Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 120 of 318
Found at i:36813402 original size:40 final size:39
Alignment explanation
Indices: 36813240--36813404 Score: 267
Period size: 39 Copynumber: 4.2 Consensus size: 39
36813230 GATGTGTATG
*
36813240 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
36813279 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
* * *
36813318 ATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
*
36813357 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 ATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCA
*
36813397 TTTGTGCG
1 ATTGTGCG
36813405 GGTTACCATA
Statistics
Matches: 116, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
Found at i:36813420 original size:40 final size:39
Alignment explanation
Indices: 36813240--36813435 Score: 257
Period size: 39 Copynumber: 5.0 Consensus size: 39
36813230 GATGTGTATG
* *
36813240 ATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
*
36813279 ATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
* *
36813318 ATGGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCA
1 ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
* *
36813357 ATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCA
1 ATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCA
* * ** * *
36813397 TTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 ATTGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
36813436 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 99 0.71
40 41 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (39 bp):
ATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCA
Found at i:36815505 original size:29 final size:29
Alignment explanation
Indices: 36815411--36815483 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
36815401 GTGACGAGAT
36815411 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36815440 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
36815469 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
36815484 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:36815579 original size:2 final size:2
Alignment explanation
Indices: 36815574--36815602 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
36815564 GTGTGCGTAC
36815574 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36815603 CTCCGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36822426 original size:68 final size:66
Alignment explanation
Indices: 36822295--36822421 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 66
36822285 AGCCAATTTA
* * *
36822295 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACAT-G-ATCACACATGCGACCTAGCTACATT
36822360 TTC
64 TTC
* *
36822363 TCTCGTAGCTCTCTTGTCTACATGG-GATACATCCCAT-ATCACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACATGATCACACATGCGACCTAGCTAC
36822422 TACATAGTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
65 21 0.40
67 1 0.02
68 31 0.58
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (66 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACATGATCACACATGCGACCTAGCTACATTTT
C
Found at i:36828952 original size:18 final size:18
Alignment explanation
Indices: 36828929--36828984 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
36828919 TTACTTTTAA
36828929 TTTCAATATTTACTCCAC
1 TTTCAATATTTACTCCAC
** *
36828947 TTTCAATATTTACTTTAA
1 TTTCAATATTTACTCCAC
36828965 TTTCAATATTTACTCCAC
1 TTTCAATATTTACTCCAC
36828983 TT
1 TT
36828985 GAAATTCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTCAATATTTACTCCAC
Found at i:36832724 original size:21 final size:21
Alignment explanation
Indices: 36832682--36832731 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
36832672 CAATTATTTG
* ***
36832682 TATCTGGTAGCTTGTTTGCAT
1 TATCTGGTGGCTTGTCCACAT
36832703 TATCTGGTGGCTTGTCCACAT
1 TATCTGGTGGCTTGTCCACAT
36832724 TAT-TGGTG
1 TATCTGGTG
36832732 TGTTAATGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (21 bp):
TATCTGGTGGCTTGTCCACAT
Found at i:36833855 original size:13 final size:13
Alignment explanation
Indices: 36833837--36833861 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36833827 AACTTTAGAT
36833837 TGTGAAACTATAC
1 TGTGAAACTATAC
36833850 TGTGAAACTATA
1 TGTGAAACTATA
36833862 GATATGACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTGAAACTATAC
Found at i:36834793 original size:19 final size:19
Alignment explanation
Indices: 36834757--36834795 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36834747 TTTTCACCAT
* *
36834757 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
36834776 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
36834795 A
1 A
36834796 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:36835345 original size:28 final size:27
Alignment explanation
Indices: 36835259--36835348 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
36835249 GTGACAGAGT
*
36835259 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
36835288 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
36835315 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
36835343 CACCAG
1 CACCAG
36835349 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:36835501 original size:28 final size:28
Alignment explanation
Indices: 36835454--36835517 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36835444 AAATTAACCC
*
36835454 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
36835482 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
36835510 TAGGGGTA
1 TAGGGGTA
36835518 CTCTAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:36838411 original size:21 final size:21
Alignment explanation
Indices: 36838387--36838426 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
36838377 GTTTTGTAAT
*
36838387 TTAATGAAAAATTAAAACAAA
1 TTAAAGAAAAATTAAAACAAA
*
36838408 TTAAAGAAAGATTAAAACA
1 TTAAAGAAAAATTAAAACA
36838427 TTTTTATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (21 bp):
TTAAAGAAAAATTAAAACAAA
Found at i:36839403 original size:36 final size:36
Alignment explanation
Indices: 36839348--36839429 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 36
36839338 ACTCCCTATT
* *
36839348 TTGGCGTGTTTTCGGTTGGACTAGCTCTTCGGAGCAA
1 TTGGCGTG-TATCGGTTGGACTAGCTCTTAGGAGCAA
* * *
36839385 TTGGCGTGTATCGGTTGGATTAGCTCTTATGAGCAT
1 TTGGCGTGTATCGGTTGGACTAGCTCTTAGGAGCAA
36839421 TTGGCGTGT
1 TTGGCGTGT
36839430 TTTCGAATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 32 0.80
37 8 0.20
ACGTcount: A:0.13, C:0.16, G:0.33, T:0.38
Consensus pattern (36 bp):
TTGGCGTGTATCGGTTGGACTAGCTCTTAGGAGCAA
Found at i:36841412 original size:21 final size:20
Alignment explanation
Indices: 36841388--36841429 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
36841378 TGAAATGCAA
36841388 TCAAACCAA-CATGAATTAAAT
1 TCAAACCAAGC-TG-ATTAAAT
*
36841409 TCAAGCCAAGCTGATTAAAT
1 TCAAACCAAGCTGATTAAAT
36841429 T
1 T
36841430 AACCATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 10 0.53
22 1 0.05
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (20 bp):
TCAAACCAAGCTGATTAAAT
Found at i:36845592 original size:93 final size:93
Alignment explanation
Indices: 36845480--36845651 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
36845470 CGCCCATAAG
* *
36845480 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36845545 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36845573 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36845638 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36845652 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36845648 original size:46 final size:46
Alignment explanation
Indices: 36845473--36845648 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
36845463 TGTAACCCGC
* * *
36845473 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36845519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36845569 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36845612 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36845649 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36848078 original size:30 final size:30
Alignment explanation
Indices: 36848034--36848122 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
36848024 CAAAGATAAC
36848034 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
36848063 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
36848093 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
36848123 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:36848082 original size:15 final size:15
Alignment explanation
Indices: 36848034--36848113 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
36848024 CAAAGATAAC
*
36848034 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
36848048 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
36848063 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
36848078 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
36848093 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
36848108 AAGAAA
1 AAGAAA
36848114 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:36848122 original size:15 final size:15
Alignment explanation
Indices: 36848045--36848122 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
36848035 AGAAAACCGA
36848045 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
36848060 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
36848074 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
36848089 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
36848105 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
36848120 ATA
1 ATA
36848123 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:36851204 original size:93 final size:93
Alignment explanation
Indices: 36851075--36851246 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
36851065 CGCCCATAAG
* * *
36851075 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36851140 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36851168 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36851233 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36851247 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36851243 original size:46 final size:46
Alignment explanation
Indices: 36851068--36851243 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
36851058 TGTAACCCGC
* * * *
36851068 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36851114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36851164 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36851207 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36851244 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36851262 original size:46 final size:46
Alignment explanation
Indices: 36851117--36851255 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
36851107 TTCGCATCCA
36851117 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
36851165 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
36851210 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
36851256 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:36853693 original size:54 final size:54
Alignment explanation
Indices: 36853634--36853742 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
