Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 147 of 318
Found at i:44980691 original size:40 final size:40
Alignment explanation
Indices: 44980646--44980774 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
44980636 CGGAATATAA
44980646 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
44980686 CCGGATAGAATGACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
44980725 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
44980765 CCGGATATAA
1 CCGGATATAA
44980775 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 32 0.44
40 40 0.56
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44980752 original size:39 final size:39
Alignment explanation
Indices: 44980662--44980771 Score: 127
Period size: 39 Copynumber: 2.8 Consensus size: 39
44980652 ATAACCACGT
*
44980662 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
44980702 GCACGAATGCCTTC-GGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
44980741 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
44980772 TAATTTCCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
37 1 0.02
38 4 0.07
39 29 0.48
40 27 0.44
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:44980795 original size:79 final size:79
Alignment explanation
Indices: 44980662--44980809 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 79
44980652 ATAACCACGT
* * *
44980662 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGTCTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGCTTAGCCC
44980727 GGATGTAGCCACTA
66 GGATGTAGCCACTA
* * ** ** *
44980741 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCATTAACGTCTTCGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAACGCCTTCGGGCTTAGCC
44980805 CGGAT
65 CGGAT
44980810 ATCATTCAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
78 1 0.02
79 57 0.98
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAACGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:44988723 original size:40 final size:40
Alignment explanation
Indices: 44988678--44988845 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
44988668 CGGAATATAA
44988678 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
44988718 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
44988758 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
44988798 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
44988838 CCGGATAT
1 CCGGATAT
44988846 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44988828 original size:80 final size:80
Alignment explanation
Indices: 44988694--44988843 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
44988684 ATAACCACGT
* *
44988694 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
44988759 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
44988774 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
44988837 CCCGGAT
64 CCCGGAT
44988844 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:44990448 original size:31 final size:32
Alignment explanation
Indices: 44990413--44990477 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
44990403 TCAAGACACG
44990413 AAATATTTACGCATAC-AATTCCACATACAAT
1 AAATATTTACGCATACAAATTCCACATACAAT
44990444 AAATATTTACGCATACAAATTCCACATACAAT
1 AAATATTTACGCATACAAATTCCACATACAAT
44990476 AA
1 AA
44990478 GCACAGAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.48, C:0.22, G:0.03, T:0.28
Consensus pattern (32 bp):
AAATATTTACGCATACAAATTCCACATACAAT
Found at i:44994962 original size:28 final size:27
Alignment explanation
Indices: 44994862--44994976 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
44994852 CAGCATGGCT
* * **
44994862 ACCAG-AACAGATATTGTGACAAAATC
1 ACCAGAAACAGATATTGTGGCATAGCC
* * *
44994888 ACCAGATACAAATATTGTGGCAGAGCC
1 ACCAGAAACAGATATTGTGGCATAGCC
44994915 ACCA-AAACAGATATTCGTGGCATAGCC
1 ACCAGAAACAGATATT-GTGGCATAGCC
44994942 ACCAGAAACAGATAATTGTGGCATAGCC
1 ACCAGAAACAGAT-ATTGTGGCATAGCC
44994970 ACCAGAA
1 ACCAGAA
44994977 TGCTTCCTCC
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
26 14 0.18
27 33 0.43
28 26 0.34
29 3 0.04
ACGTcount: A:0.41, C:0.23, G:0.19, T:0.17
Consensus pattern (27 bp):
ACCAGAAACAGATATTGTGGCATAGCC
Found at i:44995140 original size:27 final size:26
Alignment explanation
Indices: 44995081--44995142 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
44995071 AAATTAACCC
* *
44995081 TAAGGGTATAATGGTCATTTTGCACG
1 TAAGGGTATAATGGTAATTTTACACG
* * *
44995107 TAGGGGTATAATGGTAATTTTTATACT
1 TAAGGGTATAATGGTAA-TTTTACACG
44995134 TAAGGGTAT
1 TAAGGGTAT
44995143 TTTAGTAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (26 bp):
TAAGGGTATAATGGTAATTTTACACG
Found at i:45006000 original size:23 final size:23
Alignment explanation
Indices: 45005970--45006088 Score: 98
Period size: 24 Copynumber: 4.9 Consensus size: 23
45005960 ATACGTATTA
45005970 TATATTTTTTATAATTAT-TTACT
1 TATATTTTTTAT-ATTATATTACT
45005993 TATATTTTATTATATTATATTACT
1 TATATTTT-TTATATTATATTACT
* *
45006017 TCATATTTTTCTACTATCATATTA-A
1 T-ATATTTTT-TA-TATTATATTACT
* *
45006042 TATATATTTTAACATATATCATTACT
1 TATAT-TTTTTATAT-TAT-ATTACT
*
45006068 TATTATTTATTATATTATATT
1 TA-TATTTTTTATATTATATT
45006089 TTACCACATA
Statistics
Matches: 77, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
23 15 0.19
24 21 0.27
25 21 0.27
26 17 0.22
27 3 0.04
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.59
Consensus pattern (23 bp):
TATATTTTTTATATTATATTACT
Found at i:45006164 original size:16 final size:16
Alignment explanation
Indices: 45006145--45006219 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 16
45006135 TTTAACAATA
45006145 TATTATTTCATATTAT
1 TATTATTTCATATTAT
45006161 TATTA--TC-TATTAT
1 TATTATTTCATATTAT
* *
45006174 ATATTTTTTCATGTATAT
1 -TATTATTTCATAT-TAT
* *
45006192 CATTA-TTCACATTAT
1 TATTATTTCATATTAT
45006207 TA-T-TTTCATATTA
1 TATTATTTCATATTA
45006220 ATAAAATATT
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
13 6 0.13
14 15 0.33
15 4 0.09
16 12 0.27
17 5 0.11
18 3 0.07
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:45015649 original size:48 final size:48
Alignment explanation
Indices: 45015578--45016152 Score: 943
Period size: 48 Copynumber: 12.0 Consensus size: 48
45015568 GATAAATGAG
45015578 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
45015626 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
45015674 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
45015722 TATATGTGTGCTATGTATATGTGGTAAAGCCGAATGGCTAATATGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
45015770 TATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCCAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * *
45015818 TATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
45015866 TATATGTGTGCTATGTATATGTGGTAAAGCCGAATGGCTAATATGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
45015914 TATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCCAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * * * *
45015962 TATGTATGAGATATGTATATGTGGTAAAGCCGAATAGCTAATATGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
45016010 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* *
45016058 TATATATGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
* * * *
45016106 TATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
45016153 TGTTGTAACA
Statistics
Matches: 487, Mismatches: 40, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 487 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
TATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
Found at i:45016305 original size:37 final size:37
Alignment explanation
Indices: 45016197--45016305 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
45016187 GGAAATATAT
* *
45016197 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
*
45016234 TCCGGGTGAGACCCGATGACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
*
45016271 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
45016306 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
Found at i:45022270 original size:206 final size:206
Alignment explanation
Indices: 45021914--45022461 Score: 778
Period size: 206 Copynumber: 2.7 Consensus size: 206
45021904 TGGCTAAGCA
* *
45021914 AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAATAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
* *
45021979 TTTCACGTGCTTACGATAAAGCAAATCTAAGATGATTTGGCATCTATGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * * * * *
45022044 TCGATGTTTGGCGTCTCCATATTTGACGGAGAGCATATACATAGCAGATCTAGCCTTCAGATGTT
131 TCGAAGTTTGGCGTCTCCATATTGGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
45022109 TATACT-AAAGC
196 TAGACTGAAA-C
* * * *
45022120 ATATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGTTGACTTAG
1 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCTGATTTGG
* * * *
45022184 CTTTCATGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAAACAACAA
65 CTTTCACGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
* *
45022249 ATCGAAGTTTGGCGTCTCCATATTGGACGGAGGGCAGGCACATAGCAGATCTAACCTTCAGATGA
130 ATCGAAGTTTGGCGTCTCCATATTGGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGA
45022314 TTAGACTGAAAC
195 TTAGACTGAAAC
* * *
45022326 AGATCCAAGAT-AGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGG
1 AGATCCAAGATGA-TTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGG
* ** * * *
45022390 TTTTTGCGTGCTAACGCTGAAGCAAATCTAAGATGATTTGGCAACTCTGTATTGTCAGAGAACAA
65 CTTTCACGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
45022455 ATCGAAG
130 ATCGAAG
45022462 AAGCAGATTT
Statistics
Matches: 300, Mismatches: 38, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
205 2 0.01
206 294 0.98
207 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTTTGGCGTCTCCATATTGGACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGAT
TAGACTGAAAC
Found at i:45025051 original size:24 final size:24
Alignment explanation
Indices: 45025024--45025144 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
45025014 GCTTATTATG
*
45025024 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45025048 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45025072 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45025096 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45025120 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45025144 A
1 A
45025145 CTTTCTACCC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:45032038 original size:24 final size:24
Alignment explanation
Indices: 45032011--45032131 Score: 233
Period size: 24 Copynumber: 5.0 Consensus size: 24
45032001 GCTTATTATG
*
45032011 ATCGCACACATAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45032035 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45032059 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45032083 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45032107 ATCGCACACACAGTGCCATAGTAA
1 ATCGCACACACAGTGCCATAGTAA
45032131 A
1 A
45032132 CTTTCTACCC
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 96 1.00
ACGTcount: A:0.38, C:0.28, G:0.17, T:0.17
Consensus pattern (24 bp):
ATCGCACACACAGTGCCATAGTAA
Found at i:45035540 original size:46 final size:44
