Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 148 of 318
Found at i:45272072 original size:13 final size:13
Alignment explanation
Indices: 45272054--45272078 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45272044 AGGATTATTC
45272054 TTTTCTTTCTTTT
1 TTTTCTTTCTTTT
45272067 TTTTCTTTCTTT
1 TTTTCTTTCTTT
45272079 ATCTAACCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:45273264 original size:11 final size:11
Alignment explanation
Indices: 45273238--45273290 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
45273228 ACATTGATAT
*
45273238 ACATGATAT-A
1 ACATGATATGC
45273248 ACATGATATGC
1 ACATGATATGC
45273259 ACATGATATG-
1 ACATGATATGC
**
45273269 TTATGATATGC
1 ACATGATATGC
45273280 ACATGATATGC
1 ACATGATATGC
45273291 TATGATATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 17 0.47
11 19 0.53
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (11 bp):
ACATGATATGC
Found at i:45273264 original size:21 final size:21
Alignment explanation
Indices: 45273238--45273288 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
45273228 ACATTGATAT
45273238 ACATGATATAACATGATATGC
1 ACATGATATAACATGATATGC
***
45273259 ACATGATATGTTATGATATGC
1 ACATGATATAACATGATATGC
45273280 ACATGATAT
1 ACATGATAT
45273289 GCTATGATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (21 bp):
ACATGATATAACATGATATGC
Found at i:45273289 original size:21 final size:21
Alignment explanation
Indices: 45273250--45273298 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
45273240 ATGATATAAC
*
45273250 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
45273271 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
45273292 ATGATAT
1 ATGATAT
45273299 ATTCACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:45273380 original size:25 final size:25
Alignment explanation
Indices: 45273346--45273416 Score: 108
Period size: 25 Copynumber: 2.8 Consensus size: 25
45273336 AGGAAGTGTG
45273346 GAAAAGGGCTTTGCCCCAGTTTA-C
1 GAAAAGGGCTTTGCCCCAGTTTATC
*
45273370 AGAAAAAGGCTTTGCCCCAGTTTATC
1 -GAAAAGGGCTTTGCCCCAGTTTATC
*
45273396 GAAAAGGGCTTTGTCCCAGTT
1 GAAAAGGGCTTTGCCCCAGTT
45273417 ATTTAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
GAAAAGGGCTTTGCCCCAGTTTATC
Found at i:45278119 original size:21 final size:22
Alignment explanation
Indices: 45278084--45278124 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
45278074 TTTAGCAGAA
45278084 CAATACAATATCATTTAATAAT
1 CAATACAATATCATTTAATAAT
45278106 CAATACAA-ATCATTTAATA
1 CAATACAATATCATTTAATA
45278125 TGCTTTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (22 bp):
CAATACAATATCATTTAATAAT
Found at i:45283483 original size:50 final size:48
Alignment explanation
Indices: 45283358--45283533 Score: 190
Period size: 50 Copynumber: 3.5 Consensus size: 48
45283348 TGAGGTCGCA
* * * * *
45283358 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTATAACTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAA-TT-GGTCACG
* **
45283409 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCGATAATT-GGTCACG
* * *
45283459 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCG-ATAATTGGTCACG
*
45283508 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
45283534 TGCGTACCAG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 32 0.30
50 42 0.39
51 33 0.31
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGATAATTGGTCACG
Found at i:45284057 original size:15 final size:15
Alignment explanation
Indices: 45284037--45284069 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
45284027 GGTTATAATA
45284037 TATATTCTTAGAATC
1 TATATTCTTAGAATC
*
45284052 TATATTCTTATAATC
1 TATATTCTTAGAATC
45284067 TAT
1 TAT
45284070 TTCGATGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.03, T:0.52
Consensus pattern (15 bp):
TATATTCTTAGAATC
Found at i:45286325 original size:16 final size:15
Alignment explanation
Indices: 45286276--45286325 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
45286266 GTGCTGTAAA
45286276 TTGGA-TTCTTGTATC
1 TTGGATTTCTT-TATC
*
45286291 ATGGATTTCTTTATC
1 TTGGATTTCTTTATC
45286306 TTGGATTTCTTTATTC
1 TTGGATTTCTTTA-TC
45286322 TTGG
1 TTGG
45286326 CTTCTCTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 20 0.65
16 11 0.35
ACGTcount: A:0.14, C:0.12, G:0.18, T:0.56
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:45305134 original size:21 final size:20
Alignment explanation
Indices: 45305096--45305134 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
45305086 CCACTTAAAT
*
45305096 AAGGGCACACGCCCGTGCAG
1 AAGGGCACACGCACGTGCAG
*
45305116 AAGGGCAACACGCATGTGC
1 AAGGGC-ACACGCACGTGC
45305135 GGCCATTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.28, C:0.31, G:0.33, T:0.08
Consensus pattern (20 bp):
AAGGGCACACGCACGTGCAG
Found at i:45310447 original size:27 final size:28
Alignment explanation
Indices: 45310393--45310460 Score: 129
Period size: 27 Copynumber: 2.5 Consensus size: 28
45310383 ATTTGTACAA
45310393 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
45310421 CACTAAGTGTGCGAG-TTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAG
45310448 CACTAAGTGTGCG
1 CACTAAGTGTGCG
45310461 GACTCACTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.62
28 15 0.38
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATATAG
Found at i:45310471 original size:27 final size:27
Alignment explanation
Indices: 45310393--45310472 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
45310383 ATTTGTACAA
* * *
45310393 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGAG-CTCACTATATAG
* * *
45310421 CACTAAGTGTGCGAGTTGATTATATAG
1 CACTAAGTGTGCGAGCTCACTATATAG
45310448 CACTAAGTGTGCG-GACTCACTATAT
1 CACTAAGTGTGCGAG-CTCACTATAT
45310473 GTTTTTGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 32 0.67
28 15 0.31
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATAG
Found at i:45315559 original size:40 final size:40
Alignment explanation
Indices: 45315463--45315626 Score: 154
Period size: 40 Copynumber: 4.1 Consensus size: 40
45315453 TGGATTTTAT
* * * * *
45315463 CCGGATATAGCAACTCGCTCAAAAGCCTTCGGGACAT-GC
1 CCGGATATGGGAACTCGCACAAATGCCTTCGGGACTTAGC
* *** * *
45315502 CCGGTTATAATAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATGGGAACTCGCACAAATGCCTTCGGGACTTAGC
*
45315542 CCGGATTTGGGAACTCGCACAAATGCCTTC-GGATCTTAGC
1 CCGGATATGGGAACTCGCACAAATGCCTTCGGGA-CTTAGC
** *
45315582 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATGGGAAC-TCGCACAAATGCCTTCGGGACTTAGC
45315622 CCGGA
1 CCGGA
45315627 CATCATTCGA
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.32
40 58 0.57
41 11 0.11
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATGGGAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:45316340 original size:2 final size:2
Alignment explanation
Indices: 45316333--45316360 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
45316323 ATGTGCAAAC
45316333 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45316361 GCTAGAGCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45333872 original size:40 final size:39
Alignment explanation
Indices: 45333720--45333872 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 39
45333710 GGATATAGCG
* * * * **
45333720 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
* * *
45333759 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT-GGT
45333800 ACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATATGGT
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGT
*
45333839 CACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
45333873 CATCATTCGA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 6 0.06
40 77 0.81
41 12 0.13
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
Found at i:45339967 original size:27 final size:28
Alignment explanation
Indices: 45339911--45339980 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
45339901 AAATTTGTAC
45339911 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45339939 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45339966 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45339981 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:45346820 original size:27 final size:26
Alignment explanation
Indices: 45346772--45346831 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
45346762 GCGAGGCTGC
*
45346772 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45346799 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
45346825 CAGATAT
1 CAGATAT
45346832 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45346926 original size:27 final size:26
Alignment explanation
Indices: 45346878--45346929 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45346868 GCGAGGCTGC
*
45346878 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
45346904 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
45346930 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45348994 original size:47 final size:47
Alignment explanation
Indices: 45348924--45349049 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 47
45348914 GGCAGAGCGC
** *
45348924 CGATGCCATGTCCCAGACATGGTCTTACGGTGGAC-CATACATTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATACATTAAGT
* * *
45348971 TGATGCGATGTCCCAGACATGGTCTTATACTAGCTCATACATTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATACATTAAGT
*
45349018 CGATGCCATGTCCCAGACATGTTCTTACACTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTA
45349050 ACTATCATAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATACATTAAGT
Found at i:45349079 original size:49 final size:50
Alignment explanation
Indices: 45349022--45349146 Score: 144
Period size: 50 Copynumber: 2.5 Consensus size: 50
45349012 TTAAGTCGAT
* * *
45349022 GCCATGTCCCAGACATGTTCTTACACTAACTATCATA-ATCGACGCCGAC
1 GCCATGTCCCAGACATGTTCTTACACTAACTATCACATATCCACGCAGAC
* * *** * *
45349071 GCCATGTCCCAGATATGATCTTACACTGGGTCTCACATATCCACGCAGAT
1 GCCATGTCCCAGACATGTTCTTACACTAACTATCACATATCCACGCAGAC
*
45349121 GCCATGTCCCATACATGTTCTTACAC
1 GCCATGTCCCAGACATGTTCTTACAC
45349147 CGGTTCCTAT
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
49 30 0.48
50 32 0.52
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGTTCTTACACTAACTATCACATATCCACGCAGAC
Found at i:45349143 original size:50 final size:49
Alignment explanation
Indices: 45349019--45349146 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
45349009 ACATTAAGTC
* * *
45349019 GATGCCATGTCCCAGACATGTTCTTACACTAACTATCATAATCGACGCC
1 GATGCCATGTCCCAGACATGTTCTTACACTAACTATCACAATCCACGCA
* * * *** *
45349068 GACGCCATGTCCCAGATATGATCTTACACTGGGTCTCACATATCCACGCA
1 GATGCCATGTCCCAGACATGTTCTTACACTAACTATCACA-ATCCACGCA
*
45349118 GATGCCATGTCCCATACATGTTCTTACAC
1 GATGCCATGTCCCAGACATGTTCTTACAC
45349147 CGGTTCCTAT
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
49 32 0.50
50 32 0.50
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGTTCTTACACTAACTATCACAATCCACGCA
Found at i:45349271 original size:28 final size:28
Alignment explanation
Indices: 45349233--45349291 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
45349223 GAATATCCGA
45349233 TTTTATCCCTAAGGCTCAACCGAGAGTT
1 TTTTATCCCTAAGGCTCAACCGAGAGTT
45349261 TTTTATCCCTAAGGCTCAACCGAGAGTT
1 TTTTATCCCTAAGGCTCAACCGAGAGTT
45349289 TTT
1 TTT
45349292 ACTACCTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (28 bp):
TTTTATCCCTAAGGCTCAACCGAGAGTT
Found at i:45354634 original size:40 final size:40
Alignment explanation
Indices: 45354575--45354746 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
45354565 CATTTGAATG
* * *
45354575 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* *
45354615 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTGATT
* **
45354655 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
* * * ** *
45354695 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
45354735 ATATCC-GGCTAA
1 ATATCCGGGCTAA
45354747 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
39 8 0.07
40 98 0.90
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGATT
Found at i:45356815 original size:16 final size:16
Alignment explanation
Indices: 45356775--45356809 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
45356765 TAAAAGATCA
45356775 CAAAGGGAAAAATGGT
1 CAAAGGGAAAAATGGT
45356791 CAAAGGGAAAAATGGT
1 CAAAGGGAAAAATGGT
45356807 CAA
1 CAA
45356810 TTGGAAGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.09, G:0.29, T:0.11
Consensus pattern (16 bp):
CAAAGGGAAAAATGGT
Found at i:45356937 original size:11 final size:11
Alignment explanation
Indices: 45356921--45356945 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45356911 ATATAATATT
45356921 TTATTATTTTA
1 TTATTATTTTA
45356932 TTATTATTTTA
1 TTATTATTTTA
45356943 TTA
1 TTA
45356946 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:45356939 original size:19 final size:20
Alignment explanation
Indices: 45356907--45356955 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
45356897 TAATTTGATT
45356907 TTTTATATAATATTTTATTA
1 TTTTATATAATATTTTATTA
*
45356927 TTTTAT-TATTATTTTATTA
1 TTTTATATAATATTTTATTA
* *
45356946 GTATATATAA
1 TTTTATATAA
45356956 AGAAAGAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTATATAATATTTTATTA
Found at i:45365565 original size:19 final size:21
Alignment explanation
Indices: 45365541--45365579 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45365531 TGTGGCAAAG
45365541 ACAT-GGAGT-TGAGGAGGCT
1 ACATGGGAGTCTGAGGAGGCT
45365560 ACATGGGAGTCTGAGGAGGC
1 ACATGGGAGTCTGAGGAGGC
45365580 AATGAGAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 5 0.28
21 9 0.50
ACGTcount: A:0.26, C:0.13, G:0.44, T:0.18
Consensus pattern (21 bp):
ACATGGGAGTCTGAGGAGGCT
Found at i:45370304 original size:37 final size:37
Alignment explanation
Indices: 45370254--45370344 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
45370244 TTATTACGAA
45370254 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
45370291 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
45370328 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
45370345 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:45370443 original size:48 final size:48
Alignment explanation
Indices: 45370384--45370583 Score: 373
Period size: 48 Copynumber: 4.2 Consensus size: 48
45370374 TGTTACAACA
*
45370384 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45370432 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
45370480 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
45370528 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45370576 TTCACATT
1 TTCACATT
45370584 CATCACATCG
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:45370630 original size:18 final size:18
Alignment explanation
Indices: 45370599--45370634 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45370589 CATCGGCCAT
*
45370599 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
45370617 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
45370635 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:45370717 original size:122 final size:123
Alignment explanation
Indices: 45370496--45370740 Score: 474
Period size: 122 Copynumber: 2.0 Consensus size: 123
45370486 TTAGCCCTTC
45370496 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
45370561 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
45370619 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGG-TTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
45370683 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
45370741 TACACCTTCA
Statistics
Matches: 121, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
122 72 0.60
123 49 0.40
ACGTcount: A:0.32, C:0.27, G:0.09, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:45370753 original size:49 final size:49
Alignment explanation
Indices: 45370697--45370985 Score: 492
Period size: 49 Copynumber: 5.9 Consensus size: 49
45370687 CACACATATG
*
45370697 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
45370746 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
45370793 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
45370842 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
45370891 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACAC
*
45370942 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
45370986 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
47 44 0.19
49 136 0.60
51 48 0.21
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:45370753 original size:171 final size:171
Alignment explanation
Indices: 45370448--45370789 Score: 496
Period size: 171 Copynumber: 2.0 Consensus size: 171
45370438 TTAGCCATTC
*
45370448 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCCTTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
* * **
45370513 ATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTT
66 ATATCACACATATATTTCACATTAGCCATTCGGCATTACCACATATACATATCACACACATCCTT
45370578 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
131 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
45370619 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGG-TTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
* * * * * *
45370683 ATATCACACATATGTTTCACATTCATCACA-TCGGCCATTAGGC-CTTATCACATAT-ATATACA
66 ATATCACACATATATTTCACATT-AGC-CATTCGG-CATTA-CCACATAT-ACATATCACACACA
45370745 -CCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
126 TCCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
45370790 CTCTTTCACA
Statistics
Matches: 154, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
170 36 0.23
171 97 0.63
172 14 0.09
173 7 0.05
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (171 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATATTTCACATTAGCCATTCGGCATTACCACATATACATATCACACACATCCTT
CACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:45370754 original size:96 final size:98
Alignment explanation
Indices: 45370697--45370987 Score: 441
Period size: 96 Copynumber: 3.0 Consensus size: 98
45370687 CACACATATG
* *
45370697 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45370762 -TCGGCCATTAGGCCTTATCACATATATAC--TC
66 TTCGG-CATTAGGCCTTATCACATATATACAATC
*
45370793 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
45370858 TT-GGCCATTAGGCCTTATCACATATATATACA-C
66 TTCGG-CATTAGGCCTTATCACATATATACA-ATC
