Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 150 of 318
Found at i:46083747 original size:35 final size:35
Alignment explanation
Indices: 46083708--46083778 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
46083698 GTTATGTGAA
46083708 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
46083743 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
1 TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
46083778 T
1 T
46083779 TATAAACAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.08, G:0.34, T:0.32
Consensus pattern (35 bp):
TGATGTGTTCATTAAGTGACCAGGATGTGGTAAGG
Found at i:46088963 original size:24 final size:24
Alignment explanation
Indices: 46088939--46089362 Score: 732
Period size: 24 Copynumber: 17.9 Consensus size: 24
46088929 GACTATAGCA
* **
46088939 AATCGCACACATAGTGCTATAGCA
1 AATCGCACACATAGTGCCATAGTG
*
46088963 AATCG--CACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTG
*
46088985 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTG
46089009 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089033 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
*
46089057 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTG
*
46089081 AATCGCACACATAGTGCTATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089105 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
*
46089129 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTG
46089153 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089177 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
*
46089201 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTG
46089225 AATCGCACACATAGT---ATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089246 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089270 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089294 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089318 AATCGCACACATAGTGCCATAGTG
1 AATCGCACACATAGTGCCATAGTG
46089342 AATCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATA
46089363 TGGTCTTTGC
Statistics
Matches: 384, Mismatches: 11, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
21 20 0.05
22 20 0.05
24 344 0.90
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
AATCGCACACATAGTGCCATAGTG
Found at i:46091780 original size:27 final size:26
Alignment explanation
Indices: 46091740--46091896 Score: 179
Period size: 27 Copynumber: 5.8 Consensus size: 26
46091730 TAAATCGAGG
* *
46091740 GGGTACTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTACAAATT-A
** *
46091767 GGGTATTTCAGTAATTTCACAAATTAA
1 GGGTATTTTGGTAATTTTACAAATT-A
*
46091794 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAATTA
**
46091820 GGGGTATTTTGGTAATTTTACAAACCA
1 -GGGTATTTTGGTAATTTTACAAATTA
*
46091847 GGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAAATTA
*
46091874 GGGGTATTTTGGTAATTCTACAA
1 -GGGTATTTTGGTAATTTTACAA
46091897 CTTATCCACT
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 115 0.99
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATTA
Found at i:46091852 original size:81 final size:81
Alignment explanation
Indices: 46091739--46091896 Score: 210
Period size: 81 Copynumber: 2.0 Consensus size: 81
46091729 GTAAATCGAG
*** *
46091739 GGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTCAGTAATTTCACAAATTAAGGGTATTTTG
1 GGGGTACTTTGGTAATTTTACAACCAGAGGGTATTTCAGTAATTTCACAAACTAAGGGTATTTTG
*
46091804 GTAATTTTACAAACTA
66 GTAATTCTACAAACTA
* ** * *
46091820 GGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 GGGGTACTTTGGTAATTTTAC-AACCAGAGGGTATTTCAGTAATTTCACAAACTAAGGGTATTTT
46091884 GGTAATTCTACAA
65 GGTAATTCTACAA
46091897 CTTATCCACT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 63 0.95
82 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (81 bp):
GGGGTACTTTGGTAATTTTACAACCAGAGGGTATTTCAGTAATTTCACAAACTAAGGGTATTTTG
GTAATTCTACAAACTA
Found at i:46091883 original size:54 final size:54
Alignment explanation
Indices: 46091739--46091896 Score: 210
Period size: 54 Copynumber: 2.9 Consensus size: 54
46091729 GTAAATCGAG
* * * ** * **
46091739 GGGGTACTTTGGTAATTTTAC-AAGTTGAGGGTATTTCAGTAATTTCACAAATTA
1 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCA
*
46091793 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
*
46091847 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAA
46091897 CTTATCCACT
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 88 0.96
55 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
Found at i:46099590 original size:29 final size:28
Alignment explanation
Indices: 46099556--46099658 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46099546 TACTCAATCA
*
46099556 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
46099585 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
46099614 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
46099643 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
46099659 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:46104562 original size:40 final size:39
Alignment explanation
Indices: 46104518--46104643 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
46104508 GGGACTCAAC
*
46104518 CCGGATTTAGTAGCTTGCTCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTA-CTTGCACGAAAGCCTTCGGATCTTAGT
* * * *
46104558 CCGGATTTAGTAACTCGCACGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGT-ACTTGCACGAAAGCCTTCGGATCTTAGT
*
46104598 CCGGATTTAGTCACTTAGCAC-AAAGCCTTCGGGA-CTTAGC
1 CCGGATTTAGT-ACTT-GCACGAAAGCCTTC-GGATCTTAGT
46104638 CCGGAT
1 CCGGAT
46104644 ATCATTCGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
40 64 0.89
41 8 0.11
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (39 bp):
CCGGATTTAGTACTTGCACGAAAGCCTTCGGATCTTAGT
Found at i:46104602 original size:80 final size:80
Alignment explanation
Indices: 46104457--46104643 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
46104447 GCTACACATT
* * *
46104457 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTCAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCGTCGGGACTCAACCCG
*
46104521 GATTTAGT-AGCTT-GCT
64 GATTTAGTCA-CTTAGCA
* * * **
46104537 CGAAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTATGCCGTC-GGATCTTAGTCC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGA-CTCAACCC
46104600 GGATTTAGTCACTTAGCA
63 GGATTTAGTCACTTAGCA
46104618 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
46104644 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 6 0.07
80 72 0.80
81 12 0.13
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCGTCGGGACTCAACCCGGA
TTTAGTCACTTAGCA
Found at i:46110875 original size:29 final size:28
Alignment explanation
Indices: 46110841--46110943 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46110831 TACTCAATCA
*
46110841 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
46110870 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
46110899 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
46110928 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
46110944 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:46113007 original size:2 final size:2
Alignment explanation
Indices: 46113000--46113045 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
46112990 GGCTACCAGA
46113000 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46113042 AT AT
1 AT AT
46113046 GTGTGTGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46113050 original size:2 final size:2
Alignment explanation
Indices: 46113045--46113082 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
46113035 TATATATATA
*
46113045 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
46113083 GCGAAGCCAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
TG
Found at i:46113846 original size:27 final size:27
Alignment explanation
Indices: 46113816--46113869 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
46113806 ATCGGTAGTC
*
46113816 CTACCCTACAAGGGTATTTCGATAATT
1 CTACCCTACAAGGGTACTTCGATAATT
*
46113843 CTACCCTACAAGGGTACTTCGGTAATT
1 CTACCCTACAAGGGTACTTCGATAATT
46113870 TTATAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (27 bp):
CTACCCTACAAGGGTACTTCGATAATT
Found at i:46113938 original size:27 final size:26
Alignment explanation
Indices: 46113908--46114063 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 26
46113898 TGTAAATCGG
* *
46113908 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAA-TCTA
** *
46113935 GGGTATTTCAGTAATTTCACAAAT-TA
1 GGGTATTTTGGTAATTTTAC-AATCTA
*
46113961 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAATCTA
*
46113987 GGGGTATTTTGGTAATTTTACAAACTA
1 -GGGTATTTTGGTAATTTTACAATCTA
**
46114014 GGGGTATTTTGGTAATTTTACAAAATA
1 -GGGTATTTTGGTAATTTTACAATCTA
*
46114041 GGGGTATTTTGGTAATTCTACAA
1 -GGGTATTTTGGTAATTTTACAA
46114064 CATCTCTACT
Statistics
Matches: 115, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
25 2 0.02
26 20 0.17
27 91 0.79
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAATCTA
Found at i:46113971 original size:53 final size:54
Alignment explanation
Indices: 46113907--46114049 Score: 182
Period size: 53 Copynumber: 2.7 Consensus size: 54
46113897 CTGTAAATCG
* * *
46113907 GGGGTACTTTGGTAATTTTACAAGTCGA-GGGTATTTCAGTAATTTCACAAATTA
1 GGGGTATTTTGGTAATTTTACAA-ACGAGGGGTATTTCAGTAATTTCACAAACTA
* ** *
46113961 -GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAAACTA
**
46114014 GGGGTATTTTGGTAATTTTACAAAATAGGGGTATTT
1 GGGGTATTTTGGTAATTTTACAAACGAGGGGTATTT
46114050 TGGTAATTCT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
52 2 0.03
53 43 0.54
54 34 0.43
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACGAGGGGTATTTCAGTAATTTCACAAACTA
Found at i:46114043 original size:54 final size:54
Alignment explanation
Indices: 46113907--46114063 Score: 210
Period size: 54 Copynumber: 2.9 Consensus size: 54
46113897 CTGTAAATCG
* * * ** * *
46113907 GGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAGTAATTTCACAAATTA
1 GGGGTATTTTGGTAATTTTACAAAATAG-GGGTATTTTGGTAATTTTACAAACTA
*
46113961 -GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGTAATTTTACAAACTA
*
46114014 GGGGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGTAATTCTACAA
1 GGGGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGTAATTTTACAA
46114064 CATCTCTACT
Statistics
Matches: 92, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
53 41 0.45
54 51 0.55
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.39
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAAATAGGGGTATTTTGGTAATTTTACAAACTA
Found at i:46115535 original size:42 final size:42
Alignment explanation
Indices: 46115465--46115634 Score: 178
Period size: 42 Copynumber: 4.0 Consensus size: 42
46115455 GTTACTCGGG
* * * * *
46115465 AATCTTGCACACTATGTTCCAATACATAGCCGAAGCTAACTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * *
46115507 AATCACGCACACTAAGTGCCAATGCATAGTCGAAGCTATCTT
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* ** * *
46115549 GATCTCAAACATTAAGTGCCAATGCATAGCCGAAGCTATCCC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
* * * **
46115591 GATCTTGCACACTAAGTGTCAATTAATAGCCGAAGCTATCTC
1 AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
46115633 AA
1 AA
46115635 ATATTTTTGT
Statistics
Matches: 103, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 103 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
AATCTCGCACACTAAGTGCCAATGCATAGCCGAAGCTATCTC
Found at i:46117089 original size:47 final size:49
Alignment explanation
Indices: 46117013--46117142 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 49
46117003 AACCCGGCCC
* *
46117013 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCA
* *
46117061 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
*
46117106 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
46117143 TCAACCATCC
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.42
47 28 0.41
48 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (49 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA
Found at i:46117158 original size:46 final size:44
Alignment explanation
Indices: 46117015--46117158 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
46117005 CCCGGCCCTA
*
46117015 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
46117062 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
46117108 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
46117154 AGTGA
1 AGTGA
46117159 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:46129348 original size:48 final size:48
Alignment explanation
Indices: 46129295--46129391 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
46129285 TCTGTTTGGT
46129295 TGAATGGAATGCCCTACTACAGGCTTATTCCATTACAAGCCTATGCAG
1 TGAATGGAATGCCCTACTACAGGCTTATTCCATTACAAGCCTATGCAG
*
46129343 TGAATGGAATGCCCTATTACAGGCTTATTCCATTACAAGCCTATGCAG
1 TGAATGGAATGCCCTACTACAGGCTTATTCCATTACAAGCCTATGCAG
46129391 T
1 T
46129392 AAAATTGCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (48 bp):
TGAATGGAATGCCCTACTACAGGCTTATTCCATTACAAGCCTATGCAG
Found at i:46133019 original size:16 final size:15
Alignment explanation
Indices: 46133000--46133057 Score: 80
Period size: 16 Copynumber: 3.7 Consensus size: 15
46132990 GATTACAGCC
46133000 CTATTCCATTATAGCT
1 CTATTCCATTATAG-T
46133016 CTATTCCATTATAGTT
1 CTATTCCATTATAG-T
*
46133032 CTATTCCATTACAGT
1 CTATTCCATTATAGT
46133047 CATATTCCATT
1 C-TATTCCATT
46133058 CCAGTGAACC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
15 2 0.05
16 37 0.95
ACGTcount: A:0.26, C:0.24, G:0.05, T:0.45
Consensus pattern (15 bp):
CTATTCCATTATAGT
Found at i:46136006 original size:68 final size:67
Alignment explanation
Indices: 46135931--46136080 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46135921 CATCATGTGT
* * * *
46135931 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46135993 ATGTAG
62 ATGTAG
** * *
46135999 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46136064 AG
66 AG
46136066 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46136081 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46136036 original size:64 final size:64
Alignment explanation
Indices: 46135955--46136138 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46135945 AGACATTATG
* *
46135955 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46136019 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46136084 AA
63 AA
* * * *
46136086 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46136139 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46140448 original size:68 final size:67
Alignment explanation
Indices: 46140376--46140525 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46140366 CATCATGTGT
* * * *
46140376 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46140438 ATGTAG
62 ATGTAG
** * *
46140444 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46140509 AG
66 AG
46140511 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46140526 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46140481 original size:64 final size:64
Alignment explanation
Indices: 46140400--46140583 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46140390 AGACATTATG
* *
46140400 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46140464 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46140529 AA
63 AA
* * * *
46140531 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46140584 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46144878 original size:68 final size:67
Alignment explanation
Indices: 46144806--46144955 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
46144796 CATCATGTGT
* * * *
46144806 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
46144868 ATGTAG
62 ATGTAG
** * *
46144874 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
46144939 AG
66 AG
46144941 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
46144956 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:46144911 original size:64 final size:64
Alignment explanation
Indices: 46144830--46145013 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46144820 AGACATTATG
* *
46144830 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
46144894 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46144959 AA
63 AA
* * * *
46144961 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
46145014 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46145175 original size:22 final size:23
Alignment explanation
Indices: 46145150--46145202 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
46145140 GGTTATGTGA
46145150 ATGATGTGT-TCATTAAGTGACC
1 ATGATGTGTGTCATTAAGTGACC
46145172 ATGATGTGTGTCATTAAGTGACC
1 ATGATGTGTGTCATTAAGTGACC
*
46145195 AGGATGTG
1 ATGATGTG
46145203 GTAAGGTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 9 0.31
23 20 0.69
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.34
Consensus pattern (23 bp):
ATGATGTGTGTCATTAAGTGACC
Found at i:46147094 original size:22 final size:22
Alignment explanation
Indices: 46147060--46147123 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 22
46147050 TACAGGGCTC
**
46147060 ACACGCCTATGTGGTCCAAGGG
1 ACACGCCCGTGTGGTCCAAGGG
** *
46147082 ACACGCCCGTGTGACCCTA-GG
1 ACACGCCCGTGTGGTCCAAGGG
* *
46147103 ACGCTCCCGTGTGGTCCAAGG
1 ACACGCCCGTGTGGTCCAAGG
46147124 CGCACACCCA
Statistics
Matches: 31, Mismatches: 10, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (22 bp):
ACACGCCCGTGTGGTCCAAGGG
Found at i:46155412 original size:22 final size:22
Alignment explanation
Indices: 46155359--46155404 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
46155349 ACACTGTAGG
* *
46155359 CAGGATAGCACATAGCCGTAAA
1 CAGGACAGCACATAGCAGTAAA
46155381 CAGGACAGCACATAGCAGTAAA
1 CAGGACAGCACATAGCAGTAAA
46155403 CA
1 CA
46155405 TTGCAGCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.24, G:0.22, T:0.11
Consensus pattern (22 bp):
CAGGACAGCACATAGCAGTAAA
Found at i:46155643 original size:22 final size:22
