Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 149 of 318
Found at i:45631153 original size:27 final size:27
Alignment explanation
Indices: 45631123--45631174 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
45631113 ATACAACCCT
*
45631123 TGTAATAGTAATTTAACATTCAATTCA
1 TGTAATAATAATTTAACATTCAATTCA
**
45631150 TGTAATAATAATTTGCCATTCAATT
1 TGTAATAATAATTTAACATTCAATT
45631175 TCACATAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (27 bp):
TGTAATAATAATTTAACATTCAATTCA
Found at i:45647120 original size:50 final size:50
Alignment explanation
Indices: 45647045--45647312 Score: 249
Period size: 50 Copynumber: 5.6 Consensus size: 50
45647035 TTAAGTTGCC
* * *
45647045 GATGCAATGTCCCAGACATGGTCTTACACTAGCTCTCGTATTTATGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACGTGCT
*
45647095 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGTACTTACGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACGTGCT
* * * *
45647145 GATGCCATGTCCCAGACATGGTCTTGCACTAAC-AT-GT-C-T-CGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACGT-GCT
* * * * *
45647191 GATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACGT-CTCAAG-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGTACTTACGTGCT
* * * * *
45647237 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACTTGT-CTCA-ATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACGTGCT
*
45647283 GTTGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
45647313 GGCACACAAA
Statistics
Matches: 188, Mismatches: 20, Indels: 22
0.82 0.09 0.10
Matches are distributed among these distances:
44 11 0.06
45 16 0.09
46 54 0.29
47 16 0.09
48 13 0.07
49 1 0.01
50 77 0.41
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTACTTACGTGCT
Found at i:45648048 original size:12 final size:12
Alignment explanation
Indices: 45648031--45648055 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45648021 CAAAAATGTA
45648031 AAAATCATCAAG
1 AAAATCATCAAG
45648043 AAAATCATCAAG
1 AAAATCATCAAG
45648055 A
1 A
45648056 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:45654718 original size:46 final size:44
Alignment explanation
Indices: 45654578--45654798 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 44
45654568 GGTTAAGTTT
* *
45654578 TCGATGCAATGTCCCAGACATGGTCTTACACT-AGCTC-TCATACTGATG
1 TCGATGC-ATGTCCCAGACAT-GTCTTACACTGA-CACGTC-T-C-GAGG
* *
45654626 TGCTGATGCCATGTCCCAGACATGGTCTTACCCTGACATGTCTCGAGG
1 T-C-GATG-CATGTCCCAGACAT-GTCTTACACTGACACGTCTCGAGG
* *
45654674 TCGATGCATGTCCTAGACATGTCTTACACTGGCTAACGTCTCGAGG
1 TCGATGCATGTCCCAGACATGTCTTACACTGAC--ACGTCTCGAGG
* * * * *
45654720 TCGATGCATGTCCCAGACATGCCTTACATCAGCACTCGTCTCAATG
1 TCGATGCATGTCCCAGACATGTCTTACA-CTG-ACACGTCTCGAGG
45654766 -CAGATGCCATGTCCCAGACATGGTCTTACACTG
1 TC-GATG-CATGTCCCAGACAT-GTCTTACACTG
45654799 GCACACAAAT
Statistics
Matches: 144, Mismatches: 17, Indels: 25
0.77 0.09 0.13
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 52 0.36
47 19 0.13
48 13 0.09
49 2 0.01
50 29 0.20
51 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (44 bp):
TCGATGCATGTCCCAGACATGTCTTACACTGACACGTCTCGAGG
Found at i:45657043 original size:15 final size:17
Alignment explanation
Indices: 45657016--45657063 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 17
45657006 ATTTTATGTT
45657016 TTAAT-TAATTAATA-A
1 TTAATATAATTAATATA
45657031 TTAATATAA-TAATATA
1 TTAATATAATTAATATA
45657047 TT-ATATATATTAA-ATA
1 TTAATATA-ATTAATATA
45657063 T
1 T
45657064 CTTATACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
15 15 0.52
16 11 0.38
17 3 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATATAATTAATATA
Found at i:45657054 original size:9 final size:8
Alignment explanation
Indices: 45657023--45657063 Score: 50
Period size: 7 Copynumber: 5.2 Consensus size: 8
45657013 GTTTTAATTA
45657023 ATTAATA-
1 ATTAATAT
45657030 ATTAATAT
1 ATTAATAT
*
45657038 AATAATAT
1 ATTAATAT
45657046 ATTATATAT
1 ATTA-ATAT
45657055 ATTAA-AT
1 ATTAATAT
45657062 AT
1 AT
45657064 CTTATACTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 11 0.37
8 11 0.37
9 8 0.27
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (8 bp):
ATTAATAT
Found at i:45659276 original size:96 final size:96
Alignment explanation
Indices: 45659112--45659308 Score: 385
Period size: 96 Copynumber: 2.1 Consensus size: 96
45659102 ATATGCTATT
45659112 CATTCTAGAGAAGATGTTTCTACACCAGACATCATTACTGGCACATTTTCTCTACTTAATACTAA
1 CATTCTAGAGAAGATGTTTCTACACCAGACATCATTACTGGCACATTTTCTCTACTTAATACTAA
45659177 TATTACTGCTTTGATTGATCCTAGTTCCACA
66 TATTACTGCTTTGATTGATCCTAGTTCCACA
*
45659208 CATTCTAGAGAATATGTTTCTACACCAGACATCATTACTGGCACATTTTCTCTACTTAATACTAA
1 CATTCTAGAGAAGATGTTTCTACACCAGACATCATTACTGGCACATTTTCTCTACTTAATACTAA
45659273 TATTACTGCTTTGATTGATCCTAGTTCCACA
66 TATTACTGCTTTGATTGATCCTAGTTCCACA
45659304 CATTC
1 CATTC
45659309 ATACATATGC
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 100 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (96 bp):
CATTCTAGAGAAGATGTTTCTACACCAGACATCATTACTGGCACATTTTCTCTACTTAATACTAA
TATTACTGCTTTGATTGATCCTAGTTCCACA
Found at i:45661496 original size:66 final size:64
Alignment explanation
Indices: 45661370--45661496 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 64
45661360 TACTATGTGT
* * * * *
45661370 ACACCATGTAGAAAGAGAGCTAGGGATATATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGG
1 ACACCATGTAGAAAGAGAGCTAGAGATAAATG-AGCTAGGTCACATGGGTGGTACCAAGTGAAGG
* *
45661435 ACACCATGTAGACAAGATAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGA-AAGAGAGCTA-GAGATAAA-TGAGCTAGGTCACATGGGTGGTACCAAGTG
45661497 TTCACCATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
65 12 0.23
66 32 0.62
67 6 0.12
68 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (64 bp):
ACACCATGTAGAAAGAGAGCTAGAGATAAATGAGCTAGGTCACATGGGTGGTACCAAGTGAAGG
Found at i:45669793 original size:17 final size:18
Alignment explanation
Indices: 45669766--45669799 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45669756 AATTAAATAT
45669766 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
45669784 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
45669800 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:45675407 original size:45 final size:45
Alignment explanation
Indices: 45675343--45675443 Score: 175
Period size: 45 Copynumber: 2.2 Consensus size: 45
45675333 GCTCGGTGGC
*
45675343 AATGAGTTCAACCAGGCTCGAGCTCTGTCCCTCAGCAAATATGGG
1 AATGACTTCAACCAGGCTCGAGCTCTGTCCCTCAGCAAATATGGG
**
45675388 AATGACTTCAACCAGGCTCGAGCTCTGTCCCTCAGGGAATATGGG
1 AATGACTTCAACCAGGCTCGAGCTCTGTCCCTCAGCAAATATGGG
45675433 AATGACTTCAA
1 AATGACTTCAA
45675444 TCGTAATGCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.23
Consensus pattern (45 bp):
AATGACTTCAACCAGGCTCGAGCTCTGTCCCTCAGCAAATATGGG
Found at i:45680253 original size:35 final size:35
Alignment explanation
Indices: 45680206--45680310 Score: 201
Period size: 35 Copynumber: 3.0 Consensus size: 35
45680196 TAGTGAGATT
*
45680206 TTAGTTAAGCTTGGAATAAGAAGTAAATTGCACAA
1 TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
45680241 TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
1 TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
45680276 TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
1 TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
45680311 ATTTCATTTT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
35 69 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.29
Consensus pattern (35 bp):
TTAGTTAGGCTTGGAATAAGAAGTAAATTGCACAA
Found at i:45682322 original size:29 final size:29
Alignment explanation
Indices: 45682290--45682362 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
45682280 CTTCGAGCTC
*
45682290 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
45682319 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
45682348 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
45682363 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:45690272 original size:29 final size:29
Alignment explanation
Indices: 45690240--45690312 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
45690230 CTTCGAGCTC
*
45690240 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
45690269 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
45690298 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
45690313 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:45693210 original size:29 final size:29
Alignment explanation
Indices: 45693177--45693307 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
45693167 GTGACGAGAT
45693177 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45693206 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
45693234 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
45693263 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
45693292 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45693308 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45701153 original size:29 final size:29
Alignment explanation
Indices: 45701120--45701251 Score: 142
Period size: 29 Copynumber: 4.6 Consensus size: 29
45701110 GTGACGAGAT
45701120 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45701149 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
45701178 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * **
45701207 TGGCACTATGTGTGCAG-GCT-TAAATCGCA
1 TGGCACTAAGTGTGC-GTGCTGGAAAT-ATA
45701236 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45701252 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