36853624 AATAACAATT
36853634 AATAATTAATATAATGCATATTAAATTATTATTTGCTATATAAAACTAATCCTA
1 AATAATTAATATAATGCATATTAAATTATTATTTGCTATATAAAACTAATCCTA
36853688 AATAATTAATATAATGCATATTAAATTATTATTTGCTATATAAAACTAATCCTA
1 AATAATTAATATAATGCATATTAAATTATTATTTGCTATATAAAACTAATCCTA
36853742 A
1 A
36853743 CTCTATATAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (54 bp):
AATAATTAATATAATGCATATTAAATTATTATTTGCTATATAAAACTAATCCTA
Found at i:36861363 original size:29 final size:29
Alignment explanation
Indices: 36861222--36861351 Score: 174
Period size: 29 Copynumber: 4.5 Consensus size: 29
36861212 GACAAGATTG
* * *
36861222 GCACTAAGTGTGCGAGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
36861252 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
36861280 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36861309 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
36861338 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36861352 GATTCACTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.55
30 16 0.18
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:36862846 original size:29 final size:29
Alignment explanation
Indices: 36862731--36862834 Score: 158
Period size: 29 Copynumber: 3.6 Consensus size: 29
36862721 GTTACAATTT
* * *
36862731 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
36862759 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36862788 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36862817 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36862835 GATTCACTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.28
29 49 0.69
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:36864339 original size:29 final size:29
Alignment explanation
Indices: 36864224--36864327 Score: 158
Period size: 29 Copynumber: 3.6 Consensus size: 29
36864214 GTTACAATTT
* * *
36864224 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
36864252 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36864281 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36864310 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36864328 GATTCACTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.28
29 49 0.69
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:36865832 original size:29 final size:29
Alignment explanation
Indices: 36865717--36865820 Score: 158
Period size: 29 Copynumber: 3.6 Consensus size: 29
36865707 GTTACAATTT
* * *
36865717 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
36865745 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36865774 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36865803 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36865821 GATTCACTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.28
29 49 0.69
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:36867325 original size:29 final size:29
Alignment explanation
Indices: 36867210--36867313 Score: 158
Period size: 29 Copynumber: 3.6 Consensus size: 29
36867200 GTTACAATTT
* * *
36867210 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
36867238 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36867267 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36867296 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36867314 GATTCACTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.28
29 49 0.69
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:36868788 original size:29 final size:29
Alignment explanation
Indices: 36868703--36868805 Score: 149
Period size: 28 Copynumber: 3.6 Consensus size: 29
36868693 GTTATAATTT
* * *
36868703 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-CTGAAAATA
36868731 TATAGCACTAAGTGT-CGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36868759 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGCTGAAAATA
36868788 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36868806 GATTCACTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
26 2 0.03
27 4 0.06
28 32 0.46
29 31 0.45
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGCTGAAAATA
Found at i:36870310 original size:29 final size:29
Alignment explanation
Indices: 36870195--36870298 Score: 158
Period size: 29 Copynumber: 3.6 Consensus size: 29
36870185 GTTACAATTT
* *
36870195 TATAGCACTAAGTGTGCGAGTTTG--ATTC
1 TATAGCACTAAGTGTGCGAG-TTGAAAATA
*
36870223 TATAGCACTAAGTGTGCGAGCTGAAAATA
1 TATAGCACTAAGTGTGCGAGTTGAAAATA
36870252 TATAGCACTAAGTGTGCGAGTTGAAAATA
1 TATAGCACTAAGTGTGCGAGTTGAAAATA
36870281 TATAGCACTAAGTGTGCG
1 TATAGCACTAAGTGTGCG
36870299 GATTCACTAT
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
27 2 0.03
28 20 0.29
29 48 0.69
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (29 bp):
TATAGCACTAAGTGTGCGAGTTGAAAATA
Found at i:36874326 original size:40 final size:40
Alignment explanation
Indices: 36874241--36874391 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
36874231 AATTGAATGA
* * *
36874241 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
36874281 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
36874322 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
36874361 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
36874392 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:36874405 original size:40 final size:40
Alignment explanation
Indices: 36874278--36874407 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
36874268 ATGCTGGAAA
* * * *
36874278 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
36874318 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
36874358 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
36874398 TTATATCCGG
1 TTATATCCGG
36874408 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:36882420 original size:40 final size:39
Alignment explanation
Indices: 36882255--36882438 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
36882245 AAATTGAATG
* * *
36882255 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
36882295 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
36882335 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
36882375 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
36882414 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
36882439 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:36882463 original size:80 final size:81
Alignment explanation
Indices: 36882295--36882483 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
36882285 GCTGGAAATT
* * * *
36882295 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
36882360 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
36882376 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
36882439 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
36882455 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
36882484 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:36884076 original size:37 final size:37
Alignment explanation
Indices: 36883987--36884076 Score: 117
Period size: 37 Copynumber: 2.4 Consensus size: 37
36883977 TAAGTTTGAC
* *
36883987 ACCCAATGTCTCATCAGTTAAACCAAAGTAAATTGGA
1 ACCCAATGTCTCATCGGTTAAACCAAAGCAAATTGGA
* * *
36884024 ACCCAGTGTCTCATCGGTTAAACTAGAGCAAATTGGA
1 ACCCAATGTCTCATCGGTTAAACCAAAGCAAATTGGA
* *
36884061 ACCCATTGCCTCATCG
1 ACCCAATGTCTCATCG
36884077 ACTCATAGTC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (37 bp):
ACCCAATGTCTCATCGGTTAAACCAAAGCAAATTGGA
Found at i:36893675 original size:48 final size:47
Alignment explanation
Indices: 36893609--36893778 Score: 166
Period size: 48 Copynumber: 3.6 Consensus size: 47
36893599 AAGCTGACGC
* * * * *
36893609 CATGTCCCAAATAGGTCTTACACTAGCTTGTGTATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AGTATCTCGAGGCCGATG
* * * * *
36893657 CATGTCCTAGACATGTCTTACACTAGCTCTCG--TCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TAGTATCTCGAGGCCGATG
* * *
36893703 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGACTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-AGTATCTCGAGGCCGATG
36893751 CATG-CACCAGACATGTCTTACACTAGCT
1 CATGTC-CCAGACATGTCTTACACTAGCT
36893779 CACATATCAC
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 37 0.37
47 1 0.01
48 60 0.60
49 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAGTATCTCGAGGCCGATG
Found at i:36893675 original size:92 final size:94
Alignment explanation
Indices: 36893509--36893680 Score: 233
Period size: 93 Copynumber: 1.9 Consensus size: 94
36893499 GTTAAAATGT
* * * *
36893509 TGACGCCATGTCCCAGACACGGTCTTACACTGGCTTTCATATAGCGTGGCTGATGCCATGTCCCA
1 TGACGCCATGTCCCAAACACGGTCTTACACTAGCTTTCATATAGCGAGGCCGATGCCATGTCCCA
36893574 GACAGGTCTTACACTGACACACTACAAGC
66 GACAGGTCTTACACTGACACACTACAAGC
* * * *
36893603 TGACGCCATGTCCCAAATA-GGTCTTACACTAGCTTGT-GTATCGCGAGGCCGATG-CATGTCCT
1 TGACGCCATGTCCCAAACACGGTCTTACACTAGCTT-TCATATAGCGAGGCCGATGCCATGTCCC
*
36893665 AGACATGTCTTACACT
65 AGACAGGTCTTACACT
36893681 AGCTCTCGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
92 22 0.32
93 28 0.41
94 18 0.26
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (94 bp):
TGACGCCATGTCCCAAACACGGTCTTACACTAGCTTTCATATAGCGAGGCCGATGCCATGTCCCA
GACAGGTCTTACACTGACACACTACAAGC
Found at i:36893709 original size:94 final size:94
Alignment explanation
Indices: 36893609--36893779 Score: 236
Period size: 94 Copynumber: 1.8 Consensus size: 94
36893599 AAGCTGACGC
* *** * *
36893609 CATGTCCCAAATAGGTCTTACACTAGCTTGTGTATCGCGAGGCCGATGCATGTC-CTAGACATGT
1 CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATG-CACCAGACATGT
36893673 CTTACACTAGCTCTCGTCTCAATGCCAATG
65 CTTACACTAGCTCTCGTCTCAATGCCAATG
* * * *
36893703 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTCGAGACTGATGCATGCACCAGACATGTC
1 CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATGCACCAGACATGTC
36893768 TTACACTAGCTC
66 TTACACTAGCTC
36893780 ACATATCACC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
93 1 0.02
94 65 0.98
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
CATGTCCCAAACAGGTCTTACACTAGCTTAAATATCGCGAGACCGATGCATGCACCAGACATGTC
TTACACTAGCTCTCGTCTCAATGCCAATG
Found at i:36900154 original size:40 final size:40
Alignment explanation
Indices: 36900095--36900279 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
36900085 CATTTGAATG
*
36900095 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
36900135 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
36900175 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
36900215 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTT-TCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGT-T
* *
36900255 ATGTCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
36900280 ATTAATTGGG
Statistics
Matches: 137, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:36902121 original size:39 final size:39
Alignment explanation
Indices: 36902040--36902202 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
36902030 TATGGTAACC
* *
36902040 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
36902080 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36902119 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36902158 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