Alignment explanation
Indices: 46155607--46155671 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
46155597 GCAAATACGT
46155607 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* *
46155629 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
46155651 TTGGTGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
46155672 AATAATTAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46157676 original size:40 final size:41
Alignment explanation
Indices: 46157553--46157677 Score: 114
Period size: 40 Copynumber: 3.1 Consensus size: 41
46157543 AAATTGAATG
* * * * * **
46157553 ATATC-CGGGCCAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCTCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* **
46157593 ATAT-TCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCTCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
46157633 ATATCT-GGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCTCGGGCTAAGACCCGAAGGCAATTGTGCTA-GTGATT
46157673 ATATC
1 ATATC
46157678 CGGTTATATT
Statistics
Matches: 68, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
39 1 0.01
40 66 0.97
41 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (41 bp):
ATATCTCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:46166280 original size:29 final size:29
Alignment explanation
Indices: 46166248--46166325 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 29
46166238 ATACCCTCCG
** * *
46166248 AGCTCGCACACCCAGTGCCGTATTTTTTC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
46166277 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
46166306 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
46166326 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.22, C:0.32, G:0.18, T:0.28
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:46171028 original size:49 final size:48
Alignment explanation
Indices: 46170938--46171351 Score: 574
Period size: 47 Copynumber: 8.7 Consensus size: 48
46170928 AAGATTTTAC
46170938 GTGATGAATGTG-AAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
* * *
46170985 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGAT
1 GTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
* * *
46171034 GTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGG-CGAG
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
46171080 GTGATGAATGTG-AAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
* * *
46171127 GTGATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGAT
1 GTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAATGGCCAAT
* *
46171176 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGAT
1 GTGATGAATGTGAAAG-GTGTATATATGTGATAAGGCCGAATGGCCA-AT
46171225 GTGATGAATGTG-AAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
* * * * *
46171272 GTGATGAAAGTG-AAGGTGTATATATGTGGTAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
* *
46171319 GTGATGGATGTGAAA-GTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGGTGTATATATGTGATAAG
46171352 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 26, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
45 2 0.01
46 41 0.12
47 146 0.44
48 14 0.04
49 129 0.39
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (48 bp):
GTGATGAATGTGAAAGGTGTATATATGTGATAAGGCCGAATGGCCAAT
Found at i:46171085 original size:142 final size:143
Alignment explanation
Indices: 46170938--46171351 Score: 690
Period size: 142 Copynumber: 2.9 Consensus size: 143
46170928 AAGATTTTAC
46170938 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
46171003 TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
46171068 CCTAATGGC-GAG
131 CCTAATGGCAGAG
46171080 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
46171145 TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
46171210 GGCCTAATGGCAGAT
129 GGCCTAATGGCAGAG
*
46171225 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAAGTG-AAG-G
1 GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * * * * * *
46171288 TGTATATATGTGGTAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
46171352 TCCCGAAGGG
Statistics
Matches: 258, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
141 14 0.05
142 114 0.44
143 42 0.16
144 28 0.11
145 60 0.23
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (143 bp):
GTGATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
TGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGGCAGAG
Found at i:46172889 original size:17 final size:17
Alignment explanation
Indices: 46172867--46172901 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
46172857 GATTGGGAGG
46172867 ACCCAGGTTCAAGTCAC
1 ACCCAGGTTCAAGTCAC
46172884 ACCCAGGTTCAAGTCAC
1 ACCCAGGTTCAAGTCAC
46172901 A
1 A
46172902 ATGACAGCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.17
Consensus pattern (17 bp):
ACCCAGGTTCAAGTCAC
Found at i:46174964 original size:39 final size:40
Alignment explanation
Indices: 46174845--46174978 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
46174835 TATGTGCATA
46174845 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
46174885 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
46174925 GCATTCGTGCGGGTTATTATAACC-GGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
46174964 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
46174979 GTTACATCCG
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
39 29 0.31
40 64 0.69
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:46175002 original size:79 final size:80
Alignment explanation
Indices: 46174845--46175002 Score: 228
Period size: 79 Copynumber: 2.0 Consensus size: 80
46174835 TATGTGCATA
*
46174845 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
* ** *
46174910 GGTTAAGTCCCGAAG
66 AGCCAAATCCCGAAG
* * *
46174925 GCATTCGTGCGGGTTATTATAACC-GGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTACATCCG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
*
46174989 AGCCAAATTCCGAA
66 AGCCAAATCCCGAA
46175003 AGTATTTATG
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
79 45 0.65
80 24 0.35
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTACAACCG
AGCCAAATCCCGAAG
Found at i:46186182 original size:27 final size:27
Alignment explanation
Indices: 46186142--46186235 Score: 118
Period size: 27 Copynumber: 3.4 Consensus size: 27
46186132 AGGAAGCGTC
*
46186142 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
46186169 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
46186196 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
*
46186224 CTGGTGACTCTG
1 CTGGTGGCTCTG
46186236 TCATATTATC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.05
27 40 0.70
28 14 0.25
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:46186234 original size:28 final size:27
Alignment explanation
Indices: 46186142--46186248 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
46186132 AGGAAGCGTC
* *
46186142 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTACCAC-ATTATCTGTAT
* *
46186169 CTGGTGGCTCTGCCACATATTTCTGT-T
1 CTGGTGGCTCTACCACAT-TATCTGTAT
46186196 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTACCAC-ATTATCTGTAT
* ** *
46186224 CTGGTGACTCTGTCATATTATCTGT
1 CTGGTGGCTCTACCACATTATCTGT
46186249 TTTGGCAGCC
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
26 2 0.03
27 51 0.75
28 15 0.22
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTACCACATTATCTGTAT
Found at i:46186248 original size:54 final size:53
Alignment explanation
Indices: 46186142--46186249 Score: 137
Period size: 54 Copynumber: 2.0 Consensus size: 53
46186132 AGGAAGCGTC
* *
46186142 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTG-CACATATTTCTGTT
* * *
46186196 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTG-TCATATTATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCACATATT-TCTGTT
46186250 TTGGCAGCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 6 0.13
54 28 0.60
55 13 0.28
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCACATATTTCTGTT
Found at i:46193212 original size:93 final size:93
Alignment explanation
Indices: 46193100--46193271 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
46193090 CGCCCATAAG
* *
46193100 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46193165 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
46193193 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46193258 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46193272 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46193268 original size:46 final size:46
Alignment explanation
Indices: 46193093--46193268 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
46193083 TGTAACCCGC
* * *
46193093 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
46193139 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46193189 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46193232 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46193269 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46200787 original size:93 final size:93
