Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 119 of 318
Found at i:36468600 original size:58 final size:59
Alignment explanation
Indices: 36468536--36468651 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 59
36468526 ATAACTTTAA
* * * *
36468536 TATTAAATTAATATAAT-TCTTATC-AAGATAAATATTATATTGAATTTAATATTAAATC
1 TATTAAATTAATACAATAT-TTATCTAACATAAATATTAAATTAAATTTAATATTAAATC
36468594 TATTAAATTAATACAATATTTATCTATAACATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAATACAATATTTATC--TAACATAAATATTAAATTAAATTTAATATTAA
36468652 TATAATCACT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
58 21 0.42
59 1 0.02
61 28 0.56
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (59 bp):
TATTAAATTAATACAATATTTATCTAACATAAATATTAAATTAAATTTAATATTAAATC
Found at i:36475525 original size:40 final size:40
Alignment explanation
Indices: 36475451--36475672 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
36475441 AACCCAAGTA
* *
36475451 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
36475490 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
36475530 CCTTCGGGACTTAGCTCGGATATAGTTACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
36475570 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36475610 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
36475650 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36475673 CATTTGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 158 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:36481115 original size:39 final size:39
Alignment explanation
Indices: 36481061--36481211 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
36481051 AATGTTCGAG
36481061 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
36481100 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
36481139 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
36481178 TGATAT-CGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
36481212 GGTTACCATA
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 8 0.08
39 97 0.92
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:36481227 original size:78 final size:78
Alignment explanation
Indices: 36481067--36481241 Score: 226
Period size: 78 Copynumber: 2.2 Consensus size: 78
36481057 CGAGTGATAT
36481067 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
** *
36481132 CGAGCTATGATAT
66 CGAGCTACCATAA
* * * * *
36481145 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATA-TCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAG-CCCGAAGGCAATTGT
* *
36481209 GCGGGTTACCATAA
65 GCGAGCTACCATAA
*
36481223 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAG-CCCGAAGG
36481242 TGTTTTGAAC
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
77 8 0.10
78 68 0.81
79 8 0.10
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.21
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCAATTGTG
CGAGCTACCATAA
Found at i:36488606 original size:39 final size:39
Alignment explanation
Indices: 36488525--36488714 Score: 292
Period size: 39 Copynumber: 4.9 Consensus size: 39
36488515 AATGTTCGAG
36488525 TGATATCCGGGCTAAGCCCGAAGGCAA-TGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
*
36488563 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
36488602 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
36488641 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * * *
36488680 TGATATTCGGGTTAAGTCCTGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
36488715 GTTACCATAA
Statistics
Matches: 140, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 26 0.19
39 98 0.70
40 16 0.11
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:36488729 original size:78 final size:78
Alignment explanation
Indices: 36488525--36488743 Score: 280
Period size: 78 Copynumber: 2.8 Consensus size: 78
36488515 AATGTTCGAG
** *
36488525 TGATATCCGGGCTAAGCCCGAAGGCAA-TGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAAGCCCGAAGGCA
36488589 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
** *
36488602 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGATACCCGGGCTAAGCCCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAAGCCCGAAGGCA
* *
36488667 ATTGTGCGAGTTG
66 ATTGTGCGAGCTA
* * * * * *
36488680 TGATATTCGGGTTAAGTCCTGAAGGCATTTGTGCG-GTTACCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAAG-CCCGAAGG
36488744 TGTTTTGAAC
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
77 27 0.21
78 77 0.60
79 24 0.19
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTACCATAACCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:36493777 original size:6 final size:6
Alignment explanation
Indices: 36493739--36493843 Score: 67
Period size: 6 Copynumber: 16.8 Consensus size: 6
36493729 TTGCATTCAC
*
36493739 ATTCTG ATAT-TG ATTCTG -TTACCTG ATAT-TG ATTCTG ATTCTA ATTCT-
1 ATTCTG AT-TCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* *
36493787 ATTCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATT---CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
36493839 ATTCT
1 ATTCT
36493844 CATTTTGGTT
Statistics
Matches: 81, Mismatches: 4, Indels: 28
0.72 0.04 0.25
Matches are distributed among these distances:
5 8 0.10
6 58 0.72
7 7 0.09
8 4 0.05
9 4 0.05
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36493777 original size:31 final size:31
Alignment explanation
Indices: 36493739--36493843 Score: 133
Period size: 31 Copynumber: 3.4 Consensus size: 31
36493729 TTGCATTCAC
36493739 ATTCTGATAT-TGATTCTGTTACCTGATAT-TG
1 ATTCTGAT-TCTGATTCTGTTACCTGAT-TCTG
* * *
36493770 ATTCTGATTCTAATTCTATTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTT-ACCTGATTCTG
*
36493802 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
36493833 ATTCTGATTCT
1 ATTCTGATTCT
36493844 CATTTTGGTT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
30 1 0.02
31 38 0.59
32 25 0.39
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:36493785 original size:12 final size:12
Alignment explanation
Indices: 36493770--36493864 Score: 59
Period size: 12 Copynumber: 7.7 Consensus size: 12
36493760 CCTGATATTG
36493770 ATTCTGATTCTA
1 ATTCTGATTCTA
36493782 ATTCT-ATTCACCTA
1 ATTCTGATT---CTA
*
36493796 ATTCTGATTCTG
1 ATTCTGATTCTA
36493808 ATTCTGATTCT-
1 ATTCTGATTCTA
* * *
36493819 GTCACCTGATTCTG
1 AT--TCTGATTCTA
*
36493833 ATTCTGATTCTC
1 ATTCTGATTCTA
* *
36493845 ATTTTGGTTCTA
1 ATTCTGATTCTA
*
36493857 GTTCTGAT
1 ATTCTGAT
36493865 AATTTCTTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
11 4 0.06
12 40 0.62
13 8 0.12
14 9 0.14
15 3 0.05
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (12 bp):
ATTCTGATTCTA
Found at i:36497884 original size:20 final size:20
Alignment explanation
Indices: 36497859--36497896 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36497849 GTTTATTCGC
*
36497859 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
36497879 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
36497897 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:36499476 original size:28 final size:28
Alignment explanation
Indices: 36499444--36499512 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
36499434 GCGTAGATCA
36499444 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
36499472 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
36499500 CGATA-TACCCCTA
1 CGAAATTACCCCTA
36499513 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:36505810 original size:20 final size:20
Alignment explanation
Indices: 36505785--36505822 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36505775 GTTTATTCGC
*
36505785 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
36505805 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
36505823 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:36507398 original size:28 final size:28
Alignment explanation
Indices: 36507366--36507434 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
36507356 GCGTAGATCA
36507366 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
36507394 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
36507422 CGATA-TACCCCTA
1 CGAAATTACCCCTA
36507435 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:36513005 original size:48 final size:48
Alignment explanation
Indices: 36512894--36513005 Score: 154
Period size: 48 Copynumber: 2.3 Consensus size: 48
36512884 ATGTTGTGAC
* * *
36512894 ACCATGTCTAGGACATGGCATAGGCAATGATATATGTGTCTGTGTAAG
1 ACCATGTCTAGGACATAGCATAGACAATGATATATGTGCCTGTGTAAG
* * *
36512942 ACCATGT-TTGAGACATAGCATCGACTATGATATATGTGCCTGTGTAAG
1 ACCATGTCTAG-GACATAGCATAGACAATGATATATGTGCCTGTGTAAG
36512990 ACCATGTCTAGGACAT
1 ACCATGTCTAGGACAT
36513006 GTATGTACGA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.04
48 51 0.93
49 2 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (48 bp):
ACCATGTCTAGGACATAGCATAGACAATGATATATGTGCCTGTGTAAG
Found at i:36525329 original size:19 final size:19
Alignment explanation
Indices: 36525294--36525331 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36525284 TTGCAATTTA
*
36525294 AATTTTTATTTTCTTTTCT
1 AATTTTTATTTTATTTTCT
36525313 AATTTTTCA-TTTATTTTCT
1 AATTTTT-ATTTTATTTTCT
36525332 TCTGACAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.18, C:0.11, G:0.00, T:0.71
Consensus pattern (19 bp):
AATTTTTATTTTATTTTCT
Found at i:36525471 original size:12 final size:12
Alignment explanation
Indices: 36525454--36525483 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
36525444 TACGATACAT
36525454 AGAGGAAGAGCA