28 3 0.03
29 84 0.95
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45701190 original size:58 final size:58
Alignment explanation
Indices: 45701120--45701252 Score: 160
Period size: 58 Copynumber: 2.3 Consensus size: 58
45701110 GTGACGAGAT
* * * * *
45701120 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * * * *
45701178 TGGCACTAAGTGTGCGAGCTCGAAGGGTATGGCACTATGTGTGCAGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCAGGCTGAAATCACA
45701236 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
45701253 AATCGAGTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 4 0.06
58 60 0.94
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGATATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:45704220 original size:17 final size:18
Alignment explanation
Indices: 45704194--45704227 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45704184 ATTTTGTTTA
45704194 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
45704211 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
45704228 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:45708016 original size:39 final size:39
Alignment explanation
Indices: 45707973--45708189 Score: 335
Period size: 39 Copynumber: 5.5 Consensus size: 39
45707963 GTGTGAGATA
* *
45707973 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
45708012 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* *
45708051 TATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
*
45708090 TATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
* * *
45708129 TATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
45708168 TATATCCGGGCTTAAAGTCCCG
1 TATATCCGGGC-T-AAGTCCCG
45708190 CATGCTTTGT
Statistics
Matches: 162, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 153 0.94
40 1 0.01
41 8 0.05
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
Found at i:45715428 original size:17 final size:18
Alignment explanation
Indices: 45715408--45715441 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45715398 ACACTTTAGT
45715408 ATAGTAA-ACTACGAATC
1 ATAGTAAGACTACGAATC
*
45715425 ATAGTAAGACTGCGAAT
1 ATAGTAAGACTACGAAT
45715442 TGTGAAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.15, G:0.18, T:0.24
Consensus pattern (18 bp):
ATAGTAAGACTACGAATC
Found at i:45718652 original size:40 final size:40
Alignment explanation
Indices: 45718608--45718773 Score: 296
Period size: 40 Copynumber: 4.2 Consensus size: 40
45718598 CCCGGATGTC
* *
45718608 ATTCCAGCACGATGCCTGCGGATCTTTAAGCCCAGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
*
45718648 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
45718688 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
*
45718728 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
45718768 ATTCCA
1 ATTCCA
45718774 CATCAAATAA
Statistics
Matches: 121, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACA
Found at i:45726766 original size:40 final size:40
Alignment explanation
Indices: 45726719--45726964 Score: 402
Period size: 40 Copynumber: 6.2 Consensus size: 40
45726709 CTCGGATGTC
* * *
45726719 ATTCCAGCACAAAGCCTGCAGATCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
45726759 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
* *
45726799 ATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGACACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
* *
45726839 ATTCCAGCATGAAGCCTGCAGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
* *
45726879 ATTCTAGTACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
*
45726919 ATTCCAGCACGAAGCTTGCGGGTCTTTAAGCCCGGATACA
1 ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
45726959 ATTCCA
1 ATTCCA
45726965 CATCAAATAA
Statistics
Matches: 192, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 192 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
ATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACA
Found at i:45729977 original size:27 final size:28
Alignment explanation
Indices: 45729921--45729990 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
45729911 AAATTTGTAC
45729921 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45729949 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45729976 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45729991 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:45737575 original size:27 final size:28
Alignment explanation
Indices: 45737519--45737588 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
45737509 AAATTTGTAC
45737519 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45737547 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
45737574 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45737589 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:45749062 original size:226 final size:226
Alignment explanation
Indices: 45748668--45749116 Score: 889
Period size: 226 Copynumber: 2.0 Consensus size: 226
45748658 AACTAAGCTT
45748668 TCCTTTTTAGCCAAATGGAAGAAGTTTCTTCCAAGGTGACACTTTTGGAAATTCTTTGTTGCTTA
1 TCCTTTTTAGCCAAATGGAAGAAGTTTCTTCCAAGGTGACACTTTTGGAAATTCTTTGTTGCTTA
45748733 CTTGAAATTCAATTTCTTTTCTTTTCAAATCCGCGTAAGATATTTGTCGATCCTAAGCCGTTTTC
66 CTTGAAATTCAATTTCTTTTCTTTTCAAATCCGCGTAAGATATTTGTCGATCCTAAGCCGTTTTC
45748798 AATCTGTCTGGTATCACTCTAAACTTTTCTTCGATATCCCGTAACCAAATAACTTATTCTCATTG
131 AATCTGTCTGGTATCACTCTAAACTTTTCTTCGATATCCCGTAACCAAATAACTTATTCTCATTG
45748863 AGCTCAATCCAATATAAACGGAGTTAGGCAC
196 AGCTCAATCCAATATAAACGGAGTTAGGCAC
45748894 TCCTTTTTAGCCAAATGGAAGAAGTTTCTTCCAAGGTGACACTTTTGGAAATTCTTTGTTGCTTA
1 TCCTTTTTAGCCAAATGGAAGAAGTTTCTTCCAAGGTGACACTTTTGGAAATTCTTTGTTGCTTA
45748959 CTTGAAATTCAATTTCTTTTCTTTTCAAATCCGCGTAAGATATTTGTCGATCCTAAGCCGTTTTC
66 CTTGAAATTCAATTTCTTTTCTTTTCAAATCCGCGTAAGATATTTGTCGATCCTAAGCCGTTTTC
45749024 AATCTGTCTGGTATCACTCTAAACTTTTCTTCGATATCCCGTAACCAAATAACTTATTCTCATTG
131 AATCTGTCTGGTATCACTCTAAACTTTTCTTCGATATCCCGTAACCAAATAACTTATTCTCATTG
*
45749089 AGCTCAATTCAATATAAACGGAGTTAGG
196 AGCTCAATCCAATATAAACGGAGTTAGG
45749117 AACTTTGACC
Statistics
Matches: 222, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
226 222 1.00
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (226 bp):
TCCTTTTTAGCCAAATGGAAGAAGTTTCTTCCAAGGTGACACTTTTGGAAATTCTTTGTTGCTTA
CTTGAAATTCAATTTCTTTTCTTTTCAAATCCGCGTAAGATATTTGTCGATCCTAAGCCGTTTTC
AATCTGTCTGGTATCACTCTAAACTTTTCTTCGATATCCCGTAACCAAATAACTTATTCTCATTG
AGCTCAATCCAATATAAACGGAGTTAGGCAC
Found at i:45757385 original size:42 final size:42
Alignment explanation
Indices: 45757326--45757419 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
45757316 TATGGCCCAT
* * ** *
45757326 AAGCCCATTTCAATATCACATGTAGTGTCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
*
45757368 AAGCCCATTTCAATATCATATGAAATACCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
45757410 AAGCCCATTT
1 AAGCCCATTT
45757420 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGAAATACCAATGAATGTATGC
Found at i:45757642 original size:26 final size:26
Alignment explanation
Indices: 45757552--45757713 Score: 206
Period size: 26 Copynumber: 6.3 Consensus size: 26
45757542 CTGGAGGCCT
45757552 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
45757576 AGCCCTTTTCGGTAAACTGAGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
45757601 AACCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* **
45757627 AGTCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
45757653 AGCCCTTTGCAATAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
45757679 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
45757705 AGCCCTTTT
1 AGCCCTTTT
45757714 GCACTTCCTC
Statistics
Matches: 117, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
23 5 0.04
24 5 0.04
25 30 0.26
26 77 0.66
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:45757788 original size:20 final size:20
Alignment explanation
Indices: 45757763--45757829 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
45757753 TTATGAATAC
45757763 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
45757783 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
45757803 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
45757823 ATCATGT
1 ATCATGT
45757830 ATATCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:45757893 original size:25 final size:25
Alignment explanation
Indices: 45757865--45757912 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45757855 ATAATTAAAC
* * *
45757865 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
45757890 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
45757913 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:45758698 original size:54 final size:54
Alignment explanation
Indices: 45758635--45758765 Score: 158
Period size: 54 Copynumber: 2.4 Consensus size: 54
45758625 CATCCTACAA
* * * * *
45758635 GGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTA-TAATTT-TGTAAATCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTC-AGTAATTTCAG-AAACCAG
**
45758689 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAGAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTCAGAAACCAG
*
45758743 TGGTATTTTGGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAA
45758766 CTAGGGTTGT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 65 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAGTAATTTCAGAAACCAG
Found at i:45758766 original size:27 final size:26
Alignment explanation
Indices: 45758634--45758785 Score: 99
Period size: 27 Copynumber: 5.7 Consensus size: 26
45758624 TCATCCTACA
* * * *