45370891 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATATACACTTTCACATTCATCA
*
45370956 CATT-GGCCATTAGGCCGTATCACATATATACA
64 CATTCGG-CATTAGGCCTTATCACATATATACA
45370988 TCTCATACAT
Statistics
Matches: 182, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
96 88 0.48
97 1 0.01
98 38 0.21
100 55 0.30
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (98 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTCGGCATTAGGCCTTATCACATATATACAATC
Found at i:45370866 original size:145 final size:146
Alignment explanation
Indices: 45370697--45370985 Score: 490
Period size: 145 Copynumber: 2.0 Consensus size: 146
45370687 CACACATATG
45370697 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
45370762 TCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
*
45370826 TCACATGTATATACAC
131 TCACATATATATACAC
* *
45370842 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
45370907 TTGGCCATTAGGCCTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
66 TCGGCCATTAGGCCTTATCAC--A-ATATATACACTTTCACATTCATCACATTGGCCATTAGGCC
45370972 GTATCACATATATA
128 GTATCACATATATA
45370986 CATCTCATAC
Statistics
Matches: 134, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
145 83 0.62
149 51 0.38
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTAGGCCGTA
TCACATATATATACAC
Found at i:45374808 original size:40 final size:40
Alignment explanation
Indices: 45374759--45375058 Score: 308
Period size: 40 Copynumber: 7.5 Consensus size: 40
45374749 CCAGCATGAT
* *
45374759 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45374799 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45374839 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
45374879 TGCTCTTCGGAACTTAGTCCGGAT-CATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * * *
45374918 TGCTCTTCGGAATTTAG-CCGGATATAACCACAAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATA-CATCACTAGCACGAA
** * * * * *
45374957 TTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
1 -TGCTCTTCGGAACTTAGCCCGGATACATC-ACT-AGCACGAA
** * **
45374998 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCACGAA
*
45375038 TGC-CTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
45375059 GTATCATTCA
Statistics
Matches: 231, Mismatches: 20, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
38 6 0.03
39 45 0.19
40 176 0.76
41 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45374966 original size:39 final size:40
Alignment explanation
Indices: 45374759--45374941 Score: 316
Period size: 40 Copynumber: 4.6 Consensus size: 40
45374749 CCAGCATGAT
* * *
45374759 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45374799 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45374839 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
45374879 TGCTCTTCGGAACTTAGTCCGGAT-CATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
45374918 TGCTCTTCGGAATTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
45374942 TAACCACAAG
Statistics
Matches: 138, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
38 6 0.04
39 31 0.22
40 101 0.73
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:45375000 original size:119 final size:119
Alignment explanation
Indices: 45374759--45375055 Score: 318
Period size: 119 Copynumber: 2.5 Consensus size: 119
45374749 CCAGCATGAT
*
45374759 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATA
* * * ** * *
45374824 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65 AACCACAAGCACGAATGCTCTTCGGAACTTAACCCGGATACAACACTAGCACAAA
* * *
45374879 TGCTCTTCGGAACTTAGTCCGGAT-CATCACTAGCACGAATGCTCTTCGGAATTTAGCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATA-
** * *
45374943 AACCACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAA
65 AACCACAAGCACGAA-TGCTCTTCGGAACTTAACCCGGATACAAC-ACT-AGCACAAA
* * ** *
45374998 TGC-CTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAATGC-CTTCGGGACTTAGCC
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATGCTCTTCGGAACTTAGCC
45375056 CGGGTATCAT
Statistics
Matches: 148, Mismatches: 23, Indels: 13
0.80 0.12 0.07
Matches are distributed among these distances:
118 44 0.30
119 68 0.46
120 36 0.24
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATAA
ACCACAAGCACGAATGCTCTTCGGAACTTAACCCGGATACAACACTAGCACAAA
Found at i:45377013 original size:37 final size:36
Alignment explanation
Indices: 45376963--45377051 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 36
45376953 TTATTACGAA
45376963 GTCTTACCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCGGACATAATCTCCACACGTAGTCATCGG
45376999 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTA-CCGGACATAATCTCCACACGTAGTCATCGG
*
45377036 GTCTCACCGGAACATA
1 GTCTTACCGG-ACATA
45377052 TTTCCAAGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
36 10 0.20
37 40 0.80
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (36 bp):
GTCTTACCGGACATAATCTCCACACGTAGTCATCGG
Found at i:45377150 original size:48 final size:48
Alignment explanation
Indices: 45377091--45377242 Score: 286
Period size: 48 Copynumber: 3.2 Consensus size: 48
45377081 TGTTACAACA
*
45377091 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45377139 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
45377187 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45377235 TTCACATT
1 TTCACATT
45377243 CATCACATCG
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 102 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:45377249 original size:57 final size:57
Alignment explanation
Indices: 45377188--45377447 Score: 187
Period size: 57 Copynumber: 4.5 Consensus size: 57
45377178 CACATATATT
* * *
45377188 TCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * * * * *
45377245 TCACATCGGCCATTAGGCCTTATCACATATATAGGCT-TTACCACATATACATATCACACATATG
1 TCACATCAGCCATTAGGCCTTACCACATATACA---TATCA-CACATAT--GT-T-TCACAT-T-
**
45377309 TT
56 CA
* * **
45377311 TCACATTAGCCATTCGGGTTTACCACATATACATATCACACATATGTTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* * *
45377368 TCACATCGGCCATTAGGCCTTATCACATAT--ATAT-ACAC-----CTTCACATTCA
1 TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
* *
45377417 TCACATCGGCCATTAGGCCTTATCACATATA
1 TCACATCAGCCATTAGGCCTTACCACATATA
45377448 TACTCTTTCA
Statistics
Matches: 161, Mismatches: 30, Indels: 31
0.73 0.14 0.14
Matches are distributed among these distances:
49 40 0.25
54 4 0.02
55 4 0.02
57 51 0.32
58 1 0.01
59 7 0.04
60 9 0.06
61 1 0.01
62 1 0.01
63 9 0.06
64 7 0.04
65 1 0.01
66 26 0.16
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.32
Consensus pattern (57 bp):
TCACATCAGCCATTAGGCCTTACCACATATACATATCACACATATGTTTCACATTCA
Found at i:45377289 original size:18 final size:18
Alignment explanation
Indices: 45377258--45377293 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45377248 CATCGGCCAT
*
45377258 TAGGCCTTATCACATATA
1 TAGGCCTTACCACATATA
*
45377276 TAGGCTTTACCACATATA
1 TAGGCCTTACCACATATA
45377294 CATATCACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
TAGGCCTTACCACATATA
Found at i:45377291 original size:123 final size:123
Alignment explanation
Indices: 45377155--45377400 Score: 474
Period size: 123 Copynumber: 2.0 Consensus size: 123
45377145 TTAGCCATTC
45377155 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
45377220 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* *
45377278 GGCTTTACCACATATACATATCACACATATGTTTCACATTAGCCATTCGGGTTTACCACATATAC
1 GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
45377343 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
45377401 TACACCTTCA
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 121 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (123 bp):
GGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATAC
ATATCACACATATGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:45377413 original size:49 final size:49
Alignment explanation
Indices: 45377357--45377642 Score: 497
Period size: 49 Copynumber: 5.9 Consensus size: 49
45377347 CACACATATG
*
45377357 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * *
45377406 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
45377453 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
45377502 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
45377551 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
45377600 TTTCACATTCATCACA-TGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
45377643 CATCTCATAC
Statistics
Matches: 227, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
47 44 0.19
48 26 0.11
49 157 0.69
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:45377464 original size:96 final size:95
Alignment explanation
Indices: 45377357--45377644 Score: 495
Period size: 96 Copynumber: 3.0 Consensus size: 95
45377347 CACACATATG
* *
45377357 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
45377422 TCGGCCATTAGGCCTTATCACATATATACTC
66 T-GGCCATTAGGCCTTATCACATATATACAC
*
45377453 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
45377518 TTGGCCATTAGGCCTTATCACATATATATACAC
66 -TGGCCATTAGGCCTTATCAC--ATATATACAC
45377551 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
45377616 TGGCCATTAGGCCGTATCACATATATACA
66 TGGCCATTAGGCCTTATCACATATATACA
