Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 152 of 318
Found at i:46712380 original size:28 final size:28
Alignment explanation
Indices: 46712296--46712385 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
46712286 TAAGCATGAC
* *
46712296 TATAAATGTGAATTGGGCCT-GATGGGTCG
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* *
46712325 TATAAATGTGATTTGGGCCTAATAGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
46712354 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
46712382 TATA
1 TATA
46712386 CAAGTACGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 20 0.38
29 33 0.62
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:46714802 original size:46 final size:45
Alignment explanation
Indices: 46714735--46714905 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
46714725 AACCCGCCCC
*
46714735 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
46714781 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * *
46714829 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
46714873 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
46714906 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.05
44 3 0.03
45 28 0.26
46 32 0.30
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:46714898 original size:92 final size:93
Alignment explanation
Indices: 46714740--46714909 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
46714730 GCCCCTAAGT
* *
46714740 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46714805 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
46714833 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
46714897 CGAGTTCGGATGC
66 CGAGTTCGGATGC
46714910 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:46729505 original size:24 final size:23
Alignment explanation
Indices: 46729473--46729581 Score: 128
Period size: 24 Copynumber: 4.6 Consensus size: 23
46729463 ACCAAACGTT
* **
46729473 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
46729497 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
46729521 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
46729545 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
46729569 ACACACATAGTGC
1 GCACACATAGTGC
46729582 ATTTGAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.03
24 67 0.89
25 6 0.08
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:46729547 original size:48 final size:48
Alignment explanation
Indices: 46729473--46729581 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
46729463 ACCAAACGTT
* **
46729473 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
46729521 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
*
46729569 ACACACATAGTGC
1 GCACACATAGTGC
46729582 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:46735665 original size:46 final size:46
Alignment explanation
Indices: 46735598--46735770 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
46735588 AACCTGCCCC
* *
46735598 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * * * *
46735644 TAAGTGAACTCGGACTCAACTCAACGAGTTTGAATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * * * *
46735690 TTTCA-CGAACTCGGACTCAACTCAACGAGGTCAGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
*
46735737 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
46735771 TGCTCAACCA
Statistics
Matches: 96, Mismatches: 26, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
45 2 0.02
46 62 0.65
47 30 0.31
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:46738196 original size:29 final size:29
Alignment explanation
Indices: 46738163--46738236 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
46738153 GTGACGAGAT
46738163 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
46738192 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
46738221 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46738237 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:46738252 original size:29 final size:29
Alignment explanation
Indices: 46738220--46738295 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
46738210 CTGGAAATAT
* *
46738220 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
46738249 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
46738278 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
46738296 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:46738263 original size:58 final size:58
Alignment explanation
Indices: 46738163--46738295 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
46738153 GTGACGAGAT
* * * * * *
46738163 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
46738221 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
46738279 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
46738296 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:46741841 original size:4 final size:4
Alignment explanation
Indices: 46741832--46741856 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
46741822 TAGGTGTATT
46741832 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
46741857 ATATATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:46750147 original size:17 final size:17
Alignment explanation
Indices: 46750125--46750181 Score: 96
Period size: 17 Copynumber: 3.4 Consensus size: 17
46750115 ATGGGCTAAA
46750125 TGGGCCTGATGGGCTGT
1 TGGGCCTGATGGGCTGT
* *
46750142 TGGGCCTGATAGGCTAT
1 TGGGCCTGATGGGCTGT
46750159 TGGGCCTGATGGGCTGT
1 TGGGCCTGATGGGCTGT
46750176 TGGGCC
1 TGGGCC
46750182 AATAATAGAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.09, C:0.19, G:0.44, T:0.28
Consensus pattern (17 bp):
TGGGCCTGATGGGCTGT
Found at i:46750287 original size:29 final size:29
Alignment explanation
Indices: 46750254--46750329 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
46750244 ATAATATGAT
*
46750254 TTGGGCCTAATGAGCCATATGAAGGTGAA
1 TTGGGCCTAATGAGCCATAAGAAGGTGAA
* * *
46750283 TTGGGCCTAGTGGGCCATAAGAATGTGAA
1 TTGGGCCTAATGAGCCATAAGAAGGTGAA
*
46750312 CTGGGCC-AGATGAGCCAT
1 TTGGGCCTA-ATGAGCCAT
46750330 TTCAATAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 1 0.03
29 38 0.97
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.22
Consensus pattern (29 bp):
TTGGGCCTAATGAGCCATAAGAAGGTGAA
Found at i:46756188 original size:40 final size:40
Alignment explanation
Indices: 46756080--46756289 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
46756070 CGGGATTTAA
* * * * *
46756080 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
46756120 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46756160 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46756200 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46756240 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
46756280 CCGGATATAT
1 CCGGATATAT
46756290 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:46760971 original size:24 final size:24
Alignment explanation
Indices: 46760941--46760987 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
46760931 ATGAATCGAC
* *
46760941 AAAAGCCGAAATGCCAAAAAGTCA
1 AAAAGCCAAAATACCAAAAAGTCA
*
46760965 AAAAGCCAAAATACTAAAAAGTC
1 AAAAGCCAAAATACCAAAAAGTC
46760988 GAAAGTTGGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.57, C:0.19, G:0.13, T:0.11
Consensus pattern (24 bp):
AAAAGCCAAAATACCAAAAAGTCA
Found at i:46762561 original size:28 final size:28
Alignment explanation
Indices: 46762479--46762568 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 28
46762469 TGAGCATGAC
*
46762479 TATAAATGTAAATTGGGCCT-GATGGGCCA
1 TATAAATGT-GATTGGGCCTAG-TGGGCCA
* *
46762508 TATAAATGTGATTTGGGCCTAATGGGCGA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
46762537 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
46762565 TATA
1 TATA
46762569 TAGGTATGTG
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
28 20 0.37
29 34 0.63
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:46770821 original size:48 final size:48
Alignment explanation
Indices: 46770748--46771032 Score: 268
Period size: 48 Copynumber: 5.9 Consensus size: 48
46770738 ACGGTGAATT
* * * * *
46770748 GCCGATGCCTTGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
46770796 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* ** *
46770844 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-ATGCACATATTAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCGAG
** * * *
46770892 GCCGATTTCATGTCCCAGACATGGTCTTACACTAGCTCTCATATTGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * * * * *
46770940 GCTGACGCCATGTCCCAGACATGGCCTTACACTGGCACACATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGAG
* * * *
46770988 GTCAATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
46771033 ACCCAAATGT
Statistics
Matches: 196, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
47 3 0.02
48 190 0.97
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
Found at i:46778891 original size:15 final size:15
Alignment explanation
Indices: 46778871--46778901 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
46778861 AACGAGAATC
46778871 CATCTCGTTAGATTT
1 CATCTCGTTAGATTT
*
46778886 CATCTCTTTAGATTT
1 CATCTCGTTAGATTT
46778901 C
1 C
46778902 TTAGACTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.23, G:0.10, T:0.48
Consensus pattern (15 bp):
CATCTCGTTAGATTT
Found at i:46781145 original size:20 final size:20
Alignment explanation
Indices: 46781116--46781164 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
46781106 GACATACTTT
*
46781116 TTGGATTACCCGTTGAACAC
1 TTGGAATACCCGTTGAACAC
46781136 TTGGAATACCCGTTGAACAC
1 TTGGAATACCCGTTGAACAC
*
46781156 ATGGAATAC
1 TTGGAATAC
46781165 TATTAGATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (20 bp):
TTGGAATACCCGTTGAACAC
Found at i:46795521 original size:40 final size:40
Alignment explanation
Indices: 46795476--46795605 Score: 142
Period size: 40 Copynumber: 3.2 Consensus size: 40
46795466 CGGAATATAA
46795476 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
46795516 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
46795556 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
46795596 CCGGATATAA
1 CCGGATATAA
46795606 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 69 0.93
