Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 151 of 318
Found at i:46472782 original size:41 final size:40
Alignment explanation
Indices: 46472725--46472903 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
46472715 CGAATGGTAT
* * *
46472725 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
46472766 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
46472806 TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
46472846 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
46472886 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
46472904 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.76
41 26 0.22
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:46480834 original size:40 final size:39
Alignment explanation
Indices: 46480779--46480956 Score: 205
Period size: 40 Copynumber: 4.5 Consensus size: 39
46480769 CGAATGGTAT
* * *
46480779 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
46480819 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAA
* *
46480859 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
46480898 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
46480939 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
46480957 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
39 10 0.08
40 108 0.90
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46480981 original size:80 final size:80
Alignment explanation
Indices: 46480813--46480982 Score: 182
Period size: 80 Copynumber: 2.1 Consensus size: 80
46480803 GTGCTAAGTG
* * * * *
46480813 ACTAAA-CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * * *
46480877 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
46480892 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAA
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAA
*
46480956 GACAATCGAGCTAGTC
65 GACAATCGAGCGAGTC
* *
46480972 GCTATATCCGG
1 ACTAAATCCGG
46480983 TTAAATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
79 8 0.11
80 66 0.89
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:46483663 original size:46 final size:45
Alignment explanation
Indices: 46483610--46483785 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
46483600 TATTTGGGCA
*
46483610 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGC
* * *
46483655 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C-AAGC
* * *
46483702 ATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAC
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGC
* * *
46483748 ACCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46483786 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
45 5 0.05
46 61 0.58
47 30 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGC
Found at i:46483765 original size:93 final size:93
Alignment explanation
Indices: 46483606--46483778 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
46483596 GGGATATTTG
* * * *
46483606 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCCAACTCGTTGAG
46483671 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
46483699 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAC-ACCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCCAA-CTCGTTGA
46483763 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
46483779 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGACCCAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:46485308 original size:16 final size:16
Alignment explanation
Indices: 46485289--46485319 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46485279 CTTCTTCACT
46485289 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
46485305 TACTTACTTACTTAA
1 TACTCACTTACTTAA
46485320 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:46485325 original size:20 final size:20
Alignment explanation
Indices: 46485286--46485325 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46485276 AAACTTCTTC
* *
46485286 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
46485306 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
46485326 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:46486811 original size:40 final size:40
Alignment explanation
Indices: 46486763--46486852 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
46486753 ATAACAACTC
*
46486763 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAGTCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
* * *
46486803 GCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTA
1 GCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
46486843 GCACAAATGC
1 GCACAAATGC
46486853 TGTGACAGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACTA
Found at i:46488600 original size:40 final size:40
Alignment explanation
Indices: 46488541--46488682 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
46488531 AAATTGAATG
* * *
46488541 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
46488581 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
46488621 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
46488661 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
46488683 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:46488683 original size:40 final size:39
Alignment explanation
Indices: 46488580--46488708 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
46488570 TGCTGGAAAT
* * *
46488580 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
46488620 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
46488660 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
46488700 TATATCCGG
1 TATATCCGG
46488709 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:46490127 original size:40 final size:40
Alignment explanation
Indices: 46490068--46490177 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
46490058 TCGGGGTGTT
* * *
46490068 ACAAATGCCTTCGGGTCTTAGGCCGGATATAG-CAACTCGC
1 ACAAATGCCTTCGGATCTTAGCCCGGATATAGTC-ACTAGC
*
46490108 ACAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTAGC
1 ACAAATGCCTTCGGATCTTAGCCCGGATATAGTCACTAGC
* *
46490148 ACAAAAGCCTTTGGGA-CTTAGCCCGGATAT
1 ACAAATGCC-TTCGGATCTTAGCCCGGATAT
46490178 CATTCGAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 56 0.90
41 6 0.10
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
ACAAATGCCTTCGGATCTTAGCCCGGATATAGTCACTAGC
Found at i:46492372 original size:55 final size:53
Alignment explanation
Indices: 46492229--46492436 Score: 222
Period size: 55 Copynumber: 3.8 Consensus size: 53
46492219 ATCCTTTTGA
* **
46492229 AACTTACCATTGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
** * *
46492282 AACTCCCCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
46492336 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
46492390 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
46492437 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 9 0.07
55 70 0.55
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:46492373 original size:108 final size:110
Alignment explanation
Indices: 46492229--46492429 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
46492219 ATCCTTTTGA
* * * *
46492229 AACTTACCATTGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCCCCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
46492292 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
46492337 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
46492402 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
46492430 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.58
109 6 0.07
110 28 0.34
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:46499903 original size:55 final size:53
Alignment explanation
Indices: 46499764--46499970 Score: 206
Period size: 55 Copynumber: 3.8 Consensus size: 53
46499754 ATCCTTTTGA
* *
46499764 AACTTACCATTGCCATGTCTTGACAT-GTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* *
46499816 AACTCACCAATGCCATGCCTTCG-CATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTT-GACATGGTCTTACATGGGATCC-TTGCCTTAT-G
* ***
46499870 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
** * * *
46499923 AAACCTTACCAATTTTCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -AA-CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
46499971 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
52 23 0.18
53 25 0.20
54 9 0.07
55 69 0.54
56 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:46502233 original size:21 final size:21
Alignment explanation
Indices: 46502208--46502249 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46502198 TCACATGCTT
*
46502208 GTGTGTCCAAGGGACACGCCC
1 GTGTGACCAAGGGACACGCCC
**
46502229 GTGTGACCCCGGGACACGCCC
1 GTGTGACCAAGGGACACGCCC
46502250 ATGCTAGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.38, G:0.33, T:0.12
Consensus pattern (21 bp):
GTGTGACCAAGGGACACGCCC
Found at i:46511335 original size:25 final size:25
Alignment explanation
Indices: 46511301--46511351 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
46511291 GTATTTAGCA
46511301 CAAAGGCAAGATAAGCTTCACAACC
1 CAAAGGCAAGATAAGCTTCACAACC
46511326 CAAAGGCAAGATAAGCTTCACAACC
1 CAAAGGCAAGATAAGCTTCACAACC
46511351 C
1 C
46511352 TTTCTCATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.29, G:0.16, T:0.12
Consensus pattern (25 bp):
CAAAGGCAAGATAAGCTTCACAACC
Found at i:46517966 original size:40 final size:40
Alignment explanation
Indices: 46517900--46518066 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
46517890 AAATTGAATG
* * *
46517900 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
46517939 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
46517979 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