1 AGAGGAAGAGCA
36525466 AGAGGAAGAGCA
1 AGAGGAAGAGCA
36525478 AGAGGA
1 AGAGGA
36525484 TGATACTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.43, T:0.00
Consensus pattern (12 bp):
AGAGGAAGAGCA
Found at i:36529431 original size:22 final size:23
Alignment explanation
Indices: 36529406--36529451 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36529396 CAACCAAATC
36529406 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
36529428 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
36529451 A
1 A
36529452 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:36529457 original size:23 final size:23
Alignment explanation
Indices: 36529413--36529457 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36529403 ATCAATTCAA
*
36529413 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
36529436 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
36529458 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:36532934 original size:40 final size:40
Alignment explanation
Indices: 36532889--36533056 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
36532879 CGGAATATAA
36532889 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36532929 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
36532969 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
36533009 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
36533049 CCGGATAT
1 CCGGATAT
36533057 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36540391 original size:22 final size:23
Alignment explanation
Indices: 36540366--36540411 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36540356 CAACCAAATC
36540366 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
36540388 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
36540411 A
1 A
36540412 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:36540417 original size:23 final size:23
Alignment explanation
Indices: 36540373--36540417 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36540363 ATCAATTCAA
*
36540373 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
36540396 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
36540418 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:36545353 original size:40 final size:40
Alignment explanation
Indices: 36545280--36545462 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
36545270 CCGCACCAAG
* * * * *
36545280 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
36545319 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
36545359 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
36545399 GCCTTCGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-T
* *
36545439 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
36545463 CATTCAATTT
Statistics
Matches: 118, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 13 0.11
40 99 0.84
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:36553527 original size:39 final size:40
Alignment explanation
Indices: 36553349--36553531 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
36553339 CCGCACCAAG
* * * * * * * *
36553349 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
36553389 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
36553429 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
36553469 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
36553508 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
36553532 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:36555361 original size:39 final size:40
Alignment explanation
Indices: 36555238--36555403 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
36555228 AAATTGAATG
* * *
36555238 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
36555277 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
36555317 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
36555356 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
36555396 ATATCCGG
1 ATATCCGG
36555404 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:36555370 original size:79 final size:79
Alignment explanation
Indices: 36555238--36555387 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
36555228 AAATTGAATG
*
36555238 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
36555303 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
36555317 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
36555380 ATTTGTGC
64 AATTGTGC
36555388 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:36563255 original size:40 final size:40
Alignment explanation
Indices: 36563189--36563355 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36563179 AAATTGAATG
* * *
36563189 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36563228 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36563268 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36563308 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36563348 ATATCCGG
1 ATATCCGG
36563356 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36569162 original size:56 final size:57
Alignment explanation
Indices: 36569102--36569237 Score: 204
Period size: 56 Copynumber: 2.4 Consensus size: 57
36569092 TCCCAAACAG
* **
36569102 GGTCTTACTCGCACACATATATCAGA-GTCACATATCGATGCCAATGTATAAAATGT
1 GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
* *
36569158 GGTCTTACTCTCACACATATA-CCGATGTCACATATCAATGCCAACATATAAAATGT
1 GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
*
36569214 TGTCTTACTCGCACACATATATCA
1 GGTCTTACTCGCACACATATATCA
36569238 ATGCCATGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 3 0.04
56 66 0.94
57 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.29
Consensus pattern (57 bp):
GGTCTTACTCGCACACATATATCAGATGTCACATATCAATGCCAACATATAAAATGT
Found at i:36573892 original size:13 final size:13
Alignment explanation
Indices: 36573874--36573909 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
36573864 AAGTAATCGA
36573874 ACACGGGCGTCTC
1 ACACGGGCGTCTC
36573887 ACACGGGCGTCTC
1 ACACGGGCGTCTC
36573900 ACACGGGCGT
1 ACACGGGCGT
36573910 GTCCCTGCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.36, G:0.33, T:0.14
Consensus pattern (13 bp):
ACACGGGCGTCTC
Found at i:36575091 original size:44 final size:42
Alignment explanation
Indices: 36574948--36575111 Score: 134
Period size: 42 Copynumber: 3.9 Consensus size: 42
36574938 ACGAGATCAA
* ** *
36574948 ATGCCAACGTCCCAGACGTGGTCTTACATG-AATCAAATATCG
1 ATGCCAATGTCCCAGACACGGTCTTACACGAAATCAAATA-CG
** * * *
36574990 ATGCCTCTATCCCAGACAGGGTCTTACACGAAATCAAATATG
1 ATGCCAATGTCCCAGACACGGTCTTACACGAAATCAAATACG
* * *
36575032 ATGCCGATGTACCAGACACGGTCTTACACGTAAATCTCAAA-CCG
1 ATGCCAATGTCCCAGACACGGTCTTACACG-AAA--TCAAATACG
*** *
36575076 ATGCCAATGTCCCAGATGTGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGACACGGTCTTACACGAAATCA
36575112 CATATTAGAA
Statistics
Matches: 97, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
41 3 0.03
42 49 0.51
43 15 0.15
44 25 0.26
45 5 0.05
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACACGGTCTTACACGAAATCAAATACG
Found at i:36581688 original size:28 final size:28
Alignment explanation
Indices: 36581642--36581710 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
36581632 TTTAAAACCC
*
36581642 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36581669 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
36581697 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
36581711 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:36586496 original size:30 final size:30
Alignment explanation
Indices: 36586460--36586519 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
36586450 TAAACTTGAA
36586460 TTACTCATTAGCGTCTACTCAAGTCACATT
1 TTACTCATTAGCGTCTACTCAAGTCACATT
36586490 TTACTCATTAGCGTCTACTCAAGTCACATT
1 TTACTCATTAGCGTCTACTCAAGTCACATT
36586520 CTCTAATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.37
Consensus pattern (30 bp):
TTACTCATTAGCGTCTACTCAAGTCACATT
Found at i:36586925 original size:47 final size:46
Alignment explanation
Indices: 36586679--36587044 Score: 305
Period size: 49 Copynumber: 7.7 Consensus size: 46
36586669 GATAAGTTGT
* * * *
36586679 CGATAGCATGTCCTAGACATGGTATTACACTGGCTA-TCATCATCGAGGC
1 CGAT-GCATGTCCCAGACAT-GTCTTACACTGGC-ACTCATAATC-TGGC
* * * * * *
36586728 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTATATACCT-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCAC-T-CATA-ATCTGGC
* * * *
36586778 TGATGCATGTCCCAGACATGTCTTACACTGGCA--CA-ACTCTCAGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCT-GGC
* *
36586822 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-CTCTACGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCT-GGC
* *
36586868 CGATGCCATGTCCCAAACATGGTCTTACACTGGCACTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATCTGGC
* ** *
36586916 CGATGCATGTCCCAAACATGTCTTACACTGGCTA-TCATCGTCAAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATAATC-TGGC
*
36586963 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATCTGGC
* *
36587011 TGATGAATGTCCCAGACATGTCTTACACTGGCAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCAC
36587045 ATAAGTAATC
Statistics
Matches: 265, Mismatches: 34, Indels: 39
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.01
43 1 0.00
44 35 0.13
46 45 0.17
47 49 0.18
48 60 0.23
49 62 0.23
50 7 0.03
51 2 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCTGGC
Found at i:36586997 original size:95 final size:94
Alignment explanation
Indices: 36586685--36587044 Score: 376
