Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 156 of 318
Found at i:48027178 original size:27 final size:27
Alignment explanation
Indices: 48027013--48027166 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
48027003 GTATTTTAGC
* *
48027013 AATTTTGTAAATCGAGGGTAAAACT-AT
1 AATTCTGTAAATCGAGGGTAAAA-TGGT
* * *
48027040 AGTTCTGTAAATCGAGGGTAAAACGAT
1 AATTCTGTAAATCGAGGGTAAAATGGT
*
48027067 AATTCTGTAAATTGAGGGTAAAATGGT
1 AATTCTGTAAATCGAGGGTAAAATGGT
* * *
48027094 AATTCTATAAATTGAGGGTATAATGGT
1 AATTCTGTAAATCGAGGGTAAAATGGT
* *
48027121 AATTCTGTAAATCGAGGGTAAAACGAT
1 AATTCTGTAAATCGAGGGTAAAATGGT
48027148 AATTCTGTAAATCGAGGGT
1 AATTCTGTAAATCGAGGGT
48027167 GCTTTGGTAA
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (27 bp):
AATTCTGTAAATCGAGGGTAAAATGGT
Found at i:48030805 original size:40 final size:40
Alignment explanation
Indices: 48030740--48030871 Score: 124
Period size: 40 Copynumber: 3.3 Consensus size: 40
48030730 TCTTCGGAAT
* * * *
48030740 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
* * * *
48030779 TTAACCCGGGTAT-AGCAACTCGCACAAATGCCTTTGCGTC
1 TTAGCCCGGGTATAAGC-ACTAGCACAAATGCCTTCGGGTC
* * * * *
48030819 TTAGCCCAGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
48030859 TTAGCCCGGGTAT
1 TTAGCCCGGGTAT
48030872 CATTCAAATG
Statistics
Matches: 71, Mismatches: 19, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
39 5 0.07
40 64 0.90
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGGTATAAGCACTAGCACAAATGCCTTCGGGTC
Found at i:48033892 original size:27 final size:27
Alignment explanation
Indices: 48033830--48033907 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
48033820 GGGCATATTC
48033830 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
48033857 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
48033884 GTCTTTTTACC-TATTAGGGGTATT
1 GTCATTTTACCATA-CAGGGGTATT
48033908 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 39 0.91
28 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:48033978 original size:27 final size:27
Alignment explanation
Indices: 48033952--48034202 Score: 133
Period size: 27 Copynumber: 9.3 Consensus size: 27
48033942 ATCTACAAAC
*
48033952 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
48033979 CAATGGTATTTCTA-TAATTTT-TCGAAAGT
1 CAAGGGTATTT-TAGTAATTTTGT--AAA-T
*
48034008 TAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTGTAAAT
* **
48034035 C-AGGTGTATTTTGGTAATTTTACAAAT
1 CAAGG-GTATTTTAGTAATTTTGTAAAT
** * ***
48034062 TGAGGGTA-TTTCGTTAATTTCACAAA-
1 CAAGGGTATTTTAG-TAATTTTGTAAAT
* **
48034088 C-AGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTAGTAATTTTGTAAAT
* *
48034114 CTAGGGGTATTTTGGTAATTTTGTAAA-
1 C-AAGGGTATTTTAGTAATTTTGTAAAT
*
48034141 CTAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* *****
48034168 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
*
48034195 CGAGGGTA
1 CAAGGGTA
48034203 AATCGATAAT
Statistics
Matches: 184, Mismatches: 25, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.01
26 47 0.26
27 104 0.57
28 12 0.07
29 18 0.10
30 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:48034105 original size:26 final size:26
Alignment explanation
Indices: 48034010--48034161 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 26
48034000 TCGAAAGTTA
**
48034010 AGGGTATTTCT-GTAATTTTGTAAA-T
1 AGGGTATTT-TGGTAATTTTACAAACT
*
48034035 CAGGTGTATTTTGGTAATTTTACAAATT
1 -AGG-GTATTTTGGTAATTTTACAAACT
* * *
48034063 GAGGGTATTTCGTTAATTTCACAAAC-
1 -AGGGTATTTTGGTAATTTTACAAACT
48034089 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAACT
**
48034116 AGGGGTATTTTGGTAATTTTGTAAACT
1 A-GGGTATTTTGGTAATTTTACAAACT
*
48034143 AGGGTATTTTAGTAATTTT
1 AGGGTATTTTGGTAATTTT
48034162 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.02
26 41 0.38
27 59 0.55
28 5 0.05
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.45
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACT
Found at i:48034108 original size:53 final size:53
Alignment explanation
Indices: 48034040--48034175 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 53
48034030 TAAATCAGGT
*
48034040 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGTTAATTTCACAAAC-AGTG
1 GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAG-G
* * ***
48034093 GTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACTAGG
1 GTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACTAGG
* ** *
48034146 GTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTATTTTGGTAATTTTACAAATTGAGGGTA
48034176 AAACGGTAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
52 1 0.01
53 65 0.94
54 3 0.04
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (53 bp):
GTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGG
Found at i:48034257 original size:81 final size:81
Alignment explanation
Indices: 48034154--48034334 Score: 254
Period size: 81 Copynumber: 2.2 Consensus size: 81
48034144 GGGTATTTTA
* * * * *
48034154 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAATCGATAATTCTGTA
1 GTAATTTTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
*
48034219 AATTGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* *
48034235 GTAATTCTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
***
48034300 AATCGAGGGTACTTTG
66 AATCGAGGGTAAAATG
*
48034316 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATTGAGG
48034335 ACATTTTAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (81 bp):
GTAATTTTATAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGTA
AATCGAGGGTAAAATG
Found at i:48034321 original size:27 final size:27
Alignment explanation
Indices: 48034154--48034310 Score: 233
Period size: 27 Copynumber: 5.8 Consensus size: 27
48034144 GGGTATTTTA
*
48034154 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
48034181 GTAATTTTGTAAATCGAGGGTAAATCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
48034208 ATAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
48034235 GTAATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
48034262 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
48034289 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
48034311 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:48037258 original size:15 final size:13
Alignment explanation
Indices: 48037226--48037259 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
48037216 AGCACATGGG
48037226 CGTGTGTCCTGGC
1 CGTGTGTCCTGGC
48037239 CGTGTGTCCTGGC
1 CGTGTGTCCTGGC
48037252 CGTGTGTC
1 CGTGTGTC
48037260 AGTAAATGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.29, G:0.38, T:0.32
Consensus pattern (13 bp):
CGTGTGTCCTGGC
Found at i:48038795 original size:46 final size:46
Alignment explanation
Indices: 48038745--48038920 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
48038735 TGTTTGGGCA
48038745 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
48038791 TCCGAACTCGTTGAGTTGAGTCTGAGTT--C-GA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
* *
48038836 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
48038884 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48038921 GCTGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
44 1 0.01
45 2 0.02
46 62 0.57
47 26 0.24
48 2 0.02
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:48038852 original size:93 final size:93
Alignment explanation
Indices: 48038741--48038912 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48038731 AGGATGTTTG
* *
48038741 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAG
*
48038806 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
48038834 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAG
48038899 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
48038913 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:48043640 original size:46 final size:46
Alignment explanation
Indices: 48043557--48043666 Score: 157
Period size: 46 Copynumber: 2.4 Consensus size: 46
48043547 CTTAGGAATG
* * *
48043557 GTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGTTGA
1 GTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTGA
* * *
48043603 GTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTTAGTTGA
1 GTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTGA
*
48043649 GTCTGAGTTCACTTATGG
1 GTCCGAGTTCACTTATGG
48043667 GCGGGTTACA
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 57 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (46 bp):
GTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTGA
Found at i:48047465 original size:43 final size:42
Alignment explanation
Indices: 48047417--48047552 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 42
48047407 GTCCCAAATG
48047417 TGGTCTTACATGTAATCACATATCAATGCCACTGTCTCAGACA
1 TGGTCTTACATGTAATCACATATCAATGCCACTGTC-CAGACA
* * * * * *
48047460 GGGTCTTACATG-AATCAAATA-CGATGTCAATGTCCTAGATA
1 TGGTCTTACATGTAATCACATATCAATGCCACTGTCC-AGACA
**
48047501 TGGTCTTACACATAATCACATATCAATGCCAAC-GTCCCAGACA
1 TGGTCTTACATGTAATCACATATCAATGCC-ACTGT-CCAGACA
48047544 TGGTCTTAC
1 TGGTCTTAC
48047553 TTGCACACAT
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
40 1 0.01
41 23 0.31
42 16 0.22
43 31 0.42
44 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
TGGTCTTACATGTAATCACATATCAATGCCACTGTCCAGACA
Found at i:48048688 original size:14 final size:15
Alignment explanation
Indices: 48048671--48048699 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
48048661 ACACGAAAAT
48048671 TTCACACA-TATAAA
1 TTCACACATTATAAA
48048685 TTCACACATTATAAA
1 TTCACACATTATAAA
48048700 CACAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (15 bp):
TTCACACATTATAAA
Found at i:48049251 original size:21 final size:20
Alignment explanation
Indices: 48049217--48049255 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
48049207 AAACTTGTAT
*
48049217 ATCTATTAACAAAAATTCATA
1 ATCTATCAAC-AAAATTCATA
*
48049238 ATCTATCAAGAAAATTCA
1 ATCTATCAACAAAATTCA
48049256 AAATACACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.51, C:0.15, G:0.03, T:0.31
Consensus pattern (20 bp):
ATCTATCAACAAAATTCATA
Found at i:48049505 original size:18 final size:18
Alignment explanation
Indices: 48049482--48049531 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
48049472 GATGATAGCC
48049482 TAAATT-TTATTTTTTATT
1 TAAATTATTATTTTTTA-T
*
48049500 TAAATTAATATTTATTTAT
1 TAAATTATTATTT-TTTAT
48049519 T-AATTATTATTTT
1 TAAATTATTATTTT
48049532 AACCTTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.04
18 16 0.57
19 7 0.25
20 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TAAATTATTATTTTTTAT
Found at i:48055976 original size:30 final size:30
Alignment explanation
Indices: 48055900--48055977 Score: 129
Period size: 30 Copynumber: 2.6 Consensus size: 30
48055890 TTCAATTATC
* *
48055900 AATTATGAAAAGGGAAGGTGACGACCATCA
1 AATTATGAAAAGGGATGGTGACGACCACCA
48055930 AATTATGAAAAGGGATGGTGACGACCACCA
1 AATTATGAAAAGGGATGGTGACGACCACCA
*
48055960 AATTATGAAAAAGGATGG
1 AATTATGAAAAGGGATGG