41 3 0.04
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:46795620 original size:40 final size:40
Alignment explanation
Indices: 46795492--46795643 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
46795482 ATAAGCATGT
* * *
46795492 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-CA
** * *
46795532 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCGCTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* **
46795572 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
* * *
46795612 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
46795644 CATTCAATTT
Statistics
Matches: 93, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACCA
Found at i:46795626 original size:80 final size:80
Alignment explanation
Indices: 46795492--46795643 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
46795482 ATAAGCATGT
* *
46795492 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
46795557 CGGATATAGCCGCTA
66 CGGATATAGCCGCTA
* * ** * *
46795572 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
46795635 CCCGGATAT
64 CCCGGATAT
46795644 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCGCTA
Found at i:46798641 original size:92 final size:92
Alignment explanation
Indices: 46798484--46798653 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
46798474 ACCCCTAAGT
* * *
46798484 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
46798549 CGAGTTCGGATGCCAGTTACATCTCAC
66 CGAGTTCGGATGCCAGTTACATCTCAC
* *
46798576 GAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
46798641 CGAGTTCGGATGC
66 CGAGTTCGGATGC
46798654 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCAGTTACATCTCAC
Found at i:46798650 original size:46 final size:46
Alignment explanation
Indices: 46798479--46798650 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
46798469 AACCCACCCC
* * *
46798479 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * *
46798525 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---CATTTGCATCCA
* * *
46798572 TCA-CGAACTCAGACTCAACTCAACGAGCTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
46798617 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
46798651 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
43 7 0.07
44 1 0.01
45 2 0.02
46 85 0.83
47 2 0.02
48 1 0.01
49 5 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:46810744 original size:66 final size:68
Alignment explanation
Indices: 46810668--46810854 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
46810658 TAGTACCACT
*
46810668 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46810730 CACG
65 CACG
46810734 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46810799 ATCACG
63 ATCACG
46810805 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46810855 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46810779 original size:71 final size:71
Alignment explanation
Indices: 46810691--46810854 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46810681 CGATTTGTCT
46810691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46810756 CTTTCA
66 CTTTCA
46810762 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46810827 CTTTCA
66 CTTTCA
46810833 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46810855 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46810892 original size:71 final size:70
Alignment explanation
Indices: 46810691--46810888 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
46810681 CGATTTGTCT
* * *
46810691 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46810756 CTTTCA
65 CTTTCA
* * *
46810762 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46810827 CTTTCA
65 CTTTCA
* *
46810833 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
46810889 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46818313 original size:66 final size:68
Alignment explanation
Indices: 46818237--46818423 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
46818227 TAGTACCACT
*
46818237 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46818299 CACG
65 CACG
46818303 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46818368 ATCACG
63 ATCACG
46818374 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46818424 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46818348 original size:71 final size:71
Alignment explanation
Indices: 46818260--46818423 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46818250 CGATTTGTCT
46818260 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46818325 CTTTCA
66 CTTTCA
46818331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46818396 CTTTCA
66 CTTTCA
46818402 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46818424 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46818461 original size:71 final size:70
Alignment explanation
Indices: 46818260--46818457 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
46818250 CGATTTGTCT
* * *
46818260 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46818325 CTTTCA
65 CTTTCA
* * *
46818331 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46818396 CTTTCA
65 CTTTCA
* *
46818402 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
46818458 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46828060 original size:14 final size:15
Alignment explanation
Indices: 46828038--46828067 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
46828028 GAATATTAAA
46828038 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
46828053 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
46828067 A
1 A
46828068 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:46830378 original size:29 final size:28
Alignment explanation
Indices: 46830346--46830448 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46830336 GTGACGAGAT
* *
46830346 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
46830375 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
46830404 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
46830433 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46830449 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:46838271 original size:29 final size:28
Alignment explanation
Indices: 46838239--46838341 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
46838229 GTGACGAGAT
* *
46838239 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
46838268 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
46838297 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
46838326 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46838342 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:46842416 original size:11 final size:10
Alignment explanation
Indices: 46842385--46842413 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
46842375 CCTCTTTCTC
46842385 CTTC-CTTTT
1 CTTCACTTTT
46842394 CTTCACTTTT
1 CTTCACTTTT
46842404 CTTCACTTTT
1 CTTCACTTTT
46842414 TCTCTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.21
10 15 0.79
ACGTcount: A:0.07, C:0.31, G:0.00, T:0.62
Consensus pattern (10 bp):
CTTCACTTTT
Found at i:46844274 original size:17 final size:17
Alignment explanation
Indices: 46844247--46844289 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
46844237 TTTGAGTCCA
*
46844247 TTTAGTTTTCAATTTGTT
1 TTTA-TTTTCAATTTATT
* *
46844265 TTTCTTTTCATTTTATT
1 TTTATTTTCAATTTATT
46844282 TTTATTTT
1 TTTATTTT
46844290 AGCATTTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (17 bp):
TTTATTTTCAATTTATT
Found at i:46844321 original size:24 final size:25
Alignment explanation
Indices: 46844269--46844323 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
46844259 TTTGTTTTTC
* *
46844269 TTTTCATTTTATTTTTATTTTAGCA
1 TTTTCTTTTTATTTTTATTTTACCA
*
46844294 -TTTCTTTTTGTTTTTA-TTTACCA
1 TTTTCTTTTTATTTTTATTTTACCA
46844317 TTTTCTT
1 TTTTCTT
46844324 AAAAGACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 6 0.23
24 20 0.77
ACGTcount: A:0.15, C:0.11, G:0.04, T:0.71
Consensus pattern (25 bp):
TTTTCTTTTTATTTTTATTTTACCA
Found at i:46846116 original size:19 final size:19
Alignment explanation
Indices: 46846092--46846132 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
46846082 ATGGATTTGT
46846092 TTTAATTGTGAGTTGAGGA
1 TTTAATTGTGAGTTGAGGA
46846111 TTTAATTGTGAGTTGAGGA
1 TTTAATTGTGAGTTGAGGA
46846130 TTT
1 TTT
46846133 TACTTGAGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (19 bp):
TTTAATTGTGAGTTGAGGA
Found at i:46855343 original size:50 final size:50
Alignment explanation
Indices: 46855286--46855387 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
46855276 AAATGTGTTG
46855286 ATTCTATTTTTGTGTTGTATTGAATGTGCAATGTACAAATATTAAATTGT
1 ATTCTATTTTTGTGTTGTATTGAATGTGCAATGTACAAATATTAAATTGT
46855336 ATTCTATTTTTGTGTTGTATTGAATGTGCAATGTACAAATATTAAATTGT
1 ATTCTATTTTTGTGTTGTATTGAATGTGCAATGTACAAATATTAAATTGT
46855386 AT
1 AT
46855388 GAAAATATCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.48
Consensus pattern (50 bp):
ATTCTATTTTTGTGTTGTATTGAATGTGCAATGTACAAATATTAAATTGT
Found at i:46858730 original size:30 final size:30
Alignment explanation
Indices: 46858694--46858824 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
46858684 GACAAGATTG
* * * * *
46858694 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
46858724 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
46858752 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
46858782 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
46858811 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46858825 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:46858785 original size:58 final size:58
Alignment explanation
Indices: 46858694--46858824 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
46858684 GACAAGATTG
* * * * * *
46858694 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
46858752 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
46858811 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
46858825 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:46869249 original size:24 final size:24
Alignment explanation
Indices: 46868814--46869241 Score: 777