46518019 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
46518059 ATATCCGG
1 ATATCCGG
46518067 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46525976 original size:40 final size:40
Alignment explanation
Indices: 46525910--46526076 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
46525900 AAATTGAATG
* * *
46525910 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
46525949 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
46525989 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
46526029 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
46526069 ATATCCGG
1 ATATCCGG
46526077 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46530719 original size:47 final size:47
Alignment explanation
Indices: 46530648--46531049 Score: 581
Period size: 47 Copynumber: 8.7 Consensus size: 47
46530638 CCCTTCGGGA
* * * * * *
46530648 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
46530695 CCTATCACATATATACACCTTCACATTCATCACATTGGCC----GGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
46530738 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
46530785 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
46530833 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
46530882 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
46530929 CTTATCACATATATACA-CTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
46530974 -TTATCACATATATACACCTTCACATTCATCACA-TGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
46531019 CTTATCACATATATACACATTCACATTCATC
1 CTTATCACATATATACACCTTCACATTCATC
46531050 GCGTAAAATC
Statistics
Matches: 328, Mismatches: 13, Indels: 29
0.89 0.04 0.08
Matches are distributed among these distances:
43 40 0.12
44 27 0.08
45 16 0.05
46 67 0.20
47 90 0.27
48 35 0.11
49 53 0.16
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:46530904 original size:144 final size:142
Alignment explanation
Indices: 46530648--46531049 Score: 628
Period size: 144 Copynumber: 2.9 Consensus size: 142
46530638 CCCTTCGGGA
* * * * * *
46530648 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATAC
46530711 ACCTTCACATTCATCACATTGGCC----GGCCTTATCACATATATACACCTTCACATTCATCACA
65 ACCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
*
46530772 TCTGCCATTAGGC
130 TCGGCCATTAGGC
46530785 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACA
46530850 CACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCAC
66 C-C-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCAC
46530915 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
46530929 CTTATCAC--ATATATACAC-TTCACATTCATCACATCGGCCATTAGG-TTATCACATATATACA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACA
*
46530990 CCTTCACATTCATCACA-TGGCCATTAGGCCTTATCACATATATACACATTCACATTCATC
66 CCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATC
46531050 GCGTAAAATC
Statistics
Matches: 249, Mismatches: 8, Indels: 16
0.91 0.03 0.06
Matches are distributed among these distances:
137 52 0.21
138 33 0.13
139 32 0.13
140 38 0.15
141 27 0.11
142 10 0.04
144 57 0.23
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTATCACATATATACA
CCTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:46534853 original size:43 final size:43
Alignment explanation
Indices: 46534792--46534930 Score: 233
Period size: 43 Copynumber: 3.2 Consensus size: 43
46534782 CCTTGCTCGA
** * *
46534792 ATCACCGGCATTAAGCCTGCTAAGCACGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
*
46534835 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGGCCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
46534878 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
1 ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
46534921 ATCACCGGCA
1 ATCACCGGCA
46534931 TGACTGCTCT
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCTCGAAGACCCGAATACAT
Found at i:46534997 original size:40 final size:40
Alignment explanation
Indices: 46534919--46535161 Score: 263
Period size: 40 Copynumber: 6.0 Consensus size: 40
46534909 ACCCGAATAC
* * * * * * *
46534919 ATATCACCGGCATGACTGCTCTTCGGAACCTGGTCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * *
46534959 ACATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
46534999 ATATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * *
46535039 GTAACACCAGCACGAATGCTCTTCGGGA-TTAACCCGGATAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--AT
* *
46535080 ATATCGCCAGCACGAATGCTCTTCGGGACTTAACCCGGATAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--AT
*
46535122 ATATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
46535162 CATCGTCGAG
Statistics
Matches: 181, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 8 0.04
40 96 0.53
41 27 0.15
42 50 0.28
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
ATATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:46535126 original size:42 final size:42
Alignment explanation
Indices: 46534961--46535161 Score: 268
Period size: 40 Copynumber: 4.9 Consensus size: 42
46534951 GTCCGGATAC
* * *
46534961 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGG--ATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
* * * *
46535001 ATCACTAGCATGAATGCTCTTCGGGATTTAGCCCGGATGTA-
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
*
46535042 A-CACCAGCACGAATGCTCTTCGGGA-TTAACCCGGATATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
* *
46535082 ATCGCCAGCACGAATGCTCTTCGGGACTTAACCCGGATATAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
*
46535124 ATCGCCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
46535162 CATCGTCGAG
Statistics
Matches: 149, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 12 0.08
40 59 0.40
41 24 0.16
42 54 0.36
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (42 bp):
ATCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
Found at i:46537166 original size:47 final size:47
Alignment explanation
Indices: 46537095--46537501 Score: 597
Period size: 47 Copynumber: 8.6 Consensus size: 47
46537085 CCCTTCGGGA
* * * * * *
46537095 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
46537142 CCTATCACATATATACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
46537189 CTTATCACATATATACACCTTCACATTCATCACATCT-GCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACAT-TGGCCATTAGGC
* *
46537236 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCAC--ATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
46537284 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-C-TTCACATTCATCACATTGGCCATTAGGC
*
46537333 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
* *
46537380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
*
46537427 CTTATCACATATATACACACTTCACATTCATCACA-TGGCCATTCGGC
1 CTTATCACATATATACAC-CTTCACATTCATCACATTGGCCATTAGGC
46537474 CTTATCACATATATACA-CTTCACATTCA
1 CTTATCACATATATACACCTTCACATTCA
46537502 ACGTAAAATC
Statistics
Matches: 333, Mismatches: 19, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
45 11 0.03
46 10 0.03
47 209 0.63
48 50 0.15
49 53 0.16
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACCTTCACATTCATCACATTGGCCATTAGGC
Found at i:46537433 original size:191 final size:190
Alignment explanation
Indices: 46537095--46537491 Score: 656
Period size: 191 Copynumber: 2.1 Consensus size: 190
46537085 CCCTTCGGGA
* *
46537095 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
* *
46537158 ACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACCTTCACATTCATCACA
66 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
* *
46537223 TCTGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGG-
131 TCGGCCATTAGGCCTTATCACATATATACACAC-TTCACATTCATCACAT-GGCCATTAGGC
* * *
46537284 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
*
46537349 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
*
46537414 TCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATCACATGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATCACATGGCCATTAGGC
46537474 CTTATCACATATATACAC
1 CTTATCACATATATACAC
46537492 TTCACATTCA
Statistics
Matches: 194, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
189 19 0.10
190 35 0.18
191 140 0.72
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (190 bp):
CTTATCACATATATACACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
ACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACACTTCACATTCATCACATGGCCATTAGGC
Found at i:46540497 original size:28 final size:29
Alignment explanation
Indices: 46540448--46540529 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 29
46540438 ACATACATGT
* * * *
46540448 ATATGGCCCACTAGACCC-AATCTCTTTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
46540476 ATATGGCCCATT-GGCGCAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
46540504 GTATGTCCCATTAGGCCCAAATCACA
1 ATATGGCCCATTAGGCCCAAATCACA
46540530 CACATAGCCA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
27 3 0.07
28 29 0.66
29 12 0.27
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:46544697 original size:22 final size:22
Alignment explanation
Indices: 46544666--46544710 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
46544656 AATACATTTA
46544666 GCACACAGCCATAT-TCAGGTTG
1 GCACACAGCCATATGT-AGGTTG
*
46544688 GCACAGAGCCATATGTAGGTTG
1 GCACACAGCCATATGTAGGTTG
46544710 G
1 G
46544711 TGTAAAGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.95
23 1 0.05
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (22 bp):
GCACACAGCCATATGTAGGTTG
Found at i:46545185 original size:27 final size:27
Alignment explanation
Indices: 46545155--46545208 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