48055978 CTTCAGCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.44, C:0.12, G:0.27, T:0.18
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACGACCACCA
Found at i:48056637 original size:34 final size:33
Alignment explanation
Indices: 48056599--48056662 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
48056589 TAGCAATAAT
48056599 AGTCTAGGCCTGAGCCCATTTCAGTATCAGTGGC
1 AGTCTAGGCCTGAGCCCATTTCAGTA-CAGTGGC
* * *
48056633 AGTCTGGGCCTTAGCCCATTTTAGTACAGT
1 AGTCTAGGCCTGAGCCCATTTCAGTACAGT
48056663 ATGTAAACAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (33 bp):
AGTCTAGGCCTGAGCCCATTTCAGTACAGTGGC
Found at i:48058259 original size:40 final size:40
Alignment explanation
Indices: 48058215--48058400 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
48058205 GCTACTCATT
* * * *
48058215 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
48058255 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
48058295 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
48058335 CAAATGCTTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
48058376 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
48058401 CATCATTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 113 0.88
41 12 0.09
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:48066431 original size:39 final size:40
Alignment explanation
Indices: 48066354--48066536 Score: 225
Period size: 39 Copynumber: 4.7 Consensus size: 40
48066344 GCTACTCGTT
* * *
48066354 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
48066394 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
48066433 CAAATGCCTTCGGGACTT-TCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
48066472 C-AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48066512 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48066537 CATCATTCGA
Statistics
Matches: 127, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
37 3 0.02
38 12 0.09
39 67 0.53
40 40 0.31
41 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48075052 original size:39 final size:39
Alignment explanation
Indices: 48074943--48075124 Score: 265
Period size: 39 Copynumber: 4.6 Consensus size: 39
48074933 GTTCAAAACA
* * ** * *
48074943 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
48074983 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
48075023 CCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
48075062 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
48075101 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
48075125 CTCGAACATT
Statistics
Matches: 130, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 90 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:48079250 original size:40 final size:39
Alignment explanation
Indices: 48079213--48079431 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 39
48079203 GCTACTCGTT
*
48079213 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
48079253 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
48079293 CAAATGCCTTCGGACTTA--CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
48079330 CAAATGCCTTCGGACTTA--CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
48079367 C-AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48079407 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
48079432 CATCATTCGA
Statistics
Matches: 166, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
36 12 0.07
37 61 0.37
39 19 0.11
40 67 0.40
41 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48087311 original size:40 final size:40
Alignment explanation
Indices: 48087274--48087456 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
48087264 GCTACTCGTT
*
48087274 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
48087314 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
48087354 CAAATGCCTTC-GGACTTA--CCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
48087391 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
48087432 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
48087457 CATCATTCGA
Statistics
Matches: 131, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
37 33 0.25
38 4 0.03
39 7 0.05
40 74 0.56
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:48087402 original size:77 final size:80
Alignment explanation
Indices: 48087274--48087455 Score: 232
Period size: 77 Copynumber: 2.3 Consensus size: 80
48087264 GCTACTCGTT
*
48087274 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTA-CCCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
48087338 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
**
48087354 CAAATGCCTTC-GGACTTA-CCGGATT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
48087416 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
48087432 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTA-CCCGG
48087456 ACATCATTCG
Statistics
Matches: 90, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
76 3 0.03
77 49 0.54
78 17 0.19
79 6 0.07
80 15 0.17
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTACCCGGTTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:48095348 original size:80 final size:80
Alignment explanation
Indices: 48095230--48095416 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 80
48095220 AGTGATTCGT
* * * * *
48095230 ACAATTGCCTTCGGGAATTAGCCCAGATTTAGTGACTCGCACGAATGCCTTCGGGACTTAACCCG
1 ACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGAATTAACCCG
* * *
48095295 GTTTTGGTAAC-TCGC
65 GATTTAGTAACTTAGC
* * * *