Period size: 95 Copynumber: 3.8 Consensus size: 94
36586675 TTGTCGATAG
* * * * *
36586685 CATGTCCTAGACATGGTATTACACTGGCTA-TCATCATCGAGGCTGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTGGC-ACTCATAAT-GTGGCCGATG-CATGTCCCAGACAT-
* * * * * **
36586749 GTCTTACACTAGCTCTTGTATAT-ACCTGTTGATG-
62 GTCTTACACTGGCAC-T-CATCTCAAC-GCCGATGC
* * * *
36586783 CATGTCCCAGACAT-GTCTTACACTGGCA--CA-ACTCTCAGTCGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGT-GGCCGATGCATGTCCCAGACATGTC
*
36586844 TTACACTGGCACTCATCTCTACGCCGATGC
65 TTACACTGGCACTCATCTCAACGCCGATGC
* *
36586874 CATGTCCCAAACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCAAACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
*
36586939 TACACTGGCTA-TCATCGTCAAGGCCGATGC
66 TACACTGGC-ACTCATC-TCAACGCCGATGC
* *
36586969 CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCTGATGAATGTCCCAGACATGTCT
1 CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
36587034 TACACTGGCAC
66 TACACTGGCAC
36587045 ATAAGTAATC
Statistics
Matches: 223, Mismatches: 29, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
90 8 0.04
91 15 0.07
92 27 0.12
93 14 0.06
94 46 0.21
95 87 0.39
96 1 0.00
97 12 0.05
98 13 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
CATGTCCCAGACATGGTCTTACACTGGCACTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
TACACTGGCACTCATCTCAACGCCGATGC
Found at i:36587777 original size:12 final size:12
Alignment explanation
Indices: 36587760--36587784 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36587750 CAAAAAAGTA
36587760 AAAATCATCAAG
1 AAAATCATCAAG
36587772 AAAATCATCAAG
1 AAAATCATCAAG
36587784 A
1 A
36587785 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:36594574 original size:47 final size:47
Alignment explanation
Indices: 36594462--36594819 Score: 255
Period size: 47 Copynumber: 7.7 Consensus size: 47
36594452 ATACATGTTA
* * * * *
36594462 ATGCATGTCCCAGACATGTCTTACACT--AACACAAC-TCTCA-GCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACTCATCGT-TGAGGCCG
* * *
36594506 ATTCATGTCTCAGACACGTCTTACACTGGCTA-TCATCGTTGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCGTTGAGGCCG
* * * *
36594553 ATGTATGTCCCAAGA-ATGTCTTACACTGGCACTCAT--TTCTACGTCG
1 ATGCATGTCCC-AGACATGTCTTACACTGGCACTCATCGTT-GAGGCCG
36594599 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAACG-T--GGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT--CGTTGAGGCCG
* *
36594647 ATGCATGTCCCAGACATGTCTTACATTGGCTA-TCATCGTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCGTTGAGGCCG
* * * **
36594694 ATGCATG-CCTCAAATATGTCTTACACTGGCACTCATC-TCT-ATGCTA
1 ATGCATGTCC-CAGACATGTCTTACACTGGCACTCATCGT-TGAGGCCG
** *
36594740 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT-AATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCGTTGAGGCCG
* *
36594788 ATGCATG-CCCAAAAGATGTCTTACACTGGCAC
1 ATGCATGTCCC-AGACATGTCTTACACTGGCAC
36594820 ATAAGTAATC
Statistics
Matches: 250, Mismatches: 36, Indels: 54
0.74 0.11 0.16
Matches are distributed among these distances:
44 26 0.10
45 2 0.01
46 60 0.24
47 107 0.43
48 54 0.22
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACTCATCGTTGAGGCCG
Found at i:36594654 original size:141 final size:141
Alignment explanation
Indices: 36594509--36594817 Score: 446
Period size: 141 Copynumber: 2.2 Consensus size: 141
36594499 TCAGCTGATT
* * *
36594509 CATGTCTCAGACACGTCTTACACTGGCTATCATCGTTGAGGCCGATGTATGTCC-CAAGA-ATGT
1 CATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATG-CCTCAA-ATATGT
* *
36594572 CTTACACTGGCACTCATTTCTACG-TCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCA
64 CTTACACTGGCACTCATCTCTACGCT-AATGCCATGTCCCAGACATGGTCTTACACTGGCACTCA
36594636 TAACGTGGCCGATG
128 TAACGTGGCCGATG
* *
36594650 CATGTCCCAGACATGTCTTACATTGGCTATCATCGTCGAGGCCGATGCATGCCTCAAATATGTCT
1 CATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGCCTCAAATATGTCT
*
36594715 TACACTGGCACTCATCTCTATGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAA
66 TACACTGGCACTCATCTCTACGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAA
*
36594780 TGTGGCCGATG
131 CGTGGCCGATG
* * *
36594791 CATG-CCCAAAAGATGTCTTACACTGGC
1 CATGTCCC-AGACACGTCTTACACTGGC
36594818 ACATAAGTAA
Statistics
Matches: 152, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
140 6 0.04
141 145 0.95
142 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (141 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCCGATGCATGCCTCAAATATGTCT
TACACTGGCACTCATCTCTACGCTAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAA
CGTGGCCGATG
Found at i:36594947 original size:15 final size:15
Alignment explanation
Indices: 36594929--36594979 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
36594919 CACAATCTAG
36594929 CAATTCATACTATAT
1 CAATTCATACTATAT
36594944 CAATTCA-A-TA-A-
1 CAATTCATACTATAT
*
36594955 CAAATCATACTATAT
1 CAATTCATACTATAT
36594970 CAATTCATAC
1 CAATTCATAC
36594980 ATTAATAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
11 6 0.20
12 2 0.07
13 4 0.13
14 2 0.07
15 16 0.53
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (15 bp):
CAATTCATACTATAT
Found at i:36597943 original size:21 final size:22
Alignment explanation
Indices: 36597899--36597953 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
36597889 TGCAGGGCTC
* *
36597899 ACATGCCTCTGTGGTCCAAGGG
1 ACATGCCTGTGTGGACCAAGGG
*
36597921 ACATGCCTGTGT-GACCCAGGG
1 ACATGCCTGTGTGGACCAAGGG
36597942 ACATGCCTGTGT
1 ACATGCCTGTGT
36597954 TGGAGGCCGT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.18, C:0.27, G:0.31, T:0.24
Consensus pattern (22 bp):
ACATGCCTGTGTGGACCAAGGG
Found at i:36598934 original size:12 final size:12
Alignment explanation
Indices: 36598917--36598941 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36598907 TATGTATGTT
36598917 TGAAAATTTTTA
1 TGAAAATTTTTA
36598929 TGAAAATTTTTA
1 TGAAAATTTTTA
36598941 T
1 T
36598942 TATTTGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:36601008 original size:25 final size:25
Alignment explanation
Indices: 36600966--36601013 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36600956 TTATAATATG
**
36600966 AAAATGACTGTTTCACCCCTAGGTA
1 AAAATGACCATTTCACCCCTAGGTA
* *
36600991 AAAATGACCATTTTACCCTTAGG
1 AAAATGACCATTTCACCCCTAGG
36601014 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTCACCCCTAGGTA
Found at i:36601194 original size:24 final size:25
Alignment explanation
Indices: 36601124--36601192 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
36601114 GAGGAAGTGC
* * *
36601124 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTATCA
36601149 AAAA-GGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTATCA
*
36601173 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
36601193 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 21 0.54
25 18 0.46
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTATCA
Found at i:36601199 original size:24 final size:24
Alignment explanation
Indices: 36601123--36601205 Score: 78
Period size: 24 Copynumber: 3.4 Consensus size: 24
36601113 GGAGGAAGTG
* * * *
36601123 CAAAAGGGCTATGCCCTAGTTTAC
1 CAAAAAGGCTTTGCCCCAGTTTAT
* *
36601147 CGAAAAGGCTTTGCCCTAGTTTAT
1 CAAAAAGGCTTTGCCCCAGTTTAT
36601171 CAAAAAGGGCTTTGCCCCAG-TTAT
1 CAAAAA-GGCTTTGCCCCAGTTTAT
*
36601195 TAAAAGAGGCT
1 CAAAA-AGGCT
36601206 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
24 37 0.74
25 13 0.26
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAAGGCTTTGCCCCAGTTTAT
Found at i:36601449 original size:31 final size:31
Alignment explanation
Indices: 36601413--36601527 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
36601403 TATTTGCAGT
* *
36601413 AAAGGCTTTGGCCTAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
36601444 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
36601475 AAAGGCTTCGGCCCAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
36601506 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
36601528 CTGAAATTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 72 0.95
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:36602184 original size:6 final size:6
Alignment explanation
Indices: 36602175--36602249 Score: 64
Period size: 6 Copynumber: 12.2 Consensus size: 6
36602165 TACCTGATAT
* * *
36602175 TGATTC TGATTC TAATTC T-ATCACC TAATTC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
*
36602224 TG-TCACC TGATTC TGATTC TGATTC T
1 TGAT--TC TGATTC TGATTC TGATTC T
36602250 CATTTTGGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
5 3 0.05
6 46 0.81
7 5 0.09
8 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:36602213 original size:31 final size:31
Alignment explanation
Indices: 36602175--36602249 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
36602165 TACCTGATAT
36602175 TGATTCTGATTCTAATTCTATCACCTAATTC
1 TGATTCTGATTCTAATTCTATCACCTAATTC
* * *
36602206 TGATTCTGATTCTGATTCTGTCACCTGATTC
1 TGATTCTGATTCTAATTCTATCACCTAATTC
36602237 TGATTCTGATTCT
1 TGATTCTGATTCT
36602250 CATTTTGGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (31 bp):
TGATTCTGATTCTAATTCTATCACCTAATTC
Found at i:36611580 original size:40 final size:40
Alignment explanation
Indices: 36611495--36611645 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
36611485 AATTGAATGA
* * *
36611495 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
36611535 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
36611576 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
36611615 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