36902197 CGCACA
1 CGCACA
36902203 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:36910050 original size:39 final size:39
Alignment explanation
Indices: 36909969--36910131 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
36909959 TATGGTAACC
* *
36909969 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
36910009 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36910048 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
36910087 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
36910126 CGCACA
1 CGCACA
36910132 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:36917235 original size:40 final size:40
Alignment explanation
Indices: 36917190--36917285 Score: 165
Period size: 40 Copynumber: 2.4 Consensus size: 40
36917180 GTTCATCGGA
*
36917190 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
*
36917230 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATGTCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
*
36917270 TTAAGACCCGAAGGCA
1 CTAAGACCCGAAGGCA
36917286 ATTAATTGGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
Found at i:36924189 original size:26 final size:27
Alignment explanation
Indices: 36924135--36924192 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
36924125 CTCATTAACA
**
36924135 AATTTATTAATTTTTAACCTATTTATT
1 AATTTATTAATTTGCAACCTATTTATT
* *
36924162 AATTTATTAA-TTGCAATCTATTTGTT
1 AATTTATTAATTTGCAACCTATTTATT
36924188 AATTT
1 AATTT
36924193 TTTTTCATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (27 bp):
AATTTATTAATTTGCAACCTATTTATT
Found at i:36935412 original size:96 final size:95
Alignment explanation
Indices: 36935238--36935515 Score: 396
Period size: 96 Copynumber: 2.9 Consensus size: 95
36935228 TTGGGTGATC
*
36935238 TATGTGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAA
1 TATGTGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAG
* * *
36935302 ACCATGTTTGGGACATGGCATCGTCATTGA
66 ACCATGTCTAGGACATGGCATCGGCATTGA
* *
36935332 TATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAAAGCCAATGTAA
1 TATGTGC-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
36935397 GACCATGTCTAGGACATGGCATCGGCATTGA
65 GACCATGTCTAGGACATGGCATCGGCATTGA
* * * ** * * * *
36935428 TATGTGCGCTAGTGTAAAACCATGTCTGGGACATGGCATCGACAATGAGACGAGAGCTAGTGTAC
1 TATGTGC-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
36935493 GACCATGTCTAGGACATGGCATC
65 GACCATGTCTAGGACATGGCATC
36935516 AACCTCGACA
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
94 7 0.04
95 1 0.01
96 156 0.95
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (95 bp):
TATGTGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAG
ACCATGTCTAGGACATGGCATCGGCATTGA
Found at i:36935508 original size:144 final size:144
Alignment explanation
Indices: 36935243--36935515 Score: 370
Period size: 144 Copynumber: 1.9 Consensus size: 144
36935233 TGATCTATGT
* *
36935243 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAAACCATG
* * * * * * *
36935308 TTTGGGACATGGCATCGTCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCG
66 TCTGGGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCG
36935373 GCCACAACATGAAA
131 GCCACAACATGAAA
** * * * *
36935387 GCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATATGTGCGCTAGTGTAAAACCAT
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCA-CAACATGAGAGCCAGTGTAAAACCAT
*
36935451 GTCTGGGACATGGCATCGACAATGAGACGAG-AGCTAGTGTACGACCATGTCTAGGACATGGCAT
65 GTCTGGGACATGGCATCGACAATGAGACGAGCA-CTAGTGTAAGACCATGTCTAGGACATGGCAT
36935515 C
129 C
36935516 AACCTCGACA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
143 3 0.03
144 108 0.97
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (144 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAAACCATG
TCTGGGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCG
GCCACAACATGAAA
Found at i:36935527 original size:144 final size:143
Alignment explanation
Indices: 36935243--36935567 Score: 364
Period size: 144 Copynumber: 2.3 Consensus size: 143
36935233 TGATCTATGT
* *
36935243 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGG-CACAACATGAGAGCCAGTGTAAAACCATG
* * * * * * * *
36935308 TTTGGGACATGGCATCGTCATTGATATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCG
65 TCTGGGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCA
*
36935373 GCCACAACATGAAA
130 ACCACAACATGAAA
** * * * *
36935387 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAAACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCA-CAACATGAGAGCCAGTGTAAAACCATG
*
36935452 TCTGGGACATGGCATCGACAATGAGACGAG-AGCTAGTGTACGACCATGTCTAGGACATGGCATC
65 TCTGGGACATGGCATCGACAATGAGACGAGCA-CTAGTGTAAGACCATGTCTAGGACATGGCATC
* * **
36935516 AACCTCGACATGTGA
129 AACCACAACATGAAA
** * * * *
36935531 GGTAATGTAAGACCATGTTTTGAACATAGCATCGGCA
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCA
36935568 ATTCACCCTC
Statistics
Matches: 151, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
143 3 0.02
144 148 0.98
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (143 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCACAACATGAGAGCCAGTGTAAAACCATGT
CTGGGACATGGCATCGACAATGAGACGAGCACTAGTGTAAGACCATGTCTAGGACATGGCATCAA
CCACAACATGAAA
Found at i:36935529 original size:96 final size:96
Alignment explanation
Indices: 36935238--36935566 Score: 392
Period size: 96 Copynumber: 3.4 Consensus size: 96
36935228 TTGGGTGATC
36935238 TATGTGC-C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
1 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
* * * *
36935301 AACCATGTTTGGGACATGGCATCGTCATTGA
66 GACCATGTCTAGGACATGGCATCGACATTGA
* * *
36935332 TATGTGCACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAAAGCCAATGTAA
1 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
*
36935397 GACCATGTCTAGGACATGGCATCGGCATTGA
66 GACCATGTCTAGGACATGGCATCGACATTGA
* * * ** * * * *
36935428 TATGTGCGCTAGTGTAAAACCATGTCTGGGACATGGCATCGACAATGAGACGAGAGCTAGTGTAC
1 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
* * *
36935493 GACCATGTCTAGGACATGGCATCAACCTCGA
66 GACCATGTCTAGGACATGGCATCGACATTGA
* * * * * * * *
36935524 CATGTGAGGTAATGTAAGACCATGTTTTGAACATAGCATCGGC
1 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
36935567 AATTCACCCT
Statistics
Matches: 201, Mismatches: 32, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
94 7 0.03
95 1 0.00
96 193 0.96
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (96 bp):
TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAACATGAGAGCCAGTGTAA
GACCATGTCTAGGACATGGCATCGACATTGA
Found at i:36935545 original size:48 final size:48
Alignment explanation
Indices: 36935246--36935567 Score: 283
Period size: 48 Copynumber: 6.7 Consensus size: 48
36935236 TCTATGTGCC
* *
36935246 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAACATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGACATGAGAGCT
* * * * * *
36935294 AGTGTAAAACCATGTTTGGGACATGGCATCGTCATTGATATGTGCA-CT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACATGAG-AGCT
* * *
36935342 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAACATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGACATGAGAGCT
* * * * * *
36935390 AATGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACATGAGAGCT
* * * *
36935438 AGTGTAAAACCATGTCTGGGACATGGCATCGACAAT-GAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGACATGAGAGCT
* * ** * * *
36935486 AGTGTACGACCATGTCTAGGACATGGCATCAACCTCGACATGTGAGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACATGAGAGCT
* * * * *
36935534 AATGTAAGACCATGTTTTGAACATAGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
36935568 ATTCACCCTC
Statistics
Matches: 215, Mismatches: 52, Indels: 14
0.77 0.19 0.05
Matches are distributed among these distances:
47 6 0.03
48 204 0.95
49 5 0.02
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGACATGAGAGCT
Found at i:36938294 original size:20 final size:20
Alignment explanation
Indices: 36938252--36938294 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
36938242 CATGGATGTA
*
36938252 TATGCTAGAAATTAGAAAGT
1 TATGCTAGAAAATAGAAAGT
*
36938272 TATGGTAGAAAAT-GAAAGAT
1 TATGCTAGAAAATAGAAAG-T
36938292 TAT
1 TAT
36938295 TGATAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.30
Consensus pattern (20 bp):
TATGCTAGAAAATAGAAAGT
Found at i:36940282 original size:123 final size:123
Alignment explanation
Indices: 36940063--36940401 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
36940053 GAATTATGTG
36940063 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
36940128 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
36940186 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
36940251 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
36940309 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
36940374 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
36940402 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:36940425 original size:40 final size:40
Alignment explanation
Indices: 36940370--36940613 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
36940360 TGAATGATAC
* * * * **
36940370 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
36940410 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
36940450 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
36940490 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
36940530 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
36940570 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
36940610 CCGG
1 CCGG
36940614 TTGTATTCCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:36946851 original size:123 final size:123
Alignment explanation
Indices: 36946632--36946970 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
36946622 GAATTATGTG
36946632 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
36946697 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
36946755 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
36946820 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
36946878 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
36946943 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
36946971 AATTATATCC
Statistics
Matches: 208, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 208 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:36947136 original size:40 final size:40
Alignment explanation
Indices: 36946939--36947142 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
36946929 TGAATGATAC
* * * * **
36946939 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
36946979 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
36947019 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
36947059 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
36947099 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
36947139 CCGG
1 CCGG
36947143 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 143 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:36954443 original size:40 final size:40
Alignment explanation
Indices: 36954359--36954655 Score: 357
Period size: 40 Copynumber: 7.5 Consensus size: 40
36954349 CGAATGGTAT
* * * * *