46545145 TACAAGAGTG
46545155 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAAATCTACAAACCAAGGGTA
* * * * *
46545182 TTTTTGTAATTTTGCAAACCAATGGTA
1 TTTTGGTAAATCTACAAACCAAGGGTA
46545209 ATTCTGTAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (27 bp):
TTTTGGTAAATCTACAAACCAAGGGTA
Found at i:46545216 original size:27 final size:26
Alignment explanation
Indices: 46545169--46545542 Score: 142
Period size: 27 Copynumber: 13.9 Consensus size: 26
46545159 GGTAAATCTA
*
46545169 CAAACCAAGGGTATTTTTGTAATTTT
1 CAAACCAAGGGTATTTCTGTAATTTT
* *
46545195 GCAAACCAATGGTAATTCTGTAATTTT
1 -CAAACCAAGGGTATTTCTGTAATTTT
*
46545222 TAAAGGCCAAGGGTATTTCTGTAATTTTT
1 CAAA--CCAAGGGTATTTCTGTAA-TTTT
* * *
46545251 TAAATCAGGGGTATTTCTGTAATTTT
1 CAAACCAAGGGTATTTCTGTAATTTT
*
46545277 CCAAATCAAGGGTATTT-TG-ATATTTT
1 -CAAACCAAGGGTATTTCTGTA-ATTTT
**
46545303 CCAAATTAAGGGTATTT-TGGTAATTTT
1 -CAAACCAAGGGTATTTCT-GTAATTTT
***
46545330 ACAAATTGAGGGTATTTC-GATAATTTT
1 -CAAACCAAGGGTATTTCTG-TAATTTT
***
46545357 -ATAAGTTGAGGGTATTTC-GATAATTTT
1 CA-AA-CCAAGGGTATTTCTG-TAATTTT
*** * *
46545384 ACAGGTCGAGGGTATTT-TGGTAATTTCA
1 -CAAACCAAGGGTATTTCT-GTAATTT-T
* * *
46545412 CAAATCAGGGGTACTTT-GGTAATTTT
1 CAAACCAAGGGTA-TTTCTGTAATTTT
46545438 ACAAACC-AGAGGTATTT-TGGTAATTTT
1 -CAAACCAAG-GGTATTTCT-GTAATTTT
* * * *
46545465 GCTAATCGAGGATATTT-TGGTAATTTT
1 -CAAACCAAGGGTATTTCT-GTAATTTT
* *
46545492 GTAAACCAAGGGTA-TTCAGTAATTTT
1 -CAAACCAAGGGTATTTCTGTAATTTT
* * * *
46545518 GTAAACCAAAGGCATTTCAGTAATT
1 -CAAACCAAGGGTATTTCTGTAATT
46545543 CTACCCTACA
Statistics
Matches: 286, Mismatches: 38, Indels: 46
0.77 0.10 0.12
Matches are distributed among these distances:
25 2 0.01
26 60 0.21
27 192 0.67
28 23 0.08
29 9 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (26 bp):
CAAACCAAGGGTATTTCTGTAATTTT
Found at i:46545236 original size:55 final size:55
Alignment explanation
Indices: 46545173--46545276 Score: 145
Period size: 55 Copynumber: 1.9 Consensus size: 55
46545163 AATCTACAAA
* *
46545173 CCAAGGGTATTTTTGTAATTTTGCAAACCAATGGTAATTCTGTAATTTTTAAAGG
1 CCAAGGGTATTTCTGTAATTTTGCAAACCAAGGGTAATTCTGTAATTTTTAAAGG
** * * *
46545228 CCAAGGGTATTTCTGTAATTTTTTAAATCAGGGGTATTTCTGTAATTTT
1 CCAAGGGTATTTCTGTAATTTTGCAAACCAAGGGTAATTCTGTAATTTT
46545277 CCAAATCAAG
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (55 bp):
CCAAGGGTATTTCTGTAATTTTGCAAACCAAGGGTAATTCTGTAATTTTTAAAGG
Found at i:46545381 original size:54 final size:53
Alignment explanation
Indices: 46545231--46545464 Score: 195
Period size: 54 Copynumber: 4.4 Consensus size: 53
46545221 TTAAAGGCCA
** * * * *
46545231 AGGGTATTTCTG-TAATTTTTTAAATCAGGGGTATTTCTGTAATTTTCCAAATCA
1 AGGGTATTT-TGATAATTTTACAAATTAAGGGTATTTC-GTAATTTTACAAATCG
* * *
46545285 AGGGTATTTTGAT-ATTTTCCAAATTAAGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGATAATTTTACAAATTAAGGGTA-TTTCGTAATTTTACAAATCG
* * * * **
46545338 AGGGTATTTCGATAATTTTATAAGTTGAGGGTATTTCGATAATTTTACAGGTCG
1 AGGGTATTTTGATAATTTTACAAATTAAGGGTATTTCG-TAATTTTACAAATCG
* * * * * *
46545392 AGGGTATTTTGGTAATTTCACAAATCAGGGGTACTTTGGTAATTTTACAAA-CC
1 AGGGTATTTTGATAATTTTACAAATTAAGGGTA-TTTCGTAATTTTACAAATCG
*
46545445 AGAGGTATTTTGGTAATTTT
1 AG-GGTATTTTGATAATTTT
46545465 GCTAATCGAG
Statistics
Matches: 144, Mismatches: 30, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
53 49 0.34
54 91 0.63
55 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.42
Consensus pattern (53 bp):
AGGGTATTTTGATAATTTTACAAATTAAGGGTATTTCGTAATTTTACAAATCG
Found at i:46545452 original size:81 final size:81
Alignment explanation
Indices: 46545155--46545490 Score: 220
Period size: 81 Copynumber: 4.1 Consensus size: 81
46545145 TACAAGAGTG
* * * ** * * *
46545155 TTTTGGTAA-ATCTACAAACCAAGGGTATTTTTGTAATTTTGCAAACCAATGGTAATTCTG-TAA
1 TTTTGGTAATTTC-ACAAATCAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTC-GATAA
* **
46545218 TTTTTAAAGGCCAAGGGTA
64 -TTTTACAGATCAAGGGTA
*** * * * *
46545237 TTTCT-GTAATTTTTTAAATCAGGGGTATTTCTGTAATTTTCCAAATCAAGGGTATTTTGAT-AT
1 TTT-TGGTAATTTCACAAATCAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAAT
* * *
46545300 TTTCCAAATTAAGGGTA
65 TTTACAGATCAAGGGTA
* * * * ****
46545317 TTTTGGTAATTTTACAAAT-TGAGGGTATTTCGATAATTTTATAAGTTGAGGGTATTTCGATAAT
1 TTTTGGTAATTTCACAAATCAG-GGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAAT
* *
46545381 TTTACAGGTCGAGGGTA
65 TTTACAGATCAAGGGTA
* *
46545398 TTTTGGTAATTTCACAAATCAGGGGTACTTT-GGTAATTTTACAAACC-AGAGGTATTTTGGTAA
1 TTTTGGTAATTTCACAAATCAGGGGTA-TTTCGGTAATTTTACAAACCAAG-GGTATTTCGATAA
* * *
46545461 TTTTGCTA-ATCGAGGATA
64 TTTTAC-AGATCAAGGGTA
46545479 TTTTGGTAATTT
1 TTTTGGTAATTT
46545491 TGTAAACCAA
Statistics
Matches: 198, Mismatches: 46, Indels: 21
0.75 0.17 0.08
Matches are distributed among these distances:
79 2 0.01
80 60 0.30
81 86 0.43
82 48 0.24
83 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (81 bp):
TTTTGGTAATTTCACAAATCAGGGGTATTTCGGTAATTTTACAAACCAAGGGTATTTCGATAATT
TTACAGATCAAGGGTA
Found at i:46545484 original size:54 final size:52
Alignment explanation
Indices: 46545231--46545491 Score: 181
Period size: 54 Copynumber: 4.9 Consensus size: 52
46545221 TTAAAGGCCA
* * *
46545231 AGGGTATTTCT-GTAATTTTTTAAATC-AGGGGTATTTCT-GTAATTTTCCAAATCA
1 AGGGTATTT-TGGTAATTTTCT-AATCGA-GGGTATTT-TGGTAATTTTACAAA-CG
* * ** *
46545285 AGGGTATTTTGAT-ATTTTCCAAATTAAGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTT-CTAATCGAGGGTATTTTGGTAATTTTACAAA-CG
* * * * * * **
46545338 AGGGTATTTCGATAATTTTATAAGTTGAGGGTATTTCGATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTCTAA-TCGAGGGTATTTTGGTAATTTTACA-AACG
* * * *
46545392 AGGGTATTTTGGTAATTTCACAAATC-AGGGGTACTTTGGTAATTTTACAAACC
1 AGGGTATTTTGGTAATTT-TCTAATCGA-GGGTATTTTGGTAATTTTACAAACG
*
46545445 AGAGGTATTTTGGTAATTTTGCTAATCGAGGATATTTTGGTAATTTT
1 AG-GGTATTTTGGTAATTTT-CTAATCGAGGGTATTTTGGTAATTTT
46545492 GTAAACCAAG
Statistics
Matches: 163, Mismatches: 32, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
52 1 0.01
53 48 0.29
54 111 0.68
55 3 0.02
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTCTAATCGAGGGTATTTTGGTAATTTTACAAACG
Found at i:46545498 original size:54 final size:54
Alignment explanation
Indices: 46545156--46545507 Score: 159
Period size: 54 Copynumber: 6.5 Consensus size: 54
46545146 ACAAGAGTGT
* * * ** * * *
46545156 TTTGGTAAATCTACAAACCAAGGGTATTTTTGTAATTTTGCAAACCAATGG-TAA
1 TTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAATC-AGGGATAC
* *** *
46545210 TTCT-GTAATTTTTA-AAGGCCAAGGGTATTTCT-GTAATTTTTTAAATCAGGGGTA-
1 TT-TGGTAA-TTTTACAA-ACCAAGGGTATTT-TGGTAATTTCACAAATCAGGGATAC
* * * * * * *
46545264 TTTCTGTAATTTTCCAAATCAAGGGTATTTTGATATTTTC-CAAATTAAGGG-TAT
1 TTT-GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAA-TCAGGGATAC
*** * * * * * *
46545318 TTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTATAAGTTGAGGG-TA-
1 TTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAA-ATCAGGGATAC
* *** * *
46545371 TTTCGATAATTTTACAGGTCGAGGGTATTTTGGTAATTTCACAAATCAGGGGTAC
1 TTT-GGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAATCAGGGATAC
** * *
46545426 TTTGGTAATTTTACAAACC-AGAGGTATTTTGGTAATTTTGCTAATC-GAGGATAT
1 TTTGGTAATTTTACAAACCAAG-GGTATTTTGGTAATTTCACAAATCAG-GGATAC
**
46545480 TTTGGTAATTTTGTAAACCAAGGGTATT
1 TTTGGTAATTTTACAAACCAAGGGTATT
46545508 CAGTAATTTT
Statistics
Matches: 233, Mismatches: 46, Indels: 38
0.74 0.15 0.12
Matches are distributed among these distances:
53 47 0.20
54 144 0.62
55 41 0.18
56 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
TTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAATCAGGGATAC
Found at i:46545519 original size:26 final size:27
Alignment explanation
Indices: 46545484--46545542 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
46545474 GGATATTTTG
* *
46545484 GTAATTTTGTAAACCAAGGGTA-TTCA
1 GTAATTTTGTAAACCAAAGGCATTTCA
46545510 GTAATTTTGTAAACCAAAGGCATTTCA
1 GTAATTTTGTAAACCAAAGGCATTTCA
46545537 GTAATT
1 GTAATT
46545543 CTACCCTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (27 bp):
GTAATTTTGTAAACCAAAGGCATTTCA
Found at i:46545558 original size:27 final size:27
Alignment explanation
Indices: 46545528--46545594 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
46545518 GTAAACCAAA
46545528 GGCATTTCAGTAATTCTACCCTACAAG
1 GGCATTTCAGTAATTCTACCCTACAAG
*
46545555 GGCATTTCAGTAATTCTACCCTACAGG
1 GGCATTTCAGTAATTCTACCCTACAAG
*
46545582 GGTATTTCAGTAA
1 GGCATTTCAGTAA
46545595 AATTAGCCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (27 bp):
GGCATTTCAGTAATTCTACCCTACAAG
Found at i:46548826 original size:22 final size:23
Alignment explanation
Indices: 46548796--46548839 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
46548786 TATCGATCAA
*
46548796 ATCACAACATATAGCATACATTT
1 ATCACAACATAAAGCATACATTT
*
46548819 ATCA-AACATAAAGCATTCATT
1 ATCACAACATAAAGCATACATT
46548840 CTCATAAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (23 bp):
ATCACAACATAAAGCATACATTT
Found at i:46550503 original size:27 final size:27
Alignment explanation
Indices: 46550468--46550538 Score: 124
Period size: 27 Copynumber: 2.6 Consensus size: 27
46550458 TTAGTTTACC
*
46550468 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTAGAA
46550495 AAATTACCAAAATACCCTCGATTAGAA
1 AAATTACCAAAATACCCTCGATTAGAA
*
46550522 AAAGTACCAAAATACCC
1 AAATTACCAAAATACCC
46550539 CTGTAAGGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.48, C:0.25, G:0.07, T:0.20
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTAGAA
Found at i:46550556 original size:27 final size:27
Alignment explanation
Indices: 46550526--46550797 Score: 346
Period size: 27 Copynumber: 10.1 Consensus size: 27
46550516 TTAGAAAAAG