48095310 ACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAATGCCTTCGGGAATTGACCCGG
1 ACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGAATTAACCCGG
*
48095375 ATTTAGTCACTTAGC
66 ATTTAGTAACTTAGC
*
48095390 ACAAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAATGCCTTCGGGACTTAGCCCGGA
48095417 CACCATTCGA
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 28 0.31
80 62 0.69
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
ACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGAATTAACCCGG
ATTTAGTAACTTAGC
Found at i:48095373 original size:39 final size:40
Alignment explanation
Indices: 48095198--48095415 Score: 206
Period size: 40 Copynumber: 5.5 Consensus size: 40
48095188 ACTCGATTGT
* * * * * *
48095198 CTTCGGGACATT-GCCCGGTTATAGTGATTCGTACAATTGC
1 CTTCGGGA-ATTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
48095238 CTTCGGGAATTAGCCCAGATTTAGTGACTCGCACGAATGC
1 CTTCGGGAATTAACCCGGTTTTAGTAACTCGCACAAATGC
* *
48095278 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGAATTAACCCGGTTTTAGTAACTCGCACAAATGC
* *
48095318 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCAC-AATGC
1 CTTCGGGAATTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * * *
48095357 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGAATTAACCCGGTTTTAGTAAC-TCGCACAAATGC
* *
48095398 CTTCGGGACTTAGCCCGG
1 CTTCGGGAATTAACCCGG
48095416 ACACCATTCG
Statistics
Matches: 151, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.21
40 101 0.67
41 19 0.13
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGAATTAACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:48096489 original size:21 final size:21
Alignment explanation
Indices: 48096464--48096506 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
48096454 AAGGATTTGA
48096464 ACCATGGCTAATAAGAACATC
1 ACCATGGCTAATAAGAACATC
48096485 ACCATGGCTAATAAGAACATC
1 ACCATGGCTAATAAGAACATC
48096506 A
1 A
48096507 AGTTAGCAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.23, G:0.14, T:0.19
Consensus pattern (21 bp):
ACCATGGCTAATAAGAACATC
Found at i:48097924 original size:40 final size:40
Alignment explanation
Indices: 48097879--48098045 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
48097869 CGGAATATAA
48097879 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48097919 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48097959 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
48097999 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-ATTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48098038 CCGGATAT
1 CCGGATAT
48098046 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 13 0.13
40 89 0.87
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48098029 original size:80 final size:79
Alignment explanation
Indices: 48097895--48098043 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
48097885 ATAATCACGT
* *
48097895 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
48097960 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
48097975 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
48098038 CCGGAT
64 CCGGAT
48098044 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:48105914 original size:40 final size:40
Alignment explanation
Indices: 48105869--48106036 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
48105859 CGGAATATAA
48105869 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48105909 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48105949 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48105989 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
48106029 CCGGATAT
1 CCGGATAT
48106037 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48106019 original size:80 final size:80
Alignment explanation
Indices: 48105885--48106034 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48105875 ATAATCACGT
*
48105885 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48105949 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48105965 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48106028 CCCGGAT
64 CCCGGAT
48106035 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48113545 original size:49 final size:50
Alignment explanation
Indices: 48113490--48113673 Score: 199
Period size: 49 Copynumber: 3.7 Consensus size: 50
48113480 ATCTATTGTG
* *
48113490 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
48113540 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * * * * **
48113590 CGATCATGTGTGTAGTACTAAGTGTAGGCCACTACGTATATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
48113640 AGGTCACGTGTGTAATACTAAGTACAGGCTACTA
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
48113674 TGCATACCAG
Statistics
Matches: 108, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
49 42 0.39
50 31 0.29
51 35 0.32
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:48113671 original size:101 final size:100
Alignment explanation
Indices: 48113497--48113686 Score: 263
Period size: 101 Copynumber: 1.9 Consensus size: 100
48113487 GTGAGGTCAC
* * * * *
48113497 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCACATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCCACTACGTATACCAGATGATTGGTCACATGTGTAATACTAAGT
* * *
48113562 GCAGGCTACTATGCGTACCCGATAACTTCGATCAT
66 ACAGGCTACTATGCATACCAGATAACTTCGATCAT
* * * *
48113597 GTGTGTAGTACTAAGTGTAGGCCACTACGTATATCAGATGGTTAGGTCACGTGTGTAATACTAAG
1 GTGTGTAGTACTAAGTGCAGGCCACTACGTATACCAGATGATT-GGTCACATGTGTAATACTAAG