Period size: 24 Copynumber: 17.9 Consensus size: 24
46868804 GCAAAGACCA
46868814 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46868838 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46868862 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46868886 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46868910 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
* *
46868934 TATAGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
46868958 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46868982 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46869006 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46869030 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46869054 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
46869078 TAT-GCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
46869101 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
46869125 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
46869149 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
46869173 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
46869197 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
46869221 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
46869242 TGCTATAGTC
Statistics
Matches: 394, Mismatches: 9, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
23 22 0.06
24 372 0.94
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:46876885 original size:40 final size:40
Alignment explanation
Indices: 46876793--46876971 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
46876783 CGAATGGTAT
* * *
46876793 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
46876834 CCGGGTTAAGTCCCGAAGGCATTTGTTCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
46876874 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
46876914 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
46876954 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
46876972 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.77
41 25 0.21
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:46878571 original size:26 final size:26
Alignment explanation
Indices: 46878542--46878664 Score: 117
Period size: 27 Copynumber: 4.7 Consensus size: 26
46878532 TTAGTTTACC
*
46878542 AAATTACTGAAATACCTCCAG-TTGTA
1 AAATTACCGAAATACC-CCAGTTTGTA
* *
46878568 AAATTACC-AAAGTACCCCGGTTTATA
1 AAATTACCGAAA-TACCCCAGTTTGTA
* *
46878594 AAATTACCCAAATATCCTC-GATTTGTA
1 AAATTACCGAAATA-CCCCAG-TTTGTA
*
46878621 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACCGAAATACCC-CAGTTTGTA
*
46878648 AAATTACTGAAATACCC
1 AAATTACCGAAATACCC
46878665 TCGACATGTA
Statistics
Matches: 81, Mismatches: 9, Indels: 13
0.79 0.09 0.13
Matches are distributed among these distances:
25 6 0.07
26 28 0.35
27 46 0.57
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (26 bp):
AAATTACCGAAATACCCCAGTTTGTA
Found at i:46878622 original size:27 final size:27
Alignment explanation
Indices: 46878563--46878695 Score: 121
Period size: 27 Copynumber: 5.0 Consensus size: 27
46878553 ATACCTCCAG
*
46878563 TTGTAAAATTA-CCAAAGTACCC-CGGT
1 TTGTAAAATTACCCAAA-TACCCTCGAT
* *
46878589 TTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCCAAATACCCTCGAT
*
46878616 TTGTAAAATTACCGAAATACCCTC-AGT
1 TTGTAAAATTACCCAAATACCCTCGA-T
* ** *
46878643 TTGCAAAATTACTGAAATACCCTCGAC
1 TTGTAAAATTACCCAAATACCCTCGAT
* *
46878670 ATGTAAAATTA-TCAAAGTACCCTCGA
1 TTGTAAAATTACCCAAA-TACCCTCGA
46878696 ATTACAAAAA
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
26 19 0.21
27 70 0.78
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCCAAATACCCTCGAT
Found at i:46878667 original size:54 final size:53
Alignment explanation
Indices: 46878534--46878710 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 53
46878524 AGAATACTTT
* * *
46878534 AGTTTACCAAATTACTGAAATACCTCCAGTTGTAAAATTACCAAAGTACCC-C
1 AGTTTACAAAATTACTGAAATACCTCGACTTGTAAAATTACCAAAGTACCCTC
* * ** *
46878586 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC
1 AGTTTACAAAATTACTGAAATA-CCTCGACTTGTAAAATTACC-AAAGTACCCTC
* * *
46878640 AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 AGTTTACAAAATTACTGAAATA-CCTCGACTTGTAAAATTACCAAAGTACCCTC
*
46878694 -GAATTACAAAAATTACT
1 AG-TTTAC-AAAATTACT
46878711 ATTTTACCCT
Statistics
Matches: 101, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
52 17 0.17
53 27 0.27
54 48 0.48
55 9 0.09
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
AGTTTACAAAATTACTGAAATACCTCGACTTGTAAAATTACCAAAGTACCCTC
Found at i:46878742 original size:27 final size:27
Alignment explanation
Indices: 46878687--46879005 Score: 424
Period size: 27 Copynumber: 11.8 Consensus size: 27
46878677 ATTATCAAAG
* *
46878687 TACCCTCGAATTACAAAAATTACTATTT
1 TACCCTCGATTTAC-AAAATTACTGTTT
* *
46878715 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
46878742 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* **
46878769 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
46878796 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46878823 TACCCTCGATTTACAAAATTACTGCTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46878850 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46878877 TACCCTCGATTTACATAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
46878904 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-GTTT
* *
46878931 TACCCTCGATTTTCAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
46878958 TATCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
46878985 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
46879006 TCAAAATACC
Statistics
Matches: 258, Mismatches: 31, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 243 0.94
28 14 0.05
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:46879006 original size:81 final size:81
Alignment explanation
Indices: 46878687--46879007 Score: 473
Period size: 81 Copynumber: 4.0 Consensus size: 81
46878677 ATTATCAAAG
* *
46878687 TACCCTCGAATTACAAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTAC-AAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
* *
46878752 TTATAAAATTACCGTTT
65 TTACAAAATTATCGTTT
* *
46878769 TACCCTCGATTTAAAAAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
46878834 TACAAAATTA-CTGCTT
66 TACAAAATTATC-GTTT
* * *
46878850 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACATAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
46878915 TATAAAATTATCGTTT
66 TACAAAATTATCGTTT
* * * **
46878931 TACCCTCGATTTTCAAAATTACTATTTTATCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
46878996 TACAAAATTATC
66 TACAAAATTATC
46879008 AAAATACCCT
Statistics
Matches: 217, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.00
81 203 0.94
82 13 0.06
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TACAAAATTATCGTTT
Found at i:46879038 original size:27 final size:27
Alignment explanation
Indices: 46879007--46879251 Score: 249
Period size: 27 Copynumber: 9.1 Consensus size: 27
46878997 ACAAAATTAT
* * *
46879007 CAAAATACCCTTGTAGGGCAGAAATGC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* * *
46879034 TAAAATACCCTTGTATGGTAGAAATAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
*
46879061 CGAAATACCCCTGTAGGGTAGAAATAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* * *
46879088 CGAAATACCCCTGTATGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* *
46879115 TAAAATACCCCTGTAGGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* *
46879142 CTAAATACCCTTGTAGGGTAGAAATAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* *
46879169 CGAAATACCCCTGTAGGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
** * * *
46879196 TGAAATACTCCTGTAAGGTAGAATTAC
1 CAAAATACCCCTGTAGGGTAGAAATAC
* * * *
46879223 CGAGATACCCTTGTGGGGTA-AAATTAC
1 CAAAATACCCCTGTAGGGTAGAAA-TAC
46879250 CA
1 CA
46879252 TTTTACCCCT
Statistics
Matches: 186, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 184 0.99
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CAAAATACCCCTGTAGGGTAGAAATAC
Found at i:46879067 original size:54 final size:54
Alignment explanation
Indices: 46879009--46879246 Score: 284
Period size: 54 Copynumber: 4.4 Consensus size: 54
46878999 AAAATTATCA
* * * *
46879009 AAATACCCTTGTAGGGCAGAAATGCTAAAATACCCTTGTATGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACTGAAATACCCTTGTATGGTAGAAATACCG
* * * **
46879063 AAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTATGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAAATACTGAAATACCCTTGTATGGTAGAAATACCG
* *
46879117 AAATACCCCTGTAGGGTAGAATTACCT-AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATA-CTGAAATACCCTTGTATGGTAGAAATACCG
* * *
46879171 AAATACCCCTGTAGGGTAGAATTACTGAAATACTCC-TGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACTGAAATAC-CCTTGTATGGTAGAAATACCG
* * *
46879225 AGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAAAT
46879247 TACCATTTTA
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
53 5 0.03
54 151 0.95
55 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAAATACTGAAATACCCTTGTATGGTAGAAATACCG
Found at i:46879261 original size:81 final size:80
Alignment explanation
Indices: 46879009--46879246 Score: 325
Period size: 81 Copynumber: 3.0 Consensus size: 80
46878999 AAAATTATCA
* * * * * * *
46879009 AAATACCCTTGTAGGGCAGAAATGCTAAAATACCCTTGTATGGTAGAAATACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCC-TGTAAGGTAGAATTACCGAAATACCCTTG
46879074 TAGGGTAGAAATACCG
65 TAGGGTAGAAATACCG
* * *
46879090 AAATACCCCTGTATGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCTAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTACTAAAATA-CCCTGTAAGGTAGAATTACCGAAATACCCTTG
46879155 TAGGGTAGAAATACCG
65 TAGGGTAGAAATACCG
* *
46879171 AAATACCCCTGTAGGGTAGAATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTACTAAAATAC-CCTGTAAGGTAGAATTACCGAAATACCCTTG
*
46879236 TGGGGTA-AAAT
65 TAGGGTAGAAAT
46879247 TACCATTTTA
Statistics
Matches: 140, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 5 0.04
81 132 0.94
82 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (80 bp):
AAATACCCCTGTAGGGTAGAATTACTAAAATACCCTGTAAGGTAGAATTACCGAAATACCCTTGT
AGGGTAGAAATACCG