Alignment explanation
Indices: 46200675--46200846 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
46200665 CGCCCATAAG
* *
46200675 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46200740 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
46200768 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
46200833 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
46200847 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:46200843 original size:46 final size:46
Alignment explanation
Indices: 46200668--46200843 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
46200658 TGTAACCCGC
* * *
46200668 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
46200714 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
46200764 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
46200807 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
46200844 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:46204488 original size:40 final size:39
Alignment explanation
Indices: 46204361--46204490 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
46204351 ATGCTGGAAA
*
46204361 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
46204401 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
46204441 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
46204481 TTATATCCGG
1 TTATATCCGG
46204491 TTGTATTTCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:46205940 original size:37 final size:37
Alignment explanation
Indices: 46205887--46205977 Score: 137
Period size: 37 Copynumber: 2.4 Consensus size: 37
46205877 TATAAAAGAA
46205887 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* * *
46205924 GTCTTACCCGGTCATAATCTCCATATGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
46205961 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
46205978 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:46206133 original size:49 final size:49
Alignment explanation
Indices: 46206073--46206384 Score: 511
Period size: 49 Copynumber: 6.4 Consensus size: 49
46206063 TTTTACATTA
*
46206073 GCCACTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
46206122 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
46206171 GCCATTAGGCCTCATCACATATACATACACTTTCATATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
46206220 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* *
46206269 GCCATTA-GCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * * * *
46206317 GCCATTAGGCCTCATCACATATACATCCACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
46206366 GCCATTCA-GCCTTATCACA
1 GCCATT-AGGCCTTATCACA
46206385 CATATATGTA
Statistics
Matches: 250, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
48 46 0.18
49 203 0.81
50 1 0.00
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:46206359 original size:27 final size:27
Alignment explanation
Indices: 46206279--46206359 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 27
46206269 GCCATTAGCC
*
46206279 TCATCACATATACATACACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
** *** *
46206306 TCATCAC--AT-CGGCCA-TTAGGC-C
1 TCATCACATATACATCCACTTTCACAT
46206328 TCATCACATATACATCCACTTTCACAT
1 TCATCACATATACATCCACTTTCACAT
46206355 TCATC
1 TCATC
46206360 GCATTGGCCA
Statistics
Matches: 36, Mismatches: 13, Indels: 10
0.61 0.22 0.17
Matches are distributed among these distances:
22 7 0.19
23 3 0.08
24 5 0.14
25 6 0.17
26 3 0.08
27 12 0.33
ACGTcount: A:0.31, C:0.33, G:0.05, T:0.31
Consensus pattern (27 bp):
TCATCACATATACATCCACTTTCACAT
Found at i:46212991 original size:40 final size:40
Alignment explanation
Indices: 46212885--46213068 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
46212875 TGCTGGAAAT
* * * * * **
46212885 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
46212925 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
46212965 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
46213003 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
46213044 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
46213069 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:46217933 original size:29 final size:29
Alignment explanation
Indices: 46217900--46218001 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
46217890 TGACGAGATC
46217900 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
46217929 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
46217958 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
46217987 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
46218002 AGCTCGAGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:46230245 original size:40 final size:40
Alignment explanation
Indices: 46230190--46230399 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
46230180 AACATTGGAA
46230190 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46230230 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
46230270 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
46230310 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
46230349 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
46230390 CTATATCCGG
1 ATATATCCGG
46230400 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:46238254 original size:68 final size:70
Alignment explanation
Indices: 46238182--46238379 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
46238172 ACACCCTGTA
* * * *
46238182 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46238244 ATAAAT
65 ATAAAT
*
46238250 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46238315 ATAAAT
65 ATAAAT
*
46238321 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
46238380 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46238293 original size:41 final size:41
Alignment explanation
Indices: 46238248--46238365 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46238238 TGAAAGATAA
46238248 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46238289 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46238319 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46238360 ATGTAG
1 ATGTAG
46238366 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46238305 original size:71 final size:71
Alignment explanation
Indices: 46238216--46238379 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46238206 GAGATGTATC
46238216 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46238281 AGGACA
66 AGGACA
46238287 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46238352 AGGACA
66 AGGACA
46238358 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46238380 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46245820 original size:68 final size:70
Alignment explanation
Indices: 46245748--46245945 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
46245738 ACACCCTGTA
* * * *
46245748 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46245810 ATAAAT
65 ATAAAT
*
46245816 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46245881 ATAAAT
65 ATAAAT
*
46245887 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
46245946 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46245859 original size:41 final size:41
Alignment explanation
Indices: 46245814--46245931 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46245804 TGAAAGATAA
46245814 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46245855 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46245885 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46245926 ATGTAG
1 ATGTAG
46245932 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46245871 original size:71 final size:71
Alignment explanation
Indices: 46245782--46245945 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46245772 GAGATGTATC
46245782 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46245847 AGGACA
66 AGGACA
46245853 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46245918 AGGACA
66 AGGACA
46245924 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46245946 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46250478 original size:25 final size:25
Alignment explanation
Indices: 46250444--46250491 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
46250434 GTATTTAACA
46250444 CAAAGGCAAGATAAGCTTCACAATC
1 CAAAGGCAAGATAAGCTTCACAATC
*
46250469 CAAAGGCAAGATAAGCTTTACAA
1 CAAAGGCAAGATAAGCTTCACAA
46250492 CCCTTTCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.17
Consensus pattern (25 bp):
CAAAGGCAAGATAAGCTTCACAATC
Found at i:46263191 original size:15 final size:17
Alignment explanation
Indices: 46263161--46263192 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
46263151 TTAACCCTTG
46263161 TGAATGTGACCTTGGTA
1 TGAATGTGACCTTGGTA
46263178 TGAAT-TGA-CTTGGTA
1 TGAATGTGACCTTGGTA
46263193 AAACAGGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.09, G:0.28, T:0.38
Consensus pattern (17 bp):