45758634 AGGGTGTTTTGGTAAATCTACAAATCA
1 AGGGTATTTTGGTAATTTTACAAA-CC
* ** *
45758661 AGGGTATTTCT-ATAATTTTGTAAATC
1 AGGGTATTT-TGGTAATTTTACAAACC
**
45758687 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTACAAA-CC
** * *
45758715 AGGGTATTTCAGTAATTTCAGAAACC
1 AGGGTATTTTGGTAATTTTACAAACC
*
45758741 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACC
*
45758768 AGGGTTGTTTTGGTAATT
1 AGGG-TATTTTGGTAATT
45758786 CTACCCTATA
Statistics
Matches: 95, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
26 6 0.06
27 86 0.91
28 3 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACC
Found at i:45758847 original size:27 final size:27
Alignment explanation
Indices: 45758817--45758908 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
45758807 GTAATTTCAC
*
45758817 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAATAATTTTGTA
*
45758844 AATCAAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACAATAATTTTGTA
* * *
45758871 AATCGAGGGTAAAATAATAATTCTATA
1 AATCGAGGGTAAAACAATAATTTTGTA
45758898 AATCGAGGGTA
1 AATCGAGGGTA
45758909 CTTTGGTAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.45, C:0.08, G:0.20, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAATAATTTTGTA
Found at i:45758988 original size:28 final size:27
Alignment explanation
Indices: 45758652--45759058 Score: 125
Period size: 27 Copynumber: 15.0 Consensus size: 27
45758642 TTGGTAAATC
*
45758652 TACAAATCAAGGGTATTTCTA-TAATTT
1 TACAAATCAGGGGTATTT-TAGTAATTT
** *
45758679 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAGGGGTATTTTAGTAATTT
* *
45758706 TACAAAT-TGAGGGTATTTCAGTAATTT
1 TACAAATCAG-GGGTATTTTAGTAATTT
* * * * *
45758733 CAGAAACCAGTGGTATTTTGGTAATTT
1 TACAAATCAGGGGTATTTTAGTAATTT
* * * *
45758760 TACAAA-CTAGGGTTGTTTTGGTAATTC
1 TACAAATC-AGGGGTATTTTAGTAATTT
** *
45758787 TACCCTAT-AGGGGTATTTCAGTAATTT
1 TA-CAAATCAGGGGTATTTTAGTAATTT
* ****
45758814 CAC-AATC-GAGGGTAAAACAGTAATTT
1 TACAAATCAG-GGGTATTTTAGTAATTT
** * **** *
45758840 TGTAAATCAAGGGTAAAACAATAATTT
1 TACAAATCAGGGGTATTTTAGTAATTT
** *** * *
45758867 TGTAAATC-GAGGGTAAAATAATAATTC
1 TACAAATCAG-GGGTATTTTAGTAATTT
* * *
45758894 TATAAATC-GAGGGTACTTTGGTAACTTT
1 TACAAATCAG-GGGTATTTTAGTAA-TTT
* * * *
45758922 TACGAGTC-GAGGGTATTTCAATAATTT
1 TACAAATCAG-GGGTATTTTAGTAATTT
45758949 TACAAATCAGGGGGTATTTTAGTAATTT
1 TACAAATCA-GGGGTATTTTAGTAATTT
* *
45758977 TACAAA-CTAGGGCTATTTTGGTAATTT
1 TACAAATC-AGGGGTATTTTAGTAATTT
*** *
45759004 TATTGATC-GAGGGTATTTTGGTAATTT
1 TACAAATCAG-GGGTATTTTAGTAATTT
** * * *
45759031 TGTAAACCAAGGGTATTTCAGTAATTT
1 TACAAATCAGGGGTATTTTAGTAATTT
45759058 T
1 T
45759059 GTAAATCGAG
Statistics
Matches: 289, Mismatches: 73, Indels: 36
0.73 0.18 0.09
Matches are distributed among these distances:
25 3 0.01
26 19 0.07
27 221 0.76
28 45 0.16
29 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
TACAAATCAGGGGTATTTTAGTAATTT
Found at i:45759048 original size:54 final size:53
Alignment explanation
Indices: 45758888--45759126 Score: 165
Period size: 54 Copynumber: 4.4 Consensus size: 53
45758878 GGTAAAATAA
* * ** * *
45758888 TAATTCTATAAATCGAGGGTACTTTGGTAACTTTTACG-AGTCGAGGGTATTTCAA
1 TAATTTTATAAATCGAGGGTATTTTGGTAA-TTTT--GTAAACAAGGGTATTTCAG
* * * ** * **
45758943 TAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACTAGGGCTATTTTGG
1 TAATTTTATAAATC-GAGGGTATTTTGGTAATTTTGTAAACAAGGG-TATTTCAG
**
45758998 TAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAG
1 TAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAA-CAAGGGTATTTCAG
* *** * * *** *
45759052 TAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGG
1 TAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAA-CAAGGGTATTTCAG
*
45759106 TAATTCTATAAATCGAGGGTA
1 TAATTTTATAAATCGAGGGTA
45759127 AAATGGTAAT
Statistics
Matches: 143, Mismatches: 37, Indels: 9
0.76 0.20 0.05
Matches are distributed among these distances:
54 93 0.65
55 37 0.26
56 13 0.09
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (53 bp):
TAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAACAAGGGTATTTCAG
Found at i:45759059 original size:27 final size:27
Alignment explanation
Indices: 45759013--45759072 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
45759003 TTATTGATCG
**
45759013 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTTGTAAACCA
* *
45759040 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAACCA
45759067 AGGGTA
1 AGGGTA
45759073 AAATGGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAACCA
Found at i:45759081 original size:27 final size:27
Alignment explanation
Indices: 45759051--45759168 Score: 182
Period size: 27 Copynumber: 4.4 Consensus size: 27
45759041 GGGTATTTCA
* *
45759051 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
45759078 GTAATTCTGTAAATCGAGGGTAAGACG
1 GTAATTCTATAAATCGAGGGTAAAATG
45759105 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
45759132 GTAATTCTATAAATCGAGCGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
45759159 GTAATTCTAT
1 GTAATTCTAT
45759169 CTTACAAGAG
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:45759244 original size:27 final size:27
Alignment explanation
Indices: 45759178--45759328 Score: 153
Period size: 27 Copynumber: 5.6 Consensus size: 27
45759168 TCTTACAAGA
45759178 GTATTTCAGTAATTTTACAAAATTGAGG
1 GTATTTCAGTAATTTTAC-AAATTGAGG
* *
45759206 GTATTTCAGTAATTTTGCAAACTGAGG
1 GTATTTCAGTAATTTTACAAATTGAGG
**
45759233 GTATTT-AGGTAATTTTACAAATCAAGG
1 GTATTTCA-GTAATTTTACAAATTGAGG
* ** * *
45759260 ATATTTGGGTAATTTTATAAATTGGGG
1 GTATTTCAGTAATTTTACAAATTGAGG
* * *
45759287 GTACTTT-GGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATTGAGG
45759314 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
45759329 AGTAAACTAA
Statistics
Matches: 101, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.04
27 77 0.76
28 20 0.20
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATTGAGG
Found at i:45759273 original size:244 final size:244
Alignment explanation
Indices: 45758699--45759280 Score: 619
Period size: 244 Copynumber: 2.4 Consensus size: 244
45758689 GGGTATTTTG
* *
45758699 GTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAG-AAACCAGTGGTATTTTGGTAATTTTAC
1 GTAATTTTACAAATTGAGGGTATTTCAGTAATTT-TGCAAACTAG-GGTATTTTGGTAATTTTAC
* * * * *
45758763 AAA-CTAGGGTTGTTTTGGTAA--TTCT-ACCCTATAGGGGTATTTCAGTAATTTCACAATCGAG
64 AAATC-AAGGATATTTTGGTAATTTTATAAACCTATAGGGGTATTTCAGTAATTTCACAATCGAG
* * *
45758824 GGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAATAATTTTGTAAATCGAGGGTAAAATAAT
128 GGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAATAAT
* *** * * *
45758889 AATTCTATAAATCGAGGGTACTTTGGTAACTTTTACGAGTCGAGGGTATTTCA
193 AATTCTATAAATCGAGCGTAAAATGGTAACTTCTACGAG-CAAGAGTATTTCA
* * * * * *
45758942 ATAATTTTACAAATCAGGGGGTATTTTAGTAATTTTACAAACTAGGGCTATTTTGGTAATTTTAT
1 GTAATTTTACAAAT-TGAGGGTATTTCAGTAATTTTGCAAACTAGGG-TATTTTGGTAATTTTAC
** * * * *
45759007 TGATCGAGGGTATTTTGGTAATTTTGTAAACC-A-A-GGGTATTTCAGTAATTTTGTA-AATCGA
64 AAATCAAGGATATTTTGGTAATTTTATAAACCTATAGGGGTATTTCAGTAA-TTT-CACAATCGA
** * * ** **
45759068 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGACGGTAATTCTATAAATCGAGGGTAAAATGG
127 GGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAATAA
*
45759133 TAATTCTATAAATCGAGCGTAAAATGGTAA-TTCTATCTTA-CAAGAGTATTTCA
192 TAATTCTATAAATCGAGCGTAAAATGGTAACTTCTA-C-GAGCAAGAGTATTTCA
*
45759186 GTAATTTTACAAAATTGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTAGGTAATTTTAC
1 GTAATTTTAC-AAATTGAGGGTATTTCAGTAATTTTGCAAACT-AGGGTATTTTGGTAATTTTAC
*
45759251 AAATCAAGGATATTTGGGTAATTTTATAAA
64 AAATCAAGGATATTTTGGTAATTTTATAAA
45759281 TTGGGGGTAC
Statistics
Matches: 277, Mismatches: 49, Indels: 25
0.79 0.14 0.07
Matches are distributed among these distances:
243 15 0.05
244 153 0.55
245 100 0.36
246 6 0.02
247 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (244 bp):
GTAATTTTACAAATTGAGGGTATTTCAGTAATTTTGCAAACTAGGGTATTTTGGTAATTTTACAA
ATCAAGGATATTTTGGTAATTTTATAAACCTATAGGGGTATTTCAGTAATTTCACAATCGAGGGT
AAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATAAATCGAGGGTAAAATAATAAT
TCTATAAATCGAGCGTAAAATGGTAACTTCTACGAGCAAGAGTATTTCA
Found at i:45760755 original size:21 final size:20
Alignment explanation
Indices: 45760716--45760765 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
45760706 CAAAATGGTA
*
45760716 ATTTAAATTGGACTGAATTG
1 ATTTAAATTGGACTAAATTG
* *
45760736 AGTTTAAATTGTATTAAATTG
1 A-TTTAAATTGGACTAAATTG
45760757 ATGTTAAAT
1 AT-TTAAAT
45760766 CTACTTGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.38, C:0.02, G:0.16, T:0.44
Consensus pattern (20 bp):
ATTTAAATTGGACTAAATTG
Found at i:45761001 original size:20 final size:20
Alignment explanation
Indices: 45760963--45761015 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
45760953 ACAAAGCCCG
*
45760963 ATAAATGATATTG-TCTGAA
1 ATAAATGATAATGCTCTGAA
45760982 ATAAATGATAATGCTCTGAA
1 ATAAATGATAATGCTCTGAA
45761002 ATAAATGATAATGC
1 ATAAATGATAATGC
45761016 CCGATAAATG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 12 0.38
20 20 0.62
ACGTcount: A:0.45, C:0.08, G:0.15, T:0.32
Consensus pattern (20 bp):
ATAAATGATAATGCTCTGAA
Found at i:45761024 original size:17 final size:18
Alignment explanation
Indices: 45760958--45761030 Score: 69
Period size: 20 Copynumber: 4.0 Consensus size: 18
45760948 GTCTGACAAA
*
45760958 GCCCG-ATAAATGATATT
1 GCCCGAATAAATGATAAT
* *
45760975 GTCTGAAATAAATGATAAT
1 GCCCG-AATAAATGATAAT
*
45760994 GCTCTGAAATAAATGATAAT
1 GC-CCG-AATAAATGATAAT
45761014 GCCCG-ATAAATGATAAT
1 GCCCGAATAAATGATAAT