*
46550526 TACCAAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
*
46550553 TACCGAAATACCCCTATAAGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
* * * *
46550580 CACTGAAATACTCCTGTAATGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
* *
46550607 TACCAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
**
46550634 TACTAAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
**
46550661 TATTGAAATACCCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
**
46550688 TACCGAAATACCCCTGTCGGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
* * *
46550715 TACTGAAATACCCCTGTAGGGTAGTAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
* * *
46550742 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAAGGTAGAAT
* *
46550769 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAAGGTAGAAT
46550796 TA
1 TA
46550798 TCGAGATATC
Statistics
Matches: 214, Mismatches: 31, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 214 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAAGGTAGAAT
Found at i:46551186 original size:22 final size:22
Alignment explanation
Indices: 46551154--46551212 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
46551144 CCCGTTATCG
*
46551154 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
46551176 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
46551198 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
46551213 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:46551236 original size:27 final size:27
Alignment explanation
Indices: 46551196--46551247 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
46551186 GCCATCTTGA
*
46551196 CTATGGCTTCGTGCCAAACGTATTTAC
1 CTATGGCTTCGTGCCAAACATATTTAC
*
46551223 CTATGGCTAT-GTGCCTAACATATTT
1 CTATGGCT-TCGTGCCAAACATATTT
46551248 GTTGACGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (27 bp):
CTATGGCTTCGTGCCAAACATATTTAC
Found at i:46551399 original size:27 final size:26
Alignment explanation
Indices: 46551369--46551503 Score: 126
Period size: 27 Copynumber: 5.0 Consensus size: 26
46551359 TATTCTGTTA
* *
46551369 AGTGGCTTTGCCACATTATCTGATTCT
1 AGTGGCTCTGCCACAATATCTG-TTCT
46551396 AGTGGCTCTGCCACAATATTCTGTTTCT
1 AGTGGCTCTGCCACAATA-TCTG-TTCT
* * * *
46551424 GGCGACTATGCCACAAATATCTGTTCT
1 AGTGGCTCTGCCAC-AATATCTGTTCT
*
46551451 GGTGGCTCTGCCACAATATCTGTATCT
1 AGTGGCTCTGCCACAATATCTGT-TCT
* * * *
46551478 GGTGACTCTGTCACAATATCTATTCT
1 AGTGGCTCTGCCACAATATCTGTTCT
46551504 GGCAGCCATG
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 12 0.13
27 54 0.59
28 22 0.24
29 4 0.04
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
AGTGGCTCTGCCACAATATCTGTTCT
Found at i:46551456 original size:55 final size:53
Alignment explanation
Indices: 46551377--46551505 Score: 168
Period size: 55 Copynumber: 2.4 Consensus size: 53
46551367 TAAGTGGCTT
* * *
46551377 TGCCACATTATCTGATTCTAGTGGCTCTGCCACAATATTCTGTTTCTGGCGACTA
1 TGCCACAATATCTG-TTCTGGTGGCTCTGCCACAATA-TCTGTATCTGGCGACTA
* *
46551432 TGCCACAAATATCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-AATATCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTGGCGACTA
* *
46551486 TGTCACAATATCTATTCTGG
1 TGCCACAATATCTGTTCTGG
46551506 CAGCCATGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 13 0.20
54 19 0.29
55 27 0.41
56 7 0.11
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (53 bp):
TGCCACAATATCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTGGCGACTA
Found at i:46551633 original size:6 final size:6
Alignment explanation
Indices: 46551623--46551747 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
46551613 TTGCATTCAC
* * * *
46551623 ATTCTG GTTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
46551673 ATTCTG ATTCTG ATTTTA ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
46551722 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
46551748 AATGTTTCTT
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
5 6 0.07
6 72 0.79
7 9 0.10
8 4 0.04
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:46551658 original size:25 final size:25
Alignment explanation
Indices: 46551630--46551687 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
46551620 CACATTCTGG
* * *
46551630 TTCTGATTCTGTTACCTGATACTGA
1 TTCTGATTCTATCACCTAATACTGA
*
46551655 TTCTGATTCTATCACCTAATTCTGA
1 TTCTGATTCTATCACCTAATACTGA
46551680 TTCTGATT
1 TTCTGATT
46551688 TTAATTCTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.47
Consensus pattern (25 bp):
TTCTGATTCTATCACCTAATACTGA
Found at i:46551676 original size:19 final size:19
Alignment explanation
Indices: 46551654--46551720 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
46551644 CCTGATACTG
46551654 ATTCTGATTCTATCACCTA
1 ATTCTGATTCTATCACCTA
**
46551673 ATTCTGATTCTGAT--TTTA
1 ATTCTGATTCT-ATCACCTA
* *
46551691 ATTCTGATTCTGTCACCTG
1 ATTCTGATTCTATCACCTA
46551710 ATTCTGATTCT
1 ATTCTGATTCT
46551721 GATTCTCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.03
18 13 0.33
19 23 0.59
20 2 0.05
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (19 bp):
ATTCTGATTCTATCACCTA
Found at i:46551686 original size:37 final size:37
Alignment explanation
Indices: 46551645--46551739 Score: 127
Period size: 37 Copynumber: 2.6 Consensus size: 37
46551635 ATTCTGTTAC
* *
46551645 CTGATACTGATTCTGATTCTATCACCTAATTCTGATT
1 CTGATTCTAATTCTGATTCTATCACCTAATTCTGATT
* * *
46551682 CTGATTTTAATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTAATTCTGATTCTATCACCTAATTCTGATT
* *
46551719 CTGATTCTCATTTTGATTCTA
1 CTGATTCTAATTCTGATTCTA
46551740 GTTCTGATAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (37 bp):
CTGATTCTAATTCTGATTCTATCACCTAATTCTGATT
Found at i:46552985 original size:118 final size:118
Alignment explanation
Indices: 46552773--46553007 Score: 364
Period size: 118 Copynumber: 2.0 Consensus size: 118
46552763 CTACTTATTT
46552773 ATAAGCTTATATACAAACTTTGTAACTTCTTCAAATTTAAGCTCATAATATACATGTACATACCT
1 ATAAGCTTATATACAAACTTTGTAACTTCTTCAAATTTAAGCTCATAATATACATGTACATACCT
* *
46552838 GTACCAATCCTTAACAGGTTATACATACACAGAATACTATTGAATACTCAATA
66 ATACCAATCCTTAACAGGTTATACATACACAGAATACCATTGAATACTCAATA
* *
46552891 ATAAGCTTATATACAAACTTTGTAACTTCTTCGAATTTAAGCTCATAATATACATTTACATACCT
1 ATAAGCTTATATACAAACTTTGTAACTTCTTCAAATTTAAGCTCATAATATACATGTACATACCT
* * * * * *
46552956 ATGCTAATCCTTAATAGGTTCATAC-TACACGGAATACCGTTGAATGCTCAAT
66 ATACCAATCCTTAACAGGTT-ATACATACACAGAATACCATTGAATACTCAAT
46553008 GTGTCTCACA
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 102 0.96
119 4 0.04
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (118 bp):
ATAAGCTTATATACAAACTTTGTAACTTCTTCAAATTTAAGCTCATAATATACATGTACATACCT
ATACCAATCCTTAACAGGTTATACATACACAGAATACCATTGAATACTCAATA
Found at i:46553105 original size:40 final size:40
Alignment explanation
Indices: 46553013--46553109 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
46553003 TCAATGTGTC
**
46553013 TCACACACTAAGTGCTGTACATAGCCGAAGCCATCTCAAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCCATCTCAAA
** * * * * **
46553053 TTGCACAGTAAGTGCCATATATAGCCGAAGCTATGTTGAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCCATCTCAAA
46553093 TCACACACTAAGTGCCA
1 TCACACACTAAGTGCCA
46553110 CAAATAGTCA
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.23
Consensus pattern (40 bp):
TCACACACTAAGTGCCATACATAGCCGAAGCCATCTCAAA
Found at i:46557663 original size:40 final size:39
Alignment explanation
Indices: 46557498--46557681 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
46557488 AAATTGAATG
* * *
46557498 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
46557538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
46557578 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
46557618 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
46557657 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
46557682 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:46557706 original size:80 final size:81
Alignment explanation
Indices: 46557538--46557726 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
46557528 GCTGGAAATT
* * * *
46557538 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
46557603 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
46557619 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
46557682 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
46557698 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
46557727 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:46560264 original size:46 final size:46
Alignment explanation
Indices: 46560214--46560386 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
46560204 TGGTTGAGCA
*
46560214 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
* * *
46560260 TCCGAACTCGTTGAGTTGAG-TCTGAGTT---TGA-GAGATGTAACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTTC-GAGTTCACTTATG-GATGCAA--A--TG
* *
46560307 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
* *
46560353 TCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTA
46560387 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 1 0.01
43 7 0.07
45 3 0.03
46 56 0.54
47 26 0.25
48 2 0.02
50 8 0.08
51 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
Found at i:46562849 original size:34 final size:33
Alignment explanation
Indices: 46562811--46562901 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 33
46562801 ACTGTACTAA
46562811 AATGGGCTAAGGCCCACACTGTTATTACTACTG
1 AATGGGCTAAGGCCCACACTGTTATTACTACTG
** *
46562844 TAATGGGCTAAGGCCCACACTGACATTGCTACTG
1 -AATGGGCTAAGGCCCACACTGTTATTACTACTG
* * *
46562878 ACATGGGCTTAGGCCTAGACTGTT
1 A-ATGGGCTAAGGCCCACACTGTT