36954359 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
36954399 CCGGGTCAA-TCCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGT-CCCGAAGGCATTTGTGCGAGTTACCAAAA
*
36954439 CCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
36954479 CCGGGTTAAGT-CCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
36954518 CCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
36954558 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * * *
36954598 CCAGGCTAATTCCCGAAGGCAATTGTACGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
36954638 CCGAGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
36954656 ACAACCGAGC
Statistics
Matches: 228, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
39 39 0.17
40 181 0.79
41 8 0.04
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:36954684 original size:159 final size:159
Alignment explanation
Indices: 36954356--36954695 Score: 353
Period size: 159 Copynumber: 2.1 Consensus size: 159
36954346 ATCCGAATGG
* * *
36954356 TATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGGTCAATCCCCGAAGGCAT
1 TATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAAACCGGGTCAATCCCCGAAGGCAT
* * * * * * *
36954421 TTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACCAAAACCGGGTT
66 TTGTACGAGTTACCAAAACCAGGCTAAGTCCCGAAGGCAATTGTACGAATTACCAAAACCGAGCT
* *** * *
36954486 AAGTCCGAAGGCATTTGTGCGAGTTACCA
131 AAGTCCGAAGACAACCGAGCGAGTCACCA
* * * * *
36954515 AAACCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACCAAAACCGGGTTAAGT-CCCGAAGGC
1 TATCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAAACCGGGTCAA-TCCCCGAAGGC
* * * * *
36954578 ATTTGTACGAGTTACTAAATCCAGGCTAATTCCCGAAGGCAATTGTACGAATTACTATAACCGAG
64 ATTTGTACGAGTTACCAAAACCAGGCTAAGTCCCGAAGGCAATTGTACGAATTACCAAAACCGAG
* * *
36954643 CTATGTCCCGAAGACAACCGAGCGAGTCGCTA
129 CTAAGT-CCGAAGACAACCGAGCGAGTCACCA
* *
36954675 TATCC-GGTTAAATTCCGAAGG
1 TATCCGGGTTAAGTCCCGAAGG
36954696 TACGTGATTC
Statistics
Matches: 145, Mismatches: 33, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
159 118 0.81
160 27 0.19
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (159 bp):
TATCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAAACCGGGTCAATCCCCGAAGGCAT
TTGTACGAGTTACCAAAACCAGGCTAAGTCCCGAAGGCAATTGTACGAATTACCAAAACCGAGCT
AAGTCCGAAGACAACCGAGCGAGTCACCA
Found at i:36962624 original size:40 final size:40
Alignment explanation
Indices: 36962526--36962666 Score: 153
Period size: 40 Copynumber: 3.5 Consensus size: 40
36962516 TCCAAATGGT
* * * *
36962526 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
36962567 ATCCGGG-TCAATCCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
36962607 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATTACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
36962648 A-CCGAGCT-ATGTCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
36962667 ACAACCGAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 57 0.66
41 28 0.32
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:36968312 original size:19 final size:19
Alignment explanation
Indices: 36968288--36968326 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36968278 TTGTCAAATG
36968288 TCAACTTACCAAAGTCGTT
1 TCAACTTACCAAAGTCGTT
36968307 TCAACTTACCAAAGTCGTT
1 TCAACTTACCAAAGTCGTT
36968326 T
1 T
36968327 TGGGCCGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (19 bp):
TCAACTTACCAAAGTCGTT
Found at i:36972387 original size:42 final size:42
Alignment explanation
Indices: 36972311--36972434 Score: 144
Period size: 44 Copynumber: 2.9 Consensus size: 42
36972301 AATGCCTTTC
36972311 ATAGCCGAAGCTATCTC-ATTCTCGCACACTAAGTGCCATATAT
1 ATAGCCGAAGCTATCTCGA-T-TCGCACACTAAGTGCCATATAT
*
36972354 ATAGCCGAAGCTAT-TCCGATTCGCACACTAAGTGCTATATATAT
1 ATAGCCGAAGCTATCT-CGATTCGCACACTAAGTGC--CATATAT
* ** *
36972398 ATAGCCAAAGCTATCTCGAAACGTACACTAAGTGCCA
1 ATAGCCGAAGCTATCTCGATTCGCACACTAAGTGCCA
36972435 AACATAGTCG
Statistics
Matches: 70, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
42 17 0.24
43 16 0.23
44 36 0.51
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (42 bp):
ATAGCCGAAGCTATCTCGATTCGCACACTAAGTGCCATATAT
Found at i:36976192 original size:37 final size:37
Alignment explanation
Indices: 36976113--36976195 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
36976103 AACCTTTAGT
* * *
36976113 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
36976150 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
36976187 TCGGGTCTT
1 TCGGGTCTT
36976196 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:36976382 original size:47 final size:47
Alignment explanation
Indices: 36976313--36976797 Score: 808
Period size: 47 Copynumber: 10.3 Consensus size: 47
36976303 CCCTCCAGGA
* * * * *
36976313 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36976360 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36976407 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36976454 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
36976501 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36976548 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36976595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36976642 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36976689 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36976736 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36976783 CTTATCACATATATA
1 CTTATCACATATATA
36976798 TATATATCTC
Statistics
Matches: 416, Mismatches: 22, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 416 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36976391 original size:25 final size:25
Alignment explanation
Indices: 36976363--36976441 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
36976353 ACTCGGCCTT
*
36976363 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
36976388 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
36976410 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
36976435 ATCACAT
1 ATCACAT
36976442 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:36980084 original size:40 final size:40
Alignment explanation
Indices: 36980059--36980908 Score: 1405
Period size: 40 Copynumber: 21.2 Consensus size: 40
36980049 TTTCGCCCGA
*
36980059 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
36980099 ATATATCACTAGCACGAATGCTCTTCGGAAGTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
36980139 TTATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980179 ATATATCACTAGCACGAATGCTCTTCGGAAGTTAGCCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980219 TTATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCAG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
36980259 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980299 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
36980339 ATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* **
36980379 TTATATCACTAGCTTGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
** * * *
36980419 ATATATCACTAGCACGAATGCTCTTC-GAGGTTTCGCCCGA
1 ATATATCACTAGCACGAATGCTCTTCGGA-ACTTAGTCCGG
*
36980459 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980499 ATATATCACTAGCACGAATGCTCTTCGGAAGTTAGTCTGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980539 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
36980579 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
36980619 TTATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
36980659 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980699 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
36980739 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980779 TTATATCACTAGCATGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
* *
36980819 ATTTATCACTAGCACGAATGCTCTTCGAAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
*
36980859 TTATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
1 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
36980899 ATATATCACT
1 ATATATCACT
36980909 CTCAATTCTC
Statistics
Matches: 749, Mismatches: 59, Indels: 4
0.92 0.07 0.00
Matches are distributed among these distances:
39 2 0.00
40 745 0.99
41 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (40 bp):
ATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGG
Found at i:36982900 original size:37 final size:37
Alignment explanation
Indices: 36982820--36982903 Score: 132
Period size: 37 Copynumber: 2.3 Consensus size: 37
36982810 AAACCTTTAG
* * *
36982820 ATCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTC
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
*
36982857 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
36982894 ATCGGGTCTT
1 ATCGGGTCTT
36982904 TAGAGCTCGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.24
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
Found at i:36983090 original size:47 final size:47
Alignment explanation
Indices: 36983021--36983458 Score: 709
Period size: 47 Copynumber: 9.3 Consensus size: 47
36983011 CCCTTCGGGA
* * * * *
36983021 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36983068 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36983115 CTTATCACATATATGCACTTTCACATTCATCACAT-GGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CCATTAGGC
* *
36983162 CTTGTCACATATATACACTTTCACATTCAACACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36983209 CTTATCTCATATA-AGCACTTTCACATTCATCACAACGGCCATTAGGC
1 CTTATCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGC
36983256 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36983303 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36983350 CTTGTCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36983397 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36983444 CTTATCACATATATA
1 CTTATCACATATATA
36983459 TATCTCATAC
Statistics
Matches: 369, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 3 0.01
47 363 0.98
48 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36983099 original size:25 final size:25
Alignment explanation
Indices: 36983071--36983149 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
36983061 ACTCGGCCTT
*
36983071 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
36983096 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
36983118 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
36983143 ATCACAT
1 ATCACAT
36983150 GGCCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:36988731 original size:46 final size:46
Alignment explanation
Indices: 36988664--36988756 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
36988654 ATGCAAACAT
36988664 AGTTAGTTTACTAAGTTAAAATGTCAATAGATATAGAGGAAATGGA
1 AGTTAGTTTACTAAGTTAAAATGTCAATAGATATAGAGGAAATGGA
* * *
36988710 AGTTA-TTTCACTAAGTTAAAATTTCAATAGATGTAGAGGCAATGGA
1 AGTTAGTTT-ACTAAGTTAAAATGTCAATAGATATAGAGGAAATGGA
36988756 A
1 A
36988757 ATGAACATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
45 3 0.07
46 40 0.93
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.31
Consensus pattern (46 bp):
AGTTAGTTTACTAAGTTAAAATGTCAATAGATATAGAGGAAATGGA
Found at i:36990975 original size:47 final size:48
Alignment explanation
Indices: 36990902--36991219 Score: 243