45761031 TGATAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
17 15 0.31
19 14 0.29
20 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (18 bp):
GCCCGAATAAATGATAAT
Found at i:45761433 original size:43 final size:43
Alignment explanation
Indices: 45761371--45761500 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
45761361 AGCTCATTAT
45761371 AGCATATGCTAAAGAAAGGATTTAGCCTGGACTGGTAATCCT-
1 AGCATATGCTAAAGAAAGGATTTAGCCTGGACTGGTAATCCTG
* *
45761413 ATGCATATGCTACAGAAAGGATTTAGCCTGGATTGGTAATCCTG
1 A-GCATATGCTAAAGAAAGGATTTAGCCTGGACTGGTAATCCTG
* ** ** * *
45761457 AGCTTATAATGGAGATAGGATTTAGTCTGGACTGGTAATCCTG
1 AGCATATGCTAAAGAAAGGATTTAGCCTGGACTGGTAATCCTG
45761500 A
1 A
45761501 TCTCACTTGA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
42 1 0.01
43 74 0.97
44 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (43 bp):
AGCATATGCTAAAGAAAGGATTTAGCCTGGACTGGTAATCCTG
Found at i:45766526 original size:45 final size:45
Alignment explanation
Indices: 45766428--45766600 Score: 201
Period size: 45 Copynumber: 3.9 Consensus size: 45
45766418 TTTTCTCAAA
* * * * * *
45766428 TCACCGGCATT-TCGCCTACTAGGATC-GAGGCCCGATTA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* *
45766471 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* *
45766516 TCACCGGCATTATAGCCTGCTAGGCCCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
45766561 TCACCGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
45766601 TAATACCAGC
Statistics
Matches: 111, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
43 10 0.09
44 15 0.14
45 84 0.76
46 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:45766641 original size:38 final size:38
Alignment explanation
Indices: 45766593--45766678 Score: 127
Period size: 38 Copynumber: 2.3 Consensus size: 38
45766583 GGCTCAAAGG
* * * *
45766593 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACAAAGCCTGCGGGAATTAA
45766631 CCCGGATATAATACCAGCACAAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACAAAGCCTGCGGGAATTAA
*
45766669 CCTGGATATA
1 CCCGGATATA
45766679 TTATGTAACA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACAAAGCCTGCGGGAATTAA
Found at i:45768510 original size:29 final size:29
Alignment explanation
Indices: 45768477--45768608 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
45768467 GTGACGAGAT
*
45768477 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
45768506 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
45768535 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
45768564 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
45768593 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
45768609 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:45770803 original size:28 final size:27
Alignment explanation
Indices: 45770761--45770850 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 27
45770751 GTGACAGAGT
*
45770761 CACCAGATACAGATATTTTATGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
** *
45770790 CACCAGAACAGATATACGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
*
45770817 CACCAGAACAAATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
45770845 CACCAG
1 CACCAG
45770851 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 21 0.41
28 23 0.45
29 7 0.14
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:45771003 original size:28 final size:28
Alignment explanation
Indices: 45770958--45771020 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
45770948 ATTAACCCTT
*
45770958 GGGGTATAAAGGTCATTTTGCATACACA
1 GGGGTATAAAGGTAATTTTGCATACACA
* *
45770986 GGGGTATAATGGTAATTTTGCATACATA
1 GGGGTATAAAGGTAATTTTGCATACACA
45771014 GGGGTAT
1 GGGGTAT
45771021 TCTAGTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.30, C:0.10, G:0.29, T:0.32
Consensus pattern (28 bp):
GGGGTATAAAGGTAATTTTGCATACACA
Found at i:45778400 original size:29 final size:29
Alignment explanation
Indices: 45778367--45778556 Score: 265
Period size: 29 Copynumber: 6.6 Consensus size: 29
45778357 GTGACGAGAT
45778367 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45778396 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45778425 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45778454 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
45778483 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
45778512 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
45778541 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45778557 AAATCGAGTA
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
28 2 0.01
29 144 0.99
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45786405 original size:29 final size:29
Alignment explanation
Indices: 45786372--45786451 Score: 153
Period size: 28 Copynumber: 2.8 Consensus size: 29
45786362 GTGACGAGAT
45786372 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45786401 TGGCACTAAGTGTGCGTGCT-GAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45786429 TGGCACTAAGTGTGCGTGCTGGA
1 TGGCACTAAGTGTGCGTGCTGGA
45786452 TGGCACTAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 28 0.56
29 22 0.44
ACGTcount: A:0.25, C:0.15, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45786477 original size:21 final size:21
Alignment explanation
Indices: 45786420--45786486 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
45786410 GTGTGCGTGC
45786420 TGAAATATATGGCACTAAGTG
1 TGAAATATATGGCACTAAGTG
** *
45786441 TG-CGTGCTGGATGGCACTAAGTG
1 TGAAAT-AT--ATGGCACTAAGTG
45786464 TGAAATATATGGCACTAAGTG
1 TGAAATATATGGCACTAAGTG
45786485 TG
1 TG
45786487 CGAGCTCGAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 1 0.03
21 18 0.50
23 16 0.44
24 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (21 bp):
TGAAATATATGGCACTAAGTG
Found at i:45791270 original size:28 final size:28
Alignment explanation
Indices: 45791238--45791336 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
45791228 GCAATAAGCC
*
45791238 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
45791266 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
45791294 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
45791323 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45791337 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:45798662 original size:28 final size:28
Alignment explanation
Indices: 45798630--45798728 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
45798620 GCAATAAGCC
*
45798630 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
45798658 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
45798686 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
45798715 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45798729 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:45799594 original size:1 final size:1
Alignment explanation
Indices: 45799590--45799618 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
45799580 TGAACAAAGC
45799590 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
45799619 CTTTCTCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:45800085 original size:27 final size:28
Alignment explanation
Indices: 45800050--45800116 Score: 84
Period size: 26 Copynumber: 2.4 Consensus size: 28
45800040 TTGGGCTGTC
*
45800050 ACACTAGGGGTATAAAGGTCA-TTTGCAT
1 ACAC-AGGGGTATAAAGGTAATTTTGCAT
*
45800078 ACACA-GGGTATAATGGTAATTTTGCAT
1 ACACAGGGGTATAAAGGTAATTTTGCAT
*
45800105 ACATAGGGGTAT
1 ACACAGGGGTAT
45800117 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.35
27 12 0.35
28 10 0.29
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (28 bp):
ACACAGGGGTATAAAGGTAATTTTGCAT
Found at i:45800088 original size:26 final size:27
Alignment explanation
Indices: 45800057--45800112 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
45800047 GTCACACTAG
*
45800057 GGGTATAAAGGTCA-TTTGCATACACA
1 GGGTATAAAGGTAATTTTGCATACACA
* *
45800083 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAAAGGTAATTTTGCATACACA
45800110 GGG
1 GGG
45800113 GTATTCTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 12 0.46
27 14 0.54
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (27 bp):
GGGTATAAAGGTAATTTTGCATACACA
Found at i:45801947 original size:38 final size:38
Alignment explanation
Indices: 45801851--45801938 Score: 117
Period size: 38 Copynumber: 2.3 Consensus size: 38
45801841 GGGGCGTTAC
* * *
45801851 ATATTACCAGCAGGAAGCCTG-CGAGATTTAACCCGGAT
1 ATATTACCAGCACGAAGCCTGTAG-GATTTAACCCAGAT
45801889 ATATTACCAGCACGAAGCCTGTAGGATTTAACCCAGAT
1 ATATTACCAGCACGAAGCCTGTAGGATTTAACCCAGAT
45801927 ATAATT-CCAGCA
1 AT-ATTACCAGCA
45801939 TATAGCCTGC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
38 41 0.91
39 4 0.09
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (38 bp):
ATATTACCAGCACGAAGCCTGTAGGATTTAACCCAGAT
Found at i:45802360 original size:43 final size:45
Alignment explanation
Indices: 45802235--45802352 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 45
45802225 ACAAAACATT
* *
45802235 TCATTTCACCGGAATTATAGCCTGCTAGGCTCAAAGGCTTGAATAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCTGAATAA
* * *
45802281 T-ATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCTG-A-AA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGAATAA
*
45802323 TCATTTCACTGGCATTATAGCCTGCTAGGC
1 TCATTTCACCGGCATTATAGCCTGCTAGGC
45802353 CCGAAGCCCA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 3 0.05
43 25 0.40
44 4 0.06
45 29 0.47
46 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (45 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCTGAATAA
Found at i:45807647 original size:45 final size:45
Alignment explanation
Indices: 45807596--45807721 Score: 182
Period size: 45 Copynumber: 2.8 Consensus size: 45
45807586 ATCATTTCAT
45807596 CGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATCTCAC
1 CGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATCTCAC
* * ** *
45807641 CGGCATTATATCCTGCTAGGCCCAAAGGTGCGAATAGTGTCTCAC
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
*
45807686 CGGCATAATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
45807722 TAATACCAGC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
44 3 0.04
45 67 0.96
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.21
Consensus pattern (45 bp):
CGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCAC
Found at i:45807763 original size:38 final size:38
Alignment explanation
Indices: 45807714--45807911 Score: 245
Period size: 38 Copynumber: 5.2 Consensus size: 38
45807704 GGCTCAAAGG
* *
45807714 CCCGAATATAATACCAGCACTAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
45807752 CCCGGATATAATACCAGTACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
45807790 CCCGGATATATTACCAGCACGAATCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
45807828 CCCGGATATATTACCAGCACGAATCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * * **
45807866 CCTGGATATAATTCCAGCA-TATAGCCTGCGGTCTTTAA
1 CCCGGATATAATACCAGCACGA-AGCCTGCGGGATTTAA
*
45807904 GCCGGATA
1 CCCGGATA
45807912 CAAATATCAT
Statistics
Matches: 140, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
37 1 0.01
38 139 0.99
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:45808305 original size:41 final size:41
Alignment explanation
Indices: 45808181--45808296 Score: 151
Period size: 45 Copynumber: 2.7 Consensus size: 41
45808171 ACATAACATT
*
45808181 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GC-CCAA
* * * *
45808224 TAATATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCAA
1 T--CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCAA
45808267 TCATTTCACCGGCATTATAGCCTGCTAGGC
1 TCATTTCACCGGCATTATAGCCTGCTAGGC
45808297 CTGAAGCCCG
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
41 25 0.40
43 5 0.08
44 2 0.03
45 30 0.48
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (41 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCAA
Found at i:45809674 original size:2 final size:2
Alignment explanation
Indices: 45809667--45809692 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45809657 TCACTTTCAA
45809667 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
45809693 TCGAATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45815286 original size:2 final size:2
Alignment explanation
Indices: 45815279--45815305 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45815269 GAGACTAGTC
45815279 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
45815306 CATGTCATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45816513 original size:65 final size:62
Alignment explanation
Indices: 45816378--45816559 Score: 190
Period size: 65 Copynumber: 2.9 Consensus size: 62
45816368 CATATGTTCG
* * * * *
45816378 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGT
1 GCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACA--TATATCGT
45816440 A
62 A
* * *
45816441 GCTCTCTTGTCTACATGGTGTCATTCACCTGGAACCACGCATGCGACCTAGCTACATATATCGTA
1 GCTCTCTTGTCTACATGGTGT-A--CACATAGAACCACCCATGCGACCTAGCTACATATATCGTA
* *
45816506 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
45816560 CATAATGTCT
Statistics
Matches: 101, Mismatches: 12, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
62 28 0.28
63 18 0.18
64 2 0.02
65 29 0.29
66 22 0.22
67 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (62 bp):
GCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCGTA
Found at i:45835094 original size:15 final size:15
Alignment explanation
Indices: 45835061--45835134 Score: 69
Period size: 15 Copynumber: 4.9 Consensus size: 15
45835051 TTTCCTCATC
* * *
45835061 TTGGATCTCTCTATC
1 TTGGATTTCTTTATT
*
45835076 TTGGATTTCTTTACT
1 TTGGATTTCTTTATT
45835091 TTGGATTTC-TTATT
1 TTGGATTTCTTTATT
* **
45835105 TATGGGTTTCTCCATT
1 T-TGGATTTCTTTATT
45835121 TTGGATTTCTTTAT
1 TTGGATTTCTTTAT
45835135 CATGGTTTTC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
14 5 0.11
15 37 0.80
16 4 0.09
ACGTcount: A:0.14, C:0.15, G:0.15, T:0.57
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:45847467 original size:29 final size:29
Alignment explanation
Indices: 45847405--45847507 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
45847395 GTGACGAAAT
* * *
45847405 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
45847434 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
45847463 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
45847492 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45847508 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:45852737 original size:40 final size:40
Alignment explanation
Indices: 45852678--45852884 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
45852668 CAATTGAATG
* * * *
45852678 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
45852718 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
45852758 ACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
45852797 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
45852837 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
45852877 ATATCCGG
1 ATATCCGG
45852885 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 31 0.22
40 109 0.78
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:45852815 original size:79 final size:80
Alignment explanation
Indices: 45852679--45852884 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 80
45852669 AATTGAATGA
* * ** * ** * *
45852679 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
45852744 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* *
45852757 TACATCCGGGCTAAGA-CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGC
* *
45852821 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
45852838 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGG
45852885 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 62 0.58
80 42 0.39
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:45856597 original size:13 final size:13
Alignment explanation
Indices: 45856581--45856606 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45856571 GAAATGATTT
45856581 TTTGAAAATTTCG
1 TTTGAAAATTTCG
45856594 TTTGAAAATTTCG
1 TTTGAAAATTTCG
45856607 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:45868322 original size:40 final size:40
Alignment explanation
Indices: 45868229--45868410 Score: 181
Period size: 39 Copynumber: 4.6 Consensus size: 40
45868219 AAATTGAATG
* * * * *
45868229 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45868268 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
45868308 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
45868347 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
45868387 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45868411 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 64 0.53
40 56 0.47
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:45876349 original size:39 final size:40
Alignment explanation
Indices: 45876291--45876391 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
45876281 AAATTGAATG
* *
45876291 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
45876330 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
45876370 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
45876392 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:45876384 original size:40 final size:40
Alignment explanation
Indices: 45876291--45876473 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
45876281 AAATTGAATG
* * * * *
45876291 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45876330 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45876370 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
45876410 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
45876450 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45876474 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:45878827 original size:48 final size:48
Alignment explanation
Indices: 45878699--45879024 Score: 329
Period size: 48 Copynumber: 6.8 Consensus size: 48
45878689 TGACACCGTA
* *
45878699 ATATATGTGCCTTTGTAAGACCATGTCTGGGACATGGCATCGGCGATT
1 ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * * * * *
45878747 ATATATGTACTTGTGT-A-ACCATCTCTGGGACATGGAATTGGCGACG
1 ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * *
45878793 ATACATGTGCCTCTGTAAGACCATGTCTGGGACATGGCATCGACGATG
1 ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * * *
45878841 ATATGTGTG-CTAATGTAAGACCGTGTCTGGGACATGGCATCGGTGATG
1 ATATATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * * * * *
45878889 ATATGTGTGCCAGTATAAGACCATGTTTGGGACATGGCATCAGTGATG
1 ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * ** *
45878937 ATATGTGTGCCAGTGTAAGACCATGTCTGGTCCATGGCATCGGTGAT-
1 ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
* * *
45878984 -TATATGTGCATTCATGTAAGACCATGTCGGGGACATGGCAT
1 ATATATGTGC-CT-GTGTAAGACCATGTCTGGGACATGGCAT
45879025 TGGTACTTAA
Statistics
Matches: 231, Mismatches: 41, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
46 44 0.19
47 4 0.02
48 182 0.79
49 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.29