36611646 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:36611659 original size:40 final size:40
Alignment explanation
Indices: 36611532--36611661 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
36611522 ATGCTGGAAA
* * * *
36611532 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
36611572 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
36611612 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
36611652 TTATATCCGG
1 TTATATCCGG
36611662 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:36618770 original size:29 final size:29
Alignment explanation
Indices: 36618629--36618758 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
36618619 GACAAGATTG
* * * *
36618629 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
36618659 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
36618687 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36618716 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36618745 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36618759 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:36624090 original size:37 final size:37
Alignment explanation
Indices: 36624040--36624152 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
36624030 TGTTATTAAG
36624040 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
*
36624077 ATCGTGGGACATGGAAACATTTGATTAGACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
* *
36624114 ATCATGGGACATGGAAACATTTGAGTACACTAAGTAT
1 ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
36624151 AT
1 AT
36624153 GAATAAGGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (37 bp):
ATCGTGGGACATGGAAACATTTGAGTAGACTAAGTAT
Found at i:36626654 original size:27 final size:28
Alignment explanation
Indices: 36626598--36626667 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
36626588 AAATTTGTAC
36626598 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
36626626 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
36626653 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36626668 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:36626678 original size:27 final size:27
Alignment explanation
Indices: 36626598--36626679 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
36626588 AAATTTGTAC
* *
36626598 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
36626626 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
36626653 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
36626680 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:36634468 original size:27 final size:28
Alignment explanation
Indices: 36634412--36634481 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
36634402 AAATTTGTAC
36634412 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
36634440 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
36634467 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36634482 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:36634492 original size:27 final size:27
Alignment explanation
Indices: 36634412--36634493 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
36634402 AAATTTGTAC
* *
36634412 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
36634440 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
36634467 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
36634494 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:36650976 original size:13 final size:13
Alignment explanation
Indices: 36650958--36651000 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
36650948 TACGAGCTCT
36650958 ATGTTTTAAGTAC
1 ATGTTTTAAGTAC
* * *
36650971 ATGTTTTGACTAAT
1 ATGTTTTAAGT-AC
36650985 ATGTTTTAAGTAC
1 ATGTTTTAAGTAC
36650998 ATG
1 ATG
36651001 CCATAGGATT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.30, C:0.07, G:0.16, T:0.47
Consensus pattern (13 bp):
ATGTTTTAAGTAC
Found at i:36658678 original size:29 final size:29
Alignment explanation
Indices: 36658527--36658657 Score: 235
Period size: 29 Copynumber: 4.5 Consensus size: 29
36658517 GTGACGAGAT
36658527 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36658556 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
36658585 TGGCACTAAGTGTGCATGTTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
36658614 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36658643 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36658658 GAGCTCGAAG
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36658704 original size:87 final size:85
Alignment explanation
Indices: 36658527--36658715 Score: 220
Period size: 87 Copynumber: 2.2 Consensus size: 85
36658517 GTGACGAGAT
* *
36658527 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
*
36658592 AAGTGTGCATGTTGGAAAAATA
66 AAGTGTGCAGGTT-G-AAAATA
* * *
36658614 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTATGGCAC
1 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTCGAAAGATATGGCAC
** * *
36658678 TGTGTGTGCGGGCTT-AAATTGCA
65 TAAGTGTGCAGG-TTGAAAAT--A
36658701 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36658716 GAAATCGAGT
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
85 4 0.05
87 80 0.92
88 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (85 bp):
TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTCGAAAGATATGGCACT
AAGTGTGCAGGTTGAAAATA
Found at i:36658755 original size:2 final size:2
Alignment explanation
Indices: 36658750--36658774 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36658740 GTGCGTACTC
36658750 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
36658775 CTCCGATCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36663080 original size:43 final size:45
Alignment explanation
Indices: 36663018--36663129 Score: 137
Period size: 43 Copynumber: 2.6 Consensus size: 45
36663008 TGCCATACCA
* *
36663018 ATGCC-ATATCCCAGATATGGTTTTACATG-GGA-TCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCTCATATCG
* *
36663060 ATGCCAATAGCCCAGCTATGGTCTT--ATGTGAAGTCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCTCATATCG
*
36663103 ATG-AAATATCCCAGATATGGTCTTACA
1 ATGCCAATATCCCAGATATGGTCTTACA
36663130 CGTAATCTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.05
42 25 0.43
43 29 0.50
44 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (45 bp):
ATGCCAATATCCCAGATATGGTCTTACATGTGAAGTCTCATATCG
Found at i:36672494 original size:42 final size:42
Alignment explanation
Indices: 36672382--36672495 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
36672372 TGCCATACCA
* * *
36672382 ATGCCATATCCCAGATATGGTCTTATATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCG
* * *
36672424 ATGCAAATAGT-CCAGCTATGGTCTTACACGA-AGTCTCATATGG
1 ATGC-CATA-TCCCAGATATGGTCTTACACGAGA-TCTCATATCG
36672467 ATGCCATATCCCAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
36672496 TAATTTCAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.43
43 32 0.53
44 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAGATCTCATATCG
Found at i:36673066 original size:20 final size:21
Alignment explanation
Indices: 36673041--36673082 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
36673031 TCACCTAGTA
*
36673041 AAACTTGT-TTATCTAACATT
1 AAACTTGTATAATCTAACATT
*
36673061 AAACTTGTATAATCTACCATT
1 AAACTTGTATAATCTAACATT
36673082 A
1 A
36673083 TACATCAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (21 bp):
AAACTTGTATAATCTAACATT
Found at i:36678653 original size:41 final size:43
Alignment explanation
Indices: 36678570--36678668 Score: 105
Period size: 41 Copynumber: 2.3 Consensus size: 43
36678560 ATAATTATTG
* * * *
36678570 TAATTATAATTTAGGATCAAATATTATTATAATAACTATAATTG
1 TAATTATTATTT-GGGTCAAACATTATTATAATAACTATAATTA
* *
36678614 TAATT-TT-TTTGGGTCAAACATTATTATAATTA-TGGTAATTA
1 TAATTATTATTTGGGTCAAACATTATTATAATAACT-ATAATTA
36678655 TAATTATTATTTGG
1 TAATTATTATTTGG
36678669 TTACTTATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
40 1 0.02
41 29 0.63
42 5 0.11
43 6 0.13
44 5 0.11
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.47
Consensus pattern (43 bp):
TAATTATTATTTGGGTCAAACATTATTATAATAACTATAATTA
Found at i:36685611 original size:20 final size:20
Alignment explanation
Indices: 36685582--36685626 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
36685572 AGAACAAGTA
* *
36685582 TTCATAAAATTATAGAATTT
1 TTCATAAAATTATACAACTT
* *
36685602 TTCATCAAATTTTACAACTT
1 TTCATAAAATTATACAACTT
36685622 TTCAT
1 TTCAT
36685627 TTTAGTCCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.47
Consensus pattern (20 bp):
TTCATAAAATTATACAACTT
Found at i:36690173 original size:43 final size:42
Alignment explanation
Indices: 36690053--36690217 Score: 152
Period size: 43 Copynumber: 3.9 Consensus size: 42
36690043 AGCTCGTACA
* * * *
36690053 ATGCCAACGACCCAGACTTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATA-CG
** ** *
36690096 ATGCCTTTGTCTTAGACAGGGTCTTACATGAAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
* * *
36690138 ATGTCAATGTCCCAGACATGGTATTACATGTAAATCTCAAAT-TG
1 ATGCCAATGTCCCAGACATGGTCTTACATG-AAA--TCAAATACG
* * *
36690182 ATGCCAACGTCCTAGACGTGGTCTTACATGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACATGAAATCA
36690218 CATTCCTAAC
Statistics
Matches: 97, Mismatches: 22, Indels: 8
0.76 0.17 0.06
Matches are distributed among these distances:
41 3 0.03
42 25 0.26
43 37 0.38
44 26 0.27
45 6 0.06
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGAAATCAAATACG
Found at i:36694835 original size:25 final size:25
Alignment explanation