TGAATGTGACCTTGGTA
Found at i:46263555 original size:42 final size:42
Alignment explanation
Indices: 46263509--46263598 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
46263499 GACACGGGCG
*
46263509 TGTGTCTCAGCCATATGGATGACACGGCCTCAGGCACAAGCA
1 TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
* * * * **
46263551 TGTGTCTCAACCGTGTGGATGACATGGCCTCATGCACGGGCA
1 TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
46263593 TGTGTC
1 TGTGTC
46263599 CTGGGCGTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (42 bp):
TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
Found at i:46266983 original size:40 final size:40
Alignment explanation
Indices: 46266889--46267033 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
46266879 TACTCGAATG
*
46266889 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
46266930 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46266970 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
46267010 ATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46267034 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 64 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46274992 original size:40 final size:40
Alignment explanation
Indices: 46274898--46275042 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
46274888 TACTCGAATG
*
46274898 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
46274939 ACATCCAGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46274979 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
46275019 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46275043 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46276822 original size:39 final size:39
Alignment explanation
Indices: 46276768--46276930 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
46276758 TGTGAATGAA
46276768 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
46276807 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
46276846 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
46276885 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
46276925 TGTGCG
1 TGTGCG
46276931 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:46276946 original size:40 final size:39
Alignment explanation
Indices: 46276768--46276960 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
46276758 TGTGAATGAA
* *
46276768 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
46276807 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
46276846 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
46276885 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
46276925 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
46276961 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:46284758 original size:39 final size:39
Alignment explanation
Indices: 46284704--46284866 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
46284694 TGTGAATGAA
46284704 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
46284743 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
46284782 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
46284821 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
46284861 TGTGCG
1 TGTGCG
46284867 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:46284882 original size:40 final size:39
Alignment explanation
Indices: 46284704--46284896 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
46284694 TGTGAATGAA
* *
46284704 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
46284743 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
46284782 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
46284821 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
46284861 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
46284897 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:46291350 original size:38 final size:39
Alignment explanation
Indices: 46291281--46291441 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
46291271 TGTGAATGAA
46291281 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
46291320 TGTGCGAATTGTGATAT-CGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
46291358 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
46291397 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC-TT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
46291436 TGTGCG
1 TGTGCG
46291442 GGTTACCATA
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
38 35 0.31
39 69 0.61
40 9 0.08
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:46291409 original size:77 final size:78
Alignment explanation
Indices: 46291292--46291441 Score: 250
Period size: 77 Copynumber: 1.9 Consensus size: 78
46291282 GTGCGAATTG
46291292 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATAT-CGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
46291355 AATTGTGCGAGCTA
66 -ATTGTGCGAGCTA
* *
46291369 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
*
46291434 TTTGTGCG
66 ATTGTGCG
46291442 GGTTACCATA
Statistics
Matches: 68, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
77 44 0.65
78 15 0.22
79 9 0.13
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGTCCCGAAGGC
ATTGTGCGAGCTA
Found at i:46295246 original size:42 final size:42
Alignment explanation
Indices: 46295200--46295289 Score: 108
Period size: 42 Copynumber: 2.1 Consensus size: 42
46295190 GACACGAGCG
*
46295200 TGTGTCTCAGCCATATGGATGACACGGCCTCAGGCACAAGCA
1 TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
* * * * * **
46295242 TGTGTCTCAATCGTGTGGATGACATGGCCTCATGCACGGGCA
1 TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
46295284 TGTGTC
1 TGTGTC
46295290 CTGGGCGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (42 bp):
TGTGTCTCAACCATATGGATGACACGGCCTCAGGCACAAGCA
Found at i:46298282 original size:40 final size:40
Alignment explanation
Indices: 46298188--46298332 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
46298178 TACTCGAATG
*
46298188 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
46298229 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46298269 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
46298309 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46298333 CTTGTGAGTG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46306272 original size:40 final size:40
Alignment explanation
Indices: 46306178--46306322 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
46306168 TACTCGAACG
*
46306178 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
46306219 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
46306259 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
46306299 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
46306323 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:46324142 original size:24 final size:24
Alignment explanation
Indices: 46324110--46324196 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
46324100 AATCTCAAAT
46324110 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
46324134 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
46324158 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46324182 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
46324197 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:46324162 original size:48 final size:48
Alignment explanation
Indices: 46324110--46324218 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
46324100 AATCTCAAAT
** *
46324110 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
46324158 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
46324206 GCACTATGTGTGC
1 GCACTATGTGTGC
46324219 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:46324209 original size:24 final size:24
Alignment explanation
Indices: 46324110--46324218 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
46324100 AATCTCAAAT
*
46324110 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
46324134 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
46324158 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
46324182 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
46324206 GCACTATGTGTGC
1 GCACTATGTGTGC
46324219 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:46328001 original size:68 final size:70
Alignment explanation
Indices: 46327929--46328126 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
46327919 ACACCCTGTA
* * * *
46327929 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46327991 ATAAAT
65 ATAAAT
*
46327997 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46328062 ATAAAT
65 ATAAAT
*
46328068 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
46328127 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46328040 original size:41 final size:41
Alignment explanation
Indices: 46327995--46328112 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46327985 TGAAAGATAA