Consensus pattern (48 bp):
ATATATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATG
Found at i:45887789 original size:79 final size:81
Alignment explanation
Indices: 45887668--45887859 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
45887658 GGATATAACG
* * **
45887668 ACTCGCTCGAATGCCTTCGGGACAAAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGGA-C
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTC-GGATC
* *
45887731 TTAACCCGGGTTTAGTA
65 TTAACCCGGATATAGTA
*
45887748 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TATTAACTCGCACGAATGCCTTCGGATCT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
** *
45887811 TAGTCCGGATATAGTC
66 TAACCCGGATATAGTA
*
45887827 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
45887860 CATCATTCAA
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.56
80 40 0.41
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACGAATGCCTTCGGATCT
TAACCCGGATATAGTA
Found at i:45887859 original size:40 final size:40
Alignment explanation
Indices: 45887668--45887859 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
45887658 GGATATAACG
* * ** *
45887668 ACTCGCTCGAATGCCTTCGGGACAAAGCCCGGTTATAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45887708 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
* *
45887748 ACTCGCAC-AAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACGAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * *
45887787 ACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACGAAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
45887827 ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACGAAAGCCTTCGGGACTTAGCCCGGA
45887860 CATCATTCAA
Statistics
Matches: 128, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.24
40 87 0.68
41 8 0.06
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACGAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:45895200 original size:12 final size:12
Alignment explanation
Indices: 45895172--45895204 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
45895162 TGACATCATC
45895172 ATTTAAAAA-AT
1 ATTTAAAAATAT
45895183 -TTTAAAAATAT
1 ATTTAAAAATAT
45895194 ATTTAAAAATA
1 ATTTAAAAATA
45895205 AAAAGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.40
11 2 0.10
12 10 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATTTAAAAATAT
Found at i:45896467 original size:29 final size:31
Alignment explanation
Indices: 45896422--45896483 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
45896412 TTTAATTTAC
45896422 AAGTTTAGGGGCAAAAA-TATAATTTTGACA
1 AAGTTTAGGGGCAAAAATTATAATTTTGACA
* *
45896452 AAGTTTAGGGG-AAAAATTGTAATTTTGCCA
1 AAGTTTAGGGGCAAAAATTATAATTTTGACA
45896482 AA
1 AA
45896484 ATATGATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (31 bp):
AAGTTTAGGGGCAAAAATTATAATTTTGACA
Found at i:45896822 original size:27 final size:27
Alignment explanation
Indices: 45896781--45896834 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
45896771 TGTCATGTGA
* *
45896781 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
45896808 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
45896835 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:45897266 original size:101 final size:99
Alignment explanation
Indices: 45897061--45897285 Score: 258
Period size: 101 Copynumber: 2.3 Consensus size: 99
45897051 ATTGTGAGGT
** *
45897061 CATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTA
1 CATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACTA
45897126 AGTGCAAGCTACTATGCCTACCCGATAACTTCGA
66 AGTGCAAGCTACTATGCCTACCCGATAACTTCGA
* * * ** *
45897160 TCATGTGTGTAGCACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 -CATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAATT-GGTCACATGTGTAGTAC
* ** ** *
45897225 TAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCG-
64 TAAGTGCAAGCTACTATGCCTACCCGATAACT--TCGA
45897262 CA--TGTGTAGTACTAAGTGTAGGCT
1 CATGTGTGTAGTACTAAGTGTAGGCT
45897286 GCTATGCATA
Statistics
Matches: 105, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
99 20 0.19
100 39 0.37
101 43 0.41
103 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (99 bp):
CATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACTA
AGTGCAAGCTACTATGCCTACCCGATAACTTCGA
Found at i:45897291 original size:49 final size:50
Alignment explanation
Indices: 45897065--45897291 Score: 224
Period size: 49 Copynumber: 4.6 Consensus size: 50
45897055 TGAGGTCATG
* * *
45897065 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTCACA
* ** * * * **
45897114 TGTGTAGTACTAAGTGCAAGCTACTATGCCTACCCGATAACTTCGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TTAGGTCACA
* * * ** ** *
45897165 TGTGTAGCACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTCACA
* *
45897215 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTCACA
* *
45897264 TGTGTAGTACTAAGTGTAGGCTGCTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
45897292 CATACCAGAT
Statistics
Matches: 141, Mismatches: 35, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
49 65 0.46
50 43 0.30
51 33 0.23
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTAGGTCACA
Found at i:45900120 original size:20 final size:20
Alignment explanation
Indices: 45900081--45900131 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
45900071 TTAAATTTAT
**
45900081 TTTAAA-TAAAAATATTAAA
1 TTTAAATTAAAAATAGAAAA
45900100 TTTAAATTAAAAATAGAAAA
1 TTTAAATTAAAAATAGAAAA
45900120 TTATAATATTAA
1 TT-TAA-ATTAA
45900132 GTATTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 13 0.48
21 3 0.11
22 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (20 bp):
TTTAAATTAAAAATAGAAAA
Found at i:45900388 original size:29 final size:30
Alignment explanation
Indices: 45900338--45900394 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
45900328 AAAGAATATG
45900338 TATTTTTTACAAATTTCTAAAATATATAATA
1 TATTTTTTACAAATTTCTAAAATA-ATAATA
45900369 TATTTTTTA-AAATTT-TAAAATAATAA
1 TATTTTTTACAAATTTCTAAAATAATAA
45900395 AAAATTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 4 0.15
29 7 0.27
30 6 0.23
31 9 0.35
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
TATTTTTTACAAATTTCTAAAATAATAATA
Found at i:45900416 original size:18 final size:18
Alignment explanation
Indices: 45900377--45900415 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
45900367 TATATTTTTT
*
45900377 AAAATTTTAAAATAATAA
1 AAAATTATAAAATAATAA
45900395 AAAATTATAAAA-AATAA
1 AAAATTATAAAATAATAA
45900412 AAAA
1 AAAA
45900416 AAAGTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAAATTATAAAATAATAA
Found at i:45900418 original size:10 final size:10
Alignment explanation
Indices: 45900385--45900417 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
45900375 TTAAAATTTT
45900385 AAAATAATAA
1 AAAATAATAA
*
45900395 AAAATTATAA
1 AAAATAATAA
45900405 AAAATAA-AA
1 AAAATAATAA
45900414 AAAA
1 AAAA
45900418 AGTATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAAATAATAA
Found at i:45900542 original size:20 final size:20
Alignment explanation
Indices: 45900513--45900550 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45900503 CTTTTGAATT
*
45900513 TAGATGTATTGTCTTAAACC
1 TAGATATATTGTCTTAAACC
*
45900533 TAGATATATTGTTTTAAA
1 TAGATATATTGTCTTAAA
45900551 TTTTTAGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (20 bp):
TAGATATATTGTCTTAAACC
Found at i:45909070 original size:39 final size:40
Alignment explanation
Indices: 45909007--45909190 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 40
45908997 GCGACTCGCT
* * * *
45909007 CGATTGTCTTCGGGACCTAGCCCGGTTATAGTGA-TTGCA
1 CGATTGCCTTCGGGTCTTAGCCCGGTTATAGTAACTTGCA
* *
45909046 CGATTGCCTTCGGGTCTTAACCCGGATT-TGGTAACTTGCA
1 CGATTGCCTTCGGGTCTTAGCCCGG-TTATAGTAACTTGCA
* * * ** **
45909086 CAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCACA
1 CGATTGCCTTCGGGTCTTAGCCCGGTTATAGTAACTTGCA
* * * * *
45909126 CGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCA
1 CGATTGCCTTCGGGTCTTAGCCCGGTTATAGTAACTTGCA
** *
45909166 TAATTGCCTTCGGGACTTAGCCCGG
1 CGATTGCCTTCGGGTCTTAGCCCGG
45909191 ATATCATTCC
Statistics
Matches: 118, Mismatches: 24, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
39 26 0.22
40 92 0.78
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CGATTGCCTTCGGGTCTTAGCCCGGTTATAGTAACTTGCA
Found at i:45909095 original size:40 final size:40
Alignment explanation
Indices: 45909041--45909194 Score: 166
Period size: 40 Copynumber: 3.9 Consensus size: 40
45909031 GTTATAGTGA
* * * ***
45909041 TTGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAAC
1 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
*
45909081 TTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
1 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
** **
45909121 TCACACGAATGCCTTCGGGTCTTAGCCCGGATATAATTAC
1 TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
* * *
45909161 TAGCA-TAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTGCACGAA-TGCCTTCGGGTCTTAGCCCGGATAT
45909195 CATTCCAATG
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 95 0.98
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
TTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAAC
Found at i:45909150 original size:80 final size:80
Alignment explanation
Indices: 45909044--45909194 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 80
45909034 ATAGTGATTG
* * ** * *
45909044 CACGATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 CACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCC
45909109 GGATATAACAACTCA