Indices: 36694801--36694851 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
36694791 GTGAAATGTG
36694801 TTTATTTTGATGTTTTATGGTAGAA
1 TTTATTTTGATGTTTTATGGTAGAA
36694826 TTTATTTTGATGTTTTATGGTAGAA
1 TTTATTTTGATGTTTTATGGTAGAA
36694851 T
1 T
36694852 ATGAAGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.57
Consensus pattern (25 bp):
TTTATTTTGATGTTTTATGGTAGAA
Found at i:36695522 original size:55 final size:54
Alignment explanation
Indices: 36695444--36695628 Score: 243
Period size: 55 Copynumber: 3.4 Consensus size: 54
36695434 ATTAGGGTTT
*
36695444 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGGCATGG-CATTGGTAA-GTTTCATAAGGC
* *
36695499 AAGGATATCATGTAAGACCATGCC-AGGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGG-CATGGCATTGGTAAGTTTC-ATAAGGC
* * *
36695554 AAAGG-TCCCATGTAAGATCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
36695607 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
36695629 TTGAGACATG
Statistics
Matches: 114, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
52 4 0.04
53 27 0.24
54 13 0.11
55 63 0.55
56 7 0.06
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTCATAAGGC
Found at i:36695650 original size:108 final size:110
Alignment explanation
Indices: 36695451--36695650 Score: 273
Period size: 108 Copynumber: 1.8 Consensus size: 110
36695441 TTTAAGGATA
*
36695451 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
36695516 CCATGCCAGGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGCCAGGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
36695561 CCATGTAAGATCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
** *
36695623 ACCATG-TTGAGACATGGAAATGGTAAGT
65 ACCATGCCAG-GACATGGAAATGATAAGT
36695651 ATCAAAAGGA
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
107 4 0.05
108 43 0.54
109 7 0.09
110 25 0.32
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGCCAGGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:36695912 original size:16 final size:16
Alignment explanation
Indices: 36695891--36695921 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36695881 ATAAATTTGA
36695891 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
36695907 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
36695922 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:36699792 original size:40 final size:40
Alignment explanation
Indices: 36699726--36699892 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36699716 AAATTGAATG
* * *
36699726 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36699765 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36699805 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36699845 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36699885 ATATCCGG
1 ATATCCGG
36699893 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36707783 original size:40 final size:40
Alignment explanation
Indices: 36707717--36707883 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36707707 AAATTGAATG
* * *
36707717 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36707756 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36707796 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36707836 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36707876 ATATCCGG
1 ATATCCGG
36707884 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36712786 original size:2 final size:2
Alignment explanation
Indices: 36712779--36712804 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36712769 GATTAAATGA
36712779 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
36712805 GCTAGTATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36719327 original size:37 final size:37
Alignment explanation
Indices: 36719277--36719404 Score: 238
Period size: 37 Copynumber: 3.4 Consensus size: 37
36719267 TTATTACGAA
36719277 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
36719314 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
36719351 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
36719388 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
36719405 TTTCCAAGTT
Statistics
Matches: 89, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
37 84 0.94
38 5 0.06
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:36719503 original size:48 final size:48
Alignment explanation
Indices: 36719444--36719642 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
36719434 TGTTACAACA
*
36719444 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
36719492 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
36719540 TTCACATTAGCC-TTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
36719587 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
36719635 TTCACATT
1 TTCACATT
36719643 CATCACATCG
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 46 0.32
48 100 0.68
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:36719608 original size:95 final size:96
Alignment explanation
Indices: 36719444--36719642 Score: 364
Period size: 95 Copynumber: 2.1 Consensus size: 96
36719434 TGTTACAACA
36719444 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
*
36719509 GCTTTACCACATATACATATCACACATCTAT
66 GCTTTACCACATATACATATCACACATATAT
*
36719540 TTCACATTAGCC-TTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
*
36719604 GCTTTACCACATATACATATCACACATATGT
66 GCTTTACCACATATACATATCACACATATAT
36719635 TTCACATT
1 TTCACATT
36719643 CATCACATCG
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
95 88 0.88
96 12 0.12
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:36719649 original size:57 final size:57
Alignment explanation
Indices: 36719588--36719847 Score: 196
Period size: 57 Copynumber: 4.5 Consensus size: 57
36719578 CACATATATT
* * *
36719588 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * * * * *
36719645 TCACATCGGCCATTAGGCCTTATCACATATATAGGCT-TTACCACATATACATATCACACATATG
1 TCACATCAGCCATTAGGCCTTACCACATATACA---TATCA-CACATAT--GT-T-TCACAT-T-
**
36719709 TT
56 CA
* * *
36719711 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * *
36719768 TCACATCGGCCATTAGGCCTTATCACATAT--ATAT-ACAC-----CTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* *
36719817 TCACATCGGCCATTAGGCCTTATCACATATA
1 TCACATCAGCCATTAGGCCTTACCACATATA
36719848 TACTCTTTCA
Statistics
Matches: 163, Mismatches: 28, Indels: 31
0.73 0.13 0.14
Matches are distributed among these distances:
49 40 0.25
54 4 0.02
55 4 0.02
57 52 0.32
58 1 0.01
59 7 0.04
60 9 0.06
61 1 0.01
62 1 0.01
63 9 0.06
64 7 0.04
65 1 0.01
66 27 0.17
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (57 bp):
TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
Found at i:36719689 original size:18 final size:18
Alignment explanation
Indices: 36719658--36719693 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36719648 CATCGGCCAT
*
36719658 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
36719676 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
36719694 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:36719694 original size:123 final size:123
Alignment explanation
Indices: 36719555--36719800 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
36719545 ATTAGCCTTC
36719555 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
36719620 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
36719678 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
36719743 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
36719801 TACACCTTCA
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:36719813 original size:49 final size:49
Alignment explanation
Indices: 36719757--36720045 Score: 492
Period size: 49 Copynumber: 5.9 Consensus size: 49
36719747 CACACATATG
*
36719757 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
36719806 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
36719853 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
36719902 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
36719951 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
36720002 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
36720046 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
47 44 0.19
49 136 0.60
51 48 0.21
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:36719864 original size:96 final size:96
Alignment explanation
Indices: 36719757--36720047 Score: 492
Period size: 96 Copynumber: 3.0 Consensus size: 96
36719747 CACACATATG
* *
36719757 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
36719822 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACAC
*
36719853 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
36719918 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACAC
36719951 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
36720016 CATTGGCCATTAGGCCGTATCACATATATACA
64 CATTGGCCATTAGGCCTTATCACATATATACA
36720048 TCTCATACAT
Statistics
Matches: 184, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 82 0.45
98 55 0.30
100 47 0.26
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACAC
Found at i:36719906 original size:145 final size:146
Alignment explanation
Indices: 36719757--36720045 Score: 490
Period size: 145 Copynumber: 2.0 Consensus size: 146
36719747 CACACATATG
36719757 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
36719822 TCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
*
36719886 TCACATGTATATACAC
131 TCACATATATATACAC
* *
36719902 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