48113662 TACAGGCTACTATGCATACCAGATA
65 TACAGGCTACTATGCATACCAGATA
48113687 GCTTTGGCTA
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
100 36 0.47
101 41 0.53
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCCACTACGTATACCAGATGATTGGTCACATGTGTAATACTAAGT
ACAGGCTACTATGCATACCAGATAACTTCGATCAT
Found at i:48125106 original size:30 final size:29
Alignment explanation
Indices: 48125036--48125111 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
48125026 ACGAACATTA
* *
48125036 AATTATGAAAAGGGATAGCTTCGGCTATC
1 AATTATGAAAAGGGATAACTTCAGCTATC
* *
48125065 AAGCTATGAAAAGGGATAACTTCAGTTATC
1 AA-TTATGAAAAGGGATAACTTCAGCTATC
*
48125095 GAATTACGAAAAGGGAT
1 -AATTATGAAAAGGGAT
48125112 GTGTTAGCCA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
29 2 0.05
30 35 0.90
31 2 0.05
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (29 bp):
AATTATGAAAAGGGATAACTTCAGCTATC
Found at i:48135590 original size:48 final size:48
Alignment explanation
Indices: 48135521--48135698 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
48135511 TAGGGTTATG
* * *
48135521 TGTGATCTCATGTAAGACCATGTCTAGGACATGGAATTTGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
* * *
48135569 TGTGATCCCATGTAAGACCATGTCTGGGATATGCCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
* * * *
48135617 TGTGATCCCATGTAAGACCATAT-TTGGTATATGGCATTGGCATCTATA
1 TGTGATCCCATGTAAGACCATGTCTAGG-ACATGGCATTGGCATCGATA
** *
48135665 TGTGATTTCGTGTAAGACCATGTCTAGGACATGG
1 TGTGATCCCATGTAAGACCATGTCTAGGACATGG
48135699 TCTCGACATA
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 3 0.03
48 106 0.95
49 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGATA
Found at i:48139472 original size:40 final size:40
Alignment explanation
Indices: 48139393--48139550 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
48139383 TTCGAATGAT
* * * *
48139393 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
48139433 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
48139473 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
48139513 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
48139551 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:48139571 original size:80 final size:80
Alignment explanation
Indices: 48139393--48139580 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
48139383 TTCGAATGAT
* *
48139393 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
48139458 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
48139473 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
48139534 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
48139554 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
48139581 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:48143378 original size:40 final size:40
Alignment explanation
Indices: 48143312--48143462 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
48143302 AAATTGAATG
* *
48143312 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
48143351 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
48143391 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
48143431 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
48143463 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:48143446 original size:80 final size:79
Alignment explanation
Indices: 48143314--48143462 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
48143304 ATTGAATGAT
*
48143314 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
48143379 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
48143393 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
48143456 TTTGTGC
63 ATTGTGC
48143463 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:48143477 original size:80 final size:79
Alignment explanation
Indices: 48143312--48143478 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
48143302 AAATTGAATG
*
48143312 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
48143377 TTGTGCTAGTGGCT
66 TTGTGCTAATGGCT
* * * * *
48143391 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
48143454 CATTTGTGC-ACATGGTT
63 CAATTGTGCTA-ATGGCT
48143471 ATATCCGG
1 ATATCCGG
48143479 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:48147558 original size:2 final size:2
Alignment explanation
Indices: 48147551--48147579 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
48147541 ATTTGGCCAC
48147551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48147580 CATCTCATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48147664 original size:65 final size:65
Alignment explanation
Indices: 48147594--48147725 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
48147584 TCATACATAT
48147594 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
48147659 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
48147724 CT
1 CT
48147726 TACCACATAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (65 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
Found at i:48147706 original size:32 final size:32
Alignment explanation
Indices: 48147605--48147706 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
48147595 TCACATTAGC
48147605 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
48147637 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
48147670 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
48147702 CATTT
1 CATTT
48147707 CGCATTAGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 22 0.43
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:48147771 original size:47 final size:47