45377645 TCTCATACAT
Statistics
Matches: 183, Mismatches: 6, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
95 9 0.05
96 81 0.44
97 20 0.11
98 73 0.40
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (95 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TGGCCATTAGGCCTTATCACATATATACAC
Found at i:45377506 original size:145 final size:145
Alignment explanation
Indices: 45377357--45377642 Score: 493
Period size: 145 Copynumber: 2.0 Consensus size: 145
45377347 CACACATATG
45377357 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
* *
45377422 TCGGCCATTAGGCCTTATCAC-ATATATACTCTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACA-TGGCCATTAGGCCGTA
*
45377486 TCACATGTATATACAC
130 TCACATATATATACAC
* *
45377502 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
45377567 TTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATGGCCATTAGGCCGTA
66 TCGGCCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATGGCCATTAGGCCGTA
45377632 TCACATATATA
130 TCACATATATA
45377643 CATCTCATAC
Statistics
Matches: 133, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
145 83 0.62
146 25 0.19
147 25 0.19
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.34
Consensus pattern (145 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATGGCCATTAGGCCGTAT
CACATATATATACAC
Found at i:45404029 original size:30 final size:30
Alignment explanation
Indices: 45403993--45404093 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
45403983 GACAAGATTG
* * *
45403993 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
45404023 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
45404051 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
45404080 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45404094 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:45404105 original size:29 final size:28
Alignment explanation
Indices: 45404022--45404097 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
45404012 AAAATTGTAC
* *
45404022 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
45404050 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
45404079 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
45404098 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:45411593 original size:40 final size:40
Alignment explanation
Indices: 45411536--45411720 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
45411526 ATTAAATGAT
* * *
45411536 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTAGTTAA
* * * *
45411576 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGT-GACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTAG-TTAA
** *
45411616 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTAGTTAA
* * * **
45411656 ATCTGGGCTAATACCCGAAGGCATTTGTGCAAGTCA-TTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-AGTTAA
45411696 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
45411721 CGTGCATGTG
Statistics
Matches: 123, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTAGTTAA
Found at i:45411672 original size:80 final size:80
Alignment explanation
Indices: 45411536--45411741 Score: 241
Period size: 80 Copynumber: 2.6 Consensus size: 80
45411526 ATTAAATGAT
* * ** * *
45411536 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAAT
* *
45411601 TATGCTAGTGACTAA
66 TATGCAAGTCACTAA
* * * *
45411616 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCTGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAAT
* * **
45411681 TGTGCAAGTCATTCT
66 TATGCAAGTCACTAA
* * *
45411696 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
45411742 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAAT
TATGCAAGTCACTAA
Found at i:45411739 original size:40 final size:40
Alignment explanation
Indices: 45411536--45411741 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
45411526 ATTAAATGAT
* * ** *
45411536 ATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTTAA
* * **
45411576 ATCCGGGTTAAGACCCGAAGGCAATT-ATGC-TAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGGTTAA
* *
45411616 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAA
* * * * ** **
45411656 ATCTGGGCTAATACCCGAAGGCATTTGTGCAAGTCATTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAA
*
45411696 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAA
45411736 ATCCGG
1 ATCCGG
45411742 TTGTATTCCG
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAA
Found at i:45418856 original size:37 final size:37
Alignment explanation
Indices: 45418803--45418924 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
45418793 TTATTACGAA
*
45418803 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
45418840 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
45418877 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
45418914 GTCTCACCCGG
1 GTCTTACCCGG
45418925 AACATATTCC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.21, C:0.34, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:45419081 original size:49 final size:49
Alignment explanation
Indices: 45419026--45419341 Score: 514
Period size: 49 Copynumber: 6.5 Consensus size: 49
45419016 TTTTACATTA
45419026 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
45419075 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
45419124 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
45419173 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
45419220 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
** * * *
45419269 GCCATTAGGCCTTATCAC--ACGTATGCACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
45419316 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
45419342 GTATATCATA
Statistics
Matches: 251, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 86 0.34
49 165 0.66
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
Found at i:45419226 original size:96 final size:96
Alignment explanation
Indices: 45419026--45419334 Score: 537
Period size: 96 Copynumber: 3.2 Consensus size: 96
45419016 TTTTACATTA
*
45419026 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
45419091 ACATATACATACACTTTCACATTCACCACATCG
66 ACATAT--ATACACTTTCACATTCACCACATCG
45419124 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
45419189 ACATATATACACTTTCACATTCACCACATCG
66 ACATATATACACTTTCACATTCACCACATCG
45419220 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
** * * *
45419285 ACACGTATGCACTTTCACATTCATCACATTG
66 ACATATATACACTTTCACATTCACCACATCG
*
45419316 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
45419335 CATATATGTA
Statistics
Matches: 204, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 134 0.66
98 70 0.34
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (96 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCACCACATCG
Found at i:45419341 original size:145 final size:146
Alignment explanation
Indices: 45419020--45419341 Score: 542
Period size: 145 Copynumber: 2.2 Consensus size: 146
45419010 CATATATTTT
* *
45419020 ACATTAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
*
45419085 CTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACAT
66 CTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACATA-AT
45419150 ACACTTTCACATTCACC
130 ACACTTTCACATTCACC
*
45419167 ACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
* *
45419230 CTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACGT-ATG
66 CTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACATAATA
*
45419294 CACTTTCACATTCATC
131 CACTTTCACATTCACC
*
45419310 ACATTGGCCATTCGGCCTTATCACACATATAT
1 ACATTGGCCATTAGGCCTTATCACACATATAT
45419342 GTATATCATA
Statistics
Matches: 164, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
143 36 0.22
145 109 0.66
147 19 0.12
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (146 bp):
ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
CTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACACATAATA
CACTTTCACATTCACC
Found at i:45423801 original size:40 final size:39
Alignment explanation
Indices: 45423743--45423927 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
45423733 ATTAAATGAT
* * *
45423743 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * * *
45423783 ATCCGGGTTAAGATCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
45423823 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
45423863 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
45423903 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
45423928 CGTGCATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:45423881 original size:80 final size:80
Alignment explanation
Indices: 45423742--45423948 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
45423732 AATTAAATGA
* * ** * * *
45423742 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGATCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
45423807 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
45423820 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
45423885 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
45423902 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
45423949 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:45423933 original size:40 final size:40