36719967 TTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
66 TCGGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
36720032 GTATCACATATATA
128 GTATCACATATATA
36720046 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
145 83 0.62
149 51 0.38
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
TCACATATATATACAC
Found at i:36723978 original size:40 final size:40
Alignment explanation
Indices: 36723822--36723965 Score: 245
Period size: 40 Copynumber: 3.6 Consensus size: 40
36723812 CCAGCATGAT
* * *
36723822 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
36723862 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
36723902 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
36723942 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
36723966 TAACCACAAG
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 7 0.07
40 93 0.93
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:36723978 original size:80 final size:80
Alignment explanation
Indices: 36723820--36723990 Score: 240
Period size: 80 Copynumber: 2.1 Consensus size: 80
36723810 CACCAGCATG
*
36723820 ATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
* * *
36723885 TACATCACTAGCACGA
66 TAAACCACAAGCAC-A
* * *
36723901 A-TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAG-CCGGA
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
36723964 TATAACCACAAGCACA
66 TA-AACCACAAGCACA
36723980 ATTGC-CTTCGG
1 ATTGCTCTTCGG
36723991 GTCTTAACCC
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
79 15 0.19
80 65 0.80
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGA
TAAACCACAAGCACA
Found at i:36724008 original size:40 final size:40
Alignment explanation
Indices: 36723962--36724082 Score: 127
Period size: 40 Copynumber: 3.0 Consensus size: 40
36723952 AATTTAGCCG
* * *
36723962 GATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCG
1 GATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCA
* * *
36724002 GGTATAACAACTCA-CACAAATGCCTTCGGGTCTTAGCCCA
1 GATATAACCAC-AAGCACAAATGCCTTCGGGTCTTAGCCCA
** * * *
36724042 GATATATTCACTAGCATAAATGCCTTCGGGACTTAGCCCA
1 GATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCA
36724082 G
1 G
36724083 GTATCATTCA
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
39 1 0.02
40 64 0.97
41 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (40 bp):
GATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCA
Found at i:36726039 original size:37 final size:37
Alignment explanation
Indices: 36725989--36726079 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
36725979 TTATTACGAA
36725989 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
36726026 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
36726063 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
36726080 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:36726175 original size:48 final size:48
Alignment explanation
Indices: 36726119--36726318 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
36726109 TGTTACAACA
*
36726119 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
36726167 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATCTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
36726215 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
36726263 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
36726311 TTCACATT
1 TTCACATT
36726319 CATCACATCG
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 146 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:36726365 original size:18 final size:18
Alignment explanation
Indices: 36726334--36726369 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36726324 CATCGGCCAT
*
36726334 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
36726352 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
36726370 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:36726370 original size:123 final size:123
Alignment explanation
Indices: 36726231--36726476 Score: 483
Period size: 123 Copynumber: 2.0 Consensus size: 123
36726221 TTAGCCCTTC
36726231 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
36726296 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
36726354 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
36726419 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
36726477 TACACAAAAT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 122 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:36727554 original size:40 final size:40
Alignment explanation
Indices: 36727497--36727721 Score: 312
Period size: 40 Copynumber: 5.7 Consensus size: 40
36727487 CTAACGGGGT
* * * * *
36727497 TAAGTCCCGAAGACATTTCTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
36727537 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
36727577 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
36727617 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
36727657 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
36727697 TAAGACCCGATGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
36727722 GGTTATATCC
Statistics
Matches: 172, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.06
40 161 0.94
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:36735973 original size:40 final size:40
Alignment explanation
Indices: 36735724--36735945 Score: 356
Period size: 40 Copynumber: 5.5 Consensus size: 40
36735714 CTAACGGGGT
* * * *
36735724 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
* *
36735764 TAAGTCCCAAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
36735804 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
36735844 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
36735884 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
36735924 TAAGTCCCGAAGGCATTTGTGC
1 TAAGTCCCGAAGGCATTTGTGC
36735946 TAGTGACCAT
Statistics
Matches: 169, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 167 0.99
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:36735973 original size:120 final size:120
Alignment explanation
Indices: 36735720--36735973 Score: 359
Period size: 120 Copynumber: 2.1 Consensus size: 120
36735710 GATGCTAACG
* * *
36735720 GGGTTAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCAAAGGCATTTGTG
1 GGGTTAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCAGGCTAAGTCCCAAAGGCATTTGTG
* * *
36735785 CGAGTTACTAATTCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
66 CGAGTTACTAATTCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATTCC
* * * *
36735840 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGTCCCGAAGGCATTTGTG
1 GGGTTAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCAGGCTAAGTCCCAAAGGCATTTGTG
* *
36735905 CGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC-ATATCC
66 CGAGTTACTAAT-TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAT-TCC
*
36735960 GGGTTAAGACCCGA
1 GGGTTAAGTCCCGA
36735974 CGGCCTTGTC
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
119 4 0.03
120 114 0.97
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (120 bp):
GGGTTAAGTCCCGAAGACATTTGTGCGAGTGACTAATTCCAGGCTAAGTCCCAAAGGCATTTGTG
CGAGTTACTAATTCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAATTCC
Found at i:36737814 original size:10 final size:10
Alignment explanation
Indices: 36737788--36737834 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
36737778 TCGAAATACA
36737788 AAGAGAAAAAG
1 AAGA-AAAAAG
36737799 AA-AAAAAAG
1 AAGAAAAAAG
*
36737808 AAGAAAAAAA
1 AAGAAAAAAG
36737818 AAGAAAAGAA-
1 AAGAAAA-AAG
36737828 AAGAAAA
1 AAGAAAA
36737835 GAAAGGGCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 8 0.24
10 21 0.64
11 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAGAAAAAAG
Found at i:36737835 original size:5 final size:5
Alignment explanation
Indices: 36737794--36737838 Score: 60
Period size: 5 Copynumber: 9.6 Consensus size: 5
36737784 TACAAAGAGA
*
36737794 AAAAG AAAA- AAAAG --AAG AAAAA AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAA
36737839 GGGCTAGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.09
4 4 0.11
5 28 0.80
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:36739884 original size:15 final size:15
Alignment explanation
Indices: 36739847--36739895 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
36739837 TTGAAAAATC
*
36739847 GAAAGCAAAAGAAAA
1 GAAAGAAAAAGAAAA
36739862 -AAAGGAAAAA-AATAA
1 GAAA-GAAAAAGAA-AA
36739877 GAAAGAAAAAGAAAA
1 GAAAGAAAAAGAAAA
36739892 GAAA
1 GAAA
36739896 ATAGAAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 5 0.17
15 19 0.66
16 5 0.17
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (15 bp):
GAAAGAAAAAGAAAA
Found at i:36739896 original size:23 final size:23
Alignment explanation
Indices: 36739860--36739918 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
36739850 AGCAAAAGAA
36739860 AAAAAGGAAA-AAAATA-AGAAAG
1 AAAAAGGAAAGAAAATAGA-AAAG
*
36739882 AAAAAGAAAAGAAAATAGAAAAG
1 AAAAAGGAAAGAAAATAGAAAAG
36739905 AAGAAAGGAAAGAA
1 AA-AAAGGAAAGAA
36739919 TGAGCCAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 9 0.28
23 12 0.38
24 11 0.34
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.03
Consensus pattern (23 bp):
AAAAAGGAAAGAAAATAGAAAAG
Found at i:36739904 original size:12 final size:11
Alignment explanation
Indices: 36739848--36739918 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
36739838 TGAAAAATCG
*
36739848 AAAGCAAAAG-
1 AAAGAAAAAGA
*
36739858 AAA-AAAAGGA