Alignment explanation
Indices: 45035379--45035547 Score: 166
Period size: 47 Copynumber: 3.7 Consensus size: 44
45035369 CCCGCCCCTA
* * * *
45035379 AGTGAACT-GGACTCAACTCAATGAGCTCGGGCGTTCCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCATCCAT
*
45035422 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCCATCCAT
*
45035470 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-CATCCAT
*
45035515 AGGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
45035548 TGCTAACCAT
Statistics
Matches: 104, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 11 0.11
45 21 0.20
46 28 0.27
47 29 0.28
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCATCCAT
Found at i:45035545 original size:93 final size:91
Alignment explanation
Indices: 45035382--45035550 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 91
45035372 GCCCCTAAGT
* * * *
45035382 GAACTGGACTCAACTCAATGAGCTCGGGCGTTCCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCAGACTCAACTCAACG
45035447 AGTTCGGATGCCTAGTTACATCTCAC
66 AGTTCGGATGCCTAGTTACATCTCAC
* *
45035473 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCAGACTCAACTCAA
1 GAACT-GGACTCAACTCAACGAGCTCGGACATTC-CATCCATAAGTGAACTCAGACTCAACTCAA
45035538 CGAGTTCGGATGC
64 CGAGTTCGGATGC
45035551 TAACCATCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
91 5 0.07
92 24 0.34
93 41 0.59
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTGGACTCAACTCAACGAGCTCGGACATTCCATCCATAAGTGAACTCAGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:45036003 original size:30 final size:30
Alignment explanation
Indices: 45035969--45036028 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
45035959 ATTTAATACG
45035969 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
45035999 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
45036029 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:45043123 original size:46 final size:45
Alignment explanation
Indices: 45042960--45043126 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 45
45042950 CCCGCCCCTA
* * * *
45042960 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
* * * *
45043005 AAGTCAAATCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCATCCAT
*
45043053 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
45043098 AGGTGAACTCGGACTCAACTCAACGAGTT
1 A-GTGAACTCGGACTCAACTCAACGAGTT
45043127 TGGATGCTCA
Statistics
Matches: 97, Mismatches: 14, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 4 0.04
45 1 0.01
46 51 0.53
47 25 0.26
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT
Found at i:45044599 original size:24 final size:24
Alignment explanation
Indices: 45044556--45044672 Score: 95
Period size: 24 Copynumber: 4.9 Consensus size: 24
45044546 ACGTATTATA
45044556 TATATTTTA-TA-ATTAT-TTACT
1 TATATTTTATTATATTATATTACT
45044577 TATATTTTATTATATTATATTACT
1 TATATTTTATTATATTATATTACT
* *
45044601 TCATATTTT-TCTACTATCATATTA-A
1 T-ATATTTTAT-TA-TATTATATTACT
* *
45044626 TATATTTT-TAACATATATCATTACT
1 TATATTTTATTATAT-TAT-ATTACT
45044651 TAT-TATTTATTATATTATATTA
1 TATAT-TTTATTATATTATATTA
45044673 TATTTTACCA
Statistics
Matches: 77, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
21 9 0.12
22 4 0.05
23 8 0.10
24 24 0.31
25 19 0.25
26 13 0.17
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATTTTATTATATTATATTACT
Found at i:45044725 original size:47 final size:49
Alignment explanation
Indices: 45044650--45044768 Score: 131
Period size: 47 Copynumber: 2.5 Consensus size: 49
45044640 ATATCATTAC
* * *
45044650 TTATTAT-TTATTATATTATATTATATTTTACCACATA-A-TATTT-ATA
1 TTATTATATTATTATATTATTTTAGATTTTAACA-ATATATTATTTCATA
* *
45044696 TTTTTATATTATTATATTATTTTGGATTTTAACAATATATTATTTCATA
1 TTATTATATTATTATATTATTTTAGATTTTAACAATATATTATTTCATA
45044745 TTATTATTATCTATTATA-TATTTT
1 TTATTA-TAT-TATTATATTATTTT
45044769 TTCATGTATA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
46 9 0.15
47 23 0.38
48 5 0.08
49 8 0.13
50 9 0.15
51 7 0.11
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.60
Consensus pattern (49 bp):
TTATTATATTATTATATTATTTTAGATTTTAACAATATATTATTTCATA
Found at i:45044752 original size:16 final size:16
Alignment explanation
Indices: 45044733--45044807 Score: 54
Period size: 14 Copynumber: 4.9 Consensus size: 16
45044723 TTTAACAATA
45044733 TATTATTTCATATTAT
1 TATTATTTCATATTAT
45044749 TATTA--TC-TATTAT
1 TATTATTTCATATTAT
* *
45044762 ATATTTTTTCATGTATAT
1 -TATTATTTCATAT-TAT
* *
45044780 CATTA-TTCACATTAT
1 TATTATTTCATATTAT
45044795 TA-T-TTTCATATTA
1 TATTATTTCATATTA
45044808 ATAAAATATT
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
13 6 0.13
14 15 0.33
15 4 0.09
16 12 0.27
17 5 0.11
18 3 0.07
ACGTcount: A:0.31, C:0.09, G:0.01, T:0.59
Consensus pattern (16 bp):
TATTATTTCATATTAT
Found at i:45050903 original size:419 final size:420
Alignment explanation
Indices: 45050111--45050941 Score: 1123
Period size: 419 Copynumber: 2.0 Consensus size: 420
45050101 CGACCACGAC
* * * * * **
45050111 CCATACCATTTCCACCTTTGGCCTGACCACGGCCTCTCGGTGGCTGTTGATCACCCTTCGGCGGT
1 CCATACCATTTCCACCTCTGACCTGACCACGGCCTCTCGGTGGCTGATGACCACCCCTCGAAGGT
* * * * *
45050176 TGTACATTACCCTAACCTATAGCTTGCATCTAGTCGGGCCTCCGTAGACTATCTCTAATTTGGTA
66 TGTACATTACCCAAACCTATAGCTTCCATCTAGTCGGGCCTCCGTAGACAATCTCTAATTCGATA
*
45050241 CTCTAATGATCCACACCTCAAACATGCCCCAATCCATTTCAAGCACTCACCATGATGGCGTCTCC
131 CTCTAATGATCCACACCTCAAACATGCCCCAATCCATTTCAAGCACTCACCATGATGGCATCTCC
* * * * * *
45050306 CACAATCCGCACAGGGCTGTGGTCCAATAGCAGTAACAGGTGCCCCAACTTTGATTGGCCCATCA
196 CACAATCCACACAGGGCTGCGGTCCAATAGCAGCAACAGGTGCCCCAACTCTGACTGACCCATCA
* * *
45050371 ACTCTGGCCTTTTTCTTAAGCCTCATAAATGAACTTGAAGGTTCTGAGTCCCTTTTGTTCCTACC
261 ACTCTGGCCTTTTTCTTAAGCCTCATAAATGAACTTGAAGGCTCTGAATCCCTCTTGTTCCTACC
* * * *
45050436 TCTTTCTTTCTCATGATTCTGTCGTTCTGTATGTTTCACTTTTTCAGCAATCTTCACCTTATCCA
326 TCTTTCTTTCTCATGATTCTGTCATTCTATACGTTTCACTTCTTCAGCAATCTTCACCTTATCCA
45050501 CTAAAGCAGCAAAATCT-ACTCAGGCCTAA
391 CTAAAGCAGCAAAATCTCACTCAGGCCTAA
*
45050530 CCATACCATTTCCACCTCTGACCTGAGCACGGCCTCTCGGTGGCTGATGACCACCCCTCGAAGGT
1 CCATACCATTTCCACCTCTGACCTGACCACGGCCTCTCGGTGGCTGATGACCACCCCTCGAAGGT
* * * * * *
45050595 TGTACATTATCCAAACCTGTAGCTTCCATCT-GCTCGGGCGTCTGTGGACAATCTCTAGTTCGAT
66 TGTACATTACCCAAACCTATAGCTTCCATCTAG-TCGGGCCTCCGTAGACAATCTCTAATTCGAT
* * ** * ** *
45050659 GCTCTAATGATCCACATCTCAAACATGCCCCAATCTGTTTCCAGCACTTGCCGTGATGGCATCTC
130 ACTCTAATGATCCACACCTCAAACATGCCCCAATCCATTTCAAGCACTCACCATGATGGCATCTC
** * ** * *
45050724 CCACAATCCATGCAGGTCTGCGGTCCTGTAGTAGCAACAGG-GACCTCAACTCTGACTGACCCAT
195 CCACAATCCACACAGGGCTGCGGTCCAATAGCAGCAACAGGTG-CCCCAACTCTGACTGACCCAT
* * *
45050788 CAACTTTGGCCTTTTTCTTAGGCCTCATAAATGAACTTG-AGGCCTCTGAATCCCTCTTGTTTCT
259 CAACTCTGGCCTTTTTCTTAAGCCTCATAAATGAACTTGAAGG-CTCTGAATCCCTCTTGTTCCT
45050852 ACCTCTTTCTTTCTCATGATTCTGTCATTCTATACGCTTT-ACTTCTTCAGCAATCTTCACCTTA
323 ACCTCTTTCTTTCTCATGATTCTGTCATTCTATACG-TTTCACTTCTTCAGCAATCTTCACCTTA
*
45050916 TCCACTAAAGTAGCAAAATCTCACTC
387 TCCACTAAAGCAGCAAAATCTCACTC
45050942 TCTTTGCGGA
Statistics
Matches: 355, Mismatches: 52, Indels: 9
0.85 0.12 0.02
Matches are distributed among these distances:
418 5 0.01
419 343 0.97
420 7 0.02
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (420 bp):
CCATACCATTTCCACCTCTGACCTGACCACGGCCTCTCGGTGGCTGATGACCACCCCTCGAAGGT
TGTACATTACCCAAACCTATAGCTTCCATCTAGTCGGGCCTCCGTAGACAATCTCTAATTCGATA
CTCTAATGATCCACACCTCAAACATGCCCCAATCCATTTCAAGCACTCACCATGATGGCATCTCC
CACAATCCACACAGGGCTGCGGTCCAATAGCAGCAACAGGTGCCCCAACTCTGACTGACCCATCA
ACTCTGGCCTTTTTCTTAAGCCTCATAAATGAACTTGAAGGCTCTGAATCCCTCTTGTTCCTACC
TCTTTCTTTCTCATGATTCTGTCATTCTATACGTTTCACTTCTTCAGCAATCTTCACCTTATCCA
CTAAAGCAGCAAAATCTCACTCAGGCCTAA
Found at i:45052211 original size:49 final size:48
Alignment explanation
Indices: 45052113--45052281 Score: 232
Period size: 49 Copynumber: 3.5 Consensus size: 48
45052103 GCTTTATCAT
* *
45052113 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTA
*
45052162 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTTA
** * * *
45052211 ATAGTTGGGGAATAAGCCCTTTTAATAACTGGGGCATAAGCCATTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
45052259 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
45052282 GCACTTCCTC
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
48 51 0.48
49 55 0.52
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTA
Found at i:45052232 original size:73 final size:73
Alignment explanation
Indices: 45052133--45052281 Score: 255
Period size: 73 Copynumber: 2.0 Consensus size: 73
45052123 GCCTAGCCTC
*
45052133 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCA
1 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCATTTTGATAACTGGGGCA
45052198 TAAGCCCT
66 TAAGCCCT
**
45052206 TTTTAATAGTTGGGG-AATAAGCCCTTTTAATAACTGGGGCATAAGCCATTTTGATAACTGGGGC
1 TTTTAATAACTGGGGCAA-AAGCCCTTTTAATAACTGGGGCATAAGCCATTTTGATAACTGGGGC
45052270 ATAAGCCCT
65 ATAAGCCCT
45052279 TTT
1 TTT
45052282 GCACTTCCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
72 2 0.03
73 70 0.97
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (73 bp):
TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCATTTTGATAACTGGGGCA
TAAGCCCT
Found at i:45052282 original size:24 final size:24
Alignment explanation
Indices: 45052113--45052281 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
45052103 GCTTTATCAT
*
45052113 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
45052138 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
45052162 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
45052186 ATAACTGGGGCATAAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
** *
45052211 ATAGTTGGGGAATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
45052235 ATAACTGGGGCATAAGCCATTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
45052259 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
45052282 GCACTTCCTC
Statistics
Matches: 128, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
24 96 0.75
25 32 0.25
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:45062534 original size:24 final size:24
Alignment explanation
Indices: 45062502--45062588 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
45062492 AATCTCAAAT
45062502 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
45062526 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
45062550 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
45062574 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
45062589 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:45062554 original size:48 final size:48
Alignment explanation
Indices: 45062502--45062610 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
45062492 AATCTCAAAT
** *
45062502 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
45062550 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
45062598 GCACTATGTGTGC
1 GCACTATGTGTGC
45062611 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:45062601 original size:24 final size:24
Alignment explanation
Indices: 45062502--45062610 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
45062492 AATCTCAAAT
*