Alignment explanation
Indices: 45423741--45423948 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
45423731 CAATTAAATG
* * ** * *
45423741 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * * *
45423781 AAATCCGGGTTAAGATCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
45423821 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
45423861 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
45423901 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
45423941 ATATCCGG
1 ATATCCGG
45423949 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 135 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:45426503 original size:2 final size:2
Alignment explanation
Indices: 45426496--45426530 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
45426486 GAGACTAGTC
45426496 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45426531 CATGTCATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:45432711 original size:20 final size:20
Alignment explanation
Indices: 45432678--45432726 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
45432668 ATCGCCTAGC
* * *
45432678 GATATGATTTGCAACTGGTT
1 GATATAATTCGCAACTGGTG
45432698 GATATAATTCGCAACTGGTG
1 GATATAATTCGCAACTGGTG
*
45432718 GATACAATT
1 GATATAATT
45432727 GACGACTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (20 bp):
GATATAATTCGCAACTGGTG
Found at i:45441699 original size:34 final size:34
Alignment explanation
Indices: 45441656--45441724 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
45441646 TCAACTAGCA
* *
45441656 ATAGAGTAGATTAATTGTTTAGGTGTCTAGTGTG
1 ATAGAGTAGATTAATTGTTTACGTGTCCAGTGTG
*
45441690 ATAGAGTAGATTAGTTGTTTACGTGTCCAGTGTG
1 ATAGAGTAGATTAATTGTTTACGTGTCCAGTGTG
45441724 A
1 A
45441725 CCTTCACAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.26, C:0.06, G:0.29, T:0.39
Consensus pattern (34 bp):
ATAGAGTAGATTAATTGTTTACGTGTCCAGTGTG
Found at i:45442192 original size:26 final size:26
Alignment explanation
Indices: 45442154--45442206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
45442144 ATATGAAATG
*
45442154 TATGTGTTGTGAGATGCGTTATCGCA
1 TATGTGTTCTGAGATGCGTTATCGCA
45442180 TATGTGTTCTGAGATGCGTTATCGCA
1 TATGTGTTCTGAGATGCGTTATCGCA
45442206 T
1 T
45442207 CCCTGACCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (26 bp):
TATGTGTTCTGAGATGCGTTATCGCA
Found at i:45446194 original size:26 final size:26
Alignment explanation
Indices: 45446154--45446204 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
45446144 TAACCTAGTT
* *
45446154 CTCAGTTGTCTCCAAAGATCACTTTG
1 CTCAGTTATCGCCAAAGATCACTTTG
*
45446180 CTCAGTTATCGCCAAAGATTACTTT
1 CTCAGTTATCGCCAAAGATCACTTT
45446205 ATAAATAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (26 bp):
CTCAGTTATCGCCAAAGATCACTTTG
Found at i:45449961 original size:132 final size:132
Alignment explanation
Indices: 45449757--45450024 Score: 511
Period size: 132 Copynumber: 2.0 Consensus size: 132
45449747 CAAAAAAGCC
45449757 AATTAATGGATTTTATGGTTGTTTGCGTCAAGACTGATATTTCAAATTCAAAAAGTGTAGGAATG
1 AATTAATGGATTTTATGGTTGTTT-CGTCAAGACTGATATTTCAAATTCAAAAAGTGTAGGAATG
45449822 ATCAAATTGGTGAACATGAACTAAGTTTACAATTTTACGCATAGAACAATAATAATAAAATTTAA
65 ATCAAATTGGTGAACATGAACTAAGTTTACAATTTTACGCATAGAACAATAATAATAAAATTTAA
45449887 TCA
130 TCA
45449890 AATTAATGGATTTTATGGTTGTTT-GTCAAGACTGATATTTCAAAATTCAAAAAGTGTAGGAATG
1 AATTAATGGATTTTATGGTTGTTTCGTCAAGACTGATATTTC-AAATTCAAAAAGTGTAGGAATG
45449954 ATCAAATTGGTGAACATGAACTAAGTTTACAATTTTACGCATAGAACAATAATAATAAAATTTAA
65 ATCAAATTGGTGAACATGAACTAAGTTTACAATTTTACGCATAGAACAATAATAATAAAATTTAA
45450019 TCA
130 TCA
45450022 AAT
1 AAT
45450025 GAATTTAATT
Statistics
Matches: 134, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
131 17 0.13
132 93 0.69
133 24 0.18
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.34
Consensus pattern (132 bp):
AATTAATGGATTTTATGGTTGTTTCGTCAAGACTGATATTTCAAATTCAAAAAGTGTAGGAATGA
TCAAATTGGTGAACATGAACTAAGTTTACAATTTTACGCATAGAACAATAATAATAAAATTTAAT
CA
Found at i:45450114 original size:29 final size:30
Alignment explanation
Indices: 45450056--45450115 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
45450046 GATTAGGATT
*
45450056 ACATTAAAGTTTGAAATTACAAGGACTAAA
1 ACATTAAAGTTTGAAAGTACAAGGACTAAA
* *
45450086 ACATT-AA-TTTGAAAAGTACAGGGATTAAA
1 ACATTAAAGTTTG-AAAGTACAAGGACTAAA
45450115 A
1 A
45450116 TTTACCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 17 0.65
30 5 0.19
ACGTcount: A:0.50, C:0.08, G:0.15, T:0.27
Consensus pattern (30 bp):
ACATTAAAGTTTGAAAGTACAAGGACTAAA
Found at i:45454646 original size:3 final size:3
Alignment explanation
Indices: 45454638--45454699 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
45454628 GAGGGAACAT
45454638 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
45454686 AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AA
45454700 TAGTGGTCGC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:45458340 original size:44 final size:42
Alignment explanation
Indices: 45458267--45458361 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 42
45458257 TGTGTTTTCA
* * * * *
45458267 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTCTGTTTTATG
1 TGTAAGACCACGTCTAGGACATCGACATCGTA--TCTGATTT-TG
*
45458311 TGTAAGACCATGTCTAGGACATCGACATCGTATCTGATTTTG
1 TGTAAGACCACGTCTAGGACATCGACATCGTATCTGATTTTG
45458353 TGTAAGACC
1 TGTAAGACC
45458362 CTATCTGGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 11 0.25
43 7 0.16
44 25 0.57
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTAGGACATCGACATCGTATCTGATTTTG
Found at i:45463535 original size:26 final size:26
Alignment explanation
Indices: 45463505--45463560 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
45463495 TAATTATTGA
45463505 ACTTGAAACGATTTTTTTATTTCTTT
1 ACTTGAAACGATTTTTTTATTTCTTT
45463531 ACTTGAAACGATTTTTTTATTTCTTT
1 ACTTGAAACGATTTTTTTATTTCTTT
45463557 ACTT
1 ACTT
45463561 TATATTAGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.57
Consensus pattern (26 bp):
ACTTGAAACGATTTTTTTATTTCTTT
Found at i:45466227 original size:24 final size:24
Alignment explanation
Indices: 45466200--45466262 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
45466190 CTTATTATGT
45466200 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45466224 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
45466248 TCGCACACATAGTGC
1 TCGCACACATAGTGC
45466263 ATTTGAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:45473488 original size:30 final size:30
Alignment explanation
Indices: 45473433--45473563 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
45473423 ATAGTGAATC
*
45473433 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
45473462 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
45473492 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
45473520 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
45473550 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45473564 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:45473543 original size:58 final size:58
Alignment explanation
Indices: 45473432--45473563 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
45473422 TATAGTGAAT
* * * * *
45473432 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
45473491 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
45473549 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
45473564 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:45476337 original size:24 final size:23
Alignment explanation
Indices: 45476305--45476413 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
45476295 ACCAAACGTT
* **
45476305 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
45476329 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
45476353 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
45476377 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
45476401 GCACACATAGTGC
1 GCACACATAGTGC
45476414 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:45476379 original size:48 final size:48
Alignment explanation
Indices: 45476305--45476413 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
45476295 ACCAAACGTT
* **
45476305 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
45476353 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
45476401 GCACACATAGTGC
1 GCACACATAGTGC
45476414 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:45480070 original size:17 final size:17
Alignment explanation
Indices: 45480048--45480081 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
45480038 AATCCATGTT
45480048 CAACTTCTCGTAATTAC
1 CAACTTCTCGTAATTAC
45480065 CAACTTCTCGTAATTAC
1 CAACTTCTCGTAATTAC
45480082 AATGAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.35
Consensus pattern (17 bp):
CAACTTCTCGTAATTAC
Found at i:45481018 original size:29 final size:29
Alignment explanation
Indices: 45480986--45481066 Score: 117
Period size: 29 Copynumber: 2.8 Consensus size: 29
45480976 AATTTCACAT
*
45480986 ACCTGTATCTGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
*
45481015 ACCTGTATATAGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
* * *
45481044 ACATTTATATGGCCCGTTAGGCC