Alignment explanation
Indices: 48147709--48147924 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
48147699 ACACATTTCG
* * * *
48147709 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48147756 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48147803 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
48147850 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48147897 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
48147925 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:48147815 original size:94 final size:94
Alignment explanation
Indices: 48147709--48147950 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
48147699 ACACATTTCG
*
48147709 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
48147774 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
48147803 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
48147868 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
48147897 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
48147951 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:48151420 original size:40 final size:40
Alignment explanation
Indices: 48151395--48151877 Score: 813
Period size: 40 Copynumber: 12.1 Consensus size: 40
48151385 GGACCCAGCT
*
48151395 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
48151435 CAGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151475 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151515 CGGATACATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
48151555 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151595 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151635 CGGATACATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151675 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
48151715 CGGATATATCACTAGCACAAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
48151755 CGGATACATCACTAGCATGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
48151795 CGGATATATCACTAGCACGAATGCTCTTTGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* * * *
48151835 CGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
48151875 CGG
1 CGG
48151878 CTATACAACT
Statistics
Matches: 418, Mismatches: 25, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 418 1.00
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
Found at i:48154145 original size:2 final size:2
Alignment explanation
Indices: 48154138--48154166 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
48154128 TTTGGCCACA
48154138 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48154167 CATCTCATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:48154259 original size:65 final size:65
Alignment explanation
Indices: 48154181--48154312 Score: 264
Period size: 65 Copynumber: 2.0 Consensus size: 65
48154171 TCATACATAT
48154181 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
48154246 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
48154311 CT
1 CT
48154313 TACCACATAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 67 1.00
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (65 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
Found at i:48154293 original size:32 final size:32
Alignment explanation
Indices: 48154192--48154293 Score: 93
Period size: 32 Copynumber: 3.2 Consensus size: 32
48154182 TCACATTAGC
48154192 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
48154224 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
48154257 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
48154289 CATTT
1 CATTT
48154294 CGCATTAGCC
Statistics
Matches: 51, Mismatches: 12, Indels: 14
0.66 0.16 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 22 0.43
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.09, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:48154358 original size:47 final size:47
Alignment explanation
Indices: 48154296--48154511 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
48154286 ACACATTTCG
* * * *
48154296 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48154343 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48154390 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
48154437 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
48154484 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
48154512 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:48154402 original size:94 final size:94
Alignment explanation
Indices: 48154296--48154537 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
48154286 ACACATTTCG
*
48154296 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
48154361 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
48154390 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
48154455 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
48154484 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
48154538 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:48157749 original size:40 final size:39
Alignment explanation
Indices: 48157584--48157767 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
48157574 AAATTGAATG
* * *
48157584 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
48157624 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
48157664 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
48157704 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
48157743 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