45062502 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
45062526 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
45062550 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
45062574 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
45062598 GCACTATGTGTGC
1 GCACTATGTGTGC
45062611 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:45064087 original size:49 final size:49
Alignment explanation
Indices: 45063996--45064108 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 49
45063986 ATCAAAGTCG
* * ** * *
45063996 ATGCCATGTCCTAGATAGGTCTTATTCTGAGTTTCATTTATCGAG-GTCA
1 ATGCCATGTCCCAGATAGGTCTAAAACTGAGTCTCATCTATCG-GTGTCA
*
45064045 ATGCCATGTCCCAGATAGGTCTAAAACTG-GCTCTCATCTATCGGTGTCG
1 ATGCCATGTCCCAGATAGGTCTAAAACTGAG-TCTCATCTATCGGTGTCA
45064094 ATGCCATGTCCCAGA
1 ATGCCATGTCCCAGA
45064109 CATGTCTTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.04
49 53 0.96
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (49 bp):
ATGCCATGTCCCAGATAGGTCTAAAACTGAGTCTCATCTATCGGTGTCA
Found at i:45065624 original size:2 final size:2
Alignment explanation
Indices: 45065617--45065646 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
45065607 TTACTCATCC
45065617 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45065647 GTATTTAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45066907 original size:36 final size:36
Alignment explanation
Indices: 45066860--45066931 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
45066850 TAATAATGAA
45066860 TTTCAAGATTCTTCAATATTATCGAGAGTTTTAAGG
1 TTTCAAGATTCTTCAATATTATCGAGAGTTTTAAGG
45066896 TTTCAAGATTCTTCAATATTATCGAGAGTTTTAAGG
1 TTTCAAGATTCTTCAATATTATCGAGAGTTTTAAGG
45066932 AAAAATTGAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.42
Consensus pattern (36 bp):
TTTCAAGATTCTTCAATATTATCGAGAGTTTTAAGG
Found at i:45070183 original size:17 final size:18
Alignment explanation
Indices: 45070141--45070189 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
45070131 AGTTGAAAAG
45070141 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
45070160 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
45070177 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
45070190 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:45071078 original size:40 final size:40
Alignment explanation
Indices: 45071012--45071178 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
45071002 AAATTGAATG
* * * *
45071012 ATATCCGGGCTAAG-TCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
45071051 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
45071091 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
45071131 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
45071171 ATATCCGG
1 ATATCCGG
45071179 TTATATTCCG
Statistics
Matches: 102, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
39 16 0.16
40 84 0.82
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:45078432 original size:28 final size:27
Alignment explanation
Indices: 45078369--45078438 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45078359 ATAGTGAGTC
45078369 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
45078396 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45078424 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45078439 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45081357 original size:42 final size:42
Alignment explanation
Indices: 45081298--45081380 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
45081288 GGCCCTTAGG
* ** *
45081298 CCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAA
1 CCCATTTCAATATCACATGAAATACCAATGAATGTATGCAAA
45081340 CCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 CCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
45081381 GCCTATTTAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (42 bp):
CCCATTTCAATATCACATGAAATACCAATGAATGTATGCAAA
Found at i:45081547 original size:24 final size:26
Alignment explanation
Indices: 45081520--45081578 Score: 88
Period size: 25 Copynumber: 2.3 Consensus size: 26
45081510 CTGGAGGCCT
45081520 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
45081544 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
45081570 AGCCCTTTT
1 AGCCCTTTT
45081579 GCACTTCCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.16
24 7 0.22
25 10 0.31
26 10 0.31
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:45081652 original size:20 final size:20
Alignment explanation
Indices: 45081627--45081703 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
45081617 TTATGAATAC
*
45081627 ATCATGTGGATTTCATACAT
1 ATCATGTGCATTTCATACAT
45081647 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
45081667 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
45081687 ATCATGTGCATATCATA
1 ATCATGTGCATTTCATA
45081704 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:45082437 original size:27 final size:26
Alignment explanation
Indices: 45082402--45082495 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
45082392 GGGCATATTC
*
45082402 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACC-TACAGGGGCT-TTACG
*
45082429 GTCACTTTAACCTACAGGGGCTTCACG
1 GTCACTTT-ACCTACAGGGGCTTTACG
45082456 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTA-CCTACAGGGGCTTTACG
**
45082483 GTCTTTTTACCTA
1 GTCACTTTACCTA
45082496 ATAGGGGTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.08
27 50 0.85
28 4 0.07
ACGTcount: A:0.21, C:0.26, G:0.20, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGCTTTACG
Found at i:45082577 original size:27 final size:27
Alignment explanation
Indices: 45082525--45082870 Score: 236
Period size: 27 Copynumber: 12.8 Consensus size: 27
45082515 TTCATCCTAC
* * *
45082525 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
** ** *
45082552 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAACT
* *** * *
45082579 AATGGTATTTCCATAATTTTTAGAAAGT
1 AAGGGTATTTTGGTAA-TTTTACAAACT
*
45082607 CAAGGGTATTTCT-GTAACTTTGTA-AATC-
1 -AAGGGTATTT-TGGTAA-TTT-TACAAACT
* *
45082635 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
45082662 GAGGGTATTTCGATAATTTCACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
45082688 CAGTGGTATTTTGGTAATTTTACAAATT
1 AAG-GGTATTTTGGTAATTTTACAAACT
* *
45082716 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAACT
* *
45082743 GAGGGTATTTCGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACT
* * * *
45082770 AGGGGTATTTTAGCAATTTTACAGACT
1 AAGGGTATTTTGGTAATTTTACAAACT
**
45082797 -AGGGTATTTTGGTAATTTTACTGA-T
1 AAGGGTATTTTGGTAATTTTACAAACT
* ** *
45082822 CGAGGGTATTTTGGTAATTTTGTAAACC
1 -AAGGGTATTTTGGTAATTTTACAAACT
* *
45082850 AAGGGTATTTTAGTAGTTTTA
1 AAGGGTATTTTGGTAATTTTA
45082871 TAAATCGAGG
Statistics
Matches: 247, Mismatches: 60, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
25 3 0.01
26 28 0.11
27 189 0.77
28 8 0.03
29 17 0.07
30 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAACT
Found at i:45082731 original size:81 final size:81
Alignment explanation
Indices: 45082630--45082862 Score: 306
Period size: 81 Copynumber: 2.9 Consensus size: 81
45082620 GTAACTTTGT
* * *
45082630 AAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGT
1 AAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGT
* *
45082695 ATTTTGGTAATTTTAC
66 ATTTTAGCAATTTTAC
* *
45082711 AAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTAGGGGT
1 AAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGT
45082776 ATTTTAGCAATTTTAC
66 ATTTTAGCAATTTTAC
* * ** * * *** *
45082792 AGACTA-GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGT
1 AAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGT
45082856 ATTTTAG
66 ATTTTAG
45082863 TAGTTTTATA
Statistics
Matches: 135, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 57 0.42
81 78 0.58
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
AAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGGT
ATTTTAGCAATTTTAC
Found at i:45082891 original size:27 final size:27
Alignment explanation
Indices: 45082869--45082991 Score: 174
Period size: 27 Copynumber: 4.6 Consensus size: 27
45082859 TTAGTAGTTT
45082869 TATAAATCGAGGGTAAAACAGTAATTC
1 TATAAATCGAGGGTAAAACAGTAATTC
* * * *
45082896 TGTAAATCAAGGGTAAAATAGTAATTT
1 TATAAATCGAGGGTAAAACAGTAATTC
* *
45082923 TGTAAATCGAGGGTAAAACGGTAATTC
1 TATAAATCGAGGGTAAAACAGTAATTC
**
45082950 TATAAATCGAGGGTAAAATGGTAATTC
1 TATAAATCGAGGGTAAAACAGTAATTC
45082977 TATAAATCGAGGGTA
1 TATAAATCGAGGGTA
45082992 CTTTGGTAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
TATAAATCGAGGGTAAAACAGTAATTC
Found at i:45082893 original size:54 final size:54
Alignment explanation
Indices: 45082835--45082991 Score: 197
Period size: 54 Copynumber: 2.9 Consensus size: 54
45082825 GGGTATTTTG
* *** *
45082835 GTAATTTTGTAAACCAAGGGTATTTTAGTAGTTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACA
* * *
45082889 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACA
* * * * *
45082943 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTA
45082992 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.32
Consensus pattern (54 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTATAAATCGAGGGTAAAACA
Found at i:45082998 original size:27 final size:27
Alignment explanation
Indices: 45082866--45083005 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 27
45082856 ATTTTAGTAG
**
45082866 TTTTATAAATCGAGGGTAAAACAGTAA
1 TTTTATAAATCGAGGGTAAAATGGTAA
* * * *
45082893 TTCTGTAAATCAAGGGTAAAATAGTAA
1 TTTTATAAATCGAGGGTAAAATGGTAA
* *
45082920 TTTTGTAAATCGAGGGTAAAACGGTAA
1 TTTTATAAATCGAGGGTAAAATGGTAA
*
45082947 TTCTATAAATCGAGGGTAAAATGGTAA
1 TTTTATAAATCGAGGGTAAAATGGTAA
* ***
45082974 TTCTATAAATCGAGGGTACTTTGGTAA
1 TTTTATAAATCGAGGGTAAAATGGTAA
45083001 TTTTA
1 TTTTA
45083006 CAATTTGAGG
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 98 1.00
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.33
Consensus pattern (27 bp):
TTTTATAAATCGAGGGTAAAATGGTAA
Found at i:45083001 original size:81 final size:81
Alignment explanation
Indices: 45082820--45083004 Score: 208
Period size: 81 Copynumber: 2.3 Consensus size: 81
45082810 AATTTTACTG
* **** * *
45082820 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAGTTTTATAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
*
45082885 AACAGTAATTCTGTAA
66 AACAGTAATTCTATAA
* ** * * * *
45082901 ATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
**
45082966 AATGGTAATTCTATAA
66 AACAGTAATTCTATAA
*
45082982 ATCGAGGGTACTTTGGTAATTTT
1 ATCGAGGGTAATTTGGTAATTTT
45083005 ACAATTTGAG
Statistics
Matches: 82, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.35
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTGTAAACCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAA
AACAGTAATTCTATAA
Found at i:45088192 original size:28 final size:27
Alignment explanation
Indices: 45088129--45088198 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45088119 ATAGTGAGTC
45088129 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
45088156 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45088184 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45088199 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45095397 original size:28 final size:27