46327995 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46328036 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46328066 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46328107 ATGTAG
1 ATGTAG
46328113 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46328052 original size:71 final size:71
Alignment explanation
Indices: 46327963--46328126 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46327953 GAGATGTATC
46327963 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46328028 AGGACA
66 AGGACA
46328034 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46328099 AGGACA
66 AGGACA
46328105 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46328127 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46335570 original size:68 final size:70
Alignment explanation
Indices: 46335498--46335695 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
46335488 ACACCCTGTA
* * * *
46335498 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46335560 ATAAAT
65 ATAAAT
*
46335566 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46335631 ATAAAT
65 ATAAAT
*
46335637 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
46335696 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46335609 original size:41 final size:41
Alignment explanation
Indices: 46335564--46335681 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46335554 TGAAAGATAA
46335564 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46335605 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46335635 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46335676 ATGTAG
1 ATGTAG
46335682 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46335621 original size:71 final size:71
Alignment explanation
Indices: 46335532--46335695 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46335522 GAGATGTATC
46335532 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46335597 AGGACA
66 AGGACA
46335603 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46335668 AGGACA
66 AGGACA
46335674 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46335696 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46340226 original size:25 final size:25
Alignment explanation
Indices: 46340192--46340239 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
46340182 GTATTTAACA
46340192 CAAAGGCAAGATAAGCTTCACAATC
1 CAAAGGCAAGATAAGCTTCACAATC
*
46340217 CAAAGGCAAGATAAGCTTTACAA
1 CAAAGGCAAGATAAGCTTCACAA
46340240 CCCTTTCTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.46, C:0.21, G:0.17, T:0.17
Consensus pattern (25 bp):
CAAAGGCAAGATAAGCTTCACAATC
Found at i:46343375 original size:68 final size:70
Alignment explanation
Indices: 46343299--46343497 Score: 287
Period size: 71 Copynumber: 2.8 Consensus size: 70
46343289 ACACCCTGTA
* * * *
46343299 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46343361 ATAAAT
65 ATAAAT
*
46343367 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46343432 ATAAAT
65 ATAAAT
*
46343438 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGAC-AAGAGAGCTACG
46343498 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 81 0.67
72 12 0.10
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46343410 original size:41 final size:41
Alignment explanation
Indices: 46343365--46343482 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46343355 TGAAAGATAA
46343365 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46343406 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46343436 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46343477 ATGTAG
1 ATGTAG
46343483 ACAAAGAGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46343422 original size:71 final size:71
Alignment explanation
Indices: 46343333--46343497 Score: 321
Period size: 71 Copynumber: 2.3 Consensus size: 71
46343323 GAGATGTATC
46343333 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46343398 AGGACA
66 AGGACA
46343404 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46343469 AGGACA
66 AGGACA
46343475 CCATGTAGACAAAGAGAGCTACG
1 CCATGTAGAC-AAGAGAGCTACG
46343498 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 81 0.87
72 12 0.13
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46350939 original size:68 final size:70
Alignment explanation
Indices: 46350867--46351064 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
46350857 ACACCCTGTA
* * * *
46350867 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
46350929 ATAAAT
65 ATAAAT
*
46350935 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
46351000 ATAAAT
65 ATAAAT
*
46351006 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
46351065 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:46350978 original size:41 final size:41
Alignment explanation
Indices: 46350933--46351050 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
46350923 TGAAAGATAA
46350933 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
46350974 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46351004 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
46351045 ATGTAG
1 ATGTAG
46351051 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:46350990 original size:71 final size:71
Alignment explanation
Indices: 46350901--46351064 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46350891 GAGATGTATC
46350901 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46350966 AGGACA
66 AGGACA
46350972 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
46351037 AGGACA
66 AGGACA
46351043 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
46351065 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:46359646 original size:21 final size:20
Alignment explanation
Indices: 46359606--46359646 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
46359596 GTAAACATGA
*
46359606 AATTTGTTTCAAAAAGGGTT
1 AATTTGTTTCAAAAAAGGTT
46359626 AATTTGTTTCAAAAAAAGGTT
1 AATTTGTTTC-AAAAAAGGTT
46359647 TTGAAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.39, C:0.05, G:0.17, T:0.39
Consensus pattern (20 bp):
AATTTGTTTCAAAAAAGGTT
Found at i:46362395 original size:66 final size:68
Alignment explanation
Indices: 46362317--46362502 Score: 279
Period size: 71 Copynumber: 2.7 Consensus size: 68
46362307 TAGTACCACT
*
46362317 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46362379 CACG
65 CACG
46362383 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46362448 ATCACG
63 ATCACG
46362454 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATG
46362503 CATATGATGT
Statistics
Matches: 113, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.81
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46362428 original size:71 final size:71
Alignment explanation
Indices: 46362340--46362502 Score: 326
Period size: 71 Copynumber: 2.3 Consensus size: 71
46362330 CGATTTGTCT
46362340 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46362405 CTTTCA
66 CTTTCA
46362411 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46362476 CTTTCA
66 CTTTCA
46362482 CGTAGCTCTCTTGTCTACATG
1 CGTAGCTCTCTTGTCTACATG
46362503 CATATGATGT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46369954 original size:70 final size:71
Alignment explanation
Indices: 46369872--46370242 Score: 659
Period size: 69 Copynumber: 5.3 Consensus size: 71
46369862 CGATTTGTCT
46369872 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGA-CTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46369936 CTTTCA
66 CTTTCA
46369942 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46370007 CTTTCA
66 CTTTCA
*
46370013 CGTAGCTCTCTTGTCTACATGG-GATCC-TCACTT-G-ATCACGCATGTGACCTAGCTACATGTT
1 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACGCATGCGACCTAGCTACAT-TT
46370074 ATCTTTCA
64 ATCTTTCA
46370082 CGTAGCTCTCTTGTCTACAT-GTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46370146 CTTTCA
66 CTTTCA
46370152 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCA--CATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46370215 CTTTCA
66 CTTTCA
46370221 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46370243 GATACATCTC
Statistics
Matches: 291, Mismatches: 2, Indels: 17
0.94 0.01 0.05
Matches are distributed among these distances:
68 27 0.09
69 88 0.30
70 88 0.30
71 88 0.30
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46370129 original size:139 final size:141
Alignment explanation
Indices: 46369872--46370241 Score: 655
Period size: 139 Copynumber: 2.7 Consensus size: 141
46369862 CGATTTGTCT
46369872 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGA-CTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46369936 CTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAC
66 CTTTCACGTAGCTCTCTTGTCTACAT-GTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTAC
46370001 ATTTATCTTTCA
130 ATTTATCTTTCA
*
46370013 CGTAGCTCTCTTGTCTACATGG-GATCC-TCACTT-G-ATCACGCATGTGACCTAGCTACATGTT
1 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACGCATGCGACCTAGCTACAT-TT
46370074 ATCTTTCACGTAGCTCTCTTGTCTACATGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTA
64 ATCTTTCACGTAGCTCTCTTGTCTACATGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTA
46370139 CATTTATCTTTCA
129 CATTTATCTTTCA
46370152 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCA--CATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46370215 CTTTCACGTAGCTCTCTTGTCTACATG
66 CTTTCACGTAGCTCTCTTGTCTACATG
46370242 GGATACATCT
Statistics
Matches: 220, Mismatches: 2, Indels: 16
0.92 0.01 0.07
Matches are distributed among these distances:
138 12 0.05
139 117 0.53
140 61 0.28
141 26 0.12
142 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.36
Consensus pattern (141 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCACGTAGCTCTCTTGTCTACATGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
TTTATCTTTCA
Found at i:46371657 original size:20 final size:20
Alignment explanation
Indices: 46371632--46371677 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
46371622 CCCTTATTTC
46371632 TCTCTTGGAATTATTTAATT
1 TCTCTTGGAATTATTTAATT
46371652 TCTCTTGGAATTATTTAATT
1 TCTCTTGGAATTATTTAATT
46371672 TCTCTT
1 TCTCTT
46371678 CATTACCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.57
Consensus pattern (20 bp):
TCTCTTGGAATTATTTAATT
Found at i:46378297 original size:29 final size:29
Alignment explanation
Indices: 46378207--46378366 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
46378197 ACTCGATTTC
* * **
46378207 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
46378236 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
46378264 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
46378294 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
46378323 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
46378352 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
46378367 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:46391232 original size:23 final size:26
Alignment explanation
Indices: 46391206--46391255 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 26
46391196 TTAATAAGCA
*
46391206 TTAAATTATAT-A-TGTA-TAAATGC
1 TTAAATAATATAATTGTAGTAAATGC
*
46391229 TTAAGTAATATAATTGTAGTAAATGC
1 TTAAATAATATAATTGTAGTAAATGC
46391255 T
1 T
46391256 ATATTATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 9 0.41
24 1 0.05
25 4 0.18
26 8 0.36
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (26 bp):
TTAAATAATATAATTGTAGTAAATGC
Found at i:46392730 original size:40 final size:40
Alignment explanation
Indices: 46392637--46392894 Score: 317
Period size: 41 Copynumber: 6.4 Consensus size: 40
46392627 AAGCCAAGTA
* * * *
46392637 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * * *
46392675 CCTTCAGGACATAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
46392715 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
46392755 CCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAATAACTCGCACAAATG
*
46392796 CCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAATAACTCGCACAAATG
* * *
46392837 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCAC-AAATG
46392878 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
46392895 AGTTATCATC
Statistics
Matches: 198, Mismatches: 16, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 11 0.06
39 15 0.08
40 69 0.35
41 103 0.52
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:46392791 original size:41 final size:41
Alignment explanation
Indices: 46392663--46392894 Score: 337
Period size: 41 Copynumber: 5.7 Consensus size: 41
46392653 GGATATAGCT
* * * * *
46392663 ACTCGCTC-AATGCCTTCAGGACATAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
*
46392702 ACTCACACAAATGCCTTCGGGACTTAGCCCGG-ATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
46392742 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
46392783 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
* * *
46392824 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA-CTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
*
46392864 ACTAGCACAAAATGCCTTCGGGACTTAGCCC
1 ACTCGCAC-AAATGCCTTCGGGACTTAGCCC
46392895 AGTTATCATC
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 6 0.03
40 68 0.38
41 105 0.59
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATGTAATA
Found at i:46394821 original size:42 final size:42
Alignment explanation
Indices: 46394774--46394886 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
46394764 TTGAGATAAG
*
46394774 GTGTAAGACCATATCTGGGATAGGGCATCGATAT-GACACTT-C
1 GTGTAAGACCATATCTGGGATATGGCATCGAT-TCGACA-TTAC
* * * *
46394816 GTGTAACACCATAGCTGGGCTATTGGCATCGATTCGAGATTAC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATTCGACATTAC
* *
46394859 ATGTAAGACCATGTCTGGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
46394887 TGGTACGGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATTCGACATTAC
Found at i:46397115 original size:13 final size:13
Alignment explanation
Indices: 46397097--46397122 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46397087 ACCTTAAAGT
46397097 ATGAGTCCTTATG
1 ATGAGTCCTTATG
46397110 ATGAGTCCTTATG
1 ATGAGTCCTTATG
46397123 TGGTAATTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
ATGAGTCCTTATG
Found at i:46397883 original size:22 final size:22
Alignment explanation
Indices: 46397852--46397893 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
46397842 CTGTTTTTAC
*
46397852 ATATATTAATAAATTTATATAT
1 ATATACTAATAAATTTATATAT
46397874 ATATACTAATAAATTTATAT
1 ATATACTAATAAATTTATAT
46397894 TTTAAATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATACTAATAAATTTATATAT
Found at i:46397912 original size:29 final size:29
Alignment explanation
Indices: 46397880--46397936 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
46397870 ATATATATAC
*
46397880 TAATAAATTTATATTTTAAATTCTTTTTT
1 TAATAAATTTATACTTTAAATTCTTTTTT
*
46397909 TAATAAATTTATACTTTAAATTGTTTTT
1 TAATAAATTTATACTTTAAATTCTTTTT
46397937 ACATATATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (29 bp):
TAATAAATTTATACTTTAAATTCTTTTTT
Found at i:46399213 original size:21 final size:21
Alignment explanation
Indices: 46399189--46399230 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
46399179 TCAATATCAT
46399189 TATCCAACCA-AATAAATTCAA
1 TATCCAA-CATAATAAATTCAA
*
46399210 TATCTAACATAATAAATTCAA
1 TATCCAACATAATAAATTCAA
46399231 CAAGCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (21 bp):
TATCCAACATAATAAATTCAA
Found at i:46407572 original size:44 final size:41
Alignment explanation
Indices: 46407436--46407591 Score: 132
Period size: 42 Copynumber: 3.7 Consensus size: 41
46407426 CAACGCCATA
* * ** *
46407436 TCCCAGATATGGTCTTACATGTTATCAAATATTGATGCCACTG
1 TCCCAGACATGGTCTTACACGAAATC-AA-ATTGATGCCAATG
* * * * *
46407479 TCCTAGACAGGGTCTTACACGAAATCATATACGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAAAT-TGATGCCAATG
* *
46407521 TCTCAGACATTGTCTTACACGTAAATCTCAAATTGATGCCAATG
1 TCCCAGACATGGTCTTACACG-AAA--TCAAATTGATGCCAATG
* *
46407565 TCCCAGACGTGGTCTTACACAAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
46407592 CATATCGGAA
Statistics
Matches: 88, Mismatches: 21, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
41 5 0.06
42 26 0.30
43 26 0.30
44 26 0.30
45 5 0.06
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (41 bp):
TCCCAGACATGGTCTTACACGAAATCAAATTGATGCCAATG
Found at i:46423439 original size:34 final size:34
Alignment explanation
Indices: 46423396--46423465 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
46423386 CAGTAAAGTC
46423396 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
*
46423430 CAGTATCAGTGTGGGCCTTAGCCCATTACAGTAA
1 CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
46423464 CA
1 CA
46423466 CTTGCATAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCTTAGCCCATTACAATAA
Found at i:46425106 original size:41 final size:40
Alignment explanation
Indices: 46424939--46425117 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
46424929 GCTCGATTAT
* * * * *
46424939 CTTCGGGACATTGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACATAGCCCGGTTTTAGTAACTCGCACAAATGC
* **
46424979 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCATGAATGC
1 CTTCGGGACA-TAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
46425019 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACATATGC
1 CTTCGGGACATAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
46425059 CTTCGGGACATAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACATAGCCCGGTTTTAGTAAC-TCGCACAAATGC
*
46425100 CTTCGGGACTTAGCCCGG
1 CTTCGGGACATAGCCCGG
46425118 ATACCATTCG
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 87 0.77
41 25 0.22
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACATAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:46431362 original size:31 final size:32
Alignment explanation
Indices: 46431324--46431387 Score: 112
Period size: 31 Copynumber: 2.0 Consensus size: 32