Period size: 47 Copynumber: 6.7 Consensus size: 48
36990892 TTATTTGTGT
*
36990902 GCTAGTGTAAGA-CATGTCTGGAACAT-GCATCGTCCAC-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCACGATTATGAGA
* ** * * *
36990948 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGTATTGA-GACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCA-CGATTATGAGA
* *
36990996 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACGATTATG-AGA
* *
36991042 --TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCAC-GAT-TATGAGA
* * * *
36991090 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATT-TCGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCACGATTAT-GAGA
* **
36991139 GCCAGTGTAAGACCATGTCTAAGACATGGCATCG--AC--TTGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCACGATT-AT-GA-GA
* * *
36991186 GCCAGTATAAGACCATGTCTGAGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
36991220 GCATTATACC
Statistics
Matches: 223, Mismatches: 30, Indels: 37
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.05
45 17 0.08
46 33 0.15
47 64 0.29
48 27 0.12
49 35 0.16
50 32 0.14
51 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCACGATTATGAGA
Found at i:36991090 original size:94 final size:93
Alignment explanation
Indices: 36990902--36991172 Score: 278
Period size: 94 Copynumber: 2.8 Consensus size: 93
36990892 TTATTTGTGT
* * *
36990902 GCTAGTGTAAGACATGTCTGGAACATGCATCGTCCAC-ATTATG-AGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-TATGTAGA--TAGTGTAAGACCATG
* * **
36990965 TCTGGGACATGGCATTGGTATTGAGACGAGA
63 TCTGGGACATGGCATCGGCACGGAGACGAGA
*
36990996 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-ATAGTGTAAGACCATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGTAGATAGTGTAAGACCATGTCT
* *
36991060 GGGACATGGCATCGGCACGGATATGTGAGA
66 GGGACATGGCATCGGCACGGAGA--CGAGA
* * * * **
36991090 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCGATAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGATAT-G-TAGATAGTGTAAGACCAT
**
36991155 GTCTAAGACATGGCATCG
62 GTCTGGGACATGGCATCG
36991173 ACTTGATGGA
Statistics
Matches: 149, Mismatches: 19, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
92 36 0.24
94 53 0.36
95 16 0.11
96 12 0.08
97 1 0.01
98 2 0.01
99 29 0.19
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATATGTAGATAGTGTAAGACCATGTCT
GGGACATGGCATCGGCACGGAGACGAGA
Found at i:36991165 original size:99 final size:92
Alignment explanation
Indices: 36990951--36991218 Score: 247
Period size: 96 Copynumber: 2.8 Consensus size: 92
36990941 TATGAGAGCT
** * ** *
36990951 AGTGTAAGACCATGTCTGGGACATGGCATTGGTATTGA-GACGAGAGCTAGTGTAAGA-CATGTC
1 AGTGTAAGACCATGTCTAAGACATGGCATCGACA-TGATG--GAGAGCCAGTGTAAGACCATGTC
* *
36991014 TGGGACAT-GCATCGGCCTCGAGATGTAAT
63 TGGGACATGGCATCAGCCTCGAGATGTAAC
**
36991043 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAT-ATGTGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTAAGACATGGCATC-G-AC--ATGATG-GAGAGCCAGTGTAAGACCATG
* ** *
36991107 TCTGGGACATGGCGTCAGCCTCGATTTCGATAGCC
61 TCTGGGACATGGCATCAGCCTCGAGAT-G-TA-AC
* *
36991142 AGTGTAAGACCATGTCTAAGACATGGCATCGACTTGATGGATGAGCCAGTATAAGACCATGTCTG
1 AGTGTAAGACCATGTCTAAGACATGGCATCGACATGATGGA-GAGCCAGTGTAAGACCATGTCTG
*
36991207 AGACATGGCATC
65 GGACATGGCATC
36991219 GGCATTATAC
Statistics
Matches: 147, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
92 29 0.20
93 1 0.01
94 16 0.11
95 19 0.13
96 48 0.33
97 3 0.02
98 3 0.02
99 28 0.19
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACCATGTCTAAGACATGGCATCGACATGATGGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCCTCGAGATGTAAC
Found at i:36996199 original size:96 final size:95
Alignment explanation
Indices: 36996081--36996278 Score: 301
Period size: 96 Copynumber: 2.1 Consensus size: 95
36996071 CTCACTTTCT
*
36996081 TCTCTAGTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACA
1 TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACT-CACCAATAACA
* * * * *
36996146 TTTCACAAAAGGTGATATCTCAATTGTATTC
65 GTGCACAAAAGATGATAGCTCAATCGTATTC
* *
36996177 TCTCTATTTGGATATTTAATTGGACATTGGAAGCCCTTATGATCTTTTGAACTCACCAATAACAG
1 TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTCACCAATAACAG
36996242 TGCACAAAAGATGATAGCTCAATCGTATTC
66 TGCACAAAAGATGATAGCTCAATCGTATTC
36996272 -CTC-ATTT
1 TCTCTATTT
36996279 CATTTGGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
93 4 0.04
94 3 0.03
95 37 0.39
96 50 0.53
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (95 bp):
TCTCTATTTAGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTCACCAATAACAG
TGCACAAAAGATGATAGCTCAATCGTATTC
Found at i:37003195 original size:37 final size:37
Alignment explanation
Indices: 37003145--37003272 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
37003135 TTATTACGAA
37003145 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
37003182 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
37003219 GTCTTACCCGGACATAATCTCCACACGTAGTCATCAG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
37003256 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
37003273 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
37 83 0.94
38 5 0.06
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:37003374 original size:48 final size:48
Alignment explanation
Indices: 37003312--37003511 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
37003302 TGTTACAACA
*
37003312 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37003360 TTCACATTATCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
37003408 TTCACATTAGCCCTTCGGCTTTACCACATATACGTATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37003456 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37003504 TTCACATT
1 TTCACATT
37003512 CATCACATCG
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37003526 original size:57 final size:57
Alignment explanation
Indices: 37003465--37003912 Score: 260
Period size: 49 Copynumber: 8.4 Consensus size: 57
37003455 TTTCACATTA
* * *
37003465 GCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
* * * * **
37003522 GCCATTAGGCCTTATCACATATATAGGCT-TTACCACATATACATATCACACATATGTTTCACAT
1 GCCATTAGGCCTTATCACATATACA---TATCA-CACATAT--GT-T-TCACAT-T-CATCACAT
**
37003586 TA
56 CG
* * *
37003588 GCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
*
37003645 GCCATTAGGCCTTATCACATAT--ATAT-ACAC-----CTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
*** * * *
37003694 GCCATTAGGCCTTATCACATAT--ATACTCTTTCACA---TT--CA-TCA-CA-TTG-
1 GCCATTAGGCCTTATCACATATACATA-TCACACATATGTTTCACATTCATCACATCG
* *
37003741 GCCATTAGGCCTTATCACATGT--ATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
*
37003790 GCCATTAGGCCTTATCACATAT--ATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
* *
37003839 GCCATTAGGCCTTATCACATATATATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
*
37003890 GCCATTAGGCCGTATCACATATA
1 GCCATTAGGCCTTATCACATATA
37003913 TACATCTCAT
Statistics
Matches: 327, Mismatches: 39, Indels: 56
0.77 0.09 0.13
Matches are distributed among these distances:
43 2 0.01
45 3 0.01
46 4 0.01
47 26 0.08
48 2 0.01
49 115 0.35
50 4 0.01
51 52 0.16
53 2 0.01
54 4 0.01
55 4 0.01
57 46 0.14
58 1 0.00
59 7 0.02
60 9 0.03
61 1 0.00
62 1 0.00
63 9 0.03
64 7 0.02
65 1 0.00
66 27 0.08
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.33
Consensus pattern (57 bp):
GCCATTAGGCCTTATCACATATACATATCACACATATGTTTCACATTCATCACATCG
Found at i:37003558 original size:18 final size:18
Alignment explanation
Indices: 37003527--37003562 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37003517 CATCGGCCAT
*
37003527 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
37003545 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
37003563 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:37003569 original size:123 final size:123
Alignment explanation
Indices: 37003424--37003669 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
37003414 TTAGCCCTTC
*
37003424 GGCTTTACCACATATACGTATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
37003489 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
37003547 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
37003612 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
37003670 TACACCTTCA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:37003682 original size:49 final size:49
Alignment explanation
Indices: 37003626--37003914 Score: 492
Period size: 49 Copynumber: 5.9 Consensus size: 49
37003616 CACACATATG
*
37003626 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
37003675 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37003722 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
37003771 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
37003820 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
37003871 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
37003915 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
47 44 0.19
49 136 0.60
51 48 0.21
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:37003728 original size:219 final size:216
Alignment explanation
Indices: 37003328--37003765 Score: 512
Period size: 219 Copynumber: 2.0 Consensus size: 216
37003318 TTAGCCATTC
*
37003328 GGCTTTACCACACATACATATCACACATATATTTCACATTATCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
* * * * *
37003393 ATATCACACATATATTTCACATTAGCCCTTCGGCTTTACCACATATACGTATCACACATATATTT
66 ATATCACACATATATTTCACATTAGCACATCGGCATTACCACATATACG-ATCACACATACACTT
* *
37003458 CACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCATCACATCGG
130 CACATTAGCCATTCGGCATTACCACATATACATATCACAC--ATCTTTCACATTCATCACATCGG
37003523 CCATTAGGCCTTATCACATATATA
193 CCATTAGGCCTTATCACATATATA
* *
37003547 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
* * * * * *
37003612 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGC-CTTATCAC-AT-ATATATACA
66 ATATCACACATATATTTCACATT-AGCACATCGG-CATTA-CCACATAT-ACGATCACACATACA
* * * *
37003674 CCTTCACATTCATCACA-TCGGCCATTAGGC-CTTATCACATAT-ATAC-TCTTTCACATTCATC
127 -CTTCACATT-AGC-CATTCGG-CATTA-CCACATAT-ACATATCACACATCTTTCACATTCATC
* *
37003735 ACATTGGCCATTAGGCCTTATCACATGTATA
186 ACATCGGCCATTAGGCCTTATCACATATATA
37003766 TACACTTTCA
Statistics
Matches: 187, Mismatches: 22, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
219 133 0.71
220 17 0.09
221 14 0.07
222 16 0.09
223 7 0.04
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (216 bp):
GGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATATTTCACATTAGCACATCGGCATTACCACATATACGATCACACATACACTTC
ACATTAGCCATTCGGCATTACCACATATACATATCACACATCTTTCACATTCATCACATCGGCCA
TTAGGCCTTATCACATATATA
Found at i:37003733 original size:96 final size:96
Alignment explanation
Indices: 37003626--37003916 Score: 492
Period size: 96 Copynumber: 3.0 Consensus size: 96
37003616 CACACATATG
* *
37003626 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
37003691 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACAC
*
37003722 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
37003787 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACAC
37003820 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