Alignment explanation
Indices: 45095334--45095403 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45095324 ATAGTGAGTC
45095334 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
45095361 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45095389 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45095404 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45097000 original size:79 final size:80
Alignment explanation
Indices: 45096902--45097084 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
45096892 TAATCGTTCA
* * *
45096902 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCATAAATGCCTTCGGGA-CTTAAC-CCG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTT-ACTCCG
* * *
45096964 GATTTAGTAAC-TCGCACC
63 GATATAATAACTTAGCA-C
*
45096982 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTTGCACAAATGCCTTCGGATCTTACTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGGAT
*
45097046 ATAATCACTTAGCAC
66 ATAATAACTTAGCAC
*
45097061 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
45097085 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 5 0.06
79 56 0.63
80 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTACTCCGGAT
ATAATAACTTAGCAC
Found at i:45097084 original size:40 final size:40
Alignment explanation
Indices: 45096881--45097084 Score: 213
Period size: 40 Copynumber: 5.1 Consensus size: 40
45096871 CGGAATTTAA
** *
45096881 CCGGATATAGCTAA-TCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
45096921 CCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45096961 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
45097000 CCGGA-ATTAGTAACTTGCACAAATGCCTTC-GGATCTTA-C
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
45097039 TCCGGATATAATCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 -CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45097080 CCGGA
1 CCGGA
45097085 CATCATTCGA
Statistics
Matches: 138, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 35 0.25
40 88 0.64
41 13 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45104803 original size:77 final size:80
Alignment explanation
Indices: 45104637--45104819 Score: 216
Period size: 77 Copynumber: 2.3 Consensus size: 80
45104627 GCTACTCGTT
* *
45104637 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTC-CACAAATGCCTTCGGGACTTAACCCG
* *
45104701 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
45104718 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACT-CACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCCACAAATGCCTTCGGGA-CTTAACCCGG
*
45104779 ATATAGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
45104795 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
45104820 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
76 3 0.03
77 41 0.46
78 15 0.17
79 17 0.19
80 10 0.11
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:45104819 original size:40 final size:40
Alignment explanation
Indices: 45104618--45104819 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
45104608 CGGAATTTAA
** *
45104618 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45104658 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
45104698 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
45104737 CCGGA-ATTAGTAACT--CACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
45104775 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
45104815 CCGGA
1 CCGGA
45104820 CATCATTCGA
Statistics
Matches: 139, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
36 2 0.01
37 12 0.09
38 16 0.12
39 21 0.15
40 79 0.57
41 9 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45122522 original size:20 final size:20
Alignment explanation
Indices: 45122494--45122545 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
45122484 AAATAATTCA
*
45122494 ACACAAGCGTGTCCCTAAGC
1 ACACGAGCGTGTCCCTAAGC
* *
45122514 ACACGAGCGTCTCCCTAAGT
1 ACACGAGCGTGTCCCTAAGC
*
45122534 ACACGGGCGTGT
1 ACACGAGCGTGT
45122546 GCTTTGCCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (20 bp):
ACACGAGCGTGTCCCTAAGC
Found at i:45137638 original size:40 final size:40
Alignment explanation
Indices: 45137536--45137703 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
45137526 AAATTGAATG
* * * *
45137536 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GGAATTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAA-TT
* ***
45137576 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
* *
45137616 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAATT
* * *
45137656 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ATGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTAATT
45137696 ATATCCGG
1 ATATCCGG
45137704 TTATATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.04
40 100 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAATT
Found at i:45143259 original size:17 final size:17
Alignment explanation
Indices: 45143237--45143275 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
45143227 AGTCCATTTA
45143237 ATTTTCAATTTATTTTT
1 ATTTTCAATTTATTTTT
*
45143254 ATTTTCATTTTATTTTT
1 ATTTTCAATTTATTTTT
45143271 ATTTT
1 ATTTT
45143276 AGCATTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTTTCAATTTATTTTT
Found at i:45146246 original size:37 final size:37
Alignment explanation
Indices: 45146167--45146249 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
45146157 AACCTTTAGT
* * *
45146167 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
45146204 TCGGGTCTTACCCGGACATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
45146241 TCGGGTCTT
1 TCGGGTCTT
45146250 TAGAGCTCGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.20, C:0.33, G:0.23, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:45146436 original size:47 final size:47
Alignment explanation
Indices: 45146367--45146757 Score: 629
Period size: 47 Copynumber: 8.3 Consensus size: 47
45146357 CCCTTCGGGA
* * * * *
45146367 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45146414 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45146461 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45146508 CATGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
45146555 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45146602 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45146649 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45146696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45146743 CTTATCACATATATA
1 CTTATCACATATATA
45146758 TATCTCATAC
Statistics
Matches: 320, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 320 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45146445 original size:25 final size:25
Alignment explanation
Indices: 45146417--45146495 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
45146407 ACTCGGCCTT
*
45146417 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
45146442 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
45146464 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
45146489 ATCACAT
1 ATCACAT
45146496 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:45150416 original size:80 final size:80
Alignment explanation
Indices: 45150332--45150480 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
45150322 TATGGTAACC
* * * *
45150332 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
45150396 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
45150412 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
45150477 CCGG
66 CCGG
45150481 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:45150422 original size:40 final size:38
Alignment explanation
Indices: 45150373--45150480 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
45150363 ATCACGATTT
*
45150373 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
45150413 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
45150453 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
45150481 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:45158530 original size:80 final size:80
Alignment explanation
Indices: 45158446--45158594 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
45158436 TATGGTAACC
* * * *
45158446 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
45158510 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
45158526 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
45158591 CCGG
66 CCGG
45158595 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:45158536 original size:40 final size:38
Alignment explanation
Indices: 45158487--45158594 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
45158477 ATCACGATTT
*
45158487 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
45158527 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
45158567 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
45158595 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:45160433 original size:125 final size:125
Alignment explanation
Indices: 45160211--45160436 Score: 337
Period size: 125 Copynumber: 1.8 Consensus size: 125
45160201 ATGAGCACAC
* * ** * *
45160211 ACATATTATAGGCATCAAAATAAATTTTTAATTATTTTTATGCCTCGGTTTTGTGGTCCCGAGAC
1 ACATATAATAAGCATCAAAATAAATGGTTAATTATTTTTATGACTCGGTTTTGTGGTCCCGAAAC
*
45160276 CACCTTCCGACTAGGGTCAATTTTGGGCTGTCACAATGAAATTTTCACACATGCCTATAT
66 CACCTTCCGACTAGGGTCAATTTAGGGCTGTCACAATGAAATTTTCACACATGCCTATAT
*
45160336 ACATATAATAAGCATC-AAATATAATGGTTAATTATTTTTATGACTTGGTTTTGTGGTCCCGAAA
1 ACATATAATAAGCATCAAAATA-AATGGTTAATTATTTTTATGACTCGGTTTTGTGGTCCCGAAA
* * *
45160400 CCACTTTCCGACTAGGGTCACTTTAGGGGTGTCACAA
65 CCACCTTCCGACTAGGGTCAATTTAGGGCTGTCACAA
45160437 GCCCCATTAC
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
124 5 0.06
125 84 0.94
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (125 bp):
ACATATAATAAGCATCAAAATAAATGGTTAATTATTTTTATGACTCGGTTTTGTGGTCCCGAAAC
CACCTTCCGACTAGGGTCAATTTAGGGCTGTCACAATGAAATTTTCACACATGCCTATAT
Found at i:45165047 original size:18 final size:18
Alignment explanation
Indices: 45165026--45165076 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
45165016 GCAATAACAA
* *
45165026 TAATCAGTGTAGTAAAAG
1 TAATCAATGCAGTAAAAG
*
45165044 TAATCAATGCAGTAATAG
1 TAATCAATGCAGTAAAAG
45165062 TAATCAATGCAGTAA
1 TAATCAATGCAGTAA
45165077 CAGTTTAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.45, C:0.10, G:0.18, T:0.27
Consensus pattern (18 bp):
TAATCAATGCAGTAAAAG
Found at i:45169143 original size:47 final size:47
Alignment explanation
Indices: 45169082--45169247 Score: 135
Period size: 47 Copynumber: 3.5 Consensus size: 47
45169072 TACGAAAGCC
*
45169082 AGTGGAAGACCATGTCTAGGACATGGCATCAACATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTAGGACATGGCATCAACATTGAGACGAGTGCT
* * * * * *
45169130 AGTGTAGGACATGTTTGGGACAT-GCATCGGCCACATT-ATGA--A-AGCC
1 AGTGTAAGACATGTCTAGGACATGGCAT---CAACATTGA-GACGAGTGCT
* * * **
45169176 AGGGTAAGACTTTGTCTAGGACATGGCTTCGGCATTGAGACGAGTGCT
1 AGTGTAAGAC-ATGTCTAGGACATGGCATCAACATTGAGACGAGTGCT
45169224 AGTGTAAGACATGTCTAGGACATG
1 AGTGTAAGACATGTCTAGGACATG