1 AAAGAAAAAGA
36739868 AAA-AAATAAG-
1 AAAGAAA-AAGA
36739878 AAAGAAAAAGA
1 AAAGAAAAAGA
36739889 AAAGAAAATAGA
1 AAAGAAAA-AGA
*
36739901 AAAGAAGAAAGG
1 AAAGAA-AAAGA
36739913 AAAGAA
1 AAAGAA
36739919 TGAGCCAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
9 4 0.08
10 15 0.29
11 13 0.25
12 17 0.33
13 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.20, T:0.03
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:36743537 original size:26 final size:26
Alignment explanation
Indices: 36743482--36743531 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
36743472 AAAGTCTAAA
*
36743482 ATTTCACCCATGTTGAATATTTGTAC
1 ATTTCACCCATGTTGAATATTTGGAC
36743508 ATTTCACCCATGTTGAATATTTGG
1 ATTTCACCCATGTTGAATATTTGG
36743532 GTATTTTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (26 bp):
ATTTCACCCATGTTGAATATTTGGAC
Found at i:36743570 original size:59 final size:59
Alignment explanation
Indices: 36743497--36743617 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
36743487 ACCCATGTTG
*
36743497 AATATTTGTACATTTCACCCATGTTGAATATTTGGGTATTTTGATGTTTAATGGTAGAA
1 AATATTTATACATTTCACCCATGTTGAATATTTGGGTATTTTGATGTTTAATGGTAGAA
36743556 AATATTTATACATTTCACCCATGTTGAATATTTGGGTATTTTGATGTTTAATGGTAGAA
1 AATATTTATACATTTCACCCATGTTGAATATTTGGGTATTTTGATGTTTAATGGTAGAA
36743615 AAT
1 AAT
36743618 GTATGTTTGG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (59 bp):
AATATTTATACATTTCACCCATGTTGAATATTTGGGTATTTTGATGTTTAATGGTAGAA
Found at i:36757231 original size:28 final size:29
Alignment explanation
Indices: 36757199--36757297 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
36757189 ATAATAAGCC
*
36757199 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
36757227 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
36757255 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
36757284 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36757298 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:36765242 original size:28 final size:29
Alignment explanation
Indices: 36765210--36765308 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
36765200 ATAATAAGCC
*
36765210 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
36765238 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
36765266 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
36765295 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36765309 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:36769450 original size:22 final size:21
Alignment explanation
Indices: 36769420--36769466 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
36769410 TACAAATTAA
36769420 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
36769442 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
36769463 ATCT
1 ATCT
36769467 AAGATTGCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:36769472 original size:19 final size:19
Alignment explanation
Indices: 36769437--36769517 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
36769427 AGATTACAAG
36769437 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
36769458 ATCATATCTAAGATTGCGT
1 ATCATATCTAAGATTGCAT
36769477 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
* *
36769496 ATCAAATCTAAGATTGTAT
1 ATCATATCTAAGATTGCAT
36769515 ATC
1 ATC
36769518 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
19 47 0.84
20 1 0.02
21 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:36770245 original size:87 final size:87
Alignment explanation
Indices: 36769920--36770424 Score: 256
Period size: 87 Copynumber: 5.8 Consensus size: 87
36769910 GTTTTCTGAC
* ** **
36769920 AATAC-AGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGC
1 AATACAAGA-ATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTTAAATCTGC
* * *
36769983 TATGTTTTCGATTTGCTCCTTGTG
64 TATGTCTTCGATTTGTTCCTTGTA
* * * * *
36770007 AACACAAGGATGCCAAATCATCTTGGATTTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCT
1 AATACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTTAAATCTGCT
* *
36770071 ATG---T--ATCTGCTCTCCGTCG-A
65 ATGTCTTCGATTTG-T-TCC-TTGTA
** * ** * * *
36770091 AAT-GGA-AATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGTCAAAT
1 AATACAAGAATGCCA-A---ATCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTTAAAT
36770154 CTGCTATGTCTTCGATTTGTTCCTTGTA
60 CTGCTATGTCTTCGATTTGTTCCTTGTA
* * * *
36770182 AATACAAGAATGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTA
1 AATACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTTAAATCTGCTA
* * * *
36770247 TGTACCT-G--CT-CTCCATCG-A
66 TGT-CTTCGATTTGTTCC-TTGTA
** * * * ** * * *
36770266 AAT-GGAG-ATGCTAGATCTGTTATCTTAGATCTGCTTTGGTGTGAGAACATCCGAAAGTAAAAT
1 AATACAAGAATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTTAAAT
* *
36770329 TTACTATGTCTTCGATTTGTTCCTTGTA
60 CTGCTATGTCTTCGATTTGTTCCTTGTA
* * * * *
36770357 AACACAAGAACGCAAAATCATCTTGGATCTGCTTCAGTATAAACATCT-AAAGGTTAGACCTGCT
1 AATACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAA-GTTAAATCTGCT
36770421 ATGT
65 ATGT
36770425 ACCTGCTCTC
Statistics
Matches: 300, Mismatches: 81, Indels: 74
0.66 0.18 0.16
Matches are distributed among these distances:
82 18 0.06
83 4 0.01
84 13 0.04
85 5 0.02
86 40 0.13
87 91 0.30
88 49 0.16
89 38 0.13
90 5 0.02
91 14 0.05
92 5 0.02
93 18 0.06
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (87 bp):
AATACAAGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTTAAATCTGCTA
TGTCTTCGATTTGTTCCTTGTA
Found at i:36770268 original size:175 final size:175
Alignment explanation
Indices: 36769968--36770537 Score: 881
Period size: 175 Copynumber: 3.3 Consensus size: 175
36769958 GTAAACACGT
* * * * * *
36769968 GAAAGCCAAATCTGCTATGTTTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
36770033 ATTTGCTTCAGTA-AAATCATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
* * * *
36770097 AATGCCAGATCTATTATCTTGGATCTGCTTTGGTGTAAGAACATCC
130 GATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* *
36770143 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAATACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
36770208 ATCTACTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCATCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
*
36770273 ATGCTAGATCTGTTATCTTAGATCTGCTTTGGTGTGAGAACATCC
131 ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * * *
36770318 GAAAGTAAAATTTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAACGCAAAATCATCTTGG
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
*
36770383 ATCTGCTTCAGTATAAACATCTAAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
*
36770448 ATGCTAGATCTGTTATCTTGGATCTACTTTGGTGTGAGAACATCC
131 ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * *
36770493 GAAAATCAGATCTACTATGTCTTCGATTTGTTCCCTGTAAACACA
1 GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACA
36770538 GGGACACCAA
Statistics
Matches: 362, Mismatches: 32, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
175 359 0.99
176 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (175 bp):
GAAAGTCAAATCTACTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
ATGCTAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:36770568 original size:44 final size:43
Alignment explanation
Indices: 36770502--36770816 Score: 208
Period size: 44 Copynumber: 7.1 Consensus size: 43
36770492 CGAAAATCAG
* **
36770502 ATCTACTATGTCTTCGATTTGTTCCCTGTAAACACAGGGACACCAA
1 ATCTACTA--TCTTCGA-TTGTTCCCTATAAACACAGGGATGCCAA
* * *
36770548 ATCTACTATCTTCAACTTGTTCCTTATAAACACAGGGATGCCAT
1 ATCTACTATCTTCGA-TTGTTCCCTATAAACACAGGGATGCCAA
* ** * * * * * * *
36770592 GT-TAAAATCTTTGATCTGTTTCGCTGTAAGCACAGGAATGTCAG
1 ATCTACTATCTTCGAT-TG-TTCCCTATAAACACAGGGATGCCAA
*
36770636 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTACTATCTTCGAT-TGTTCCCTATAAACACAGGGATGCCAA
* * *
36770680 ATCTGCTATCTTCAACTTGTTCCCTATAAACACAAGGATGCC--
1 ATCTACTATCTTCGA-TTGTTCCCTATAAACACAGGGATGCCAA
* * * * * *
36770722 ATGCTGA-AATCTTCGATATGCTTCGCTGTAAGCACA-GGAGTGTCAG
1 AT-CT-ACTATCTTCGAT-TG-TTCCCTATAAACACAGGGA-TGCCAA
* *
36770768 ATCTGCTATCTTTGATCTGTTTCCCTATAAACACAGGGATGCCAA
1 ATCTACTATCTTCGAT-TG-TTCCCTATAAACACAGGGATGCCAA
36770813 ATCT
1 ATCT
36770817 TGTTTCTTTG
Statistics
Matches: 207, Mismatches: 49, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
42 4 0.02
43 24 0.12
44 121 0.58
45 45 0.22
46 13 0.06
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (43 bp):
ATCTACTATCTTCGATTGTTCCCTATAAACACAGGGATGCCAA
Found at i:36770666 original size:132 final size:132
Alignment explanation
Indices: 36770498--36770816 Score: 476
Period size: 132 Copynumber: 2.4 Consensus size: 132
36770488 CATCCGAAAA
* * * **
36770498 TCAGATCTACTATGTCTTCGATTTGTTCCCTGTAAACACAGGGACACCAAATCTACTATCTTCAA
1 TCAGATCTGCTA--TCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAA
* * * * * *
36770563 CTTGTTCCTTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGG
64 CTTGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATATGCTTCGCTGTAAGCACAGG
36770628 AATG
129 AATG
*
36770632 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
* *
36770697 TGTTCCCTATAAACACAAGGATGCCATGCTGAAATCTTCGATATGCTTCGCTGTAAGCACAGGAG
66 TGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATATGCTTCGCTGTAAGCACAGGAA
36770762 TG
131 TG
*
36770764 TCAGATCTGCTATCTTTGATCTGTTTCCCTATAAACACAGGGATGCCAAATCT
1 TCAGATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAAATCT
36770817 TGTTTCTTTG
Statistics
Matches: 169, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
132 129 0.76