Found at i:46879695 original size:6 final size:6
Alignment explanation
Indices: 46879668--46879776 Score: 57
Period size: 6 Copynumber: 17.7 Consensus size: 6
46879658 ATCTGATTTT
* * *
46879668 TGATTC TG-TTAC TTGATAC TGATTC TGATTT TGATTC TG-TTACC TTG-TAC
1 TGATTC TGATT-C -TGATTC TGATTC TGATTC TGATTC TGATT--C -TGATTC
* * *
46879718 TGATTC TGATTC TGATTC TG-TCACC TAATTT TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC TGATTC
46879767 T-AGTTC TGAT
1 TGA-TTC TGAT
46879777 AATGTTTCTT
Statistics
Matches: 79, Mismatches: 12, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
5 8 0.10
6 59 0.75
7 7 0.09
8 5 0.06
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.50
Consensus pattern (6 bp):
TGATTC
Found at i:46879703 original size:31 final size:31
Alignment explanation
Indices: 46879659--46879792 Score: 130
Period size: 31 Copynumber: 4.3 Consensus size: 31
46879649 TGCATTCACA
*
46879659 TCTGATTTTTGATTCTGTTACTTGATACTGAT
1 TCTGA-TTCTGATTCTGTTACTTGATACTGAT
*
46879691 TCTGATTTTGATTCTGTTACCTTG-TACTGAT
1 TCTGATTCTGATTCTGTTA-CTTGATACTGAT
* * * **
46879722 TCTGATTCTGATTCTGTCACCTAATTTTGAT
1 TCTGATTCTGATTCTGTTACTTGATACTGAT
* *
46879753 TCTGATTCTGATTCTAGTT-C-TGATAATGTT
1 TCTGATTCTGATTCT-GTTACTTGATACTGAT
*
46879783 TCTTATTCTG
1 TCTGATTCTG
46879793 TAATGGGTTA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
30 17 0.20
31 59 0.68
32 11 0.13
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.51
Consensus pattern (31 bp):
TCTGATTCTGATTCTGTTACTTGATACTGAT
Found at i:46883863 original size:18 final size:18
Alignment explanation
Indices: 46883837--46883882 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 18
46883827 AAAAAACTCT
*
46883837 AACCTTAACAAAATTAATA
1 AACC-TAACAAAATTAAAA
46883856 AACCTAACAAAATTAAAA
1 AACCTAACAAAATTAAAA
46883874 AACCCTAAC
1 AA-CCTAAC
46883883 CTTAGAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.20
Consensus pattern (18 bp):
AACCTAACAAAATTAAAA
Found at i:46892841 original size:21 final size:21
Alignment explanation
Indices: 46892815--46892855 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46892805 ATCTGCTCAA
* *
46892815 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
46892836 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
46892856 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:46897024 original size:45 final size:44
Alignment explanation
Indices: 46896928--46897040 Score: 127
Period size: 45 Copynumber: 2.5 Consensus size: 44
46896918 TCCAATACAA
* * *
46896928 ATAAGACAATAGTTGAAAGATACTATGGCACCACATCGGTAACG
1 ATAAGACCATAGTTGAAAGATACTATGACACCACATCGGGAACG
* * * *
46896972 ATCAAGACCATAGTTGAAAGATACTATGACACTACTTTGGGAATG
1 AT-AAGACCATAGTTGAAAGATACTATGACACCACATCGGGAACG
* *
46897017 CATAAGACCATGGTTGGAAGATAC
1 -ATAAGACCATAGTTGAAAGATAC
46897041 CATGGCATCC
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 2 0.03
45 54 0.93
46 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (44 bp):
ATAAGACCATAGTTGAAAGATACTATGACACCACATCGGGAACG
Found at i:46898915 original size:330 final size:330
Alignment explanation
Indices: 46898302--46898962 Score: 1169
Period size: 330 Copynumber: 2.0 Consensus size: 330
46898292 AAAGAAACTC
*
46898302 ATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATGGAAATCTACTTCAAAGTTAG
1 ATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATGGAAATCTACATCAAAGTTAG
*
46898367 CTTCAATGGTGTTTTCCGAGTTGTTTTCTTGAATATTCTATGATAACTCCCTCCTATCTTCTTAT
66 CTTCAATGGTGTTTTCCGAGTTGTTTTCTTGAATATTCTACGATAACTCCCTCCTATCTTCTTAT
* ** *
46898432 TTGTGTTATATATAGGTCTTAGAATACCCAAAAAACCTAAAAATTGTGTTTTCCTGCATGTTTGG
131 TTGTGTCATATATAGGTCTTAGAATACCCAAAAAACCTAAAAATTGCATTTTCCCGCATGTTTGG
46898497 AGTGTGATTCGTGAAATCTACATGGTATGACACATGGCCGTGTGGCAGCCCGTGTGTAATGACTC
196 AGTGTGATTCGTGAAATCTACATGGTATGACACATGGCCGTGTGGCAGCCCGTGTGTAATGACTC
* *
46898562 AACCCACGTGGCTCTTGGAACTTGCTCTGATTTTCTTATTTTTGCTCGTTTTTCGCTCGTTTTAC
261 AACCCACGTGGCTCCTGGAACTTGCTCTGATTTTCTTATTTTTGCTCGTTTGTCGCTCGTTTTAC
*
46898627 TCCTA
326 TACTA
* *
46898632 ATAATGAACTTTAAAGAAATCAAAAGGAGATCTTCAATCTTGATGGAAATCTACATCAAAGTTAG
1 ATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATGGAAATCTACATCAAAGTTAG
*
46898697 CTTCAATGGTGTTTTCCGAGTTGTTTTCTTGAATATTCTACGATGACTCCCTCCTATCTTCTTAT
66 CTTCAATGGTGTTTTCCGAGTTGTTTTCTTGAATATTCTACGATAACTCCCTCCTATCTTCTTAT
* *
46898762 TTGTGTCATATATAGGTCTTAGAATGCCCGAAAAACCTAAAAATTGCATTTTCCCGCATGTTTGG
131 TTGTGTCATATATAGGTCTTAGAATACCCAAAAAACCTAAAAATTGCATTTTCCCGCATGTTTGG
* *
46898827 AGTGTGATTCGTGAAATCTACATGGTATGACACATGGTCGTGTGGCAGCCTGTGTGTAATGACTC
196 AGTGTGATTCGTGAAATCTACATGGTATGACACATGGCCGTGTGGCAGCCCGTGTGTAATGACTC
*
46898892 AACCCATGTGGCTCCTGGAACTTGCTCTGATTTTCTTATTTTTGCTCGTTTGTCGCTCGTTTTAC
261 AACCCACGTGGCTCCTGGAACTTGCTCTGATTTTCTTATTTTTGCTCGTTTGTCGCTCGTTTTAC
46898957 TACTA
326 TACTA
46898962 A
1 A
46898963 ATGTTCTCCT
Statistics
Matches: 314, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
330 314 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (330 bp):
ATAATAAACTTCAAAGAAATCAAAAGGAGATCTTCAATCTTGATGGAAATCTACATCAAAGTTAG
CTTCAATGGTGTTTTCCGAGTTGTTTTCTTGAATATTCTACGATAACTCCCTCCTATCTTCTTAT
TTGTGTCATATATAGGTCTTAGAATACCCAAAAAACCTAAAAATTGCATTTTCCCGCATGTTTGG
AGTGTGATTCGTGAAATCTACATGGTATGACACATGGCCGTGTGGCAGCCCGTGTGTAATGACTC
AACCCACGTGGCTCCTGGAACTTGCTCTGATTTTCTTATTTTTGCTCGTTTGTCGCTCGTTTTAC
TACTA
Found at i:46899717 original size:19 final size:19
Alignment explanation
Indices: 46899693--46899738 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
46899683 CAATCAAAAT
46899693 TTTTTTTCTCTTTT-TTATG
1 TTTTTTTCTCTTTTATT-TG
46899712 TTTTTTTCTCTTTTCATTTG
1 TTTTTTTCTCTTTT-ATTTG
46899732 TTTTTTT
1 TTTTTTT
46899739 TTCAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.56
20 9 0.36
21 2 0.08
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.80
Consensus pattern (19 bp):
TTTTTTTCTCTTTTATTTG
Found at i:46899755 original size:16 final size:15
Alignment explanation
Indices: 46899712--46899764 Score: 65
Period size: 16 Copynumber: 3.5 Consensus size: 15
46899702 CTTTTTTATG
46899712 TTTTTTTCTCTTTTCA
1 TTTTTTTCT-TTTTCA
46899728 TTTGTTTT-TTTTTCAA
1 TTT-TTTTCTTTTTC-A
46899744 TTTTTTTCTTTTTC-
1 TTTTTTTCTTTTTCA
46899758 TTTTTTT
1 TTTTTTT
46899765 TAGAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.21
15 9 0.26
16 14 0.41
17 4 0.12
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTTTTCTTTTTCA
Found at i:46899765 original size:10 final size:10
Alignment explanation
Indices: 46899692--46899765 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
46899682 TCAATCAAAA
46899692 TTTTTTTTCT
1 TTTTTTTTCT
* *
46899702 CTTTTTTATGT
1 -TTTTTTTTCT
*
46899713 TTTTTTCTCT
1 TTTTTTTTCT
** *
46899723 TTTCATTTGT
1 TTTTTTTTCT
*
46899733 TTTTTTTTCA
1 TTTTTTTTCT
*
46899743 ATTTTTTTCT
1 TTTTTTTTCT
46899753 TTTTCTTTT-T
1 TTTT-TTTTCT
46899763 TTT
1 TTT
46899766 AGAAAAAAAT
Statistics
Matches: 47, Mismatches: 15, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
10 35 0.74
11 12 0.26
ACGTcount: A:0.05, C:0.11, G:0.03, T:0.81
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:46900979 original size:12 final size:13
Alignment explanation
Indices: 46900953--46900984 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
46900943 TAGGACACAC
46900953 CTGTGTGTCCAGG
1 CTGTGTGTCCAGG
46900966 CTGTGTGT-CAGG
1 CTGTGTGTCCAGG
46900978 CTGTGTG
1 CTGTGTG
46900985 CGATACTCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.06, C:0.19, G:0.41, T:0.34
Consensus pattern (13 bp):
CTGTGTGTCCAGG
Found at i:46911211 original size:6 final size:6
Alignment explanation
Indices: 46911200--46911231 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
46911190 TGTGTTTAAA
46911200 TATAAT TATAAT TATAAT TAT-AT T-TAAT TATA
1 TATAAT TATAAT TATAAT TATAAT TATAAT TATA
46911232 TATTTTAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 1 0.04
5 6 0.25
6 17 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TATAAT
Found at i:46911229 original size:10 final size:11
Alignment explanation
Indices: 46911200--46911232 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
46911190 TGTGTTTAAA
46911200 TATAATTATAAT
1 TATAATTAT-AT
46911212 TATAATTATAT
1 TATAATTATAT
46911223 T-TAATTATAT
1 TATAATTATAT
46911233 ATTTTAGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 9 0.43
11 3 0.14
12 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATAATTATAT
Found at i:46918390 original size:46 final size:46
Alignment explanation
Indices: 46918325--46918549 Score: 317
Period size: 46 Copynumber: 4.9 Consensus size: 46
46918315 TTATCTTCGA
* * * * * *
46918325 CATGATGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCCTGT
* *
46918371 CATGTTGCCATGGTATCTTTCAA-TCATAGTCTTATTCATTTCTTGT
1 CATGTTGCCATGGTATCTTTCAACT-ATGGTCTTATTCATTTCCTGT
* *
46918417 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCCTGT
*
46918463 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCCTGT
* *
46918509 CATGTTGCCATAGTATCTTTCAACTATGGTCTTATACATTT
1 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTT
46918550 GAATCGCGAT
Statistics
Matches: 162, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 161 0.99
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCCTGT
Found at i:46918581 original size:45 final size:45
Alignment explanation
Indices: 46918514--46918637 Score: 169
Period size: 45 Copynumber: 2.8 Consensus size: 45
46918504 CCTGTCATGT
* * *
46918514 TGCCATAGTATCTTTCAACTATGGTCTTA-TACATTTGAATCGCGA
1 TGCCATAGCATCTTTCAGCTATGGTCTTACT-CATCTGAATCGCGA
* * *
46918559 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGA
1 TGCCATAGCATCTTTCAGCTATGGTCTTACTCATCTGAATCGCGA
*
46918604 TGCCATAGCATCTTTCAGCTATGGTCCTACTCAT
1 TGCCATAGCATCTTTCAGCTATGGTCTTACTCAT
46918638 TTCTGGTATG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 68 0.99
46 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (45 bp):
TGCCATAGCATCTTTCAGCTATGGTCTTACTCATCTGAATCGCGA
Found at i:46918650 original size:45 final size:45
Alignment explanation
Indices: 46918325--46918657 Score: 289
Period size: 46 Copynumber: 7.3 Consensus size: 45
46918315 TTATCTTCGA
* *