37003885 CATTGGCCATTAGGCCGTATCACATATATACA
64 CATTGGCCATTAGGCCTTATCACATATATACA
37003917 TCTCATACAT
Statistics
Matches: 184, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 82 0.45
98 55 0.30
100 47 0.26
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACAC
Found at i:37003775 original size:145 final size:146
Alignment explanation
Indices: 37003626--37003914 Score: 490
Period size: 145 Copynumber: 2.0 Consensus size: 146
37003616 CACACATATG
37003626 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
37003691 TCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
*
37003755 TCACATGTATATACAC
131 TCACATATATATACAC
* *
37003771 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
37003836 TTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
66 TCGGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
37003901 GTATCACATATATA
128 GTATCACATATATA
37003915 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
145 83 0.62
149 51 0.38
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
TCACATATATATACAC
Found at i:37007856 original size:79 final size:80
Alignment explanation
Indices: 37007688--37007857 Score: 238
Period size: 79 Copynumber: 2.1 Consensus size: 80
37007678 CACCAGCATG
* *
37007688 ATTGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCGGAT
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGAT
* * *
37007753 ACATCACTAGCACGA
66 AAACCACAAGCACGA
* * *
37007768 A-TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAATTTAGCCGGAT
1 ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGAT
37007832 ATAACCACAAGCAC-A
66 A-AACCACAAGCACGA
37007847 ATTGC-CTTCGG
1 ATTGCTCTTCGG
37007858 GTCTTAACCC
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
79 67 0.84
80 13 0.16
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
ATTGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGAT
AAACCACAAGCACGA
Found at i:37007857 original size:39 final size:39
Alignment explanation
Indices: 37007690--37007832 Score: 232
Period size: 40 Copynumber: 3.6 Consensus size: 39
37007680 CCAGCATGAT
* *
37007690 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAA
*
37007730 TGCTCTTCGGAACTTAGTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCGGATACATCACTAGCACGAA
37007769 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAG-CCGGATACATCACTAGCACGAA
*
37007809 TGCTCTTCGGAATTTAGCCGGATA
1 TGCTCTTCGGAACTTAGCCGGATA
37007833 TAACCACAAG
Statistics
Matches: 97, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 45 0.46
40 52 0.54
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TGCTCTTCGGAACTTAGCCGGATACATCACTAGCACGAA
Found at i:37007875 original size:40 final size:40
Alignment explanation
Indices: 37007761--37007949 Score: 134
Period size: 40 Copynumber: 4.7 Consensus size: 40
37007751 ATACATCACT
* ** * * * *
37007761 AGCACGAATGCTCTTCGGAACTTAGTCCGGATA-CATCACT
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* *
37007801 AGCACGAATGCTCTTCGGAAT-TTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGG-GTCTTAGCCCGGATATAACCACA
* * * * *
37007841 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
* ** *
37007882 A-CACAAATGCCTTCGGGTCTTAGCCCAGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* *
37007921 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
37007950 GTATCATTCA
Statistics
Matches: 121, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 1 0.01
39 17 0.14
40 101 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:37009903 original size:37 final size:37
Alignment explanation
Indices: 37009853--37009979 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
37009843 TTATTACGAA
37009853 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
37009890 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
37009927 GTCTTACCCGGACATAATCTCCACACGTAGTCATC-G
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
37009963 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
37009980 TTTCCAAGTT
Statistics
Matches: 88, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
36 11 0.12
37 77 0.88
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:37010078 original size:48 final size:48
Alignment explanation
Indices: 37010019--37010217 Score: 364
Period size: 48 Copynumber: 4.2 Consensus size: 48
37010009 TGTTACAACA
*
37010019 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37010067 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACAT-TAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37010114 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37010162 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37010210 TTCACATT
1 TTCACATT
37010218 CATCACATCG
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 46 0.32
48 100 0.68
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37010123 original size:95 final size:96
Alignment explanation
Indices: 37010019--37010217 Score: 364
Period size: 95 Copynumber: 2.1 Consensus size: 96
37010009 TGTTACAACA
37010019 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
37010084 GCTTTACCACATATACATATCACACAT-TAT
66 GCTTTACCACATATACATATCACACATATAT
* *
37010114 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
*
37010179 GCTTTACCACATATACATATCACACATATGT
66 GCTTTACCACATATACATATCACACATATAT
37010210 TTCACATT
1 TTCACATT
37010218 CATCACATCG
Statistics
Matches: 100, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
95 90 0.90
96 10 0.10
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATAT
Found at i:37010224 original size:57 final size:57
Alignment explanation
Indices: 37010163--37010419 Score: 217
Period size: 57 Copynumber: 4.5 Consensus size: 57
37010153 CACATATATT
* * *
37010163 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * * * * * **
37010220 TCACATCGGCCATTAGGCCTTATCACATATATACT-TTACACATATACATATCACACATATGTT
1 TCACATCAGCCATTAGGCCTTACCACATATACA-TATCACACATAT--GT-T-TCACAT-T-CA
* * *
37010283 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * *
37010340 TCACATCGGCCATTAGGCCTTATCACATAT--ATAT-ACAC-----CTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* *
37010389 TCACATCGGCCATTAGGCCTTATCACATATA
1 TCACATCAGCCATTAGGCCTTACCACATATA
37010420 TACTCTTTCA
Statistics
Matches: 163, Mismatches: 28, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
49 40 0.25
54 4 0.02
55 4 0.02
57 61 0.37
58 2 0.01
59 6 0.04
60 2 0.01
61 6 0.04
62 2 0.01
63 36 0.22
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (57 bp):
TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
Found at i:37010268 original size:120 final size:121
Alignment explanation
Indices: 37010132--37010372 Score: 466
Period size: 120 Copynumber: 2.0 Consensus size: 121
37010122 AGCCCTTCGG
37010132 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
37010197 ATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
37010253 CTTTA-CACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
37010317 ATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
37010373 TACACCTTCA
Statistics
Matches: 119, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
120 114 0.96
121 5 0.04
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.33
Consensus pattern (121 bp):
CTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
ATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:37010269 original size:63 final size:57
Alignment explanation
Indices: 37010171--37010617 Score: 303
Period size: 49 Copynumber: 8.4 Consensus size: 57
37010161 TTTCACATTA
* * * *
37010171 GCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
* * * ** **
37010228 GCCATTAGGCCTTATCACATATATACT-TTACACATATACATATCACACATATGTTTCACATTA
1 GCCATTAGGCCTTATCACATATATA-TATCACACATAT--GT-T-TCACAT-T-CATCACATCG
* * * *
37010291 GCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
37010348 GCCATTAGGCCTTATCACATATATATA-CAC-C------TTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
* ** * *
37010397 GCCATTAGGCCTTATCACATATATACTCTTTCAC--A---TT--CA-TCA-CA-TTG-
1 GCCATTAGGCCTTATCACATATATA-TATCACACATATGTTTCACATTCATCACATCG
* *
37010444 GCCATTAGGCCTTATCAC--ATGTATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
*
37010493 GCCATTAGGCCTTATCAC--ATATATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
*
37010542 GCCATTAGGCCTTATCACATATATATAT-ACAC-----TTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
*
37010593 GCCATTAGGCCGTATCACATATATA
1 GCCATTAGGCCTTATCACATATATA
37010618 CATCTCATAC
Statistics
Matches: 331, Mismatches: 38, Indels: 48
0.79 0.09 0.12
Matches are distributed among these distances:
43 5 0.02
44 2 0.01
45 6 0.02
46 3 0.01
47 20 0.06
48 2 0.01
49 111 0.34
50 4 0.01
51 58 0.18
52 1 0.00
53 2 0.01
55 1 0.00
56 3 0.01
57 59 0.18
58 2 0.01
59 6 0.02
60 2 0.01
61 6 0.02
62 2 0.01
63 36 0.11
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (57 bp):
GCCATTAGGCCTTATCACATATATATATCACACATATGTTTCACATTCATCACATCG
Found at i:37010301 original size:168 final size:168
Alignment explanation
Indices: 37010085--37010432 Score: 481
Period size: 168 Copynumber: 2.1 Consensus size: 168
37010075 AGCCATTCGG
*
37010085 CTTTACCACATATACATATCACACATTATTTCACATTAGCCCTTCGGCTTTACCACATATACATA
1 CTTTA-CACATATACATATCACACATTATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * **
37010150 TCACACATATATTTCACATT-AGC-CATTCGG-CTTTA-CCACATAT-ACATATCACACATATGT
65 TCACACATATATTTCACATTCAGCACA-TCGGCCATTAGCC-CATATCACATAT-ACACACA-CC
37010210 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
126 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
37010253 CTTTACACATATACATATCACACATATGTTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 CTTTACACATATACATATCACACAT-TATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * * * * *
37010318 TCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCA
65 TCACACATATATTTCACATTCAGCACATCGGCCATTAGCCCATATCACATATACACACACCTTCA
37010383 CATTCATCACATCGGCCATTAGGCCTTATCACATATATA
130 CATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
37010422 CTCTTTCACAT
1 CT-TTACACAT
37010433 TCATCACATT
Statistics
Matches: 160, Mismatches: 13, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
167 20 0.12
168 61 0.38
169 51 0.32
170 21 0.13
171 7 0.04
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (168 bp):
CTTTACACATATACATATCACACATTATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
CACACATATATTTCACATTCAGCACATCGGCCATTAGCCCATATCACATATACACACACCTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:37010385 original size:49 final size:49
Alignment explanation
Indices: 37010329--37010617 Score: 492
Period size: 49 Copynumber: 5.9 Consensus size: 49
37010319 CACACATATG
*
37010329 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
37010378 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37010425 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
37010474 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
37010523 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
37010574 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
37010618 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
47 44 0.19
49 136 0.60
51 48 0.21
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:37010436 original size:96 final size:96