45169248 CGTCAATTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
45 7 0.08
46 15 0.17
47 37 0.42
48 22 0.25
49 8 0.09
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGGCATCAACATTGAGACGAGTGCT
Found at i:45169194 original size:94 final size:94
Alignment explanation
Indices: 45169033--45169248 Score: 335
Period size: 94 Copynumber: 2.3 Consensus size: 94
45169023 ACTCGTGTGA
45169033 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAAAGCCAGTGGAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAAAGCCAGTGGAAGACCATGTC
45169098 TAGGACATGGCATCAACATTGAGACGAGT
66 TAGGACATGGCATCAACATTGAGACGAGT
* * * **
45169127 GCTAGTGTAGGACATGTTTGGGACATGCATCGGCCACATTATGAAAGCCAG-GGTAAGACTTTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAAAGCCAGTGG-AAGACCATGT
* **
45169191 CTAGGACATGGCTTCGGCATTGAGACGAGT
65 CTAGGACATGGCATCAACATTGAGACGAGT
*
45169221 GCTAGTGTAAGACATGTCTAGGACATGC
1 GCTAGTGTAAGACATGTCTGGGACATGC
45169249 GTCAATTATG
Statistics
Matches: 110, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
93 2 0.02
94 108 0.98
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAAAGCCAGTGGAAGACCATGTC
TAGGACATGGCATCAACATTGAGACGAGT
Found at i:45169286 original size:94 final size:94
Alignment explanation
Indices: 45169033--45169303 Score: 285
Period size: 94 Copynumber: 2.9 Consensus size: 94
45169023 ACTCGTGTGA
* ** * * *
45169033 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTACGAAAGCCAGTGGAAGACCATGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAACCACATCATGAAAGCCAGTGTAAGACCATGTC
45169098 TAGGACATGGCATCAACATTGAGACGAGT
66 TAGGACATGGCATCAACATTGAGACGAGT
* * * ** * * **
45169127 GCTAGTGTAGGACATGTTTGGGACATGCATCGGCCACATTATGAAAGCCAGGGTAAGACTTTGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAACCACATCATGAAAGCCAGTGTAAGACCATGTC
* **
45169192 TAGGACATGGCTTCGGCATTGAGACGAGT
66 TAGGACATGGCATCAACATTGAGACGAGT
* ** * * *
45169221 GCTAGTGTAAGACATGTCTAGGACATGCGTCAATTATGA-CATGACAGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAACCA-CATCATGAAAGCCAGTGTAAGACCATGT
*
45169285 CT-GAGAGATGGCATCAACA
65 CTAG-GACATGGCATCAACA
45169304 CCTTACCCTA
Statistics
Matches: 146, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
93 1 0.01
94 144 0.99
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAACCACATCATGAAAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCAACATTGAGACGAGT
Found at i:45169890 original size:18 final size:18
Alignment explanation
Indices: 45169867--45169903 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
45169857 ATGAGTAAAA
45169867 TGCACAAACGAAATGTTG
1 TGCACAAACGAAATGTTG
45169885 TGCACAAACGAAATGTTG
1 TGCACAAACGAAATGTTG
45169903 T
1 T
45169904 CTGTTGTGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (18 bp):
TGCACAAACGAAATGTTG
Found at i:45175812 original size:55 final size:55
Alignment explanation
Indices: 45175623--45175873 Score: 229
Period size: 55 Copynumber: 4.7 Consensus size: 55
45175613 GCACAGGTAC
* * ** *
45175623 CTTACCATTGCCATGACTTTTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * *
45175672 CTTACCATTGTCATGTCTCGACATGGTCTTACATGTTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
45175725 CTCACCAATGCCATG-CTTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* *
45175780 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
45175833 CCTTATCAATTGCCATGCCTTGGCATGGTCTTACATGGTAT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTAT
45175874 TCTTAAACCC
Statistics
Matches: 167, Mismatches: 22, Indels: 20
0.80 0.11 0.10
Matches are distributed among these distances:
49 34 0.20
50 1 0.01
52 3 0.02
53 48 0.29
54 12 0.07
55 66 0.40
56 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (55 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:45175814 original size:108 final size:110
Alignment explanation
Indices: 45175668--45175870 Score: 304
Period size: 108 Copynumber: 1.9 Consensus size: 110
45175658 GTATCCTTTT
* * *
45175668 GAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGTTATCCTTGCCTTATG-AA-CTCACC
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACC
*
45175731 AA-TGCCATGCTTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 AATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* * * *
45175776 GAAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTTATCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
45175841 ATTGCCATGCCTTGGCATGGTCTTACATGG
66 ATTGCCATGCCTTGGCATGGTCTTACATGG
45175871 TATTCTTAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 1 0.01
108 50 0.60
109 6 0.07
110 27 0.32
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (110 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCA
ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:45179838 original size:46 final size:46
Alignment explanation
Indices: 45179788--45179913 Score: 180
Period size: 46 Copynumber: 2.7 Consensus size: 46
45179778 TTGAGCATCT
* *
45179788 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
* * * *
45179834 GAACTCGTTGAGTTAAGTCCGAGTTCACTCATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
* *
45179880 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45179914 GCGGGTTACA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCC
Found at i:45182445 original size:46 final size:45
Alignment explanation
Indices: 45182340--45182513 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
45182330 CACATTATGA
45182340 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG
1 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGACG
* * * * * * *
45182387 AGTGCTAATGTAAGACATGTCTGGAACATGCATCGGCCTTGAGATG
1 A-AGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACG
* * *
45182433 TAAGCCAGTGTAAGACATGTTTGGGACATGCGTCAGC-TATGA-AAG
1 -AAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCAT-TGAGACG
* *
45182478 ATAGTCAGTGTAAGACCATGTCTGAGACATGGCATC
1 A-AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
45182514 GACACCTTAC
Statistics
Matches: 102, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
44 1 0.01
45 15 0.15
46 57 0.56
47 19 0.19
48 10 0.10
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (45 bp):
AAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACG
Found at i:45185041 original size:22 final size:22
Alignment explanation
Indices: 45184993--45185041 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
45184983 GATTCATGCT
45184993 AAGA-GTTAGCACAATGCATAG
1 AAGAGGTTAGCACAATGCATAG
* * *
45185014 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTAGCACAATGCATAG
45185036 AAGAGG
1 AAGAGG
45185042 ATGAAGATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (22 bp):
AAGAGGTTAGCACAATGCATAG
Found at i:45187569 original size:23 final size:24
Alignment explanation
Indices: 45187543--45187587 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
45187533 TTATTATGCC
45187543 AATTT-TATAAATAAAAAACAACA
1 AATTTATATAAATAAAAAACAACA
45187566 AATTTATATAAATAAAAAACAA
1 AATTTATATAAATAAAAAACAA
45187588 AATAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (24 bp):
AATTTATATAAATAAAAAACAACA
Found at i:45187599 original size:20 final size:24
Alignment explanation
Indices: 45187548--45187596 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
45187538 ATGCCAATTT
*
45187548 TATAAATAAAAAACAACAAATTTA
1 TATAAATAAAAAACAACAAATTAA
*
45187572 TATAAATAAAAAACAAAATAATTAA
1 TATAAATAAAAAACAACA-AATTAA
45187597 ATAGTATCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.24
Consensus pattern (24 bp):
TATAAATAAAAAACAACAAATTAA
Found at i:45196736 original size:40 final size:39
Alignment explanation
Indices: 45196680--45196887 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
45196670 TGAATGATAC
* * *
45196680 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTATAT
* *
45196720 ACGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTATAT
* *
45196760 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTATAT
* *
45196800 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGT--TATAT
* * **
45196840 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTATAT
45196880 CC-GGCTAA
1 CCGGGCTAA
45196888 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 135 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTATAT
Found at i:45196813 original size:80 final size:79
Alignment explanation
Indices: 45196680--45196887 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 79
45196670 TGAATGATAC
* * *
45196680 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATACGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTC
*** *
45196744 GTGCAAGTTGTTATAT
64 GTGCAAGTTACCAAAT
* *
45196760 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCG
45196825 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
45196840 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
45196888 ATTCCGAAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
79 8 0.07
80 99 0.88
81 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:45205243 original size:40 final size:40
Alignment explanation
Indices: 45205198--45205365 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
45205188 CGGAATATAA
*
45205198 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
45205238 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
45205278 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
45205318 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
45205358 CCGGATAT
1 CCGGATAT
45205366 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45205348 original size:80 final size:80
Alignment explanation
Indices: 45205214--45205365 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
45205204 ATAAGCATGT
* *
45205214 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
45205279 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
45205294 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
45205357 CCCGGATAT
64 CCCGGATAT
45205366 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:45213695 original size:40 final size:40
Alignment explanation
Indices: 45213612--45213819 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
45213602 CGGGATTTAA
* * * * * *
45213612 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
45213652 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
45213692 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
45213732 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
45213772 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
45213812 CCGGATAT
1 CCGGATAT
45213820 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:45213732 original size:80 final size:80
Alignment explanation
Indices: 45213638--45213819 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
45213628 GCTCGATTGT
* * *** * * * **
45213638 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
45213703 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
45213718 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
45213783 TACTAGCATAATTGC
66 AACTAGCACAAATGC
45213798 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
45213820 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:45221754 original size:79 final size:80
