 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
** * * *
33867373 TAGGGTAGAATTA-TCGCAATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
33867436 ATACAGAAATACAG
130 ATACAGAAATACAG
* * *
33867450 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
*
33867515 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGT
33867575 GGAATTACCA
Statistics
Matches: 113, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
142 78 0.69
143 35 0.31
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAA
TACAGAAATACAG
Found at i:33867486 original size:62 final size:61
Alignment explanation
Indices: 33867390--33867509 Score: 195
Period size: 62 Copynumber: 2.0 Consensus size: 61
33867380 GAATTATCGC
33867390 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATACAGA
1 AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATACAGA
* * * *
33867451 AATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATAC
1 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATAC
33867510 CCCTGTAGGG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
61 4 0.07
62 50 0.93
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.22
Consensus pattern (61 bp):
AATACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATACAGA
Found at i:33867486 original size:115 final size:116
Alignment explanation
Indices: 33867325--33867551 Score: 348
Period size: 115 Copynumber: 2.0 Consensus size: 116
33867315 CCTGCAGGGT
* * * * *
33867325 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
33867390 AATA-CCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
* *
33867440 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
33867505 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
33867552 TTACTAAAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
115 62 0.62
116 38 0.38
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (116 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
Found at i:33867536 original size:89 final size:88
Alignment explanation
Indices: 33867352--33867524 Score: 319
Period size: 89 Copynumber: 2.0 Consensus size: 88
33867342 CTTGTAGGGT
* *
33867352 AGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
33867417 ATACCCCTGTAGGGTAGAAATAC
66 ATACCCCTGTAGGGTAGAAATAC
33867440 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAGAATTACCGA
33867505 AATACCCCTGTAGGGTAGAA
65 AATACCCCTGTAGGGTAGAA
33867525 TTACTAAAAT
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
88 40 0.49
89 42 0.51
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (88 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTGTAGGGTAGAATTACCGAA
ATACCCCTGTAGGGTAGAAATAC
Found at i:33868087 original size:22 final size:22
Alignment explanation
Indices: 33868035--33868099 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
33868025 TTAAAGCCTT
* *
33868035 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
33868057 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
33868079 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
33868100 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:33868345 original size:27 final size:26
Alignment explanation
Indices: 33868257--33868358 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
33868247 ATTCTGTTAA
* * *
33868257 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
33868284 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
33868311 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
33868338 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
33868359 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:33868523 original size:6 final size:6
Alignment explanation
Indices: 33868514--33868618 Score: 121
Period size: 6 Copynumber: 17.8 Consensus size: 6
33868504 CTGTCACGTA
* *
33868514 ATTCTG ATTCTG ATTCTG ATTCTG -TACTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
33868561 ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG ATT-TG -TTACTG ATTCTG
1 ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG
33868608 ATTCTG ATTCT
1 ATTCTG ATTCT
33868619 CATTTTGGTT
Statistics
Matches: 85, Mismatches: 6, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
4 2 0.02
5 8 0.09
6 71 0.84
7 3 0.04
8 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:33868554 original size:29 final size:30
Alignment explanation
Indices: 33868489--33868618 Score: 194
Period size: 29 Copynumber: 4.4 Consensus size: 30
33868479 TTGCATTCAC
* *
33868489 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
33868520 ATTCTGATTCTGATTCTG-TACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
33868549 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
*
33868579 ATTCTGATTCTGATT-TGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
33868608 ATTCTGATTCT
1 ATTCTGATTCT
33868619 CATTTTGGTT
Statistics
Matches: 93, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
28 1 0.01
29 48 0.52
30 26 0.28
31 18 0.19
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:33870641 original size:27 final size:27
Alignment explanation
Indices: 33870609--33870943 Score: 199
Period size: 27 Copynumber: 12.7 Consensus size: 27
33870599 CTCAATTTGT
*
33870609 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33870636 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
33870663 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33870690 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
33870717 AGAATT---ATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
33870741 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCAAATTACCCTCGA-TTTAC
** *
33870768 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * * **
33870794 GAAATTACTAAAATA-CCTCCAGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
33870820 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * **
33870846 AAAATTACCCAA-TATCCTCGATTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
*
33870872 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
33870899 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