46431314 AATAAACACA
46431324 TTGCAAATGTCAGAAATCA-ACACTATCAAAT
1 TTGCAAATGTCAGAAATCACACACTATCAAAT
46431355 TTGCAAATGTCAGAAATCACCACACTATCAAAT
1 TTGCAAATGTCAGAAATCA-CACACTATCAAAT
46431388 AATCACATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 19 0.61
33 12 0.39
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.25
Consensus pattern (32 bp):
TTGCAAATGTCAGAAATCACACACTATCAAAT
Found at i:46432905 original size:40 final size:40
Alignment explanation
Indices: 46432861--46433039 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
46432851 GCTCGATTGT
* * * *
46432861 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
46432901 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
46432941 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
46432981 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
46433022 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
46433040 ATACCATTCG
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.76
41 27 0.22
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:46435325 original size:7 final size:7
Alignment explanation
Indices: 46435313--46435345 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
46435303 GTTACTCCAC
46435313 AAGCCCA
1 AAGCCCA
46435320 AAGCCCA
1 AAGCCCA
46435327 AAGCCCA
1 AAGCCCA
46435334 AAGCCCA
1 AAGCCCA
46435341 AAGCC
1 AAGCC
46435346 TACATTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.42, C:0.42, G:0.15, T:0.00
Consensus pattern (7 bp):
AAGCCCA
Found at i:46437807 original size:28 final size:29
Alignment explanation
Indices: 46437762--46437816 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
46437752 ATAGTATTAT
* *
46437762 TGATTAGAAAAATGAGTTCA-AATAATAG
1 TGATTAAAAAAATGAGTTAATAATAATAG
46437790 TGATTAAAAAAACT-AGTTAATAATAAT
1 TGATTAAAAAAA-TGAGTTAATAATAAT
46437817 TTAGGGACAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.53, C:0.04, G:0.13, T:0.31
Consensus pattern (29 bp):
TGATTAAAAAAATGAGTTAATAATAATAG
Found at i:46441637 original size:44 final size:42
Alignment explanation
Indices: 46441568--46441675 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 42
46441558 ATATGTGTTA
* * * *
46441568 TCGTGTAAGACCACGTTTGGAACGTTGGCGTCGACT-TATGATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATC-A-TATATGATT
*
46441611 TACGTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATT
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATCATATATGATT
* *
46441654 TCGTGCAAGACCCTGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
46441676 TAGTGGCATC
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
42 20 0.36
43 9 0.16
44 27 0.48
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCATATATGATT
Found at i:46441671 original size:42 final size:44
Alignment explanation
Indices: 46441606--46441695 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 44
46441596 CGTCGACTTA
* *
46441606 TGATTTACGTGTAAGACCATGTCTGGGA-CGTTGGCATC-ATATT
1 TGATTTACGTGCAAGACCATGTCTGGGATAG-TGGCATCGATATT
*
46441649 TGATTT-CGTGCAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTACGTGCAAGACCATGTCTGGGATAGTGGCATCGATATT
46441692 TGAT
1 TGAT
46441696 GACATGTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
42 26 0.62
43 16 0.38
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (44 bp):
TGATTTACGTGCAAGACCATGTCTGGGATAGTGGCATCGATATT
Found at i:46441707 original size:43 final size:42
Alignment explanation
Indices: 46441615--46441709 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
46441605 ATGATTTACG
* ** *
46441615 TGTAAGACCATGTCTGGGACGTTGGCATCATATTTGATTTCG
1 TGTAAGACCATGTCTGGGAAGTTGGCATCATATTTGATGACA
* *
46441657 TGCAAGACCCTGTCTGGGATAG-TGGCATCGATATTTGATGACA
1 TGTAAGACCATGTCTGGGA-AGTTGGCATC-ATATTTGATGACA
46441700 TGTAAGACCA
1 TGTAAGACCA
46441710 CGATGTACGT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 24 0.56
43 19 0.44
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGAAGTTGGCATCATATTTGATGACA
Found at i:46446623 original size:71 final size:71
Alignment explanation
Indices: 46446539--46446702 Score: 301
Period size: 71 Copynumber: 2.3 Consensus size: 71
46446529 CGATTTGTCT
*
46446539 CGTAGCTCTCTTGTCTAGATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
46446604 CTTTCA
66 CTTTCA
* *
46446610 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
46446675 CTTTCA
66 CTTTCA
46446681 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46446703 GATACATCTC
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 90 1.00
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:46446740 original size:71 final size:70
Alignment explanation
Indices: 46446539--46446736 Score: 240
Period size: 71 Copynumber: 2.8 Consensus size: 70
46446529 CGATTTGTCT
* * * * * *
46446539 CGTAGCTCTCTTGTCTAGATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46446604 CTTTCA
65 CTTTCA
* * * *
46446610 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46446675 CTTTCA
65 CTTTCA
* *
46446681 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
46446737 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46449055 original size:41 final size:40
Alignment explanation
Indices: 46448901--46449066 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
46448891 TGGGACATTG
* * * * * * *
46448901 CCCGGTTATAGTGATTCACACAATTGCCTTCGGGAATTAG
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * *
46448941 CTCGGATTTAGTAACTCGCACGAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
*
46448981 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAA
1 CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
* * * *
46449021 CCCGGTTTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAG
1 CCCGGTTTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAA
46449062 CCCGG
1 CCCGG
46449067 ATACCATTCG
Statistics
Matches: 106, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 79 0.75
41 27 0.25
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCCGGTTTTAGTAACTCGCACAAATGCCTTCGGGACTTAA
Found at i:46456240 original size:40 final size:40
Alignment explanation
Indices: 46456196--46456374 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
46456186 GCTCGATTGT
* * * *
46456196 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * **
46456236 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCAGGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
46456276 CTTCAGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
46456316 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
46456357 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
46456375 ATACCATTCG
Statistics
Matches: 116, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 2 0.02
40 87 0.75
41 27 0.23
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:46457973 original size:71 final size:71
Alignment explanation
Indices: 46457889--46458052 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46457879 CGATTTGTCT
46457889 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46457954 CTTTCA
66 CTTTCA
46457960 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46458025 CTTTCA
66 CTTTCA
46458031 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46458053 GATACTCTCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46465175 original size:42 final size:42
Alignment explanation
Indices: 46465128--46465242 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
46465118 GTATGTGTTA
46465128 TCGTGTAAGACCATGTCTGGGACGTTGGCATCG-TATTTGATT
1 TCGTGTAAGACCATGTCTGGGAC-TTGGCATCGATATTTGATT
* * * *
46465170 TCGTGTATGACCCTGTCTGGGACAATGACATCGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGAC-TTGGCATCGATATTTGATT
* * * *
46465213 ACATGTAAGACAACGTCTGGGACTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACTTGGCAT
46465243 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 13, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
42 33 0.56
43 26 0.44
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACTTGGCATCGATATTTGATT
Found at i:46465231 original size:43 final size:41
Alignment explanation
Indices: 46465131--46465235 Score: 102
Period size: 43 Copynumber: 2.5 Consensus size: 41
46465121 TGTGTTATCG
* ** * * *
46465131 TGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTCG
1 TGTAAGA-CACGTCTGGGACAATGACATCGTATTTGATTACA
* *
46465173 TGTATGACCCTGTCTGGGACAATGACATCGATATTTGATTACA
1 TGTAAGACAC-GTCTGGGACAATGACATCG-TATTTGATTACA
46465216 TGTAAGACAACGTCTGGGAC
1 TGTAAGAC-ACGTCTGGGAC
46465236 TTGGCATTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 22 0.44
43 26 0.52
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (41 bp):
TGTAAGACACGTCTGGGACAATGACATCGTATTTGATTACA
Found at i:46471999 original size:2 final size:2
Alignment explanation
Indices: 46471992--46472019 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
46471982 CGGCTCTAGC
46471992 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46472020 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.