Alignment explanation
Indices: 37010329--37010619 Score: 492
Period size: 96 Copynumber: 3.0 Consensus size: 96
37010319 CACACATATG
* *
37010329 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
37010394 TCGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACAC
*
37010425 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
37010490 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACAC
37010523 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
37010588 CATTGGCCATTAGGCCGTATCACATATATACA
64 CATTGGCCATTAGGCCTTATCACATATATACA
37010620 TCTCATACAT
Statistics
Matches: 184, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
96 82 0.45
98 55 0.30
100 47 0.26
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACAC
Found at i:37010496 original size:145 final size:146
Alignment explanation
Indices: 37010329--37010617 Score: 490
Period size: 145 Copynumber: 2.0 Consensus size: 146
37010319 CACACATATG
37010329 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
37010394 TCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
*
37010458 TCACATGTATATACAC
131 TCACATATATATACAC
* *
37010474 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
37010539 TTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
66 TCGGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
37010604 GTATCACATATATA
128 GTATCACATATATA
37010618 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
145 83 0.62
149 51 0.38
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
TCACATATATATACAC
Found at i:37015712 original size:39 final size:39
Alignment explanation
Indices: 37015564--37015745 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
37015554 TCGTTCAAAC
* * ** * **
37015564 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
37015604 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
37015644 GCCTTCGGGCTTAG-CCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
37015682 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
37015721 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
37015746 CTCGAACATT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 34 0.27
39 52 0.42
40 38 0.31
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:37023081 original size:39 final size:39
Alignment explanation
Indices: 37022963--37023145 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
37022953 TCGTTCAAAC
* * ** * **
37022963 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
37023003 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
37023043 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
*
37023082 GCCTTCGGGCTTAGCCCGGATATCATAACTCACACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
37023121 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
37023146 CTCGAACATT
Statistics
Matches: 125, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 87 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:37024964 original size:44 final size:45
Alignment explanation
Indices: 37024916--37025005 Score: 155
Period size: 44 Copynumber: 2.0 Consensus size: 45
37024906 TCATTTCATT
*
37024916 CAATTTAATCCATATACACATATTTAGGGCACTTTACA-TTTAGC
1 CAATTTAATCCATATACACATATTTAGGACACTTTACATTTTAGC
*
37024960 CAATTTAATCCATATACACATATTTAGGACAGTTTACATTTTAGC
1 CAATTTAATCCATATACACATATTTAGGACACTTTACATTTTAGC
37025005 C
1 C
37025006 CTTGTATTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
44 36 0.84
45 7 0.16
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (45 bp):
CAATTTAATCCATATACACATATTTAGGACACTTTACATTTTAGC
Found at i:37034033 original size:25 final size:24
Alignment explanation
Indices: 37034005--37034084 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 24
37033995 TTACAAAGGG
37034005 AAAGTCCTAATCTAAATCCTAATTT
1 AAAGTCCTAATC-AAATCCTAATTT
* *
37034030 AAAGTACTAAT-AGAATTCTTAATTT
1 AAAGTCCTAATCA-AA-TCCTAATTT
37034055 AAAGTCCTAA-CAGAATTCCTAATTT
1 AAAGTCCTAATCA-AA-TCCTAATTT
37034080 AAAGT
1 AAAGT
37034085 TTATAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
23 1 0.02
24 2 0.04
25 45 0.94
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.35
Consensus pattern (24 bp):
AAAGTCCTAATCAAATCCTAATTT
Found at i:37038692 original size:12 final size:13
Alignment explanation
Indices: 37038674--37038706 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
37038664 CAAAGGGAAA
37038674 GTCCTAATCTAAT
1 GTCCTAATCTAAT
*
37038687 -TCCTAATTTAAT
1 GTCCTAATCTAAT
37038699 GTCCTAAT
1 GTCCTAAT
37038707 AAAATTCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.42
Consensus pattern (13 bp):
GTCCTAATCTAAT
Found at i:37038702 original size:25 final size:25
Alignment explanation
Indices: 37038671--37038749 Score: 104
Period size: 25 Copynumber: 3.2 Consensus size: 25
37038661 TTACAAAGGG
**
37038671 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
* *
37038696 AATGTCCTAATAAAATTCTTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
* *
37038721 AAAGTTCTAATAGAATTCCTAATTT
1 AAAGTCCTAATAAAATTCCTAATTT
37038746 AAAG
1 AAAG
37038750 ATTATAAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 46 1.00
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (25 bp):
AAAGTCCTAATAAAATTCCTAATTT
Found at i:37040767 original size:30 final size:30
Alignment explanation
Indices: 37040727--37040787 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
37040717 AGTAAGTTAT
*
37040727 GATACCTTTTCAGGCTAGTTTCAGATAATC
1 GATACATTTTCAGGCTAGTTTCAGATAATC
*
37040757 GATACATTTTCAGTCTAGTTTCAGATAATC
1 GATACATTTTCAGGCTAGTTTCAGATAATC
37040787 G
1 G
37040788 CAGCACTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (30 bp):
GATACATTTTCAGGCTAGTTTCAGATAATC
Found at i:37055854 original size:31 final size:31
Alignment explanation
Indices: 37055816--37055875 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
37055806 CCACAACATA
37055816 GAGAACGAGCAATTAAATTACATGGGTAATG
1 GAGAACGAGCAATTAAATTACATGGGTAATG
*
37055847 GAGAACGAGCAATTAAATTACATTGGTAA
1 GAGAACGAGCAATTAAATTACATGGGTAA
37055876 CAATCCTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (31 bp):
GAGAACGAGCAATTAAATTACATGGGTAATG
Found at i:37065715 original size:43 final size:43
Alignment explanation
Indices: 37065668--37065765 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
37065658 TAGCCCAGCT
37065668 ATGGTCTTACACGAAATCAAATAACGATACCAATGTC-CTAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTC-AGAC
* * * *
37065711 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCTCAGAC
1 ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTCAGAC
37065754 ATGGTCTTACAC
1 ATGGTCTTACAC
37065766 ATAAACACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 49 0.98
44 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATAACGATACCAATGTCTCAGAC
Found at i:37067056 original size:288 final size:286
Alignment explanation
Indices: 37066690--37067269 Score: 1106
Period size: 288 Copynumber: 2.0 Consensus size: 286
37066680 ATTTAAATCA
*
37066690 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATTACATCATAAGGACTTTT
1 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATAACATCATAAGGACTTTT
37066755 CATGTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
66 CATGTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
37066820 TATAGTCCTTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATAT
131 TATAGTCC-TTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATAT
37066885 ATATAGTCACATGTTATAAACACCAAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTT
195 ATATAGTCACATGTTATAAACACC-AAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTT
*
37066950 GGTTCCGAAACCACTGTTCTGATTTAGC
259 GGTTCCCAAACCACTGTTCTGATTTAGC
37066978 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATAACATCATAAGGACTTTT
1 TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATAACATCATAAGGACTTTT
*
37067043 CATTTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
66 CATGTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
37067108 TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
131 TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
37067173 TATAGTCACATGTTATAAACACCAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTGG
196 TATAGTCACATGTTATAAACACCAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTGG
37067238 TTCCCAAACCACTGTTCTGATTTAGC
261 TTCCCAAACCACTGTTCTGATTTAGC
*
37067264 TAAAAT
1 TTAAAT
37067270 CGGGCTGTTA
Statistics
Matches: 288, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
286 72 0.25
287 80 0.28
288 136 0.47
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (286 bp):
TTAAATATAAGGCCATCTTTGTCAAATTCCACTGTCAATGGTCTAATAACATCATAAGGACTTTT
CATGTAATAAGTCATAGCAATTATGCACTTAAAAAAATAAAATTTAACTTTTGCATTTGACGCGA
TATAGTCCTTTTTATCAAATTAAGCATCCAAACGCTAAAATTATTTCACGAAAATTTCACATATA
TATAGTCACATGTTATAAACACCAAAAAATAATATTAAAATAATTTTCCCACCTCAAATTTTTGG
TTCCCAAACCACTGTTCTGATTTAGC
Found at i:37071928 original size:49 final size:49
Alignment explanation
Indices: 37071861--37072259 Score: 648
Period size: 49 Copynumber: 8.3 Consensus size: 49
37071851 TACATGATAG
37071861 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
37071910 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
37071959 TATATGTGATAAGGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
37072008 TATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
37072057 TATATGTGATAAGGCCTAATGGCCGATGTCATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
37072106 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
37072153 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * * *
37072200 TATATGTGATAGGGCCGAGTGGGCAACGTGATGGATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
37072249 -A-ATGTGATAAG
1 TATATGTGATAAG
37072260 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 14, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 96 0.29
48 1 0.00
49 237 0.71
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:37081906 original size:18 final size:18
Alignment explanation
Indices: 37081883--37082165 Score: 115
Period size: 18 Copynumber: 15.3 Consensus size: 18
37081873 GAATAATTAT
37081883 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
37081901 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
** * **
37081919 TTATTCAAAAATAACCAG
1 TTATTCAGTAACAGTCAG
*
37081937 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* * *
37081963 TTATCCAGTAATAGTCAA
1 TTATTCAGTAACAGTCAG
*
37081981 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAGTCAG
* * *
37081998 ATATTCAGTAACTATTAAG
1 TTATTCAGTAAC-AGTCAG
* * *
37082017 TTATTCAGTAGCAATTA-
1 TTATTCAGTAACAGTCAG
** *
37082034 TTCATTCAGTGGCAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
37082053 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* *
37082071 TTATTCAGTAATATTCAG
1 TTATTCAGTAACAGTCAG
37082089 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * * *
37082107 ATATCCAGTAACAGTTAA
1 TTATTCAGTAACAGTCAG
* * *
37082125 TTATCCGGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
37082143 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
37082161 TTATT
1 TTATT
37082166 TTATACCTTT
Statistics