33870926 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
33870944 CTGCAGGGTA
Statistics
Matches: 255, Mismatches: 38, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
24 23 0.09
25 9 0.04
26 64 0.25
27 154 0.60
28 5 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:33870667 original size:54 final size:54
Alignment explanation
Indices: 33870622--33870791 Score: 258
Period size: 54 Copynumber: 3.2 Consensus size: 54
33870612 ATTACCAAAG
* *
33870622 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* *
33870676 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATT---ATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
33870727 TACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
33870781 TACCCTCGATT
1 TACCCTCGATT
33870792 ATGAAATTAC
Statistics
Matches: 105, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
50 1 0.01
51 46 0.44
54 58 0.55
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:33870756 original size:78 final size:79
Alignment explanation
Indices: 33870622--33870791 Score: 272
Period size: 78 Copynumber: 2.1 Consensus size: 79
33870612 ATTACCAAAG
33870622 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTA-C-TTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
33870686 TTATAGAATTACCATTT
63 TTACAAAATTACCATTT
*
33870703 TACCCTCGATTTACAGAATTA-TTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTA
1 TACCCTCGATTTACAGAATTACTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTA
33870767 CAAAATTACCATTT
66 CAAAATTACCATTT
33870781 TACCCTCGATT
1 TACCCTCGATT
33870792 ATGAAATTAC
Statistics
Matches: 85, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
78 63 0.74
79 1 0.01
81 21 0.25
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (79 bp):
TACCCTCGATTTACAGAATTACTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTA
CAAAATTACCATTT
Found at i:33870837 original size:52 final size:53
Alignment explanation
Indices: 33870781--33870891 Score: 122
Period size: 52 Copynumber: 2.1 Consensus size: 53
33870771 ATTACCATTT
*
33870781 TACCCTC-GATTATGAAATTACTAAAATA-CCTCCAGTTGTAAAATTACC-AAA
1 TACCCTCGGATTATAAAATTAC-AAAATATCCTCCAGTTGTAAAATTACCGAAA
* ** * *
33870832 GTACCC-CGGTTTATAAAATTACCCAATATCCTCGATTTGTAAAATTACCGAAA
1 -TACCCTCGGATTATAAAATTACAAAATATCCTCCAGTTGTAAAATTACCGAAA
33870885 TACCCTC
1 TACCCTC
33870892 AGTTTGCAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
51 5 0.10
52 40 0.82
53 4 0.08
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (53 bp):
TACCCTCGGATTATAAAATTACAAAATATCCTCCAGTTGTAAAATTACCGAAA
Found at i:33870958 original size:27 final size:27
Alignment explanation
Indices: 33870928--33871237 Score: 356
Period size: 27 Copynumber: 11.3 Consensus size: 27
33870918 CGATCAATAA
* *
33870928 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33870955 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33870982 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
33871009 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33871036 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
33871063 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* *
33871098 AATTATCGCAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
33871124 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
33871151 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
33871178 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
33871205 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
33871231 AATTACC
1 AATTACC
33871238 ATTTTGCCCT
Statistics
Matches: 247, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
26 42 0.17
27 176 0.71
28 3 0.01
34 3 0.01
35 23 0.09
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:33870959 original size:54 final size:53
Alignment explanation
Indices: 33870901--33871076 Score: 167
Period size: 54 Copynumber: 3.3 Consensus size: 53
33870891 CAGTTTGCAA
*
33870901 AATTACTGAAATACCCTCGATCA-ATAAAATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCTCG-T-AGATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * *
33870955 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTCGTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * * *
33871009 AATTATCGCAATACCC-CTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTC-GTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* *
33871063 AAATACAGAAATAC
1 AATTACCGAAATAC
33871077 AGAAATACCC
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 104 0.98
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (53 bp):
AATTACCGAAATACCCTCGTAGATAAAATTACCAAAATACCCCTGCAGGGTAG
Found at i:33871146 original size:142 final size:143
Alignment explanation
Indices: 33870936--33871202 Score: 430
Period size: 142 Copynumber: 1.9 Consensus size: 143
33870926 AAAATTACCA
33870936 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
** * * *
33871001 TAGGGTAGAATTA-TCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
33871065 ATACAGAAATACAG
130 ATACAGAAATACAG
* * *
33871079 AAATACCCCTGTAGGGTAGAATTATCGCAATACCC-TGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
*
33871143 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGT
33871203 GGAATTACCA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
142 81 0.71
143 33 0.29
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAA
TACAGAAATACAG
Found at i:33871148 original size:115 final size:116
Alignment explanation
Indices: 33870953--33871179 Score: 348
Period size: 115 Copynumber: 2.0 Consensus size: 116
33870943 CCTGCAGGGT
* * * * *
33870953 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
33871018 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
* *
33871069 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
33871133 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
33871180 TTACTAAAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
115 63 0.63
116 37 0.37
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.23
Consensus pattern (116 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
Done.