Alignment explanation
Indices: 45221659--45221839 Score: 202
Period size: 79 Copynumber: 2.3 Consensus size: 80
45221649 GCTCGATTGT
* * *** * * * **
45221659 CTTCGGGACCTAGCCCGGTTATAGTGATTCACACGATTGCCTTCGGGTCTTAACCC-GATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCACACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
45221723 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* * *
45221738 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCACACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
45221803 TACTAGCATAATTGC
66 AACTAGCACAAATGC
45221818 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
45221840 CATTCCAATG
Statistics
Matches: 83, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
79 46 0.55
80 37 0.45
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCACACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:45221787 original size:40 final size:40
Alignment explanation
Indices: 45221690--45221839 Score: 169
Period size: 40 Copynumber: 3.8 Consensus size: 40
45221680 TAGTGATTCA
* * * ** *
45221690 CACGATTGCCTTCGGGTCTTAACCC-GATTTGGTAACTTG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
* * *
45221729 CACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
*
45221769 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAG
1 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
* *
45221809 CA-TAATTGCCTTCGGGACTTAGCCCGGATAT
1 CACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
45221840 CATTCCAATG
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 24 0.25
40 71 0.75
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
CACGAATGCCTTCGGGTCTTAGCCCGGATATAATAACTAG
Found at i:45225170 original size:13 final size:13
Alignment explanation
Indices: 45225152--45225177 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45225142 TGCCGAAACT
45225152 AGGAAAAAAAAAA
1 AGGAAAAAAAAAA
45225165 AGGAAAAAAAAAA
1 AGGAAAAAAAAAA
45225178 GAAAGGCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
AGGAAAAAAAAAA
Found at i:45227013 original size:49 final size:49
Alignment explanation
Indices: 45226955--45227259 Score: 310
Period size: 49 Copynumber: 5.9 Consensus size: 49
45226945 GTATGAGATG
45226955 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
45227004 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
45227053 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGCCAATGTGATGAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT-G--AAAGTG-T--A
* * * * * ** * * *
45227108 TGTGAAAGTGTATATATATGTG-ATAA-GGCCTAATG-GCCGATGTGTTGAATGTGAAAGTG
1 TAT-ATA-TGT-GATA-A-G-GCCTAATGGCC-GATGTGATGA-ATG-TGAAAGT----GTA
45227167 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
45227216 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
45227260 CATATGTGTG
Statistics
Matches: 213, Mismatches: 21, Indels: 44
0.77 0.08 0.16
Matches are distributed among these distances:
49 134 0.63
50 1 0.00
52 5 0.02
53 8 0.04
54 9 0.04
55 11 0.05
56 5 0.02
57 6 0.03
58 10 0.05
59 10 0.05
60 10 0.05
61 3 0.01
62 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:45227101 original size:18 final size:18
Alignment explanation
Indices: 45227074--45227111 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
45227064 TAAGGCCTAA
*
45227074 TGGCCGATGTGATGAATG
1 TGGCCAATGTGATGAATG
45227092 TGGCCAATGTGATGAATG
1 TGGCCAATGTGATGAATG
45227110 TG
1 TG
45227112 AAAGTGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.11, G:0.37, T:0.29
Consensus pattern (18 bp):
TGGCCAATGTGATGAATG
Found at i:45227102 original size:67 final size:67
Alignment explanation
Indices: 45227025--45227160 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 67
45227015 TAAGGCCTAA
*
45227025 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45227090 TG
66 TG
*
45227092 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45227157 TG
66 TG
45227159 TG
1 TG
45227161 AAAGTGTATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.29, C:0.09, G:0.31, T:0.31
Consensus pattern (67 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TG
Found at i:45227122 original size:116 final size:114
Alignment explanation
Indices: 45226976--45227207 Score: 428
Period size: 116 Copynumber: 2.0 Consensus size: 114
45226966 TAAGGCCTAA
*
45226976 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45227041 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
45227092 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGTTGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
45227157 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
45227206 TG
1 TG
45227208 AAAGTGTATA
Statistics
Matches: 114, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
114 41 0.36
116 73 0.64
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.31
Consensus pattern (114 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
Found at i:45227223 original size:163 final size:164
Alignment explanation
Indices: 45226955--45227253 Score: 573
Period size: 163 Copynumber: 1.8 Consensus size: 164
45226945 GTATGAGATG
45226955 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGG
45227020 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
65 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
45227085 ATGAATGTGGCCAATGTGATGAATGTGAAAGTGTA
130 ATGAATGTGGCCAATGTGATGAATGTGAAAGTGTA
*
45227120 TATATATGTGATAAGGCCTAATGGCCGATGTGTTGAATGTGAAAGTG-TATATATGTGATAAGGC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
45227184 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
66 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
45227249 TGAAT
131 TGAAT
45227254 ATGAAACATA
Statistics
Matches: 133, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
163 87 0.65
165 46 0.35
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (164 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:45227415 original size:37 final size:37
Alignment explanation
Indices: 45227365--45227436 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
45227355 GGTGAAACCA
45227365 GATGACTACGTGTGGAGATTATATCCAGGTAAGACCC
1 GATGACTACGTGTGGAGATTATATCCAGGTAAGACCC
* *
45227402 GATGACTACGTGTGGAGATTATGTCCGGGTAAGAC
1 GATGACTACGTGTGGAGATTATATCCAGGTAAGAC
45227437 TTCGTAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (37 bp):
GATGACTACGTGTGGAGATTATATCCAGGTAAGACCC
Found at i:45231950 original size:29 final size:29
Alignment explanation
Indices: 45231889--45231987 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
45231879 ACAGTAAGTC
45231889 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
45231917 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
45231946 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
45231974 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45231988 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:45237705 original size:29 final size:29
Alignment explanation
Indices: 45237644--45237742 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
45237634 ACAGTAAGTC
45237644 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
45237672 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
45237701 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
45237729 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45237743 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:45238865 original size:17 final size:18
Alignment explanation
Indices: 45238828--45238865 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
45238818 CACTTTTTTT
45238828 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
45238847 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
45238864 TT
1 TT
45238866 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:45242007 original size:29 final size:29
Alignment explanation
Indices: 45241975--45242109 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
45241965 ATACCCTCCG
** * *
45241975 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
45242004 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
45242033 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
45242062 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
45242091 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
45242110 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:45242042 original size:58 final size:58
Alignment explanation
Indices: 45241921--45242110 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
45241911 TACTCGATTT
* * * *** *
45241921 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
45241979 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
45242037 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
45242095 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
45242111 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:45244249 original size:2 final size:2
Alignment explanation
Indices: 45244242--45244285 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
45244232 GACATATCTT
45244242 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45244284 TA
1 TA
45244286 CTACAGTCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45246508 original size:4 final size:4
Alignment explanation
Indices: 45246494--45246523 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
45246484 TGGATTAAAT
45246494 TGAA TGAAA TGAA TGAA TGAA TGAA TGAA T
1 TGAA TG-AA TGAA TGAA TGAA TGAA TGAA T
45246524 TTGTATTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (4 bp):
TGAA
Found at i:45247699 original size:27 final size:27
Alignment explanation
Indices: 45247681--45247890 Score: 267
Period size: 27 Copynumber: 7.8 Consensus size: 27
45247671 TTACCAAAGA
* * *
45247681 ACCCTCGATTTACAGAATTACCGTTCT
1 ACCCTCGATTTATAGAATTACCATTTT
45247708 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
*
45247735 ACCCTCGAGTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* *
45247762 ACCCTCGATTTATAGAATTAACGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* * * *
45247789 GCCCTCGATTTACAGAGTTACCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
45247816 ACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* * * * *
45247843 ACTCTCGACTTACAGAATTATCGTTTT
1 ACCCTCGATTTATAGAATTACCATTTT
* *
45247870 ACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTATAGAATTAC
45247891 TGAAATACGC
Statistics
Matches: 159, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 159 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (27 bp):
ACCCTCGATTTATAGAATTACCATTTT
Found at i:45247779 original size:81 final size:81
Alignment explanation
Indices: 45247681--45247890 Score: 312
Period size: 81 Copynumber: 2.6 Consensus size: 81
45247671 TTACCAAAGA
* * *
45247681 ACCCTCGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCATTTTACCCTCGAGTT
1 ACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGAGTT
45247746 ATAGAATTACCATTTT
66 ATAGAATTACCATTTT
* * * * *
45247762 ACCCTCGATTTATAGAATTAACGTTTTGCCCTCGATTTACAGAGTTACCGTTTTACCCTCGATTT
1 ACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGAGTT
45247827 ATAGAATTACCATTTT
66 ATAGAATTACCATTTT
* * * *
45247843 ACTCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTAC
45247891 TGAAATACGC
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 114 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (81 bp):
ACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGAGTT
ATAGAATTACCATTTT
Found at i:45247794 original size:54 final size:54
Alignment explanation
Indices: 45247681--45247890 Score: 303
Period size: 54 Copynumber: 3.9 Consensus size: 54
45247671 TTACCAAAGA
*
45247681 ACCCTCGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
* * * * *
45247735 ACCCTCGAGTTATAGAATTACCATTTTACCCTCGATTTATAGAATTAACGTTTT
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
* *
45247789 GCCCTCGATTTACAGAGTTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
* * * * *
45247843 ACTCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTAC
1 ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTAC
45247891 TGAAATACGC
Statistics
Matches: 136, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 136 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (54 bp):
ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTT
Found at i:45247910 original size:54 final size:54
Alignment explanation
Indices: 45247667--45247918 Score: 202
Period size: 54 Copynumber: 4.7 Consensus size: 54
45247657 CTCAAATTGT
* * * *
45247667 AAAATTACCA-AAGAACCCTCGATTTACAGAATTACCGTTCTACCCTCGATTTAT
1 AAAATTACCATAA-TACGCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* ** * * * * *
45247721 AGAATTACCATTTTACCCTCGAGTTATAGAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCATAATACGCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* * * ** * * * *
45247775 AGAATTAACGTTTTGCCCTCGATTTACAGAGTTACCGTTTTACCCTCGATTTAT
1 AAAATTACCATAATACGCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* ** * * *
45247829 AGAATTACCATTTTACTCTCGACTTACAGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCATAATACGCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
* * *
45247883 AAAATTACTGA-AATACGCTTGATTTACAAAATTACC
1 AAAATTAC-CATAATACGCTCGATTTACAGAATTACC
45247919 AAAATACCCT
Statistics
Matches: 164, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
54 163 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (54 bp):
AAAATTACCATAATACGCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAC
Found at i:45247923 original size:27 final size:27
Alignment explanation
Indices: 45247869--45248300 Score: 346
Period size: 27 Copynumber: 16.0 Consensus size: 27
45247859 ATTATCGTTT
* ** **
45247869 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
45247896 TACGCTTGATTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
45247923 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * *
45247950 TAACCATGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
45247977 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * * * *
45248004 TACCCTTGGTTTATAAATTTGCCAGAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * *
45248031 TACCCCTGGTTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
45248058 TACCCCT-AGTTTGTGAAATTACCAAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* * ***
45248085 TACCCCTGATTTGTGAAATTATTGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
45248112 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
45248139 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* *
45248166 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* **
45248193 TACCCTTGATTTGTGAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
* * ***
45248220 TACCC-TCAGTTTGCAAAATTATTGAAA
1 TACCCTTGA-TTTGTAAAATTACCAAAA
* *
45248247 TACCCTCGATTTGTAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACCAAAA
** *
45248274 TACCCTCAACTTGTAAAAATTACCAAA
1 TACCCTTGATTTGT-AAAATTACCAAA
45248301 GTACTCCCGA
Statistics
Matches: 331, Mismatches: 69, Indels: 9
0.81 0.17 0.02
Matches are distributed among these distances:
26 2 0.01
27 316 0.95
28 13 0.04
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACCAAAA
Found at i:45247931 original size:81 final size:80
Alignment explanation
Indices: 45247666--45247932 Score: 257
Period size: 81 Copynumber: 3.3 Consensus size: 80
45247656 CCTCAAATTG
* * * *
45247666 TAAAATTACCAAAGA-ACCCTCGATTTACAGAATTACCGTTCTACCCTCGATTTATAGAATTACC
1 TAAAATTACCAAA-ATACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTACG
*
45247730 ATTTTACCCTCGAGTTA
65 A-TTTACCCTCGATTTA
* *** * * *
45247747 TAGAATTACCATTTTACCCTCGATTTATAGAATTAACGTTTTGCCCTCGATTTACAGAGTTACCG
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTA-CG
*
45247812 TTTTACCCTCGATTTA
65 ATTTACCCTCGATTTA
* *** * * * *
45247828 TAGAATTACCATTTTACTCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACTG
1 TAAAATTACCAAAATACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTAC-G
** * *
45247893 AAATACGCTTGATTTA
65 ATTTACCCTCGATTTA
*
45247909 CAAAATTACCAAAATACCCTCGAT
1 TAAAATTACCAAAATACCCTCGAT
45247933 CAGTAAAATT
Statistics
Matches: 151, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 149 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.10, T:0.35
Consensus pattern (80 bp):
TAAAATTACCAAAATACCCTCGATTTACAGAATTAACGTTTTACCCTCGATTTACAGAATTACGA
TTTACCCTCGATTTA
Found at i:45248348 original size:27 final size:26
Alignment explanation
Indices: 45248316--45248458 Score: 171
Period size: 27 Copynumber: 5.3 Consensus size: 26
45248306 CCCGATTTAC
*
45248316 AGAATTATTGAAATACCGCTGTAGGGT
1 AGAATTACTGAAATACC-CTGTAGGGT
* **
45248343 ACAATTACCAAAATACCCTTGTAGGGT
1 AGAATTACTGAAATACCC-TGTAGGGT
*
45248370 AGAATTACTGAAATACCCCTATAGGGT
1 AGAATTACTGAAATA-CCCTGTAGGGT
*
45248397 AGAA-TAATCGAAATACCCTTGTAGGGT
1 AGAATTACT-GAAATACCC-TGTAGGGT
45248424 AGAATTACTGAAATACCCCTGTAGGGT
1 AGAATTACTGAAATA-CCCTGTAGGGT
45248451 AGAATTAC
1 AGAATTAC
45248459 CAAGATACCC
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.07
27 83 0.84
28 9 0.09
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (26 bp):
AGAATTACTGAAATACCCTGTAGGGT
Found at i:45248374 original size:54 final size:54
Alignment explanation
Indices: 45248316--45248485 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
45248306 CCCGATTTAC
* * *
45248316 AGAATTATTGAAATACCGCTGTAGGGTACAATTACCAAAATACCCTTGTAGGGT
1 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGT
* * * *
45248370 AGAATTACTGAAATACCCCTATAGGGTAGAATAATCGAAATACCCTTGTAGGGT
1 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGT
* **
45248424 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAGATACCCTTGCGGGGT
1 AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGT
*
45248478 AAAATTAC
1 AGAATTAC
45248486 CATTTTTCCC
Statistics
Matches: 101, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (54 bp):
AGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGT
Found at i:45248466 original size:27 final size:26
Alignment explanation
Indices: 45248326--45248487 Score: 162
Period size: 27 Copynumber: 6.0 Consensus size: 26
45248316 AGAATTATTG
* *
45248326 AAATACCGCTGTAGGGTACAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
* *
45248352 AAAATACCCTTGTAGGGTAGAATTACTG
1 -AAATACCCCTGTAGGGTAGAATTAC-C
* * *
45248380 AAATACCCCTATAGGGTAGAATAATCG
1 AAATACCCCTGTAGGGTAGAATTA-CC
* *
45248407 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTAC-C
45248434 AAATACCCCTGTAGGGTAGAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
* ** *
45248460 AAGATACCCTTGCGGGGTAAAATTACC
1 AA-ATACCCCTGTAGGGTAGAATTACC
45248487 A
1 A
45248488 TTTTTCCCCT
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
26 3 0.03
27 111 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (26 bp):
AAATACCCCTGTAGGGTAGAATTACC
Found at i:45248467 original size:81 final size:81
Alignment explanation
Indices: 45248316--45248468 Score: 211
Period size: 81 Copynumber: 1.9 Consensus size: 81
45248306 CCCGATTTAC
* * * *
45248316 AGAATTATTGAAATACCGCTGTAGGGTACAATTACCAAAATACCCTTGTAGGGTAGAATTACTGA
1 AGAATAATCGAAATACCGCTGTAGGGTACAATTACCAAAATACCCCTGTAGGGTAGAATTACTCA
45248381 AATACCCCTATAGGGT
66 AATACCCCTATAGGGT
* **
45248397 AGAATAATCGAAATACC-CTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTAC-C
1 AGAATAATCGAAATACCGC-TGTAGGGTACAATTACCAAAATACCCCTGTAGGGTAGAATTACTC
45248460 AAGATACCC
65 AA-ATACCC
45248469 TTGCGGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
80 3 0.05
81 60 0.95
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (81 bp):
AGAATAATCGAAATACCGCTGTAGGGTACAATTACCAAAATACCCCTGTAGGGTAGAATTACTCA
AATACCCCTATAGGGT
Found at i:45248725 original size:25 final size:25
Alignment explanation
Indices: 45248691--45248785 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
45248681 AGGAAGTGCT
* **
45248691 AAAAGGGCTTTGCACCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
45248716 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
45248741 AAAAGGGCTTTGCCCCGGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
45248766 AAAATGGCTTTTCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
45248786 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:45251055 original size:27 final size:27
Alignment explanation
Indices: 45251025--45251340 Score: 380
Period size: 27 Copynumber: 11.7 Consensus size: 27
45251015 CCAAAGTACA
* *
45251025 CTCGGTTTACAGAATTACCGTTCTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
45251052 CTCGATTTATAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
45251079 ATCAATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
45251106 CTCGATTTACATAATTACAGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
*
45251133 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
45251160 CTCGATTTACTGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
45251187 ATCGATTTATAGAATTACTGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
45251214 CTCGATTTACAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
45251241 CTCAATTTATAGAATTACCGTTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * *
45251268 CTCGACTTACAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCGTTTTACC
* * ***
45251295 CTCGATTTACAAAATTACTGAAATACC
1 CTCGATTTACAGAATTACCGTTTTACC
* *
45251322 CTTGATTTACAAAATTACC
1 CTCGATTTACAGAATTACC
45251341 AAAATACCCT
Statistics
Matches: 247, Mismatches: 42, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 247 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCGTTTTACC
Found at i:45251345 original size:27 final size:27
Alignment explanation
Indices: 45251264--45251717 Score: 274
Period size: 27 Copynumber: 16.8 Consensus size: 27
45251254 ATTACCGTTT
* * * ***
45251264 TACCCTCGACTTACAAAATTACCATTT
1 TACCCTTGATTTATAAAATTACCAAAA
* * **
45251291 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
45251318 TACCCTTGATTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
45251345 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * *
45251372 TACTCC-TGGTTTGTAAAATTACTAAAA
1 TAC-CCTTGATTTATAAAATTACCAAAA
* * *
45251399 TACCCTTGGTTTATAAATTTGCCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
45251426 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* *
45251453 TACCCCT-AGTTTGTGAAAA-TACCAAAA
1 TACCCTTGA-TTTAT-AAAATTACCAAAA
* * * * *