46562902 CAACACTGTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
33 1 0.02
34 47 0.98
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (33 bp):
AATGGGCTAAGGCCCACACTGTTATTACTACTG
Found at i:46564142 original size:34 final size:34
Alignment explanation
Indices: 46564104--46564169 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
46564094 GTAACAGTCC
46564104 AGTAACAGT-TAGGGCCTTGGCCCAGTACAATATT
1 AGTAACAGTGT-GGGCCTTGGCCCAGTACAATATT
* *
46564138 AGTAACAGTGTGGGCTTTGGCCCATTACAATA
1 AGTAACAGTGTGGGCCTTGGCCCAGTACAATA
46564170 ACAGTAATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 28 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (34 bp):
AGTAACAGTGTGGGCCTTGGCCCAGTACAATATT
Found at i:46564176 original size:34 final size:34
Alignment explanation
Indices: 46564103--46564176 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
46564093 AGTAACAGTC
*
46564103 CAGTAACAGTTAGGGCCTTGGCCCAGTACAATAT
1 CAGTAACAGTTAGGGCCTTGGCCCAGTACAATAA
* * *
46564137 TAGTAACAGTGT-GGGCTTTGGCCCATTACAATAA
1 CAGTAACAGT-TAGGGCCTTGGCCCAGTACAATAA
46564171 CAGTAA
1 CAGTAA
46564177 TAGAAATGCA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (34 bp):
CAGTAACAGTTAGGGCCTTGGCCCAGTACAATAA
Found at i:46564474 original size:27 final size:27
Alignment explanation
Indices: 46564441--46564492 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
46564431 GTCATACAAA
46564441 TCATAGGGGCAT-ATCAGTCATTTTACC
1 TCATAGGGGCATAAT-AGTCATTTTACC
*
46564468 TCATAGGGGTATAATAGTCATTTTA
1 TCATAGGGGCATAATAGTCATTTTA
46564493 TTAGTATGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (27 bp):
TCATAGGGGCATAATAGTCATTTTACC
Found at i:46566736 original size:40 final size:40
Alignment explanation
Indices: 46566674--46566764 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
46566664 TACACATTCA
*
46566674 AATGCCTTCGGGACATAGCCCGG-TTACAGTAGCTCGCACG
1 AATGCCTTCGGGACATAACCCGGATT-CAGTAGCTCGCACG
* * *
46566714 AATGCCTTCGGGAC-TCAACCCGGATTTAGTAGCTTGCTCG
1 AATGCCTTCGGGACAT-AACCCGGATTCAGTAGCTCGCACG
*
46566754 AAAGCCTTCGG
1 AATGCCTTCGG
46566765 ATCTTAGTCC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.02
40 41 0.93
41 2 0.05
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTCAGTAGCTCGCACG
Found at i:46566777 original size:40 final size:40
Alignment explanation
Indices: 46566733--46566823 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
46566723 GGGACTCAAC
* * *
46566733 CCGGATTTAGTAGCTTGC-TCGAAAGCCTTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCAT-GAAAGCCGTCGGATCTTAGT
* *
46566773 CCGGATTTAGTAACTCGCATGTATGCCGTCGGATCTTAGT
1 CCGGATTTAGTAACTCGCATGAAAGCCGTCGGATCTTAGT
46566813 CCGGATTTAGT
1 CCGGATTTAGT
46566824 CACTTAGCAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
40 44 0.98
41 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.33
Consensus pattern (40 bp):
CCGGATTTAGTAACTCGCATGAAAGCCGTCGGATCTTAGT
Found at i:46573568 original size:16 final size:16
Alignment explanation
Indices: 46573547--46573605 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
46573537 GTAGATCGGA
46573547 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
* *
46573563 AAAAGCTGGAATACCG
1 AAAAGCTGAAATGCCG
* *
46573579 AAAAGTTGAAATGACG
1 AAAAGCTGAAATGCCG
*
46573595 AAAAGCCGAAA
1 AAAAGCTGAAA
46573606 GTTTGGCTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.49, C:0.15, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:46573856 original size:29 final size:29
Alignment explanation
Indices: 46573814--46573938 Score: 137
Period size: 29 Copynumber: 4.3 Consensus size: 29
46573804 GAAAGCATGT
*
46573814 GTATGAATGTGATTCGGGCCTAATGGGCC
1 GTATGAATGTGATTTGGGCCTAATGGGCC
46573843 GTATGAATGTGATTTGGGCCTAATGGGCC
1 GTATGAATGTGATTTGGGCCTAATGGGCC
* * * * *
46573872 ATACGAATATGATTTGGACTTAATGGG-C
1 GTATGAATGTGATTTGGGCCTAATGGGCC
* *
46573900 GATATGAATGAGA-TTGGGCCTAGTGGGCC
1 G-TATGAATGTGATTTGGGCCTAATGGGCC
* *
46573929 ATATGCATGT
1 GTATGAATGT
46573939 ATGCAGACTT
Statistics
Matches: 78, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
28 19 0.24
29 59 0.76
ACGTcount: A:0.25, C:0.14, G:0.32, T:0.30
Consensus pattern (29 bp):
GTATGAATGTGATTTGGGCCTAATGGGCC
Found at i:46578167 original size:16 final size:16
Alignment explanation
Indices: 46578146--46578198 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
46578136 GTAGATCGGC
46578146 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
* *
46578162 AAAAGCT-AGAATTCCA
1 AAAAGCTGA-AATGCCG
*
46578178 AAAAGTTGAAATGCCG
1 AAAAGCTGAAATGCCG
*
46578194 TAAAG
1 AAAAG
46578199 TCGAAAGTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:46578455 original size:29 final size:29
Alignment explanation
Indices: 46578414--46578537 Score: 169
Period size: 29 Copynumber: 4.3 Consensus size: 29
46578404 AAAGCATGTG
* *
46578414 TATGAATGTGATTCGGGCCTAATGGGCCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
46578443 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * *
46578472 TACGAATATGATTTGGACCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* *
46578501 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
46578529 TATGCATGT
1 TATGAATGT
46578538 ATGCAGACTT
Statistics
Matches: 83, Mismatches: 12, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 22 0.27
29 61 0.73
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:46579034 original size:36 final size:36
Alignment explanation
Indices: 46578982--46579056 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
46578972 ACTCCCTCTT
46578982 TCTACTTCGATCGATTCTAGTGTAAGTGTTTTGCTC
1 TCTACTTCGATCGATTCTAGTGTAAGTGTTTTGCTC
* *
46579018 TCTACTTCGATTGATTCTAGTGTAAGTGTTTTTCTC
1 TCTACTTCGATCGATTCTAGTGTAAGTGTTTTGCTC
46579054 TCT
1 TCT
46579057 CAATCGATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.16, C:0.19, G:0.17, T:0.48
Consensus pattern (36 bp):
TCTACTTCGATCGATTCTAGTGTAAGTGTTTTGCTC
Found at i:46579064 original size:36 final size:36
Alignment explanation
Indices: 46578982--46579065 Score: 116
Period size: 36 Copynumber: 2.3 Consensus size: 36
46578972 ACTCCCTCTT
* *
46578982 TCTACTTCGATCGATTCTAGTGTAAGTGTTTTGCTC
1 TCTACATCGATTGATTCTAGTGTAAGTGTTTTGCTC
* *
46579018 TCTACTTCGATTGATTCTAGTGTAAGTGTTTTTCTC
1 TCTACATCGATTGATTCTAGTGTAAGTGTTTTGCTC
46579054 TCT-CAATCGATT
1 TCTAC-ATCGATT
46579066 TTGCTAGTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 1 0.02
36 43 0.98
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (36 bp):
TCTACATCGATTGATTCTAGTGTAAGTGTTTTGCTC
Found at i:46579646 original size:29 final size:29
Alignment explanation
Indices: 46579605--46579729 Score: 162
Period size: 29 Copynumber: 4.3 Consensus size: 29
46579595 GAAAGCATGT
*
46579605 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
46579634 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
46579663 ATACGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * **
46579692 ATATGAATGAGA-TTAGGCCTTGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
46579720 ATATGCATGT
1 ATATGAATGT
46579730 ATGTAGACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 21 0.25
29 62 0.75
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:46582080 original size:31 final size:31
Alignment explanation
Indices: 46581996--46582080 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
46581986 TCAATCTCAA
*
46581996 CATAT-ACTGGGCCGAAGCCTTTGCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
46582026 CATGTCACTAGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
46582057 CCTATCACTGGGCTGAAGCCTTTT
1 CATATCACTGGGCCGAAGCCTTTT
46582081 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:46582334 original size:25 final size:25
Alignment explanation
Indices: 46582302--46582371 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
46582292 CTCTTTTAAT
* *
46582302 AACTGGGGCAAAGCTCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
46582327 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
46582352 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
46582372 GCACTTCCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:46582435 original size:11 final size:11
Alignment explanation
Indices: 46582419--46582467 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
46582409 TATATGAAGT
46582419 TATCATGTGCA
1 TATCATGTGCA
*
46582430 TATCA--TACA
1 TATCATGTGCA
46582439 TATCATGTGCA
1 TATCATGTGCA
46582450 TATCATGT-CA
1 TATCATGTGCA
*
46582460 AATCATGT
1 TATCATGT
46582468 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:46590002 original size:31 final size:31
Alignment explanation
Indices: 46589941--46590025 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 31
46589931 TCAATCTCAA
* * *
46589941 CATAT-ACTAGGCCAAAGAATTTGCATTATT
1 CATATCACTAGGCCGAAGCATTTTCATTATT
* *
46589971 CATGTCACTGGGCCGAAGCATTTTCATTATT
1 CATATCACTAGGCCGAAGCATTTTCATTATT
* * *
46590002 CCTATCACTAGGCTGAAGCCTTTT
1 CATATCACTAGGCCGAAGCATTTT
46590026 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 4 0.09
31 40 0.91
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCATTTTCATTATT
Found at i:46590264 original size:24 final size:23
Alignment explanation
Indices: 46590220--46590290 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 23
46590210 GCTTTATCAT
**
46590220 ATAACTGGAGGCCTAGCCTTTTTA
1 ATAACTGG-GGCAAAGCCTTTTTA
*
46590244 ATAACTGGGGCAAAGCTCTTTTTG
1 ATAACTGGGGCAAAGC-CTTTTTA
*
46590268 ATAAACTGGGGCAAAGCCCTTTT
1 AT-AACTGGGGCAAAGCCTTTTT
46590291 CGATAAACTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 6 0.15
24 21 0.51
25 14 0.34
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCTTTTTA
Found at i:46590274 original size:25 final size:25
Alignment explanation