46918325 CATGATGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTCTGT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCA-TTTCTGT
* * * *
46918371 CATGTTGCCATGGTATCTTTCAA-TCATAGTCTTATTCATTTCTTGT
1 CATGATGCCATAGTATCTTTCAACT-ATGGTCTTACTCATTTC-TGT
* * * * *
46918417 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTT-CTGT
* * * *
46918463 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTT-CTGT
* ***
46918509 CATGTTGCCATAGTATCTTTCAACTATGGTCTTA-TACATTTGAAT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACT-CATTTCTGT
** ** * *
46918554 CGCGATGCCATAGCGTCTTTCAGCTATGGTCTTACTC--GTCTGAAT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCTG--T
* * * *
46918599 CGTGATGCCATAGCATCTTTCAGCTATGGTCCTACTCATTTCTGGT
1 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCT-GT
46918645 -ATGATGCCATAGT
1 CATGATGCCATAGT
46918658 CCAACTATGG
Statistics
Matches: 246, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
43 1 0.00
45 82 0.33
46 158 0.64
47 4 0.02
48 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.41
Consensus pattern (45 bp):
CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCATTTCTGT
Found at i:46918719 original size:33 final size:33
Alignment explanation
Indices: 46918648--46918804 Score: 95
Period size: 33 Copynumber: 4.8 Consensus size: 33
46918638 TTCTGGTATG
* * * *
46918648 ATGCCATAGTCCAACTATGGTCTTACACGTGTA
1 ATGCCATAGCCCAGCCATGGTCTTACACATGTA
* * *
46918681 TTGCCATGGCCCAGCCATGGTCTTACAC-TCGTG
1 ATGCCATAGCCCAGCCATGGTCTTACACAT-GTA
* * * ** *
46918714 GTGCCATATCTCAGATATGGTCTTA-TCAT-TA
1 ATGCCATAGCCCAGCCATGGTCTTACACATGTA
* * * *
46918745 GGATGTCATAGCCTAGCTATGGTCTTACACATATA
1 --ATGCCATAGCCCAGCCATGGTCTTACACATGTA
* *
46918780 CTGCCATGGCCCAGCCATGGTCTTA
1 ATGCCATAGCCCAGCCATGGTCTTA
46918805 TTCGTCAATT
Statistics
Matches: 92, Mismatches: 26, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
31 1 0.01
32 2 0.02
33 84 0.91
34 3 0.03
35 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (33 bp):
ATGCCATAGCCCAGCCATGGTCTTACACATGTA
Found at i:46920386 original size:8 final size:8
Alignment explanation
Indices: 46920366--46920400 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
46920356 TATATACTCT
46920366 AAATAA-A
1 AAATAATA
46920373 ATAATAATA
1 A-AATAATA
46920382 AAATAATA
1 AAATAATA
46920390 AAATAATA
1 AAATAATA
46920398 AAA
1 AAA
46920401 GATCATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 1 0.04
8 23 0.88
9 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:46920725 original size:31 final size:31
Alignment explanation
Indices: 46920668--46920727 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
46920658 CACCCTTAAA
**
46920668 ATATTTACACTATTAGTCCTTCAAATTTTTT
1 ATATTTACACTATTACCCCTTCAAATTTTTT
*
46920699 ATATTTACACTTTTAACCCCTT-AAATTTT
1 ATATTTACACTATT-ACCCCTTCAAATTTT
46920728 AAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 20 0.80
32 5 0.20
ACGTcount: A:0.30, C:0.18, G:0.02, T:0.50
Consensus pattern (31 bp):
ATATTTACACTATTACCCCTTCAAATTTTTT
Found at i:46926137 original size:49 final size:49
Alignment explanation
Indices: 46926079--46926365 Score: 490
Period size: 49 Copynumber: 5.9 Consensus size: 49
46926069 GTATGAGATG
*
46926079 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
46926128 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
46926177 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
46926224 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46926273 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGT-AAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA-GTGTA
* *
46926322 TATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
46926366 TATATGTGTG
Statistics
Matches: 225, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
47 45 0.20
48 3 0.01
49 174 0.77
50 3 0.01
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:46926252 original size:96 final size:97
Alignment explanation
Indices: 46926079--46926365 Score: 488
Period size: 96 Copynumber: 2.9 Consensus size: 97
46926069 GTATGAGATG
* *
46926079 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGG
46926144 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
65 CCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46926177 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG-TATATATGTGATAAGGC
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
46926241 CTAATGGCCAATGTGATGAATGTGAAAGTGTA
66 CTAATGGCCAATGTGATGAATGTGAAAGTGTA
46926273 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGT-AAAGGTGTATATATATGTGATAAG
1 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA-GTG-ATATATATGTGATAAG
* *
46926337 GCCTAATGGCCGATGTAATGAATGTGAAA
64 GCCTAATGGCCAATGTGATGAATGTGAAA
46926366 TATATGTGTG
Statistics
Matches: 180, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
95 3 0.02
96 91 0.51
98 86 0.48
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (97 bp):
TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGC
CTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:46926341 original size:145 final size:145
Alignment explanation
Indices: 46926078--46926365 Score: 515
Period size: 145 Copynumber: 2.0 Consensus size: 145
46926068 TGTATGAGAT
* *
46926078 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
46926143 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
*
46926208 GATGAATGTGAAAGA
131 AATGAATGTGAAAGA
46926223 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
* *
46926288 GCCTAATGGCCAATGTGATGAATGT-AAAGGTGTATATATATGTGATAAGGCCTAATGGCCGATG
66 GCCTAATGGCCAATGTGATGAATGTGAAA-GTGTATATACATGTGATAAGGCCTAATGGCCAATG
46926352 TAATGAATGTGAAA
130 TAATGAATGTGAAA
46926366 TATATGTGTG
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
144 3 0.02
145 134 0.98
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (145 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
AATGAATGTGAAAGA
Found at i:46926414 original size:48 final size:48
Alignment explanation
Indices: 46926357--46926468 Score: 215
Period size: 48 Copynumber: 2.3 Consensus size: 48
46926347 CGATGTAATG
46926357 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
*
46926405 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
46926453 AATGTGAAATATATGT
1 AATGTGAAATATATGT
46926469 ATGCCCGAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:46928172 original size:40 final size:40
Alignment explanation
Indices: 46928126--46928506 Score: 405
Period size: 40 Copynumber: 9.6 Consensus size: 40
46928116 TGAATGATAC
* **
46928126 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATATAT
** * * *
46928166 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AG-TGATATAT
* ** * *
46928206 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGTTCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* * *
46928246 CC-GGCTAAATTCCGAAGAGCATTTGTGCTAATGATATAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
46928285 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
46928325 CCGGGCTAAATTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
46928365 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
46928405 CCGGACTAAGTTTCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* * *
46928445 CCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
* *
46928485 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTTCCGAAGAGCA
46928507 ATCATGCTGG
Statistics
Matches: 307, Mismatches: 26, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
39 24 0.08
40 277 0.90
41 6 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:46932136 original size:49 final size:49
Alignment explanation
Indices: 46932078--46932413 Score: 595
Period size: 49 Copynumber: 6.9 Consensus size: 49
46932068 GTATGAGATG
*
46932078 TATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
46932127 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
46932176 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGAG--
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
46932223 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46932272 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
46932321 TATACATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46932370 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
46932414 TATATGTGTG
Statistics
Matches: 275, Mismatches: 10, Indels: 4
0.95 0.03 0.01
Matches are distributed among these distances:
47 45 0.16
49 230 0.84
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:46932340 original size:145 final size:145
Alignment explanation
Indices: 46932077--46932413 Score: 611
Period size: 145 Copynumber: 2.3 Consensus size: 145
46932067 TGTATGAGAT
* *
46932077 GTATATATGTGATACGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
46932142 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
46932207 GATGAATGTGAAAGA
131 GATGAATGTGAAAGA
46932222 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
1 GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
46932287 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
66 GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
* *
46932352 GATGAATGTGAAGGT
131 GATGAATGTGAAAGA
*
46932367 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 G--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
46932414 TATATGTGTG
Statistics
Matches: 185, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
145 142 0.77
147 43 0.23
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (145 bp):
GTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAG
GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCAATGT
GATGAATGTGAAAGA
Found at i:46932462 original size:48 final size:48
Alignment explanation
Indices: 46932405--46932508 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
46932395 CGATGTGATG
46932405 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
* *
46932453 AATGTGAAATATATGTGTGATATGTATGTGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
46932501 AATGTGAA
1 AATGTGAA
46932509 TGTTGTAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.32
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAAGGGCT
Found at i:46932602 original size:37 final size:37
Alignment explanation
Indices: 46932548--46932636 Score: 151