48157768 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:48157792 original size:80 final size:81
Alignment explanation
Indices: 48157624--48157812 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
48157614 GCTGGAAATT
* * * *
48157624 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
48157689 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
48157705 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
48157768 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
48157784 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
48157813 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:48160623 original size:16 final size:15
Alignment explanation
Indices: 48160585--48160623 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
48160575 TGGATTTACG
* *
48160585 TATCATGGATTTCTT
1 TATCTTGGATGTCTT
48160600 TATCTTGGATGTCTT
1 TATCTTGGATGTCTT
48160615 TATTCTTGG
1 TA-TCTTGG
48160624 CTTCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.15, C:0.13, G:0.18, T:0.54
Consensus pattern (15 bp):
TATCTTGGATGTCTT
Found at i:48163290 original size:49 final size:49
Alignment explanation
Indices: 48163222--48163464 Score: 270
Period size: 49 Copynumber: 4.9 Consensus size: 49
48163212 GCTATTGTAA
* * * *
48163222 GGTCACGTGTGTAGCACTAAGTGCAGGCTACTACATGTACCATATTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * * * **
48163271 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-TGTT
* * * *
48163321 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * **
48163371 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
* * *
48163421 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
48163465 AAGCTTCGGC
Statistics
Matches: 162, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 38 0.23
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
Found at i:48163358 original size:28 final size:28
Alignment explanation
Indices: 48163326--48163409 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
48163316 AACTTCGATC
48163326 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
48163354 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
48163376 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
48163404 ACGTGT
1 ACGTGT
48163410 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:48163412 original size:101 final size:98
Alignment explanation
Indices: 48163224--48163453 Score: 316
Period size: 100 Copynumber: 2.3 Consensus size: 98
48163214 TATTGTAAGG
* * * *
48163224 TCACGTGTGTAGCACTAAGTGCAGGCTACTACATGTACCATATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACT
* *
48163289 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* * *
48163324 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTT-GGTCACATGTGTAGTAC
* *
48163389 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGA
* *
48163423 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
48163454 TGCGTACCAG
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 30 0.26
100 44 0.38
101 42 0.36
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATGGTTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:48166200 original size:16 final size:15
Alignment explanation
Indices: 48166162--48166200 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
48166152 TGGATTTACG
* *
48166162 TATCATGGATTTCTT
1 TATCTTGGATGTCTT
48166177 TATCTTGGATGTCTT
1 TATCTTGGATGTCTT
48166192 TATTCTTGG
1 TA-TCTTGG
48166201 CTTCTTTGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.15, C:0.13, G:0.18, T:0.54
Consensus pattern (15 bp):
TATCTTGGATGTCTT
Found at i:48172442 original size:24 final size:22
Alignment explanation
Indices: 48172415--48172461 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
48172405 GAATTTTAAT
*
48172415 ATCTCTTGGTATACTATTCATATG
1 ATCTCTTCGT-TACT-TTCATATG
*
48172439 ATCTTTTCGTTACTTTCATATG
1 ATCTCTTCGTTACTTTCATATG
48172461 A
1 A
48172462 AAATAGACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 4 0.19
24 8 0.38
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (22 bp):
ATCTCTTCGTTACTTTCATATG
Found at i:48173423 original size:38 final size:38
Alignment explanation
Indices: 48173342--48173529 Score: 313
Period size: 38 Copynumber: 4.9 Consensus size: 38
48173332 TATGGTAACC
* * * *
48173342 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCATAGCT
48173382 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
48173420 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
48173458 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
48173496 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCA
48173530 CTCGAACATT
Statistics
Matches: 143, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
38 112 0.78
39 14 0.10
40 17 0.12
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.24
Consensus pattern (38 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGTATCATAGCT
Found at i:48181425 original size:39 final size:39
Alignment explanation
Indices: 48181341--48181531 Score: 310
Period size: 39 Copynumber: 4.9 Consensus size: 39
48181331 TATGGTAACC
* * * *
48181341 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
48181381 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
48181420 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
48181459 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
48181498 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
48181532 CTCGAACATT
Statistics
Matches: 143, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 127 0.89