Indices: 46590236--46590315 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
46590226 GGAGGCCTAG
*
46590236 CCTTTTTAAT-AACTGGGGCAAAGC
1 CCTTTTTGATAAACTGGGGCAAAGC
*
46590260 TCTTTTTGATAAACTGGGGCAAAGC
1 CCTTTTTGATAAACTGGGGCAAAGC
* * *
46590285 CCTTTTCGATAAACTAGGGCATAGC
1 CCTTTTTGATAAACTGGGGCAAAGC
46590310 CCTTTT
1 CCTTTT
46590316 GCACTTTCTC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
24 8 0.16
25 41 0.84
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (25 bp):
CCTTTTTGATAAACTGGGGCAAAGC
Found at i:46590379 original size:11 final size:11
Alignment explanation
Indices: 46590363--46590411 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
46590353 TATATGAATT
46590363 TATCATGTGCA
1 TATCATGTGCA
*
46590374 TATCA--TACA
1 TATCATGTGCA
46590383 TATCATGTGCA
1 TATCATGTGCA
46590394 TATCATGT-CA
1 TATCATGTGCA
*
46590404 AATCATGT
1 TATCATGT
46590412 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:46591258 original size:9 final size:9
Alignment explanation
Indices: 46591244--46591270 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
46591234 ATTTACTCCA
46591244 CCATAAAAC
1 CCATAAAAC
46591253 CCATAAAAC
1 CCATAAAAC
46591262 CCATAAAAC
1 CCATAAAAC
46591271 AAATGAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.33, G:0.00, T:0.11
Consensus pattern (9 bp):
CCATAAAAC
Found at i:46593062 original size:16 final size:19
Alignment explanation
Indices: 46593041--46593077 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46593031 GCAGTTCTAC
46593041 TTAATT-TAC-TC-ACTAT
1 TTAATTCTACTTCTACTAT
46593057 TTAATTCTACTTCTACTAT
1 TTAATTCTACTTCTACTAT
46593076 TT
1 TT
46593078 TTAGTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 3 0.17
18 2 0.11
19 7 0.39
ACGTcount: A:0.27, C:0.19, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTCTACTTCTACTAT
Found at i:46593961 original size:29 final size:29
Alignment explanation
Indices: 46593928--46594030 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
46593918 CCTCCGAACT
** * * *
46593928 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
46593957 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46593986 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46594015 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
46594031 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:46595325 original size:13 final size:13
Alignment explanation
Indices: 46595307--46595339 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
46595297 AAGATGAGCA
*
46595307 TTCTTTTTTTTTT
1 TTCTTTTTTTTTC
46595320 TTCTTTTTTTTTC
1 TTCTTTTTTTTTC
46595333 TTCTTTT
1 TTCTTTT
46595340 ACTAACATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTCTTTTTTTTTC
Found at i:46614904 original size:16 final size:17
Alignment explanation
Indices: 46614868--46614908 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
46614858 AATTTAACAT
*
46614868 AATTCAATTAATTCACTA
1 AATTTAATTAATT-ACTA
46614886 AATTTAATTAATT-CTA
1 AATTTAATTAATTACTA
46614902 AATTTAA
1 AATTTAA
46614909 CTTTCAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 10 0.45
18 12 0.55
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTAATTAATTACTA
Found at i:46619264 original size:18 final size:18
Alignment explanation
Indices: 46619224--46619266 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
46619214 AATTTAACAT
*
46619224 AATTCAATTAATTCACTA
1 AATTTAATTAATTCACTA
46619242 AATTTAATTAATTCACTA
1 AATTTAATTAATTCACTA
46619260 AATTTAA
1 AATTTAA
46619267 CTTTCAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTAATTAATTCACTA
Found at i:46620869 original size:34 final size:34
Alignment explanation
Indices: 46620808--46620872 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
46620798 ATAACAGTTA
*
46620808 GGGCCTTAGCCCAATACAGTCTCAGTAATAGTGT
1 GGGCCTTAGCCCAATACAGTATCAGTAATAGTGT
* *
46620842 GGGCTTTAGCCCATTACAGTAAT-AGTAATAG
1 GGGCCTTAGCCCAATACAGT-ATCAGTAATAG
46620873 AAATGCAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 26 0.96
35 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAGTATCAGTAATAGTGT
Found at i:46620933 original size:22 final size:23
Alignment explanation
Indices: 46620894--46620936 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
46620884 GAAGTCCTAC
*
46620894 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
46620917 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
46620937 TATAGGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:46623155 original size:47 final size:47
Alignment explanation
Indices: 46623094--46623222 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
46623084 TTTGCATCCT
* * *
46623094 AAGTGTCAATATCATGGCCTAAAGTCAAATCAATAAAGCTCGCA-CCG
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAA-CTCGCACCCG
* * * *
46623141 AAGTGCCAACATCATGGCCCGAAGCCAAATCAATTTAACTCGCACCCT
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAA-TAAACTCGCACCCG
*
46623189 AAGTGCCAATATTATGGCCCAAAGCCAAATCAAT
1 AAGTGCCAATATCATGGCCCAAAGCCAAATCAAT
46623223 GTAACTCCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
47 35 0.50
48 35 0.50
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.20
Consensus pattern (47 bp):
AAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAACTCGCACCCG
Found at i:46623214 original size:48 final size:47
Alignment explanation
Indices: 46623091--46623229 Score: 172
Period size: 48 Copynumber: 2.9 Consensus size: 47
46623081 AGTTTTGCAT
* * * *
46623091 CCTAAGTGTCAATATCATGGCCTAAAGTCAAATCAA-TAAAGCTCGCA
1 CCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATTTAA-CTCGCA
* * *
46623138 CCGAAGTGCCAACATCATGGCCCGAAGCCAAATCAATTTAACTCGCA
1 CCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATTTAACTCGCA
* *
46623185 CCCTAAGTGCCAATATTATGGCCCAAAGCCAAATCAATGTAACTC
1 -CCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATTTAACTC
46623230 CAAATGACAT
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
47 36 0.46
48 42 0.54
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (47 bp):
CCTAAGTGCCAATATCATGGCCCAAAGCCAAATCAATTTAACTCGCA
Found at i:46623798 original size:21 final size:20
Alignment explanation
Indices: 46623770--46623809 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
46623760 CAAAACTTGT
46623770 GTAACTATCATCAAACATTC
1 GTAACTATCATCAAACATTC
*
46623790 GTAATCTATCATCAATCATT
1 GTAA-CTATCATCAAACATT
46623810 AAAATACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.35
Consensus pattern (20 bp):
GTAACTATCATCAAACATTC
Found at i:46625836 original size:16 final size:16
Alignment explanation
Indices: 46625815--46625850 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
46625805 GTCTAAAGAA
46625815 TAGAGCTCCAATCCTG
1 TAGAGCTCCAATCCTG
46625831 TAGAGCTCCAATCCTG
1 TAGAGCTCCAATCCTG
46625847 TAGA
1 TAGA
46625851 AGCCAGTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (16 bp):
TAGAGCTCCAATCCTG
Found at i:46628938 original size:2 final size:2
Alignment explanation
Indices: 46628931--46628957 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
46628921 TCCACATACG
46628931 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
46628958 GGCCCAGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46633393 original size:29 final size:28
Alignment explanation
Indices: 46633359--46633424 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
46633349 TATGGCCCAT
* **
46633359 TCACATTTATGTGGCCCATTAGGCCCAAA
1 TCACATTTATATGG-CCACCAGGCCCAAA
*
46633388 TCACATTCATATGGCCACCAGGCCCAAA
1 TCACATTTATATGGCCACCAGGCCCAAA
46633416 TCACATTTA
1 TCACATTTA
46633425 CAGTCATGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 20 0.62
29 12 0.38
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (28 bp):
TCACATTTATATGGCCACCAGGCCCAAA
Found at i:46633659 original size:16 final size:16
Alignment explanation
Indices: 46633638--46633675 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
46633628 GTAGCCAAAC
46633638 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
46633654 TTTCAGCTTTTCGGCT
1 TTTCAGCTTTTCGGCA
46633670 TTTCAG
1 TTTCAG
46633676 GATTTGCCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.11, C:0.24, G:0.18, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:46635275 original size:66 final size:68
Alignment explanation
Indices: 46635197--46635383 Score: 272
Period size: 71 Copynumber: 2.7 Consensus size: 68
46635187 TAGTACCACT
*
46635197 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
46635259 CACG
65 CACG
*
46635263 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGA
46635328 ATCACG
63 ATCACG
46635334 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46635384 GATACATCTC
Statistics
Matches: 113, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.81
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATC
ACG
Found at i:46635308 original size:71 final size:71
Alignment explanation
Indices: 46635220--46635383 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
46635210 CGATTTGTCT
46635220 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46635285 CTTTCA
66 CTTTCA
*
46635291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46635356 CTTTCA
66 CTTTCA
46635362 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46635384 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46635421 original size:71 final size:70
Alignment explanation
Indices: 46635220--46635417 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
46635210 CGATTTGTCT
* * * *
46635220 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46635285 CTTTCA
65 CTTTCA
* * * *
46635291 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46635356 CTTTCA
65 CTTTCA