Period size: 37 Copynumber: 2.4 Consensus size: 37
46932538 AACTTGGAAA
* *
46932548 TATGTTCCGGGTGAGACCTGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
46932586 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
46932623 TATGTCCGGGTAAG
1 TATGTCCGGGTAAG
46932637 CTTCGTAATA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 45 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:46935190 original size:26 final size:26
Alignment explanation
Indices: 46935082--46935198 Score: 73
Period size: 27 Copynumber: 4.4 Consensus size: 26
46935072 GCGAAGCTAC
*
46935082 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGTCACTAGA-A
* * * *
46935109 CAGATATTGTGGCTAGGCCACTAGAA
1 CAGATATTGTGACGAAGTCACTAGAA
* *
46935135 CAGATATATATATGTGGCGAAG-C-C---AC
1 CAG----ATAT-TGTGACGAAGTCACTAGAA
46935161 CAGATATTGTGACGAAGTCACTAGAA
1 CAGATATTGTGACGAAGTCACTAGAA
46935187 CAGATATATGTG
1 CAGATAT-TGTG
46935199 GTGAGGCCAC
Statistics
Matches: 69, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
21 9 0.13
22 5 0.07
23 1 0.01
26 16 0.23
27 24 0.35
29 1 0.01
30 5 0.07
31 8 0.12
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (26 bp):
CAGATATTGTGACGAAGTCACTAGAA
Found at i:46937240 original size:40 final size:40
Alignment explanation
Indices: 46937203--46937387 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
46937193 GCTACTCGTT
*
46937203 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46937243 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46937282 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
46937322 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46937363 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46937388 ATCATTCGAA
Statistics
Matches: 133, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.23
40 88 0.66
41 11 0.08
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46937314 original size:79 final size:79
Alignment explanation
Indices: 46937170--46937387 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
46937160 GAATCACGTA
* * ** *
46937170 CCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAG
46937234 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
46937249 CCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT-TA
1 CCTTCGGGACTTAACCGGATATAGT-ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTATA
46937312 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* *
46937328 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
46937388 ATCATTCGAA
Statistics
Matches: 120, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
78 7 0.06
79 72 0.60
80 30 0.25
81 11 0.09
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAGT
AACTCGCACAAATG
Found at i:46945363 original size:40 final size:40
Alignment explanation
Indices: 46945259--46945443 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
46945249 AGCTATCGTT
*
46945259 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTC-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46945298 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46945338 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
46945378 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
* *
46945419 TAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46945444 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
39 35 0.27
40 86 0.66
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46955978 original size:26 final size:26
Alignment explanation
Indices: 46955942--46955996 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
46955932 GTTTCTCAGT
*
46955942 ACACTTATTCTATTTTAGAACATCAA
1 ACACTTATTCTATTTCAGAACATCAA
46955968 ACACTTATTCTATTTCAGAACATCAA
1 ACACTTATTCTATTTCAGAACATCAA
46955994 ACA
1 ACA
46955997 TGTGACATCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.35
Consensus pattern (26 bp):
ACACTTATTCTATTTCAGAACATCAA
Found at i:46958930 original size:49 final size:47
Alignment explanation
Indices: 46958813--46959129 Score: 447
Period size: 47 Copynumber: 6.7 Consensus size: 47
46958803 GATTTTACGC
* * * *
46958813 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGAGGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
46958860 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
46958907 GATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
* *
46958956 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG-CAGATGT
1 GATGAATGTG-AAG-GTGTATATATGTGATAAGGCCGAATGGCCA-ATGT
46959005 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
46959052 GATGAATGTGAAGGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
* * *
46959099 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAGGTGTATATATGTGATAAG
46959130 TCCCGAAGGG
Statistics
Matches: 247, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 153 0.62
48 9 0.04
49 85 0.34
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:46958937 original size:96 final size:93
Alignment explanation
Indices: 46958813--46959129 Score: 447
Period size: 96 Copynumber: 3.3 Consensus size: 93
46958803 GATTTTACGC
*
46958813 GATGAATGTGAATGTGTATATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
46958878 TATATGTGATAAGGCCGAATGGCCAATGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
*
46958907 GATGAATGTGAAAGTGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTG-AA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAG-G
* *
46958972 TATATATATGTGATAAGGCCTAATGG-CAGATGT
61 TGTATATATGTGATAAGGCCGAATGGCCA-ATGT
* *
46959005 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAGGTGTA
1 GATGAATGTGAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTA
* * *
46959070 TATATGTGATAGGGCCGAGTGGCCAACGT
65 TATATGTGATAAGGCCGAATGGCCAATGT
* *
46959099 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTG-AAGTGTATATATGTGATAAG
46959130 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
94 62 0.31
95 9 0.04
96 84 0.42
97 7 0.03
98 39 0.19
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.29
Consensus pattern (93 bp):
GATGAATGTGAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGT
Found at i:46969720 original size:21 final size:22
Alignment explanation
Indices: 46969687--46969727 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
46969677 TTCATTTATG
*
46969687 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
46969708 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
46969728 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:46974036 original size:45 final size:45
Alignment explanation
Indices: 46973985--46974099 Score: 162
Period size: 44 Copynumber: 2.6 Consensus size: 45
46973975 GCCATAACGT
*
46973985 CTTTCAACCATGGTCTTATTTATTTCCGA-CATGATGCCATAGTGC
1 CTTTCAACCATGGTCTTATTCATTTCC-ATCATGATGCCATAGTGC
* *
46974030 CTTTCAA-CATGGTCTTATTCATTTCCATCATGTTGCCATAGTGT
1 CTTTCAACCATGGTCTTATTCATTTCCATCATGATGCCATAGTGC
* *
46974074 CTTTCGACTATGGTCTTATTCATTTC
1 CTTTCAACCATGGTCTTATTCATTTC
46974100 TGGTATAGCG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 38 0.60
45 24 0.38
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (45 bp):
CTTTCAACCATGGTCTTATTCATTTCCATCATGATGCCATAGTGC
Found at i:46974054 original size:44 final size:44
Alignment explanation
Indices: 46973972--46974144 Score: 181
Period size: 45 Copynumber: 3.9 Consensus size: 44
46973962 TTTGTTCAAG
** *
46973972 GATGCCATAACGTCTTTCAACCATGGTCTTATTTATTTCCGACAT
1 GATGCCATAGTGTCTTTCAA-CATGGTCTTATTCATTTCCGACAT
*
46974017 GATGCCATAGTGCCTTTCAACATGGTCTTATTCATTTCC-ATCAT
1 GATGCCATAGTGTCTTTCAACATGGTCTTATTCATTTCCGA-CAT
* * * **
46974061 GTTGCCATAGTGTCTTTCGACTATGGTCTTATTCATTTCTGGTAT
1 GATGCCATAGTGTCTTTCAAC-ATGGTCTTATTCATTTCCGACAT
*
46974106 -AGCGCCATAGTGTCTTTCAAC-TGTGATCTTATTCATTTC
1 GA-TGCCATAGTGTCTTTCAACATG-G-TCTTATTCATTTC
46974145 AAGCCAATGA
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
43 3 0.03
44 40 0.37
45 66 0.61
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.41
Consensus pattern (44 bp):
GATGCCATAGTGTCTTTCAACATGGTCTTATTCATTTCCGACAT
Found at i:46986748 original size:50 final size:50
Alignment explanation
Indices: 46986623--46986808 Score: 203
Period size: 50 Copynumber: 3.7 Consensus size: 50
46986613 TATTGGTATG
*** *
46986623 CATAGTAGCCTGCACTTAGTACTACACATACGACC-AATTATCCGACACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGATACA
* ** **
46986672 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGATACA
* * * * * *
46986722 CATAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCCGATACA
* *
46986773 CATAATAGCCTGCACTTAGTACTACACACGTTACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
46986809 CACAATAGAT
Statistics
Matches: 111, Mismatches: 24, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
49 31 0.28
50 43 0.39
51 37 0.33
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCCGATACA
Found at i:46989854 original size:40 final size:39
Alignment explanation
Indices: 46989750--46989855 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 39
46989740 TGCTGGAAAT
* *
46989750 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGT-GCTAC
*
46989791 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGC-TAC
46989830 TATCCGGGCTAAGACCCGAAGGCATT
1 TATCCGGGCTAAGACCCGAAGGCATT
46989856 TGGCACATGG
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 53 0.90
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGCTAC
Found at i:46994621 original size:46 final size:46
Alignment explanation
Indices: 46994571--46994746 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
46994561 TGTCTGAGCA
* *
46994571 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * *
46994617 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CG
* **
46994664 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * * *
46994710 CCCGAGCTCATTGAGTTGAGTCGGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46994747 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 7 0.06
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:46994727 original size:93 final size:93
Alignment explanation
Indices: 46994568--46994739 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
46994558 GGATGTCTGA
* * * *