1 ACCTGTATATGGCCCATTAGGCC
45481067 TAGTCACATT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:45481161 original size:17 final size:18
Alignment explanation
Indices: 45481139--45481184 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
45481129 TGCCTATTAT
45481139 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
45481156 GGGCCCATTTAGCCCATTC
1 GGGCCCATATAGCCCA-TC
*
45481175 TGGCCCATAT
1 GGGCCCATAT
45481185 GGCCAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 7 0.29
18 7 0.29
19 10 0.42
ACGTcount: A:0.20, C:0.37, G:0.22, T:0.22
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:45481334 original size:16 final size:16
Alignment explanation
Indices: 45481292--45481350 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
45481282 GTAGCCAAAC
* *
45481292 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
*** *
45481308 TTTCAATTTTTCGGTA
1 TTTCGGCTTTTCGGCA
45481324 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
45481340 TTTCGGCTTTT
1 TTTCGGCTTTT
45481351 GCTGATACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:45482315 original size:2 final size:2
Alignment explanation
Indices: 45482308--45482339 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
45482298 TATTGGCCGA
45482308 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45482340 GAATACACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45482832 original size:80 final size:80
Alignment explanation
Indices: 45482731--45482884 Score: 290
Period size: 80 Copynumber: 1.9 Consensus size: 80
45482721 ATACTAGCTC
45482731 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGG
1 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGG
45482796 ATAACATTCTAGCAT
66 ATAACATTCTAGCAT
* *
45482811 ATAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGG
1 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGG
45482876 ATAACATTC
66 ATAACATTC
45482885 CTCAAGTATC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (80 bp):
ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGGACTTTAAGCCCGG
ATAACATTCTAGCAT
Found at i:45482885 original size:40 final size:40
Alignment explanation
Indices: 45482733--45482878 Score: 224
Period size: 40 Copynumber: 3.6 Consensus size: 40
45482723 ACTAGCTCAT
45482733 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
* * *
45482773 AGCCTGCGGGACTTTAAGCCCGGATA-ACATTCTAGCA-TA
1 AGCCTGCGGGTCTTTAAGCCCGGATACA-ATTCCAGCACGA
*
45482812 TAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
1 -AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
45482853 AGCCTGCGGGTCTTTAAGCCCGGATA
1 AGCCTGCGGGTCTTTAAGCCCGGATA
45482879 ACATTCCTCA
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
39 2 0.02
40 90 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:45487988 original size:30 final size:29
Alignment explanation
Indices: 45487925--45488027 Score: 122
Period size: 29 Copynumber: 3.5 Consensus size: 29
45487915 AATCGATCAC
* *
45487925 GCACACTTAGTGCCAT-GTGATTT-AAGCTC
1 GCACACTTAGTGCCATACT--TTTCAAGCTT
*
45487954 GCACACATAGTGCCGTATA-TTTTCAAGCTT
1 GCACACTTAGTGCC--ATACTTTTCAAGCTT
45487984 GCACACTTAGTGCCATACTTTTCAAGCTT
1 GCACACTTAGTGCCATACTTTTCAAGCTT
45488013 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
45488028 ATCTTGTCAC
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
28 3 0.05
29 42 0.64
30 18 0.27
31 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (29 bp):
GCACACTTAGTGCCATACTTTTCAAGCTT
Found at i:45495879 original size:29 final size:29
Alignment explanation
Indices: 45495845--45495976 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
45495835 TAATCGATCA
*
45495845 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
45495874 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
45495903 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
45495932 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
45495961 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45495977 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:45501472 original size:40 final size:40
Alignment explanation
Indices: 45501427--45501593 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
45501417 CGGAATATAA
*
45501427 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45501467 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
45501507 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
45501547 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
45501586 CCGGATAT
1 CCGGATAT
45501594 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45509470 original size:40 final size:40
Alignment explanation
Indices: 45509425--45509591 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
45509415 CGGAATATAA
*
45509425 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
45509465 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
45509505 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
45509545 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
45509584 CCGGATAT
1 CCGGATAT
45509592 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.86
41 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:45513222 original size:38 final size:38
Alignment explanation
Indices: 45513171--45513256 Score: 127
Period size: 38 Copynumber: 2.3 Consensus size: 38
45513161 ATATTTGATG
* * *
45513171 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTACTGGTAT
*
45513209 TATATCTGGGTTAAATCCCGCAGGCCTAGTACTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTAGTACTGGTAT
*
45513247 TATATTCGGG
1 TATATCCGGG
45513257 CCTTTGAGCC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCCTAGTACTGGTAT
Found at i:45513289 original size:25 final size:25
Alignment explanation
Indices: 45513261--45513334 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 25
45513251 TTCGGGCCTT
45513261 TGAGCCTAGCAGGCTATTATGCCGG
1 TGAGCCTAGCAGGCTATTATGCCGG
** **
45513286 TGAG---A-CA--CTATTCGGGCCTT
1 TGAGCCTAGCAGGCTATT-ATGCCGG
45513306 TGAGCCTAGCAGGCTATTATGCCGG
1 TGAGCCTAGCAGGCTATTATGCCGG
45513331 TGAG
1 TGAG
45513335 ACACTATTCG
Statistics
Matches: 34, Mismatches: 8, Indels: 14
0.61 0.14 0.25
Matches are distributed among these distances:
19 5 0.15
20 7 0.21
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 11 0.32
26 5 0.15
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (25 bp):
TGAGCCTAGCAGGCTATTATGCCGG
Found at i:45513299 original size:45 final size:45
Alignment explanation
Indices: 45513249--45513556 Score: 426
Period size: 45 Copynumber: 6.9 Consensus size: 45
45513239 ACTGGTATTA
*
45513249 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
45513294 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
45513339 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
45513384 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
45513429 TATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
45513474 TATTCGGG-CTTTCAAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA-CAC
* * *
45513519 TAATCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
45513557 TTTGAGAAAA
Statistics
Matches: 242, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
43 12 0.05
44 16 0.07
45 212 0.88
46 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:45530826 original size:24 final size:24
Alignment explanation
Indices: 45530794--45530857 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
45530784 AAGGCTATGC
**
45530794 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACAT
** *
45530818 GGCACTATGTGTGAAAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACAT
45530842 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
45530858 ATAAGTAAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACAT
Found at i:45537005 original size:29 final size:29
Alignment explanation
Indices: 45536972--45537045 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
45536962 CCTTCGAGCT
45536972 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
45537001 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45537030 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45537046 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45537006 original size:58 final size:58
Alignment explanation
Indices: 45536913--45537045 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
45536903 ATACTCGATT
* * * * *
45536913 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
45536971 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
45537029 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
45537046 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:45544889 original size:29 final size:29
Alignment explanation
Indices: 45544856--45544929 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
45544846 CCTTCGAGCT
45544856 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
45544885 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45544914 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45544930 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45544890 original size:58 final size:58
Alignment explanation
Indices: 45544797--45544929 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