Matches: 197, Mismatches: 52, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
17 17 0.09
18 147 0.75
19 18 0.09
21 2 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:37081925 original size:36 final size:36
Alignment explanation
Indices: 37081883--37082165 Score: 160
Period size: 36 Copynumber: 7.6 Consensus size: 36
37081873 GAATAATTAT
* *
37081883 TTATTCAGTAACAGTCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
** * * * *
37081919 TTATTCAAAAATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * *
37081955 TTGATCGGTTATCCAGTAATAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* * * *
37081999 -TATTCAGTAACTATTAAGTTATTCAGTAGCAAT-TA
1 TTATTCAGTAAC-AATCAGTTATTCAGTAACAATCAA
** **
37082034 TTCATTCAGTGGCAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * *
37082071 TTATTCAGTAATATTCAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * * * * *
37082108 -TATCCAGTAACAGTTAATTATCCGGTAACAGTCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
*
37082143 TTATTCAGTAATAATCAGTTATT
1 TTATTCAGTAACAATCAGTTATT
37082166 TTATACCTTT
Statistics
Matches: 182, Mismatches: 49, Indels: 32
0.69 0.19 0.12
Matches are distributed among these distances:
35 9 0.05
36 128 0.70
37 18 0.10
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:37082340 original size:6 final size:6
Alignment explanation
Indices: 37082329--37082357 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
37082319 ACAAATCTGG
37082329 AACAGT AACAGT AACAGT AACAGT AACAG
1 AACAGT AACAGT AACAGT AACAGT AACAG
37082358 CATTCAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.17, T:0.14
Consensus pattern (6 bp):
AACAGT
Found at i:37082395 original size:45 final size:45
Alignment explanation
Indices: 37082339--37082494 Score: 186
Period size: 45 Copynumber: 3.3 Consensus size: 45
37082329 AACAGTAACA
*
37082339 GTAACAGTAACAGTAACAGCATTCAACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGCATTCGACACACAAAGTGCCGAATCG
* *
37082384 GTAACAATAACAGTAACAGTAACAATATTCGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAG---C---ATTCGACACACAAAGTGCCGAATCG
* * ** *
37082435 GTAACAGTAGCAGTAATAATATCCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGCATTCGACACACAAAGTGCCGAATCG
37082480 GTAACAGTAACAGTA
1 GTAACAGTAACAGTA
37082495 GCGGTAACAG
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
45 55 0.59
48 1 0.01
51 38 0.40
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.17
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAGCATTCGACACACAAAGTGCCGAATCG
Found at i:37082395 original size:51 final size:51
Alignment explanation
Indices: 37082333--37082506 Score: 225
Period size: 51 Copynumber: 3.5 Consensus size: 51
37082323 ATCTGGAACA
* *
37082333 GTAACAGTAACAGTAACAGTAACAGCATTCAACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
* * *
37082384 GTAACAATAACAGTAACAGTAACAATATTCGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
* *
37082435 GTAACAGTAGCAGT-A-A-T-A-A-TATCCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
* *
37082480 GTAACAGTAACAGTAGCGGTAACAGTA
1 GTAACAGTAACAGTAACAGTAACAGTA
37082507 ACTAGCACAT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
45 37 0.35
46 1 0.01
47 1 0.01
48 2 0.02
49 2 0.02
50 2 0.02
51 60 0.57
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (51 bp):
GTAACAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCG
Found at i:37082914 original size:5 final size:5
Alignment explanation
Indices: 37082903--37082939 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
37082893 AATTAATCAT
* *
37082903 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AA
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AA
37082940 ATTTACTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:37083319 original size:21 final size:21
Alignment explanation
Indices: 37083294--37083354 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
37083284 TTTAATTTCA
37083294 ATTCAATAA-CAATTCACATAT
1 ATTCAATAATCAATTCA-ATAT
37083315 ATTC-ATAAATCAATTCAATAT
1 ATTCAAT-AATCAATTCAATAT
* * *
37083336 AATCAATATTCAATCCAAT
1 ATTCAATAATCAATTCAAT
37083355 TCATATAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.06
21 23 0.68
22 9 0.26
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (21 bp):
ATTCAATAATCAATTCAATAT
Found at i:37084600 original size:2 final size:2
Alignment explanation
Indices: 37084593--37084628 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
37084583 TGTTTTACTT
*
37084593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37084629 ATAACAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:37095379 original size:40 final size:40
Alignment explanation
Indices: 37095230--37095381 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 40
37095220 TCGAATGATG
* * ** *
37095230 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAAA
*
37095270 TCCGGACTAAGATCAGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
*
37095310 TCCGGACTAAGATCCGAAGGCATTTGTGCGGGTTCCCAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
**
37095350 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAG
37095382 CTATTATAAC
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.91
41 8 0.08
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTCCCAAA
Found at i:37101385 original size:5 final size:5
Alignment explanation
Indices: 37101375--37101406 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
37101365 TGAAAGTATT
*
37101375 TAAAA TAAAA TAAAA TAAAA TAAAA CAAAA TA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TA
37101407 TTACATTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:37107568 original size:14 final size:15
Alignment explanation
Indices: 37107546--37107578 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
37107536 AGAGAGAATG
37107546 ATGAATGATG-AGGA
1 ATGAATGATGAAGGA
*
37107560 ATGATTGATGAAGGA
1 ATGAATGATGAAGGA
37107575 ATGA
1 ATGA
37107579 GAGGGTCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.24
Consensus pattern (15 bp):
ATGAATGATGAAGGA
Found at i:37109068 original size:27 final size:27
Alignment explanation
Indices: 37109017--37109175 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
37109007 GCGAGGCTGC
* *
37109017 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
37109044 CAGATATTGTGGCAGAGCCATCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
37109070 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
37109097 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
37109124 CAGATATATGTGGCAGAGCCATCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
37109151 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
37109176 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:37109110 original size:54 final size:54
Alignment explanation
Indices: 37109035--37109175 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
37109025 GTGACGAAGT
* *
37109035 CACCAGATACAGAT-ATTGTGGCAGAGCCATCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
37109089 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
37109143 CATCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
37109176 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:37113561 original size:26 final size:26
Alignment explanation
Indices: 37113530--37113637 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
37113520 TGAAATGCCC
*
37113530 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
37113556 ATCATGGAACAATTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
37113582 ATCATAGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
37113608 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
37113634 ATCA
1 ATCA
37113638 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:37117449 original size:27 final size:27
Alignment explanation
Indices: 37117430--37117667 Score: 280
Period size: 27 Copynumber: 8.8 Consensus size: 27
37117420 ATTACCAAAG
**
37117430 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
**
37117457 TACCCTTAATTTACA-AAGTTACCATTT
1 TACCCTCGATTTACAGAA-TTACCATTT
*
37117484 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
**
37117511 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
37117538 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * * *
37117565 TACCCTTGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
37117592 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
37117619 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
37117646 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
37117668 TAAAATACCC
Statistics
Matches: 185, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.01
27 181 0.98
28 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:37117520 original size:81 final size:81
Alignment explanation
Indices: 37117411--37117667 Score: 336
Period size: 81 Copynumber: 3.2 Consensus size: 81
37117401 AATGCCTTCA
* *** *
37117411 ATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACTGTTTTACCCTTAATTTACA-AAG
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAA-
*
37117475 TTACCATTTTACCCTCG
65 TTACCGTTTTACCCTCG
* * * * *
37117492 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTATAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
*
37117557 TACCGTTTTACCCTTG
66 TACCGTTTTACCCTCG
* * * * *
37117573 ATTTATAAAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTATCCTCAATTTACAGAAT
1 ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
37117638 TACCGTTTTACCCTCG
66 TACCGTTTTACCCTCG
*
37117654 ATTTACAAAATTAC
1 ATTTATAAAATTAC
37117668 TAAAATACCC
Statistics
Matches: 151, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 149 0.99
82 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (81 bp):
ATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTACAGAAT
TACCGTTTTACCCTCG
Found at i:37117676 original size:27 final size:27
Alignment explanation
Indices: 37117417--37117758 Score: 130
Period size: 27 Copynumber: 12.7 Consensus size: 27
37117407 TTCAATTTGT
*
37117417 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***** **
37117444 AGAATTACTGTTTTACCCTTAATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
37117471 AAAGTTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
37117498 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ** *** *
37117525 AGAATTATTATTTTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **** * *
37117552 AGAATTACCGTTTTACCCTTGATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
**** * *
37117579 AAAATTACCGTTTTACCCTCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTAC
* **** * *
37117606 AGAATTACCGTTTTATCCTCAATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ****
37117633 AGAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* * *
37117660 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
*
37117687 AAAATTACCAAAATACCCTCGA-TTAGT
1 AAAATTACCAAAATACCCTCGATTTA-C
* **
37117714 AAAATTACCAAAATACCCT-TAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTAC
*
37117741 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
37117759 CTGGTTTGTA
Statistics
Matches: 264, Mismatches: 48, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.02
27 258 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Done.