46994568 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
46994633 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
46994661 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
*
46994726 TGAGTCGGAGTTCG
66 TGAGTCCGAGTTCG
46994740 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46998467 original size:19 final size:19
Alignment explanation
Indices: 46998443--46998492 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
46998433 AAATTTAGTC
46998443 CTATATTTATTTTATTATT
1 CTATATTTATTTTATTATT
*
46998462 CTATATATATTTTATTATT
1 CTATATTTATTTTATTATT
*
46998481 -TGT-TTTATTTTA
1 CTATATTTATTTTA
46998493 ATTTTACTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 8 0.29
18 2 0.07
19 18 0.64
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (19 bp):
CTATATTTATTTTATTATT
Found at i:46998598 original size:22 final size:21
Alignment explanation
Indices: 46998573--46998641 Score: 70
Period size: 22 Copynumber: 3.3 Consensus size: 21
46998563 TTCTCTCATA
*
46998573 ATTATTATTTTTATATATATAT
1 ATTATTATATTTAT-TATATAT
*
46998595 ATTATTATATTT-TTACATAT
1 ATTATTATATTTATTATATAT
* *
46998615 ATTA-TACATTTATTTATACAT
1 ATTATTATATTTA-TTATATAT
46998636 ATTATT
1 ATTATT
46998642 TTTACATAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 6 0.15
20 10 0.26
21 11 0.28
22 12 0.31
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTATATTTATTATATAT
Found at i:46998814 original size:24 final size:24
Alignment explanation
Indices: 46998741--46998816 Score: 70
Period size: 24 Copynumber: 3.1 Consensus size: 24
46998731 ATATTGCTTA
*
46998741 TTAT-TTTATA-TATATATACATAT
1 TTATGTTTATATTATATATA-TTAT
46998764 GTTATG--TATATTACATATTATATTAT
1 -TTATGTTTATATT--ATA-TATATTAT
46998790 TTATGTTTATATTATATATATTAT
1 TTATGTTTATATTATATATATTAT
46998814 TTA
1 TTA
46998817 AAATTTTGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
23 4 0.09
24 16 0.36
25 8 0.18
26 6 0.14
27 10 0.23
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.58
Consensus pattern (24 bp):
TTATGTTTATATTATATATATTAT
Found at i:47002855 original size:15 final size:15
Alignment explanation
Indices: 47002819--47002868 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
47002809 CGATATTCTT
47002819 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
47002833 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
47002849 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
47002862 TTTGCAT
1 TTTGCAT
47002869 TTAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:47009206 original size:80 final size:80
Alignment explanation
Indices: 47009122--47009270 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
47009112 TATGGTAACC
* * * *
47009122 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
47009186 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
47009202 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
47009267 CCGG
66 CCGG
47009271 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:47009212 original size:40 final size:38
Alignment explanation
Indices: 47009163--47009270 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
47009153 ATCACGATTT
*
47009163 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
47009203 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
47009243 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
47009271 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:47014402 original size:108 final size:108
Alignment explanation
Indices: 47014208--47014730 Score: 472
Period size: 120 Copynumber: 4.5 Consensus size: 108
47014198 GGTATTCTTG
* * *
47014208 TGTTTACAAGGAAA-AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAGATATAGCAG
1 TGTTGACAA-GAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAG
*
47014272 ATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATT
65 ATCTAACCTTCAGAGGTTTATACTGAAGCAGATCCAAGATGATT
* *
47014316 TGTTGACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGATGTTCTCAAATATAACAGA
1 TGTTGACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
* * * *
47014381 TCTAGCTTTCAGATGTTTATACTGAAGCAGATCTAAGATGATT
66 TCTAACCTTCAGAGGTTTATACTGAAGCAGATCCAAGATGATT
* *
47014424 TGGTATTCTTGTGTTTACAGGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
1 T-G------T-TG---ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
* * * *
47014489 AATATAGCAGATCTAGCCTTCAGAGGTTTATATTGAAGTAAGGTCCAAGATGATT
55 AATATAGCAGATCTAACCTTCAGAGGTTTATACTGAAG-CAGATCCAAGATGATT
* * * *
47014544 TGACATTCTTATGTTTACAAGAAAGAAATCAAGGATATAGCAGATTTGACTCTTAGATGTTCTCA
1 TG-------T-TG---ACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCA
* * * * *
47014609 GACATGGCAGATCTAACCTTCAGAGGTTTATACTGAAGCAAGGTTCAAGCTGATTTGACATTCTT
55 AATATAGCAGATCTAACCTTCAGAGGTTTATACTGAAGC-AGATCCAA---GA--TG--A---TT
* *
47014674 ATGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
1 -TGTTGACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
47014731 CAGACTCAAG
Statistics
Matches: 351, Mismatches: 38, Indels: 40
0.82 0.09 0.09
Matches are distributed among these distances:
107 4 0.01
108 96 0.27
109 1 0.00
115 1 0.00
116 2 0.01
119 81 0.23
120 155 0.44
123 3 0.01
124 1 0.00
125 2 0.01
127 1 0.00
130 2 0.01
131 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (108 bp):
TGTTGACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
TCTAACCTTCAGAGGTTTATACTGAAGCAGATCCAAGATGATT
Found at i:47014595 original size:120 final size:119
Alignment explanation
Indices: 47014316--47014730 Score: 587
Period size: 120 Copynumber: 3.5 Consensus size: 119
47014306 CAAGATGATT
* * * *
47014316 TGTTGACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTTAGATGTTCTCAAATATAACAGA
1 TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
* * * * * ** *
47014381 TCTAGCTTTCAGATGTTTATACTGAAGCAGATCTAAGATGATTTGGTATTCTTG
66 TCTAGCCTTCAGAGGTTTATACTGAAGAAGGTCCAAGATGATTTGACATTCTTA
* * *
47014435 TGTTTACAGGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
1 TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
*
47014500 TCTAGCCTTCAGAGGTTTATATTGAAGTAAGGTCCAAGATGATTTGACATTCTTA
66 TCTAGCCTTCAGAGGTTTATACTGAAG-AAGGTCCAAGATGATTTGACATTCTTA
* * * * * *
47014555 TGTTTACAAGAAAGAAATCAAGGATATAGCAGATTTGACTCTTAGATGTTCTCAGACATGGCAGA
1 TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
* * *
47014620 TCTAACCTTCAGAGGTTTATACTGAAGCAAGGTTCAAGCTGATTTGACATTCTTA
66 TCTAGCCTTCAGAGGTTTATACTGAAG-AAGGTCCAAGATGATTTGACATTCTTA
47014675 TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
1 TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAA
47014731 CAGACTCAAG
Statistics
Matches: 263, Mismatches: 32, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
119 84 0.32
120 179 0.68
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (119 bp):
TGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAATATAGCAGA
TCTAGCCTTCAGAGGTTTATACTGAAGAAGGTCCAAGATGATTTGACATTCTTA
Found at i:47016451 original size:17 final size:17
Alignment explanation
Indices: 47016407--47016439 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47016397 TTTAGTCTTA
47016407 TATTTATTTTATTATTC
1 TATTTATTTTATTATTC
*
47016424 TATATATTTTATTATT
1 TATTTATTTTATTATT
47016440 TGTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (17 bp):
TATTTATTTTATTATTC
Found at i:47016553 original size:18 final size:18
Alignment explanation
Indices: 47016483--47016606 Score: 69
Period size: 18 Copynumber: 6.8 Consensus size: 18
47016473 TTTATAAGTG
* *
47016483 TTATTTTTATATGTATAA
1 TTATTTTTATATATATTA
*
47016501 TAATTGTTTAT-TATA-TA
1 TTATT-TTTATATATATTA
* * *
47016518 TTAATTCTCTCATA-ATTA
1 TTATTTTTAT-ATATATTA
47016536 TTATTTTTATATATATTA
1 TTATTTTTATATATATTA
*
47016554 TTATATTTTTACATATATTA
1 -T-TATTTTTATATATATTA
* *
47016574 TACATTTATT-TATACA-TA
1 T-TATTT-TTATATATATTA
*
47016592 TTATTTTTACATATA
1 TTATTTTTATATATA
47016607 AATTTTCATT
Statistics
Matches: 80, Mismatches: 17, Indels: 19
0.69 0.15 0.16
Matches are distributed among these distances:
16 5 0.06
17 16 0.20
18 25 0.31
19 16 0.20
20 18 0.22
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (18 bp):
TTATTTTTATATATATTA
Found at i:47016556 original size:21 final size:21
Alignment explanation
Indices: 47016532--47016596 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
47016522 TTCTCTCATA
47016532 ATTATTATTTTTATATATATT
1 ATTATTATTTTTATATATATT
*
47016553 ATTA-TATTTTTACATATATT
1 ATTATTATTTTTATATATATT
* * *
47016573 ATACATT-TATTTATACATATT
1 AT-TATTATTTTTATATATATT
47016594 ATT
1 ATT
47016597 TTTACATATA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
20 17 0.47
21 18 0.50
22 1 0.03
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTATTTTTATATATATT
Found at i:47018843 original size:47 final size:47
Alignment explanation
Indices: 47018791--47018897 Score: 108
Period size: 54 Copynumber: 2.1 Consensus size: 47
47018781 TGGTTGGACC
**
47018791 ATGGCAACAAGTGATAAGCGATAT-TTGTATAAGACCATAGCTGGGCT
1 ATGGCAACAAGTGATAAGCGAT-TCCCGTATAAGACCATAGCTGGGCT
*
47018838 ATGGCATCGAAAAACAAGTGATAAGTGATTCCCGTATAAGACCATAGCTGGGCT
1 ATGG---C----AACAAGTGATAAGCGATTCCCGTATAAGACCATAGCTGGGCT
47018892 ATGGCA
1 ATGGCA
47018898 TCGGAGAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
47 5 0.10
50 1 0.02
51 1 0.02
53 1 0.02
54 41 0.84
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (47 bp):
ATGGCAACAAGTGATAAGCGATTCCCGTATAAGACCATAGCTGGGCT
Found at i:47018878 original size:54 final size:52
Alignment explanation
Indices: 47018817--47018935 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 52
47018807 AGCGATATTT
* *
47018817 GTATAAGACCATAGCTGGGCTATGGCATCGAAAAACAAGTGATAAGTGATTCCC
1 GTATAAGACCATAGCTGGGCTATGGCATCGAAAAA-AAGTGATAAATG-CTCCC
* *
47018871 GTATAAGACCATAGCTGGGCTATGGCATCGGAGAAAAGTGATAAATGCTCCC
1 GTATAAGACCATAGCTGGGCTATGGCATCGAAAAAAAGTGATAAATGCTCCC
*
47018923 GTGTAAGACCATA
1 GTATAAGACCATA
47018936 TCCGAAATAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
52 16 0.27
53 11 0.18
54 33 0.55
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (52 bp):
GTATAAGACCATAGCTGGGCTATGGCATCGAAAAAAAGTGATAAATGCTCCC
Found at i:47018947 original size:52 final size:54
Alignment explanation
Indices: 47018817--47018953 Score: 134
Period size: 54 Copynumber: 2.6 Consensus size: 54