133 29 0.17
134 11 0.07
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.32
Consensus pattern (132 bp):
TCAGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTACTATCTTCAACT
TGTTCCCTATAAACACAAGGATGCCATGCTAAAATCTTCGATATGCTTCGCTGTAAGCACAGGAA
TG
Found at i:36773013 original size:6 final size:6
Alignment explanation
Indices: 36773002--36773029 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
36772992 AATATGATCT
36773002 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
36773030 GAAATGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:36778350 original size:19 final size:19
Alignment explanation
Indices: 36778280--36778405 Score: 175
Period size: 19 Copynumber: 6.5 Consensus size: 19
36778270 AAATTAAATC
* *
36778280 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
36778300 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
36778321 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
36778342 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36778361 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
36778378 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36778397 TCTAAGATT
1 TCTAAGATT
36778406 ATATTTCTGT
Statistics
Matches: 100, Mismatches: 2, Indels: 9
0.90 0.02 0.08
Matches are distributed among these distances:
17 17 0.17
19 42 0.42
20 3 0.03
21 31 0.31
22 7 0.07
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36778357 original size:14 final size:15
Alignment explanation
Indices: 36778337--36778393 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
36778327 AGATTGCATA
36778337 TCATATCTAAGATTG
1 TCATATCTAAGATTG
36778352 CATATCATATCTAAGATTG
1 ----TCATATCTAAGATTG
36778371 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
36778388 -CATATC
1 TCATATC
36778394 ATATCTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.16
17 17 0.45
19 15 0.39
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.39
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:36778382 original size:36 final size:37
Alignment explanation
Indices: 36778294--36778409 Score: 173
Period size: 36 Copynumber: 3.1 Consensus size: 37
36778284 AGATTACAAG
36778294 ATCATATCTTCAAGATTGCATATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATCATATC-T-AAGATTG-AT
36778336 ATCATATCTAAGATTGCATATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGAT
36778372 ATCATATCTAAGATTGCATATCATATCTAAGATT-AT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGAT
36778408 AT
1 AT
36778410 TTCTGTATGA
Statistics
Matches: 73, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
36 38 0.52
38 7 0.10
39 1 0.01
40 18 0.25
41 1 0.01
42 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGAT
Found at i:36791562 original size:55 final size:56
Alignment explanation
Indices: 36791456--36791565 Score: 154
Period size: 55 Copynumber: 2.0 Consensus size: 56
36791446 TCTTACATGT
* * *
36791456 AATCACATATCGATGCCACTGTCCTAGACAGGGTCTTACTCGCACAGATATATCGG
1 AATCACATATCGATGCCACTGTCATAAACAGGGTCTTACTCGCACACATATATCGG
36791512 AATCACATATCGATGCCAAC-GT-ATAAAC-GTGGTCTTACTCGCACACATATATCG
1 AATCACATATCGATGCC-ACTGTCATAAACAG-GGTCTTACTCGCACACATATATCG
36791566 ATGCCATGGT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
54 1 0.02
55 27 0.55
56 19 0.39
57 2 0.04
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (56 bp):
AATCACATATCGATGCCACTGTCATAAACAGGGTCTTACTCGCACACATATATCGG
Found at i:36792098 original size:32 final size:32
Alignment explanation
Indices: 36792057--36792121 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
36792047 CAACATTCCC
36792057 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
1 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
36792089 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
1 ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
36792121 A
1 A
36792122 GTCCATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (32 bp):
ATGTTAGGCTGAATGTTCCTAGTGTTCATACA
Found at i:36796820 original size:41 final size:41
Alignment explanation
Indices: 36796747--36796828 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
36796737 GACGAACTGA
* * *
36796747 CATGCGAACCCTTACCTATTATGTATGTGAACCCTCATAAT
1 CATGCAAACCCTTACCTATTATATATGCGAACCCTCATAAT
* *
36796788 CATGCAAACCCTTACTTGTTATATATGCGAACCCTCATAAT
1 CATGCAAACCCTTACCTATTATATATGCGAACCCTCATAAT
36796829 TTTGAGAACC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (41 bp):
CATGCAAACCCTTACCTATTATATATGCGAACCCTCATAAT
Found at i:36797319 original size:27 final size:26
Alignment explanation
Indices: 36797289--36797345 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
36797279 ATGAATGTCT
* *
36797289 TTTGGCGAACTATGTTTGCAGATATG
1 TTTGGCGAACTATGTTTACAAATATG
* *
36797315 ATTTGGTGAACTTTGTTTACAAATATG
1 -TTTGGCGAACTATGTTTACAAATATG
36797342 TTTG
1 TTTG
36797346 TTAAAGTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.25, C:0.09, G:0.23, T:0.44
Consensus pattern (26 bp):
TTTGGCGAACTATGTTTACAAATATG
Found at i:36802354 original size:17 final size:16
Alignment explanation
Indices: 36802335--36802372 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
36802325 AAAAAAGTGG
36802335 AAAAAAT-AGAAAAAT
1 AAAAAATAAGAAAAAT
36802350 AGAAAAATAAGAAAAAAT
1 A-AAAAATAAG-AAAAAT
36802368 AAAAA
1 AAAAA
36802373 TAAAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 6 0.30
17 6 0.30
18 7 0.35
ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11
Consensus pattern (16 bp):
AAAAAATAAGAAAAAT
Found at i:36802355 original size:7 final size:8
Alignment explanation
Indices: 36802336--36802381 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
36802326 AAAAAGTGGA
36802336 AAAAATAG
1 AAAAATAG
36802344 AAAAATAG
1 AAAAATAG
36802352 AAAAATAAG
1 AAAAAT-AG
*
36802361 AAAAA-AT
1 AAAAATAG
36802368 AAAAATA-
1 AAAAATAG
36802375 AAAAATA
1 AAAAATA
36802382 TCTATGGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
7 13 0.37
8 15 0.43
9 7 0.20
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (8 bp):
AAAAATAG
Found at i:36804545 original size:2 final size:2
Alignment explanation
Indices: 36804523--36804573 Score: 81
Period size: 2 Copynumber: 27.0 Consensus size: 2
36804513 ATGTTTTAAC
36804523 TA TA T- TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36804562 TA TA TA TA TA TA
1 TA TA TA TA TA TA
36804574 AACTAAAGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 3 0.07
2 43 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:36804555 original size:47 final size:43
Alignment explanation
Indices: 36804466--36804558 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 43
36804456 AATCTAAGAT
36804466 TTTTATGTTTAATATATTATTATATTATTATATAATAAATATA
1 TTTTATGTTTAATATATTATTATATTATTATATAATAAATATA
*
36804509 TTTTATGTTTTAACTATATTATATTATATTATATATATATATATATATA
1 TTTTATG-TTTAA-TATA-T-TATTATATTAT-TATATA-ATAAATATA
36804558 T
1 T
36804559 ATATATATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 7 0.16
44 5 0.12
45 4 0.09
46 1 0.02
47 11 0.26
48 6 0.14
49 9 0.21
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (43 bp):
TTTTATGTTTAATATATTATTATATTATTATATAATAAATATA
Found at i:36805631 original size:12 final size:12
Alignment explanation
Indices: 36805614--36805638 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36805604 GCCGACTACT
36805614 GTTACTGTTACC
1 GTTACTGTTACC
36805626 GTTACTGTTACC
1 GTTACTGTTACC
36805638 G
1 G
36805639 GTTCGACACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:36805750 original size:46 final size:47
Alignment explanation
Indices: 36805695--36805784 Score: 128
Period size: 46 Copynumber: 1.9 Consensus size: 47
36805685 TACTATTTCA
* * *
36805695 GATTCGTTCCGATGAGGTACT-TGTGTACTGCACTGTTACTGTTCCG
1 GATTCGTTCCGATGAGGTACTCTGTGAACCGCACTGCTACTGTTCCG
* *
36805741 GATTTGTTCCGATGAGGTACTCTGTGAACCGTACTGCTACTGTT
1 GATTCGTTCCGATGAGGTACTCTGTGAACCGCACTGCTACTGTT
36805785 ATTGTTACTG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
46 20 0.53
47 18 0.47
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.37
Consensus pattern (47 bp):
GATTCGTTCCGATGAGGTACTCTGTGAACCGCACTGCTACTGTTCCG
Found at i:36805944 original size:36 final size:36
Alignment explanation
Indices: 36805904--36805974 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
36805894 GGAACTGAAA
*
36805904 ATATC-GACTATTATTGAATAATTTAATTGTTACTGT
1 ATATCTGACTATTACTGAATAA-TTAATTGTTACTGT
* * *
36805940 ATATCTGATTTTTACTGAATAATTGATTGTTACTG
1 ATATCTGACTATTACTGAATAATTAATTGTTACTG
36805975 GATAACCGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 17 0.57
37 13 0.43
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (36 bp):
ATATCTGACTATTACTGAATAATTAATTGTTACTGT
Found at i:36805956 original size:18 final size:18
Alignment explanation
Indices: 36805918--36806056 Score: 82
Period size: 18 Copynumber: 7.2 Consensus size: 18
36805908 CGACTATTAT
*
36805918 TGAATAATTTAATTGTTAC
1 TGAATAA-TTGATTGTTAC
* *
36805937 TGTAT-ATCTGATTTTTAC
1 TGAATAAT-TGATTGTTAC
36805955 TGAATAATTGATTGTTAC
1 TGAATAATTGATTGTTAC
*
36805973 TGGATAACCGATCAATTGATTGATAC
1 T-G---A---AT-AATTGATTGTTAC
** * *
36805999 TGAATAGCTGATTATTAT
1 TGAATAATTGATTGTTAC
36806017 TGAATAATTGATTGTTAC
1 TGAATAATTGATTGTTAC
* * *
36806035 CGAATAACTGACTGTTAC
1 TGAATAATTGATTGTTAC
36806053 TGAA
1 TGAA
36806057 AAAAAATAAT
Statistics
Matches: 91, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
17 1 0.01
18 63 0.69
19 9 0.10
22 2 0.02
25 3 0.03
26 13 0.14
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (18 bp):
TGAATAATTGATTGTTAC
Done.