66 GGATATAACAACTCA
* * * *
45909124 CACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTGCCTTCGGGACTTAGCCC
1 CACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCC
45909189 GGATAT
66 GGATAT
45909195 CATTCCAATG
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
CACGAATGCCTTCGGGTCTTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCC
GGATATAACAACTCA
Found at i:45921925 original size:8 final size:8
Alignment explanation
Indices: 45921912--45921941 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
45921902 CTAGATCGGC
45921912 AAAAGCCG
1 AAAAGCCG
45921920 AAAAGCCG
1 AAAAGCCG
*
45921928 AAATGCCG
1 AAAAGCCG
45921936 AAAAGC
1 AAAAGC
45921942 TGACATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:45925359 original size:40 final size:40
Alignment explanation
Indices: 45925294--45925369 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
45925284 TACTGCCTCG
45925294 TATAGCCGAAGCTATTCCAATTCGCACACTTAGTGCAATT
1 TATAGCCGAAGCTATTCCAATTCGCACACTTAGTGCAATT
**
45925334 TATAGCCGAAGCTATTTTGAA-TCGCACACTTAGTGC
1 TATAGCCGAAGCTA-TTCCAATTCGCACACTTAGTGC
45925370 CAAACATAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (40 bp):
TATAGCCGAAGCTATTCCAATTCGCACACTTAGTGCAATT
Found at i:45925557 original size:57 final size:57
Alignment explanation
Indices: 45925469--45925584 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
45925459 TCATTTATCA
45925469 CGTACGAACTTACCTCGTACTCAGAATTGATAATTCGGATCATTTACTCGTAACCTT
1 CGTACGAACTTACCTCGTACTCAGAATTGATAATTCGGATCATTTACTCGTAACCTT
*
45925526 CGTACGAACTTACCTCGTACTCAGAATTGATAATTCGGGTCATTTACTCGTAACCTT
1 CGTACGAACTTACCTCGTACTCAGAATTGATAATTCGGATCATTTACTCGTAACCTT
45925583 CG
1 CG
45925585 ATTTCCCTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.33
Consensus pattern (57 bp):
CGTACGAACTTACCTCGTACTCAGAATTGATAATTCGGATCATTTACTCGTAACCTT
Found at i:45929646 original size:105 final size:105
Alignment explanation
Indices: 45929464--45929675 Score: 390
Period size: 105 Copynumber: 2.0 Consensus size: 105
45929454 CAACAGGCAT
*
45929464 TGATTCAACTTTCTTTTCAGTCACTTTCATGTCAAGCACATAAGCTAAATAAGCTTTGCAACCCT
1 TGATTCAACTTTCTTTTCAGTCACTTTCATGTCAAGCACATAAGCTAAATAAGCTTCGCAACCCT
45929529 TTCTCACATA-TTTCTGAGCTAGCATCACTAAAATCACTGC
66 TTCTCACATATTTTC-GAGCTAGCATCACTAAAATCACTGC
*
45929569 TGATTCAACTTTCTTTTCAGTCAGTTTCATGTCAAGCACATAAGCTAAATAAGCTTCGCAACCCT
1 TGATTCAACTTTCTTTTCAGTCACTTTCATGTCAAGCACATAAGCTAAATAAGCTTCGCAACCCT
45929634 TTCTCACATATTTTCGAGCTAGCATCACTAAAATCACTGC
66 TTCTCACATATTTTCGAGCTAGCATCACTAAAATCACTGC
45929674 TG
1 TG
45929676 GCAATCCGTT
Statistics
Matches: 104, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
105 100 0.96
106 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.34
Consensus pattern (105 bp):
TGATTCAACTTTCTTTTCAGTCACTTTCATGTCAAGCACATAAGCTAAATAAGCTTCGCAACCCT
TTCTCACATATTTTCGAGCTAGCATCACTAAAATCACTGC
Found at i:45942065 original size:29 final size:29
Alignment explanation
Indices: 45942032--45942219 Score: 168
Period size: 29 Copynumber: 6.6 Consensus size: 29
45942022 GTGACGAGAT
45942032 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45942061 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
45942090 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * **
45942119 TGACACTATGTGTGCAAGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
45942147 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
45942176 TGGCACTGTGTGTGCG-GCT-TAAAT-TA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45942202 CGTGGCACTAAGTGTGCG
1 --TGGCACTAAGTGTGCG
45942220 AAATCGAGTG
Statistics
Matches: 134, Mismatches: 22, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 2 0.01
28 38 0.28
29 92 0.69
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45949905 original size:29 final size:29
Alignment explanation
Indices: 45949872--45949993 Score: 165
Period size: 29 Copynumber: 4.2 Consensus size: 29
45949862 GTGACGAGAT
*
45949872 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
45949901 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
45949930 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* * *
45949959 TGACACTATGTGTGCAAGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
45949987 CGGCACT
1 TGGCACT
45949994 GGGTGTGTGA
Statistics
Matches: 84, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 8 0.10
29 76 0.90
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45959172 original size:40 final size:40
Alignment explanation
Indices: 45959087--45959237 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
45959077 AATTGAATGA
* * * *
45959087 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
45959127 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
45959168 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
45959207 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45959238 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:45959251 original size:40 final size:40
Alignment explanation
Indices: 45959124--45959253 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
45959114 ATGCTGGAAA
* * *
45959124 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
45959164 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
45959204 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
45959244 TTATATCCGG
1 TTATATCCGG
45959254 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:45959252 original size:80 final size:80
Alignment explanation
Indices: 45959086--45959253 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
45959076 AAATTGAATG
* *
45959086 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
45959151 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
45959166 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
45959229 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
45959246 ATATCCGG
1 ATATCCGG
45959254 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:45967165 original size:40 final size:40
Alignment explanation
Indices: 45967080--45967230 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
45967070 AATTGAATGA
* * * *
45967080 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
45967120 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
45967161 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
45967200 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
45967231 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:45967244 original size:40 final size:40
Alignment explanation
Indices: 45967117--45967246 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
45967107 ATGCTGGAAA
* * *
45967117 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
45967157 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
45967197 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
45967237 TTATATCCGG
1 TTATATCCGG
45967247 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:45967245 original size:80 final size:80
Alignment explanation
Indices: 45967079--45967246 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
45967069 AAATTGAATG
* *
45967079 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
45967144 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
45967159 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
45967222 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
45967239 ATATCCGG
1 ATATCCGG
45967247 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:45989728 original size:20 final size:21
Alignment explanation
Indices: 45989695--45989734 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
45989685 AATGAAATAG
45989695 ATTTTAGCAAAATTA-AACAC
1 ATTTTAGCAAAATTATAACAC
45989715 ATTTT-GCAACAATTATAACA
1 ATTTTAGCAA-AATTATAACA
45989735 TAAATAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 10 0.56
21 4 0.22
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (21 bp):
ATTTTAGCAAAATTATAACAC
Found at i:45998945 original size:48 final size:48
Alignment explanation
Indices: 45998885--45999017 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 48
45998875 ATCGATATGT
* *
45998885 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAC
* * **
45998933 GATCCCACGTAAGACCATGTCTAGGACATGGCATTGGCATCAATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAC
* * *
45998981 GATCCCATGTAAGACCATATCTGAGATATGGCATTGG
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
45999018 GATCCTACCA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATAC
Found at i:45998949 original size:91 final size:94
Alignment explanation
Indices: 45998794--45999017 Score: 226
Period size: 96 Copynumber: 2.4 Consensus size: 94
45998784 GGTTATGTAC
* * * * ** *
45998794 GATCCCATATAAGACCATGTTTGGGACATGGCTTTGGCAGTGATATGTAATTTCCTATAAGACCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTGATATCTAAGATCCCATAAGACCA
* *
45998859 TAG-CT-GGGC-T-ATTGACATCGATATGT
66 T-GTCTAGGACATGATTGACATCAATATGT
* *
45998885 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CTATCTACGATCCCACGTAAGAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTGATATCTAAGATCCCA--TAAGAC
*
45998948 CATGTCTAGGACATGGCATTGGCATCAATATGT
64 CATGTCTAGGACAT-G-ATTGACATCAATATGT
* * *
45998981 GATCCCATGTAAGACCATATCTGAGATATGGCATTGG
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
45999018 GATCCTACCA
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
89 9 0.08
90 2 0.02
91 47 0.43
92 3 0.03
93 1 0.01
96 48 0.44
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (94 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAGTGATATCTAAGATCCCATAAGACCA