* *
46635362 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
46635418 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46642348 original size:66 final size:68
Alignment explanation
Indices: 46642270--46642456 Score: 272
Period size: 71 Copynumber: 2.7 Consensus size: 68
46642260 TAGTACCACT
*
46642270 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAAT
46642332 CACG
65 CACG
*
46642336 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGA
46642401 ATCACG
63 ATCACG
46642407 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46642457 GATACATCTC
Statistics
Matches: 113, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
66 13 0.12
67 6 0.05
68 1 0.01
69 1 0.01
71 92 0.81
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATC
ACG
Found at i:46642381 original size:71 final size:71
Alignment explanation
Indices: 46642293--46642456 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
46642283 CGATTTGTCT
46642293 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46642358 CTTTCA
66 CTTTCA
*
46642364 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46642429 CTTTCA
66 CTTTCA
46642435 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46642457 GATACATCTC
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46642494 original size:71 final size:70
Alignment explanation
Indices: 46642293--46642490 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
46642283 CGATTTGTCT
* * * *
46642293 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46642358 CTTTCA
65 CTTTCA
* * * *
46642364 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46642429 CTTTCA
65 CTTTCA
* *
46642435 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
46642491 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 95 0.80
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46645942 original size:40 final size:40
Alignment explanation
Indices: 46645898--46645989 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
46645888 TGCCTCATGC
* **
46645898 AGCCGAAGCTATACCATTTCACACAGTTAGTGTTATTTAT
1 AGCCGAAGCTATACCATTTCACACACTTAGTCCTATTTAT
*
46645938 AGCCGAAGCTATACCATTTCCCACACTTAGTCCTATTTAT
1 AGCCGAAGCTATACCATTTCACACACTTAGTCCTATTTAT
46645978 AGCCGAAGCTAT
1 AGCCGAAGCTAT
46645990 TTTGAATCTC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (40 bp):
AGCCGAAGCTATACCATTTCACACACTTAGTCCTATTTAT
Found at i:46656493 original size:29 final size:29
Alignment explanation
Indices: 46656431--46656529 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
46656421 ACAGTAAGTC
46656431 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
* *
46656459 CACACACTTAGTGCTATACAGTTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
46656488 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
46656516 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46656530 CAATCTCATT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
28 33 0.51
29 31 0.48
30 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:46658986 original size:40 final size:40
Alignment explanation
Indices: 46658844--46659004 Score: 155
Period size: 40 Copynumber: 4.0 Consensus size: 40
46658834 GGATTCAACT
* * * *
46658844 GGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
* ** * * *
46658884 GGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGCCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
** *
46658924 GG-TATAA-CAACCCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCC
* * *
46658963 GGATATAATCACTAGCATAAATGCCTTCGAGACTTAGCCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
46659003 GG
1 GG
46659005 GTATCATTCA
Statistics
Matches: 96, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
39 30 0.31
40 65 0.68
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:46660968 original size:17 final size:18
Alignment explanation
Indices: 46660931--46660968 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
46660921 CACTTTTTTT
46660931 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
46660950 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
46660967 TT
1 TT
46660969 TTGTTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:46667559 original size:28 final size:29
Alignment explanation
Indices: 46667527--46667626 Score: 161
Period size: 28 Copynumber: 3.5 Consensus size: 29
46667517 TACAGTAAGT
46667527 TCGCACACTTAGTGCT-TA-ATATTCAAAC
1 TCGCACACTTAGTGCTATACA-ATTCAAAC
*
46667555 TCGCACACTTAGTGCTGTACAATTCAAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
46667584 TCGCACACTTAGTGCTATACAATT-AAAC
1 TCGCACACTTAGTGCTATACAATTCAAAC
46667612 TCGCACACTTAGTGC
1 TCGCACACTTAGTGC
46667627 CAATCTCATT
Statistics
Matches: 69, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 35 0.51
29 33 0.48
30 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (29 bp):
TCGCACACTTAGTGCTATACAATTCAAAC
Found at i:46668751 original size:17 final size:18
Alignment explanation
Indices: 46668714--46668751 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
46668704 CACTTTTTTT
46668714 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
46668733 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
46668750 TT
1 TT
46668752 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:46669718 original size:14 final size:13
Alignment explanation
Indices: 46669693--46669726 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
46669683 CTGGGATATT
46669693 AAAACAATAATTA
1 AAAACAATAATTA
46669706 AAAACACATAATTA
1 AAAACA-ATAATTA
*
46669720 AGAACAA
1 AAAACAA
46669727 GTTAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAACAATAATTA
Found at i:46670969 original size:14 final size:15
Alignment explanation
Indices: 46670952--46670981 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
46670942 GTATACATAG
46670952 TGTTTTTTT-TTTTT
1 TGTTTTTTTGTTTTT
46670966 TGTTTTTTTGTTTTT
1 TGTTTTTTTGTTTTT
46670981 T
1 T
46670982 TTAAAAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
TGTTTTTTTGTTTTT
Found at i:46670971 original size:8 final size:8
Alignment explanation
Indices: 46670954--46670982 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
46670944 ATACATAGTG
46670954 TTTTTT-T
1 TTTTTTGT
46670961 TTTTTTGT
1 TTTTTTGT
46670969 TTTTTTGT
1 TTTTTTGT
46670977 TTTTTT
1 TTTTTT
46670983 TAAAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 6 0.29
8 15 0.71
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (8 bp):
TTTTTTGT
Found at i:46673115 original size:31 final size:31
Alignment explanation
Indices: 46673075--46673251 Score: 248
Period size: 31 Copynumber: 5.7 Consensus size: 31
46673065 TTAATCTTGA
* *
46673075 CATAT-ACTGGACCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
**
46673105 CATATCACTGGATCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
46673136 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
46673167 CATATCATTGGGCCGGAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
**
46673198 CATATCACTGGGCTAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
46673229 CGTATCACTGGGCCTAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
46673252 AATGTAAATG
Statistics
Matches: 131, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 5 0.04
31 126 0.96
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:46673334 original size:42 final size:42
Alignment explanation
Indices: 46673277--46673366 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
46673267 GCCCTTAGGC
* *
46673277 CCATTTCAATGTCACATGTAATGTCAATGGATGTATGCAAGA
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
*
46673319 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
46673361 CCATTT
1 CCATTT
46673367 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
Found at i:46673528 original size:24 final size:24
Alignment explanation
Indices: 46673501--46673584 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
46673491 CTGGAGGCCT
46673501 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
46673525 AGCCCTTTCTGATAAACTGGGGCAA
1 AGCCCTTT-TAATAAACTGGGGCAA
** * *
46673550 AGCCCTTTTCGGTAAATTGGGGCAG
1 AGCCCTTTT-AATAAACTGGGGCAA
46673575 AGCCCTTTTA
1 AGCCCTTTTA
46673585 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
23 4 0.08
24 8 0.15
25 40 0.77
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:46673542 original size:25 final size:25
Alignment explanation
Indices: 46673514--46673583 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
46673504 CTCTTTTAAT
46673514 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
46673539 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
46673564 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
46673584 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:46674539 original size:27 final size:27
Alignment explanation
Indices: 46674486--46674749 Score: 192
Period size: 27 Copynumber: 9.7 Consensus size: 27
46674476 TTTCATCCTA
* * * *
46674486 TAAGGGTGTTTTGGTAAATCTACAAAC
1 TAAGGGTATTTCGGTAATTTTACAAAC
* **
46674513 TAAGGGTATTTCAGTAATTTTGTAAAC
1 TAAGGGTATTTCGGTAATTTTACAAAC
* * ** * *
46674540 CAATGGTATTTCTATAATTTCTAAAAAGT
1 TAAGGGTATTTCGGTAATTT-TACAAA-C
**
46674569 TAAGGGTATTTCTGG-AATTTTGTAAA-
1 TAAGGGTATTTC-GGTAATTTTACAAAC
* * *
46674595 TCATGGGTATTTTGGTAATTTTACAAAT
1 T-AAGGGTATTTCGGTAATTTTACAAAC
* *
46674623 TGAGGGTATTTCGGTAATTTCACAAAC
1 TAAGGGTATTTCGGTAATTTTACAAAC
* * *
46674650 -CAGTTGTATTTCAGTAATTTTACAAAC
1 TAAG-GGTATTTCGGTAATTTTACAAAC
* *
46674677 TAGGGGTATTTTGGTAATTTTACAAAC
1 TAAGGGTATTTCGGTAATTTTACAAAC
* * *
46674704 TAGGGGTATTTTGGTTATTTTACAAAC
1 TAAGGGTATTTCGGTAATTTTACAAAC
* *
46674731 TAGGGGTATTTTGGTAATT
1 TAAGGGTATTTCGGTAATT