45544787 ATACTCGATT
* * * * *
45544797 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
45544855 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
45544913 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
45544930 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:45548673 original size:28 final size:28
Alignment explanation
Indices: 45548608--45548708 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45548598 ATAGTGAATC
*
45548608 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
45548637 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45548665 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45548695 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45548709 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45556604 original size:28 final size:28
Alignment explanation
Indices: 45556539--45556639 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45556529 ATAGTGAATC
*
45556539 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
45556568 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45556596 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45556626 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45556640 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45564547 original size:28 final size:28
Alignment explanation
Indices: 45564482--45564582 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
45564472 ATAGTGAATC
*
45564482 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
45564511 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45564539 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45564569 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45564583 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45573134 original size:30 final size:30
Alignment explanation
Indices: 45573090--45573178 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
45573080 CAAAGATAAC
45573090 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
45573119 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
45573149 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
45573179 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:45573138 original size:15 final size:15
Alignment explanation
Indices: 45573090--45573169 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
45573080 CAAAGATAAC
*
45573090 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45573104 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
45573119 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
45573134 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
45573149 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
45573164 AAGAAA
1 AAGAAA
45573170 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45573178 original size:15 final size:15
Alignment explanation
Indices: 45573101--45573178 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
45573091 AGAAAACCGA
45573101 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
45573116 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
45573130 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
45573145 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
45573161 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
45573176 ATA
1 ATA
45573179 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45587160 original size:33 final size:33
Alignment explanation
Indices: 45587114--45587179 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
45587104 TTCCCTTTTG
** *
45587114 AGTCAATCTGGATTACTAGTCCAGGCTAAATCC
1 AGTCAATAAGGATTACCAGTCCAGGCTAAATCC
45587147 AGTCAATAAGGATTACCAGTCCAGGCTAAATCC
1 AGTCAATAAGGATTACCAGTCCAGGCTAAATCC
45587180 CAATTGAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.24
Consensus pattern (33 bp):
AGTCAATAAGGATTACCAGTCCAGGCTAAATCC
Found at i:45595347 original size:49 final size:51
Alignment explanation
Indices: 45595286--45595525 Score: 217
Period size: 49 Copynumber: 4.8 Consensus size: 51
45595276 AAGGCTATCT
* *
45595286 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGAGACC-AATTATTC-
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGAGACCGAATTATTCG
* * * * * *** *
45595335 GGTACACGTAGTAGCCTACACTTAGTACTAAACACGTGACCTAA-CCGTCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGAGACCGAATTATTCG
* * *
45595385 GATACACATAATAGCCTGCACTTAGTACTACACACGTG-CTCGAAGTTA-TCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGAGAC-CGAA-TTATTCG
* * * *
45595436 GGTACGCATAGTAGCCTGCACTTAGTACTACACA-TACGACC-AAGTA-TCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGA-GACCGAATTATTCG
* *
45595485 GGTACACATAGTAGCCTGCAATTAGTACTACACACGTGACC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGAGACC
45595526 TCACAATAGA
Statistics
Matches: 154, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
49 78 0.51
50 40 0.26
51 35 0.23
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (51 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGAGACCGAATTATTCG
Found at i:45597713 original size:68 final size:68
Alignment explanation
Indices: 45597529--45597721 Score: 168
Period size: 68 Copynumber: 2.9 Consensus size: 68
45597519 CAGTTTATCT
* * * * * *
45597529 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACCTGGAACCACAC-ATGCGACCAAGCTACAT-AT
1 CGTAGCTCTCTTGTCTACATGATG---TGCACATAGCACCA-ACTATGCGACCTAGCTACATCAT
45597592 -A--TCC
62 AATGTCC
* * * *
45597596 CGTAGCTCTCTTGTCTACATGGTGTGCACATAGTATCACCTATGCGACCTAGCTACATCATAATG
1 CGTAGCTCTCTTGTCTACATGATGTGCACATAGCACCAACTATGCGACCTAGCTACATCATAATG
45597661 TCC
66 TCC
*
45597664 CGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATAC-ATGTGACCTAGCTACAT
1 CGTAGCTCTCTTGT-CTACATGATGTGCACAT-AGCACCA-ACTATGCGACCTAGCTACAT
45597722 ATCATCTGTA
Statistics
Matches: 106, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
63 1 0.01
64 25 0.24
65 2 0.02
66 1 0.01
67 25 0.24
68 50 0.47
69 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGATGTGCACATAGCACCAACTATGCGACCTAGCTACATCATAATG
TCC
Found at i:45602981 original size:49 final size:49
Alignment explanation
Indices: 45602860--45603113 Score: 431
Period size: 49 Copynumber: 5.2 Consensus size: 49
45602850 GTATGAGATG
*
45602860 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TA
45602911 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
45602960 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
45603009 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
45603056 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
45603105 TATATATGT
1 TATATATGT
45603114 TGTAACACCC
Statistics
Matches: 194, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
47 43 0.22
49 105 0.54
51 46 0.24
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:45603036 original size:98 final size:96
Alignment explanation
Indices: 45602859--45603113 Score: 429
Period size: 96 Copynumber: 2.6 Consensus size: 96
45602849 TGTATGAGAT
*
45602859 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATATGTGATA
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATATGTGATA
*
45602924 AGGCCTAATGGCCAATGTGATGAATGTGAAAGT
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
*
45602957 GTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATA
45603022 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
64 AGGCCTAATGGCCAATGTGATGAATGTGAAAGA
* *
45603055 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATATATATGT
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGT
45603114 TGTAACACCC
Statistics
Matches: 149, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
96 55 0.37
98 48 0.32
100 46 0.31
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.31
Consensus pattern (96 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGA
Found at i:45604511 original size:71 final size:71
Alignment explanation
Indices: 45604425--45604588 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
45604415 CGATTTGTCT
45604425 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
45604490 CTTTCA
66 CTTTCA
45604496 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
45604561 CTTTCA
66 CTTTCA
45604567 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
45604589 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:45604626 original size:71 final size:70
Alignment explanation
Indices: 45604425--45604622 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
45604415 CGATTTGTCT
* * * *
45604425 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
45604490 CTTTCA
65 CTTTCA
* * * *
45604496 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
45604561 CTTTCA
65 CTTTCA
* *
45604567 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
45604623 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:45610412 original size:38 final size:38
Alignment explanation
Indices: 45610280--45610428 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
45610270 AATTGAATGA
* * * * *
45610280 TATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
45610320 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
45610358 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