TGTCTAGGACATGATTGACATCAATATGT
Found at i:46006080 original size:49 final size:49
Alignment explanation
Indices: 46006020--46006129 Score: 148
Period size: 49 Copynumber: 2.2 Consensus size: 49
46006010 TAATATGGAT
* * *
46006020 AAGCCACCAGATAATACAGACAAGTTGCCAGATACAGAATATTGTGGTC
1 AAGCCACCAGATAATACAGACAAATTGCCAGATACAGAATATTGTAGTA
** * *
46006069 AAGCCACCAGATAATGTAGTCAAATTGCCAGATACATAATATTGTAGTA
1 AAGCCACCAGATAATACAGACAAATTGCCAGATACAGAATATTGTAGTA
*
46006118 AAGCTACCAGAT
1 AAGCCACCAGAT
46006130 TTGCAGACAT
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (49 bp):
AAGCCACCAGATAATACAGACAAATTGCCAGATACAGAATATTGTAGTA
Found at i:46006891 original size:37 final size:37
Alignment explanation
Indices: 46006841--46006916 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
46006831 ACATACATCA
46006841 AAACCCAATTGAACATGTTCCATAATTACCCAATTCG
1 AAACCCAATTGAACATGTTCCATAATTACCCAATTCG
46006878 AAACCCAATTGAACATGTTCCATAATTACCCAATTCG
1 AAACCCAATTGAACATGTTCCATAATTACCCAATTCG
46006915 AA
1 AA
46006917 CCAAACTTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.26
Consensus pattern (37 bp):
AAACCCAATTGAACATGTTCCATAATTACCCAATTCG
Found at i:46023584 original size:29 final size:29
Alignment explanation
Indices: 46023522--46023624 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
46023512 GTGACGAGAT
* * *
46023522 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
46023551 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
46023580 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
46023609 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46023625 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:46031595 original size:29 final size:29
Alignment explanation
Indices: 46031533--46031635 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
46031523 GTGACGAGAT
* * *
46031533 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
46031562 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
46031591 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
46031620 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46031636 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:46038655 original size:17 final size:18
Alignment explanation
Indices: 46038613--46038661 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
46038603 AGTTGAAAAG
46038613 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
46038632 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
46038649 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
46038662 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:46039550 original size:40 final size:40
Alignment explanation
Indices: 46039484--46039650 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
46039474 AAATTGAATG
* * *
46039484 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
46039523 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
46039563 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
46039603 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
46039643 ATATCCGG
1 ATATCCGG
46039651 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46056419 original size:30 final size:30
Alignment explanation
Indices: 46056357--46056450 Score: 102
Period size: 30 Copynumber: 3.1 Consensus size: 30
46056347 GCGGCCTAAG
* * *
46056357 ACACAGGCGTGAGTCTTAGCCGTATGAA-GC
1 ACACAGGCGTGTGTCTCAGCCGTGT-AAGGC
*
46056387 ACACAGGCGTGTGTCTCAACCGTGTAAGGC
1 ACACAGGCGTGTGTCTCAGCCGTGTAAGGC
* *
46056417 ACA-TGGCTGTGTGTCTCAGCCGTGTGAGGC
1 ACACAGGC-GTGTGTCTCAGCCGTGTAAGGC
46056447 ACAC
1 ACAC
46056451 GGTTGTATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
29 5 0.09
30 49 0.91
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.21
Consensus pattern (30 bp):
ACACAGGCGTGTGTCTCAGCCGTGTAAGGC
Found at i:46060741 original size:40 final size:40
Alignment explanation
Indices: 46060696--46060862 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
46060686 CGGAATATAA
46060696 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46060736 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46060776 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46060816 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46060855 CCGGATAT
1 CCGGATAT
46060863 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46060846 original size:80 final size:79
Alignment explanation
Indices: 46060712--46060862 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
46060702 ATAATCACGT
*
46060712 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
46060777 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
46060792 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
46060855 CCGGATAT
64 CCGGATAT
46060863 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:46065649 original size:68 final size:67
Alignment explanation
Indices: 46065577--46065726 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46065567 CATCATGTGT
* * * *
46065577 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46065639 ATGTAG
62 ATGTAG
** * *
46065645 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46065710 AG
66 AG
46065712 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46065727 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46065682 original size:64 final size:64
Alignment explanation
Indices: 46065601--46065784 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46065591 AGACATTATG
* *
46065601 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46065665 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46065730 AA
63 AA
* * * *
46065732 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46065785 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46065983 original size:24 final size:26
Alignment explanation
Indices: 46065932--46065984 Score: 83
Period size: 27 Copynumber: 2.1 Consensus size: 26
46065922 TGATGTGTTC
46065932 ATTAAGTGACCAGGATGTGGTAAGGTT
1 ATTAAGTGACCAGGA-GTGGTAAGGTT
46065959 ATTAAGTGACCAGGA-T-GTAAGGTT
1 ATTAAGTGACCAGGAGTGGTAAGGTT
46065983 AT
1 AT
46065985 AAACAAGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 10 0.38
25 1 0.04
27 15 0.58
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (26 bp):
ATTAAGTGACCAGGAGTGGTAAGGTT
Found at i:46070105 original size:68 final size:67
Alignment explanation
Indices: 46070033--46070182 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46070023 CATCATGTGT
* * * *
46070033 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46070095 ATGTAG
62 ATGTAG
** * *
46070101 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46070166 AG
66 AG
46070168 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46070183 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46070138 original size:64 final size:64
Alignment explanation
Indices: 46070057--46070240 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46070047 AGACATTATG
* *
46070057 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46070121 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46070186 AA
63 AA
* * * *
46070188 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46070241 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46070420 original size:28 final size:27
Alignment explanation
Indices: 46070388--46070444 Score: 105
Period size: 28 Copynumber: 2.1 Consensus size: 27
46070378 TGATGTGTTC
46070388 ATTAAGTGACCAGGATGTGGTAATGGTT
1 ATTAAGTGACCAGGATGTGGTAA-GGTT
46070416 ATTAAGTGACCAGGATGTGGTAAGGTT
1 ATTAAGTGACCAGGATGTGGTAAGGTT
46070443 AT
1 AT
46070445 AAACAAGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.32
Consensus pattern (27 bp):
ATTAAGTGACCAGGATGTGGTAAGGTT
Found at i:46074559 original size:68 final size:67
Alignment explanation
Indices: 46074487--46074636 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46074477 CATCATGTGT
* * * *
46074487 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46074549 ATGTAG
62 ATGTAG
** * *
46074555 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46074620 AG
66 AG
46074622 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46074637 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46074592 original size:64 final size:64
Alignment explanation
Indices: 46074511--46074694 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46074501 AGACATTATG
* *
46074511 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46074575 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46074640 AA
63 AA
* * * *
46074642 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46074695 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46079009 original size:68 final size:67
Alignment explanation
Indices: 46078937--46079086 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46078927 CATCATGTGT
* * * *
46078937 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46078999 ATGTAG
62 ATGTAG
** * *
46079005 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46079070 AG
66 AG
46079072 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46079087 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46079042 original size:64 final size:64
Alignment explanation
Indices: 46078961--46079144 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46078951 AGACATTATG
* *
46078961 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46079025 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46079090 AA
63 AA
* * * *
46079092 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46079145 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Done.