46674750 CTATCCTACA
Statistics
Matches: 189, Mismatches: 40, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
26 5 0.03
27 159 0.84
28 10 0.05
29 15 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAGGGTATTTCGGTAATTTTACAAAC
Found at i:46674762 original size:27 final size:27
Alignment explanation
Indices: 46674599--46674749 Score: 205
Period size: 27 Copynumber: 5.6 Consensus size: 27
46674589 TGTAAATCAT
*
46674599 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
46674625 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
** **
46674653 TTGTATTTCAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
46674680 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
*
46674707 GGGTATTTTGGTTATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
46674734 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
46674750 CTATCCTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 107 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:46674768 original size:81 final size:81
Alignment explanation
Indices: 46674602--46674791 Score: 188
Period size: 81 Copynumber: 2.4 Consensus size: 81
46674592 AAATCATGGG
* **
46674602 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTTGTATTTCAGTAA
1 TATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGTAA
* *
46674667 TTTTACAAACTAGGGG
66 TTCTACAAACTAGGGA
* * * * **
46674683 TATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTTATTTTACAAACTAGGGGTATTTTGGTA
1 TATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGTA
**
46674747 ATTCTATCCTAC-AGGGA
65 ATTCTA-CAAACTAGGGA
** * *
46674764 TATTTCAGTAATTTCAC-AATCGAGGGTA
1 TATTTTGGTAATTTTACAAATAGAGGGTA
46674792 AAACGGTAAT
Statistics
Matches: 89, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
79 2 0.02
80 7 0.08
81 75 0.84
82 5 0.06
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.40
Consensus pattern (81 bp):
TATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCAGGGGTATTTCAGTAA
TTCTACAAACTAGGGA
Found at i:46674918 original size:27 final size:27
Alignment explanation
Indices: 46674781--46674910 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
46674771 GTAATTTCAC
*
46674781 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
46674808 GA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* * *
46674835 AATTGAGGGTAAAATTGTTATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * *
46674862 AATCGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
46674889 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAATGGTAATT
46674911 CTACAAATTG
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 85 0.99
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.32
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:46678311 original size:20 final size:20
Alignment explanation
Indices: 46678286--46678328 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
46678276 GGGAATAATC
46678286 GAAGACGAATGGCATCATCA
1 GAAGACGAATGGCATCATCA
46678306 GAAGACGAATGGCATCATCA
1 GAAGACGAATGGCATCATCA
46678326 GAA
1 GAA
46678329 ATGCCATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.26, T:0.14
Consensus pattern (20 bp):
GAAGACGAATGGCATCATCA
Found at i:46678657 original size:39 final size:39
Alignment explanation
Indices: 46678603--46678683 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
46678593 TTTTCAGCCA
* *
46678603 TCTCTTTGATTGGGGGTTGAGTTTCGTATTCTTGCTCGT
1 TCTCTTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
*
46678642 TCTCTTTTG-TTGGGGGTTGAGTATCGTCTTCTTACTCGT
1 TCTC-TTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
46678681 TCT
1 TCT
46678684 TTGTGTATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 34 0.89
40 4 0.11
ACGTcount: A:0.07, C:0.17, G:0.26, T:0.49
Consensus pattern (39 bp):
TCTCTTTGATTGGGGGTTGAGTATCGTATTCTTACTCGT
Found at i:46687389 original size:79 final size:79
Alignment explanation
Indices: 46687241--46687463 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
46687231 TCGAATGATG
* * * * *
46687241 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCA-T
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
46687304 TGTGCGAGTTACTAAA
64 TATGCGAGTTACTAAA
* *
46687320 TCCGGACTAAGAT-CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAG-TCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
46687384 ATGCGAGTTACTAAA
65 ATGCGAGTTACTAAA
* *
46687399 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
46687463 T
64 T
46687464 GAACGAGTAG
Statistics
Matches: 126, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
77 1 0.01
78 27 0.21
79 58 0.46
80 38 0.30
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTA
TGCGAGTTACTAAA
Found at i:46687463 original size:40 final size:40
Alignment explanation
Indices: 46687241--46687464 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
46687231 TCGAATGATG
* * *
46687241 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
46687281 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46687320 TCCGGACTAAGAT-CCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46687359 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46687399 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46687440 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46687465 AACGAGTAGC
Statistics
Matches: 169, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 65 0.38
40 100 0.59
41 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46695248 original size:40 final size:40
Alignment explanation
Indices: 46695016--46695241 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
46695006 TCGAATGATG
* * *
46695016 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46695056 TCCAGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46695096 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46695136 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46695176 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46695217 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46695242 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 158 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46700624 original size:40 final size:39
Alignment explanation
Indices: 46700497--46700626 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
46700487 ATGCTGGAAA
* *
46700497 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGG-AATTCGTGC-AGTGG
* * * *
46700537 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGAATTCGTGC-AGTGG
* *
46700577 TTCTATCCGGGCTAAGACCCGAAGGTATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGAATTCGTGCA-GTGG
46700617 TTATATCCGG
1 TTATATCCGG
46700627 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGAATTCGTGCAGTGG
Found at i:46703858 original size:3 final size:3
Alignment explanation
Indices: 46703850--46703876 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
46703840 TCAGAGCTAC
46703850 TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA
46703877 GCGAGCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:46708813 original size:15 final size:15
Alignment explanation
Indices: 46708793--46708822 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46708783 ATTATGAAAG
46708793 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
46708808 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
46708823 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:46711003 original size:4 final size:4
Alignment explanation
Indices: 46710994--46711022 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
46710984 TAGGTGTATT
46710994 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
46711023 ATATATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:46711240 original size:263 final size:262
Alignment explanation
Indices: 46710770--46711282 Score: 855
Period size: 263 Copynumber: 2.0 Consensus size: 262
46710760 AGTAACCTTG
* * * * * * *
46710770 AGGTTTGGAGTTTAAGTGGAGGCGCGCGCAGAGGGAGAATTTAATTTTTCTATTCAAGTGCTGTA
1 AGGTTTGGAGTTCAAGTGGAGGCACGCGCAAAGGGAGAATTTAATTGTGCTACTCAAGTGCTATA
46710835 CAGTGGAAGCAATTTGAATGCAATTCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATG
66 CAGTGGAAGCAATTTGAATGCAATTCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATG
* *
46710900 AGGATTAAGTGTAAATATGATGGTGATAAAATTGTAGAATTTGAAGGGAAATTATCTTGACGAGT
131 AGGATTAAGGGTAAATATGATGGTGATAAAATTGGAGAATTTGAAGGGAAATTATCTTGACGAGT
* * * * *
46710965 TTAAGTCGATTGAGGAGTGTAGGTGTATTTTTATTTATTTATTTATTTATTTATTTATATATATG
196 TTAAGCCGATTGAGGAGTGCAGGTGTA-TTTTATTTATTTATATATATATATATTTATATATATG
46711030 TTT
260 TTT
*
46711033 AGGTTTGGAGTTCGAGTGGAGGCACGCGCAAAGGGAGAATTTAATTGTGCTACTCAAGTGCTATA
1 AGGTTTGGAGTTCAAGTGGAGGCACGCGCAAAGGGAGAATTTAATTGTGCTACTCAAGTGCTATA
*
46711098 CGGTGGAAGCAATTTGAATGCAATTCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATG
66 CAGTGGAAGCAATTTGAATGCAATTCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATG
* *
46711163 AGGGTTAAGGGTAAATATGATGGTGATAAAATTGGAGAATTTGAAGGGAAATTATCTTGATGAGT
131 AGGATTAAGGGTAAATATGATGGTGATAAAATTGGAGAATTTGAAGGGAAATTATCTTGACGAGT
46711228 TTAAGCCGATTGAGGAGTGCAGGTGTATTTTATTTATTTATATATATATATATTT
196 TTAAGCCGATTGAGGAGTGCAGGTGTATTTTATTTATTTATATATATATATATTT
46711283 TTAGTATAAA
Statistics
Matches: 232, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
262 25 0.11
263 207 0.89
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (262 bp):
AGGTTTGGAGTTCAAGTGGAGGCACGCGCAAAGGGAGAATTTAATTGTGCTACTCAAGTGCTATA
CAGTGGAAGCAATTTGAATGCAATTCAAATTGGAATTTTTGGCTAAAATCAAGGGGATTAGGATG
AGGATTAAGGGTAAATATGATGGTGATAAAATTGGAGAATTTGAAGGGAAATTATCTTGACGAGT
TTAAGCCGATTGAGGAGTGCAGGTGTATTTTATTTATTTATATATATATATATTTATATATATGT
TT
Done.