45610398 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45610429 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 5 0.05
40 56 0.62
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:45610443 original size:78 final size:79
Alignment explanation
Indices: 45610279--45610444 Score: 194
Period size: 78 Copynumber: 2.1 Consensus size: 79
45610269 AAATTGAATG
* *
45610279 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
45610344 ATTGTGCTAGTGGCT
65 ATTGTGCTAGTGACT
* * * * *
45610359 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
45610422 TTTGTGC-ACGTGATT
65 ATTGTGCTA-GTGACT
45610437 ATATCCGG
1 ATATCCGG
45610445 TTATATTCCG
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 3 0.04
80 24 0.33
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGACT
Found at i:45618334 original size:40 final size:39
Alignment explanation
Indices: 45618268--45618432 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
45618258 AAATTGAATG
* *
45618268 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
45618307 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
45618347 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
45618385 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
45618425 ATATCCGG
1 ATATCCGG
45618433 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:45618400 original size:38 final size:38
Alignment explanation
Indices: 45618269--45618416 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
45618259 AATTGAATGA
* * * *
45618269 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
45618308 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
45618346 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
45618386 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45618417 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:45618431 original size:78 final size:78
Alignment explanation
Indices: 45618268--45618432 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
45618258 AAATTGAATG
*
45618268 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
45618333 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
45618347 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
45618410 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
45618425 ATATCCGG
1 ATATCCGG
45618433 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:45624676 original size:18 final size:18
Alignment explanation
Indices: 45624653--45624688 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45624643 GTGTGATATG
*
45624653 TATATGTGGTAAAGCCTA
1 TATATGTGATAAAGCCTA
*
45624671 TATATGTGATAAGGCCTA
1 TATATGTGATAAAGCCTA
45624689 ATGGCCGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (18 bp):
TATATGTGATAAAGCCTA
Found at i:45624692 original size:66 final size:69
Alignment explanation
Indices: 45624605--45624743 Score: 176
Period size: 75 Copynumber: 2.0 Consensus size: 69
45624595 GTGTGATATG
*
45624605 TATATGTGGTAAAGCCGAATGG-C-T-AATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
1 TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
45624667 CCTA
66 CCTA
* *
45624671 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTG
1 TATATGTGATAAAGCCGAATGGCC-----G-TGAATGTGAAACATATGTGTGATATGTATATGTG
45624736 GTAAAGCC
60 GTAAAGCC
45624744 GAATGGCTAA
Statistics
Matches: 61, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
66 19 0.31
67 1 0.02
74 1 0.02
75 40 0.66
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (69 bp):
TATATGTGATAAAGCCGAATGGCCGTGAATGTGAAACATATGTGTGATATGTATATGTGGTAAAG
CCTA
Found at i:45624758 original size:48 final size:48
Alignment explanation
Indices: 45624704--45624903 Score: 355
Period size: 48 Copynumber: 4.2 Consensus size: 48
45624694 CGATGTGATG
*
45624704 AATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
45624752 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* *
45624800 AATGTGGAATATATGTGTGATATGTATATGTAGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
45624848 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
45624896 AATGTGAA
1 AATGTGAA
45624904 TGTTGTAACA
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 144 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:45624768 original size:123 final size:123
Alignment explanation
Indices: 45624549--45624791 Score: 468
Period size: 123 Copynumber: 2.0 Consensus size: 123
45624539 GGGTTGTCAC
*
45624549 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATATATGTGTGATATGTATATGTGG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGG
45624614 TAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCTAT
66 TAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCTAT
45624672 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGG
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGG
*
45624737 TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCC
66 TAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCC
45624792 GAAGGGCTAA
Statistics
Matches: 118, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 118 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (123 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACATATGTGTGATATGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAACATATGTGTGATATGTATATGTGGTAAAGCCTAT
Found at i:45624994 original size:37 final size:37
Alignment explanation
Indices: 45624943--45625033 Score: 173
Period size: 37 Copynumber: 2.4 Consensus size: 37
45624933 AACTTGGAAA
45624943 TATGTTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
45624981 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
45625018 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
45625034 TTCGTAATAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
37 49 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:45627476 original size:15 final size:15
Alignment explanation
Indices: 45627431--45627482 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
45627421 AAAACCGAGT
*
45627431 TAAA-AAATCCAAGA
1 TAAAGAAATCCAAAA
* * *
45627445 TAGAGAAACCCAGAA
1 TAAAGAAATCCAAAA
45627460 TAAAGAAATCCAAAA
1 TAAAGAAATCCAAAA
45627475 TAAAGAAA
1 TAAAGAAA
45627483 CCTAAGATAT
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
14 3 0.10
15 27 0.90
ACGTcount: A:0.63, C:0.13, G:0.12, T:0.12
Consensus pattern (15 bp):
TAAAGAAATCCAAAA
Found at i:45627639 original size:2 final size:2
Alignment explanation
Indices: 45627632--45627658 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45627622 TGTATCTTCC
45627632 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
45627659 CAAATGGAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45630699 original size:49 final size:49
Alignment explanation
Indices: 45630638--45630862 Score: 254
Period size: 49 Copynumber: 4.6 Consensus size: 49
45630628 ATGGTATGCA
* *
45630638 TAGTAGCCTGCACTTAGTACTACATATGCCACCAATTATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
* * * * * *
45630687 TAGTAGCATGCACTTAGTACTACACATGTGACCTAACTGT-TGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCGGGTACACG
* * * * ** *
45630736 TAGTCGCCTGAACTTAGTACTACACATGTGATCAAAGTTATCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGGGTACACG
* *
45630787 TAGTAGCCTGCACTTAGTACTACACATGCGACCAAGTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
*
45630836 TAGTAGCCTGCACTTTGTACTACACAT
1 TAGTAGCCTGCACTTAGTACTACACAT
45630863 AAGACCTCAC
Statistics
Matches: 143, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
49 101 0.71
50 10 0.07
51 32 0.22
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGGTACACG
Found at i:45630759 original size:26 final size:25
Alignment explanation
Indices: 45630681--45630760 Score: 60
Period size: 24 Copynumber: 3.2 Consensus size: 25
45630671 AATTATCGGG
* *
45630681 TACACGTAGTAGCATGCACTTAGTAC
1 TACACGTAGT-GCCTGAACTTAGTAC
* *
45630707 TACACAT-GTGACCT-AACTGTTG-A-
1 TACACGTAGTG-CCTGAACT-TAGTAC
45630730 TACACGTAGTCGCCTGAACTTAGTAC
1 TACACGTAGT-GCCTGAACTTAGTAC
45630756 TACAC
1 TACAC
45630761 ATGTGATCAA
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
23 6 0.15
24 12 0.29
25 12 0.29
26 11 0.27
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (25 bp):
TACACGTAGTGCCTGAACTTAGTAC
Found at i:45630792 original size:100 final size:98
Alignment explanation
Indices: 45630638--45630862 Score: 272
Period size: 100 Copynumber: 2.3 Consensus size: 98
45630628 ATGGTATGCA
* * *
45630638 TAGTAGCCTGCACTTAGTACTACATATGCCACCAATTATCGGGTACACGTAGTAGCATGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCCACAAATTATCGGGTACACATAGTAGCATGCACTTA
* * *
45630703 GTACTACACATGTGACCTAACTGT-TGATACACG
66 GTACTACACATGCGACC-AACTATCCGATACACG
* * ** ** *
45630736 TAGTCGCCTGAACTTAGTACTACACATGTGATCAAAGTTATCGGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACATGCCA-CAAA-TTATCGGGTACACATAGTAGCATGCACT
* *
45630801 TAGTACTACACATGCGACCAAGTATCCGGTACACG
64 TAGTACTACACATGCGACCAACTATCCGATACACG
*
45630836 TAGTAGCCTGCACTTTGTACTACACAT
1 TAGTAGCCTGCACTTAGTACTACACAT
45630863 AAGACCTCAC
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
98 26 0.25
99 7 0.07
100 73 0.69
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACATGCCACAAATTATCGGGTACACATAGTAGCATGCACTTA
GTACTACACATGCGACCAACTATCCGATACACG
Done.