45251480 TACCCCTAATTTGTGAAATTACTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
45251507 TACCCTCGACTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
45251534 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * *
45251561 TACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* * * **
45251588 TACCCTTAATTTGTGAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* ** **
45251615 TACCC-TCAGTTTGCAAAATTACTGAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * **
45251642 TACCCTCGATTTGTAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* ** *
45251669 TACGCTCAACTTGTA-AAAATTACCAAAG
1 TACCCTTGA-TT-TATAAAATTACCAAAA
** *
45251697 TACCCCCGATTTACAAAATTA
1 TACCCTTGATTTATAAAATTA
45251718 TTGAAATACC
Statistics
Matches: 351, Mismatches: 63, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.03
27 312 0.89
28 27 0.08
29 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:45251349 original size:54 final size:54
Alignment explanation
Indices: 45251129--45251717 Score: 294
Period size: 54 Copynumber: 10.9 Consensus size: 54
45251119 ATTACAGTTT
* **** * ** ***
45251129 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACTGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * ***** * * ****
45251183 TACCATCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * **** * * ***
45251237 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGACTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* **
45251291 TACCCTCGATTTACAAAATTACTGAAATACCCTTGATTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * ** *
45251345 TACCCTCGA-TCAGTAAAATTACCAAAATACTCC-TGGTTTGTAAAATTACTAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAATAC-CCTTGATTTACAAAATTACCAAAA
* * * * * **
45251399 TACCCTTGGTTTATAAATTTGCCAAAATACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGA-TTTACAAAATTACCAAAA
* * * * *** *
45251453 TACCC-CTAGTTTGTGAAAA-TACCAAAATACCCCTAATTTGTGAAATTACTAAAA
1 TACCCTCGA-TTTAT-AAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * *
45251507 TACCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * * *** **
45251561 TACCC-CTGGTTTGTAAAATTACCAAAATACCCTTAATTTGTGAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
** ** * ** **
45251615 TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAA
1 TACCCTCGA-TTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
* * * **
45251669 TACGCTCAACTTGTA-AAAATTACCAAAGTACCCCCGATTTACAAAATTA
1 TACCCTCGA-TT-TATAAAATTACCAAAATACCCTTGATTTACAAAATTA
45251718 TTGAAATACC
Statistics
Matches: 439, Mismatches: 81, Indels: 29
0.80 0.15 0.05
Matches are distributed among these distances:
53 9 0.02
54 387 0.88
55 42 0.10
56 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACCAAAA
Found at i:45251349 original size:81 final size:81
Alignment explanation
Indices: 45251129--45251728 Score: 352
Period size: 81 Copynumber: 7.4 Consensus size: 81
45251119 ATTACAGTTT
*** * * *** *
45251129 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACT-GAATTACCATTTTACCATCGAT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTGATTTA-TAAAATTACCAAAATACCCTCGAT
* *****
45251193 TTATAGAATTACTGTTT
65 TTATAAAATTACCAAAA
* *** ** * **** *
45251210 TACCCTCGATTTACAGAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGACT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATT
* ***
45251275 TACAAAATTACCATTT
66 TATAAAATTACCAAAA
* *
45251291 TACCCTCGATTTACAAAATTACTGAAATACCCTTGATTTACAAAATTACCAAAATACCCTCGA-T
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATT
*
45251355 CAGTAAAATTACCAAAA
66 TA-TAAAATTACCAAAA
* ** ** * * * *
45251372 TACTCCT-GGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAATTTGCCAAAATACCC-CTAG
1 TAC-CCTCGATTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGA-
*
45251435 TTTGTAAAATTACCAAAA
64 TTTATAAAATTACCAAAA
* ** * * * * * *
45251453 TACCC-CTAGTTTGTGAAAA-TACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGA
1 TACCCTCGA-TTT-ACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGA
* *
45251516 CTTGTAAAATTACCAAAA
64 TTTATAAAATTACCAAAA
* * * * * * **
45251534 TACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTAATT
1 TACCCTCGATTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATT
* * **
45251599 TGTGAAATTACTGAAA
66 TATAAAATTACCAAAA
* * * * ** * *
45251615 TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACGCTCAAC
1 TACCCTCGA-TTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGA-
*
45251679 TTGTA-AAAATTACCAAAG
64 TT-TATAAAATTACCAAAA
* **
45251697 TACCCCCGATTTACAAAATTATTGAAATACCC
1 TACCCTCGATTTACAAAATTACCGAAATACCC
45251729 CTGTAGGGTA
Statistics
Matches: 416, Mismatches: 88, Indels: 29
0.78 0.17 0.05
Matches are distributed among these distances:
80 11 0.03
81 355 0.85
82 48 0.12
83 2 0.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCGAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATT
TATAAAATTACCAAAA
Found at i:45251743 original size:27 final size:27
Alignment explanation
Indices: 45251713--45251863 Score: 212
Period size: 27 Copynumber: 5.6 Consensus size: 27
45251703 CGATTTACAA
45251713 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
* *
45251740 AATTACTGAAATACCCCTGTAGGATAG
1 AATTATTGAAATACCCCTGTAGGGTAG
* *
45251767 AATTACTGAAATAACCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
** * *
45251794 AATTATCAAAATACCCTTGTAGGGTAA
1 AATTATTGAAATACCCCTGTAGGGTAG
45251821 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
* *
45251848 AATTATCGAGATACCC
1 AATTATTGAAATACCC
45251864 TTATCGGGTA
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (27 bp):
AATTATTGAAATACCCCTGTAGGGTAG
Found at i:45251864 original size:54 final size:54
Alignment explanation
Indices: 45251711--45251879 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
45251701 CCCGATTTAC
* *
45251711 AAAATTATTGAAATACCCCTGTAGGGTAGAATTA-CTGAAATACCCCTGTAGGAT
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCTTGTAGGGT
* * * *
45251765 AGAATTACTGAAATAACCCTGTAGGGTAGAATTATCAAAATACCCTTGTAGGGT
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
* * *
45251819 AAAATTATTGAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTATCGGGT
1 AAAATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
45251873 AAAATTA
1 AAAATTA
45251880 CCATTTTGCC
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
54 100 0.99
55 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (54 bp):
AAAATTATTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGT
Found at i:45251872 original size:27 final size:27
Alignment explanation
Indices: 45251711--45251879 Score: 164
Period size: 27 Copynumber: 6.3 Consensus size: 27
45251701 CCCGATTTAC
* *
45251711 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
* * *
45251738 AGAATTA-CTGAAATACCCCTGTAGGAT
1 AAAATTATC-GAAATACCCTTGTAGGGT
*
45251765 AGAATTA-CTGAAATAACCC-TGTAGGGT
1 AAAATTATC-GAAAT-ACCCTTGTAGGGT
* *
45251792 AGAATTATCAAAATACCCTTGTAGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
* *
45251819 AAAATTATTGAAATACCCCTGTAGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
* * * *
45251846 AGAATTATCGAGATACCCTTATCGGGT
1 AAAATTATCGAAATACCCTTGTAGGGT
45251873 AAAATTA
1 AAAATTA
45251880 CCATTTTGCC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 4 0.03
27 113 0.93
28 5 0.04
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTTGTAGGGT
Found at i:45252120 original size:25 final size:25
Alignment explanation
Indices: 45252086--45252180 Score: 156
Period size: 25 Copynumber: 3.8 Consensus size: 25
45252076 AGGAAGTGCT
*
45252086 AAAAGGGCTTTGCCCCAGTTTATAG
1 AAAAGGGCTTTGCCCCAGTTTACAG
*
45252111 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
45252136 AAAAGGGCTTTGCCCCAGTTTACCA-
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
45252161 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
45252181 ATTAAAAAAG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
25 65 0.98
26 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:45261198 original size:25 final size:25
Alignment explanation
Indices: 45261170--45261239 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
45261160 CTCTTTTAAT
*
45261170 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
45261195 AACTGGGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
45261220 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
45261240 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:45261564 original size:80 final size:81
Alignment explanation
Indices: 45261386--45261565 Score: 263
Period size: 80 Copynumber: 2.2 Consensus size: 81
45261376 CCACGCAGTC
* ** *
45261386 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAACTCTACCCTACAAAGGTATTT
*
45261451 CAGTAATTCTACCCTA
66 CAGTAATTCTACACTA
* * * *
45261467 CAGGGGTATTTCAGTAATTCTACCCTATA-GGGTATTTTAGTAACTCTACCCTACAAAGGTATTT
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAACTCTACCCTACAAAGGTATTT
45261531 CAGTAATTCTACACTA
66 CAGTAATTCTACACTA
*
45261547 CAAGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATT
45261566 TTGCTAATCG
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 61 0.70
81 26 0.30
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAACTCTACCCTACAAAGGTATTT
CAGTAATTCTACACTA
Found at i:45261565 original size:27 final size:27
Alignment explanation
Indices: 45261386--45261557 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
45261376 CCACGCAGTC
*
45261386 CAAGGGTATTTCGGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
45261413 CAGGGGTATTTCGGTATTTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
45261440 CAAGGGTATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
*
45261467 CAGGGGTATTTCAGTAATTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* * *
45261494 -TAGGGTATTTTAGTAACTCTACCCTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
* *
45261520 CAAAGGTATTTCAGTAATTCTACACTA
1 CAAGGGTATTTCAGTAATTCTACCCTA
45261547 CAAGGGTATTT
1 CAAGGGTATTT
45261558 TGGTAATTTT
Statistics
Matches: 128, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.17
27 106 0.83
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTCTACCCTA
Found at i:45261614 original size:26 final size:27
Alignment explanation
Indices: 45261549--45261618 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 27
45261539 CTACACTACA
* *
45261549 AGGGTATTTTGGTAATTTTGCTAATCG
1 AGGGTAATTTGGTAATTCTGCTAATCG
**
45261576 AGGGTAAAATGGTAATTCTG-TAATCG
1 AGGGTAATTTGGTAATTCTGCTAATCG
* *
45261602 GGGGTACTTTGGTAATT
1 AGGGTAATTTGGTAATT
45261619 TGGTAAACTA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 19 0.54
27 16 0.46
ACGTcount: A:0.26, C:0.07, G:0.29, T:0.39
Consensus pattern (27 bp):
AGGGTAATTTGGTAATTCTGCTAATCG
Found at i:45270649 original size:32 final size:32
Alignment explanation
Indices: 45270607--45270672 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
45270597 AAATCAACAT
*
45270607 GGCCTGGACTTCCTCACACAAGTAGGCCACAC
1 GGCCTAGACTTCCTCACACAAGTAGGCCACAC
** *
45270639 GGCCTAGACTTCCTCACACGGGTAGGCTACAC
1 GGCCTAGACTTCCTCACACAAGTAGGCCACAC
45270671 GG
1 GG
45270673 TCGTGTTCAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.17
Consensus pattern (32 bp):
GGCCTAGACTTCCTCACACAAGTAGGCCACAC
Done.