47018807 AGCGATATTT
* *** * * *
47018817 GTATAAGACCATAGCTGGGCTATGGCATCGAAAAACAAGTGATAAGTGATTCCC
1 GTATAAGACCATAGCCGAAATATGGCATCGGAAAACAAGTGATAAATGACTCCC
* *** *
47018871 GTATAAGACCATAGCTGGGCTATGGCATCGGAGAA-AAGTGATAAATG-CTCCC
1 GTATAAGACCATAGCCGAAATATGGCATCGGAAAACAAGTGATAAATGACTCCC
* *
47018923 GTGTAAGACCATATCCGAAATATGGCATCGG
1 GTATAAGACCATAGCCGAAATATGGCATCGG
47018954 TATGATATAT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 29 0.40
53 11 0.15
54 33 0.45
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.22
Consensus pattern (54 bp):
GTATAAGACCATAGCCGAAATATGGCATCGGAAAACAAGTGATAAATGACTCCC
Found at i:47019959 original size:13 final size:13
Alignment explanation
Indices: 47019941--47019965 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47019931 AGGCTATGGG
47019941 AGCCACACGGGCT
1 AGCCACACGGGCT
47019954 AGCCACACGGGC
1 AGCCACACGGGC
47019966 ATGTGCCCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.32, T:0.04
Consensus pattern (13 bp):
AGCCACACGGGCT
Found at i:47025538 original size:22 final size:21
Alignment explanation
Indices: 47025495--47025538 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
47025485 GGATAGAGAT
* *
47025495 TTTCCATGACATTATGAGAAA
1 TTTCCATGACAATATGAAAAA
*
47025516 TTTCCATGGCAATACTGAAAAA
1 TTTCCATGACAATA-TGAAAAA
47025538 T
1 T
47025539 ACCTAGTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (21 bp):
TTTCCATGACAATATGAAAAA
Found at i:47026293 original size:28 final size:28
Alignment explanation
Indices: 47026253--47026308 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
47026243 ATGTATAGTG
47026253 TCTTAGGAGTGAATAGTTTTAGGTCTTA
1 TCTTAGGAGTGAATAGTTTTAGGTCTTA
47026281 TCTTAGGAGTGAATAGTTTTAGGTCTTA
1 TCTTAGGAGTGAATAGTTTTAGGTCTTA
47026309 CTTTCGACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (28 bp):
TCTTAGGAGTGAATAGTTTTAGGTCTTA
Found at i:47032184 original size:49 final size:49
Alignment explanation
Indices: 47032057--47032361 Score: 537
Period size: 49 Copynumber: 6.3 Consensus size: 49
47032047 CCCTTCGGGA
* * *
47032057 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
47032104 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47032151 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
47032200 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47032249 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47032298 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47032347 CTTATCACATATATA
1 CTTATCACATATATA
47032362 TACCTCATAC
Statistics
Matches: 247, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 52 0.21
48 3 0.01
49 192 0.78
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47035957 original size:40 final size:40
Alignment explanation
Indices: 47035900--47036060 Score: 288
Period size: 40 Copynumber: 4.0 Consensus size: 40
47035890 CGAATACACG
* * *
47035900 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
47035940 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
47035980 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
47036020 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
47036059 TC
1 TC
47036061 GTCGAGACTT
Statistics
Matches: 118, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 4 0.03
40 114 0.97
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:47036183 original size:38 final size:38
Alignment explanation
Indices: 47036114--47036188 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 38
47036104 GAATTTTAAT
*
47036114 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* * * *
47036152 CCGGACATAATTTCT-TCATATAGTCAGCGGGTTTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
47036189 AACTCGGATT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:47038484 original size:49 final size:49
Alignment explanation
Indices: 47038357--47038626 Score: 458
Period size: 49 Copynumber: 5.6 Consensus size: 49
47038347 CCCTTCGGGA
* * *
47038357 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
47038404 CCTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
47038451 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47038500 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47038549 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47038598 CTTATCACATATATACACACTTATCACAT
1 CTTATCACATATATACACACTT-TCACAT
47038627 ATATACACAC
Statistics
Matches: 211, Mismatches: 7, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
47 51 0.24
48 3 0.01
49 151 0.72
50 6 0.03
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47038629 original size:68 final size:68
Alignment explanation
Indices: 47038549--47038693 Score: 283
Period size: 68 Copynumber: 2.1 Consensus size: 68
47038539 GCCATTAGGC
47038549 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47038614 ACA
66 ACA
47038617 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47038682 ACA
66 ACA
47038685 CTT-TCACAT
1 CTTATCACAT
47038694 TCATCACATC
Statistics
Matches: 77, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
67 6 0.08
68 71 0.92
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.32
Consensus pattern (68 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACA
Found at i:47038632 original size:117 final size:117
Alignment explanation
Indices: 47038500--47038729 Score: 460
Period size: 117 Copynumber: 2.0 Consensus size: 117
47038490 GCCATTAGGC
47038500 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47038565 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
47038617 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
47038682 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
47038730 TACCTCATAC
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 113 1.00
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.31
Consensus pattern (117 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
Found at i:47038636 original size:21 final size:19
Alignment explanation
Indices: 47038598--47038644 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
47038588 GCCATTAGGC
47038598 CTTATCACATATATACACA
1 CTTATCACATATATACACA
47038617 CTTATCACATATATACACA
1 CTTATCACATATATACACA
47038636 CTT-TCACAT
1 CTTATCACAT
47038645 TCATCACATC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (19 bp):
CTTATCACATATATACACA
Found at i:47038672 original size:49 final size:49
Alignment explanation
Indices: 47038617--47038729 Score: 226
Period size: 49 Copynumber: 2.3 Consensus size: 49
47038607 TATATACACA
47038617 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47038666 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
47038715 CTTATCACATATATA
1 CTTATCACATATATA
47038730 TACCTCATAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 64 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:47041231 original size:42 final size:41
Alignment explanation
Indices: 47041168--47041281 Score: 147
Period size: 42 Copynumber: 2.7 Consensus size: 41
47041158 TTCGTTTTCT
** * *
47041168 TGATGCCATAGTTCAACTATGGTTTTACACATCTTCACATAA
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
* *
47041210 TGATGCCATAGCCCAAATATGGTCTTACACATATTCATATA
1 TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
*
47041251 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 T-GATGCCATAGCCCAACTATGGTCTTACAC
47041282 GAATCACATA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 2 0.03
42 61 0.97
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.32
Consensus pattern (41 bp):
TGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:47041319 original size:46 final size:47
Alignment explanation
Indices: 47041211--47041371 Score: 151
Period size: 47 Copynumber: 3.6 Consensus size: 47
47041201 TTCACATAAT
* * *
47041211 GATGCCATAGCCCAAATATGGTCTTACAC-AT---AT-TCAT-ATATC
1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATAT-ATCACATC
* * *
47041253 GATGCCATAGCCCAGCTATGGTCTTACACGAATCA-CATATCTCAC-T-
1 GATGCCATATCCCAGATATGGTCTTACAC-AAT-AGCATATATCACATC
* * *
47041299 GATGCCATATCCTAGATATGGTCTTATACAGTAGCATATATCACATC
1 GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATC
47041346 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
47041372 TACGGAAATC
Statistics
Matches: 98, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
42 27 0.28
44 3 0.03
45 11 0.11
46 26 0.27
47 29 0.30
48 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTACACAATAGCATATATCACATC
Found at i:47041353 original size:47 final size:48
Alignment explanation
Indices: 47041250--47041375 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 48
47041240 ATATTCATAT
* * * *
47041250 ATCGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
* *
47041298 -T-GATGCCATATCCTAGATATGGTCTTATAC-AGT-AGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC
47041343 ATCGATGCCATATCCCAGATATGGTCTTATACG
1 ATCGATGCCATATCCCAGATATGGTCTTATACG
47041376 GAAATCACTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.16
46 26 0.39
47 29 0.43
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
Found at i:47041392 original size:7 final size:7
Alignment explanation
Indices: 47041380--47041415 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
47041370 TATACGGAAA
47041380 TCACTTG
1 TCACTTG
47041387 TCACTTG
1 TCACTTG
47041394 TCACTTG
1 TCACTTG
47041401 TCACTTG
1 TCACTTG
47041408 TCACTTG
1 TCACTTG
47041415 T
1 T
47041416 AGCCGAAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (7 bp):
TCACTTG
Found at i:47041449 original size:31 final size:31
Alignment explanation
Indices: 47041414--47041562 Score: 201
Period size: 31 Copynumber: 4.8 Consensus size: 31
47041404 CTTGTCACTT
*
47041414 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
47041445 GTAGCCGGAGCTACCATTTTTCACTGATCTG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
47041476 GCAGTCGGAA-CTACCACTTTTCACTGATCAG
1 GTAG-CCGAAGCTACCACTTTTCACTGATCAG
* *
47041507 GTAGCAGAAGCTACCACTTTTCATTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
47041538 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
47041563 TGTCATTTGT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 4 0.04
31 95 0.93
32 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Done.