40 16 0.11
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:48184769 original size:16 final size:16
Alignment explanation
Indices: 48184748--48184785 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
48184738 CTGGCAAATC
48184748 CCGAAATGCCAG-AAAG
1 CCGAAATG-CAGAAAAG
*
48184764 CCGAAATGCTGAAAAG
1 CCGAAATGCAGAAAAG
48184780 CCGAAA
1 CCGAAA
48184786 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.45, C:0.24, G:0.24, T:0.08
Consensus pattern (16 bp):
CCGAAATGCAGAAAAG
Found at i:48185039 original size:28 final size:28
Alignment explanation
Indices: 48185006--48185128 Score: 183
Period size: 28 Copynumber: 4.4 Consensus size: 28
48184996 GACTATGAGT
* *
48185006 GTGATTGGGCCTGACGGGCCATATGAAA
1 GTGATTGGGCCCGATGGGCCATATGAAA
*
48185034 GTGATTGAGCCCGATGGGCCATATGAAA
1 GTGATTGGGCCCGATGGGCCATATGAAA
* *
48185062 GTGATTGAGCCCGATGGGCCATATGAAT
1 GTGATTGGGCCCGATGGGCCATATGAAA
*
48185090 GTGATTGGGCCCGATGGGCCATATGAAT
1 GTGATTGGGCCCGATGGGCCATATGAAA
*
48185118 GAGATTGGGCC
1 GTGATTGGGCC
48185129 TAAAGGGGCC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 89 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.23
Consensus pattern (28 bp):
GTGATTGGGCCCGATGGGCCATATGAAA
Found at i:48187152 original size:29 final size:29
Alignment explanation
Indices: 48187088--48187152 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
48187078 GTGACGAGAT
**
48187088 CGGCACTAAGTGTGCGTGCTGGAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
* * *
48187117 TGACACTATGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
48187146 CGGCACT
1 CGGCACT
48187153 GGGTGTGCGA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:48187158 original size:29 final size:29
Alignment explanation
Indices: 48187091--48187165 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 29
48187081 ACGAGATCGG
* ** *
48187091 CACTAAGTGTGCGTGCTGGAAAAATATGA
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* *
48187120 CACTATGTGTGCAAGCTGGAAAAATACGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* *
48187149 CACTGGGTGTGCGAGCT
1 CACTAGGTGTGCAAGCT
48187166 CTGTAACACC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (29 bp):
CACTAGGTGTGCAAGCTGGAAAAATACGA
Found at i:48188690 original size:80 final size:80
Alignment explanation
Indices: 48188606--48188754 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
48188596 TATGGTAACC
* * * *
48188606 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
48188670 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
48188686 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
48188751 CCGG
66 CCGG
48188755 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:48188696 original size:40 final size:38
Alignment explanation
Indices: 48188647--48188754 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
48188637 ATCACGATTT
*
48188647 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
48188687 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
48188727 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
48188755 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:48198478 original size:29 final size:29
Alignment explanation
Indices: 48198445--48198575 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
48198435 TGACGAGATC
*
48198445 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
48198474 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
48198503 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
48198532 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
48198561 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
48198576 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:48204440 original size:18 final size:20
Alignment explanation
Indices: 48204397--48204442 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
48204387 GGATTTTACT
*
48204397 CAAGGTTTTTATTTGAAAGA
1 CAAGGTTTTTATATGAAAGA
*
48204417 -AGGGTTTTTA-ATGAAA-A
1 CAAGGTTTTTATATGAAAGA
48204434 CAAGGTTTT
1 CAAGGTTTT
48204443 CGATAAAACA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
17 1 0.05
18 12 0.55
19 9 0.41
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (20 bp):
CAAGGTTTTTATATGAAAGA
Found at i:48208860 original size:28 final size:28
Alignment explanation
Indices: 48208828--48208897 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
48208818 AATGAGATTG
48208828 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
48208856 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
48208884 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48208898 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:48216601 original size:28 final size:28
Alignment explanation
Indices: 48216569--48216638 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
48216559 AATGAGATTG
48216569 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
48216597 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
48216625 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48216639 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:48224429 original size:28 final size:28
Alignment explanation
Indices: 48224360--48224429 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
48224350 AATGAGATTG
*
48224360 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
48224388 GCACTAAGTGTGCGAGTTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
48224416 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
48224430 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 33 0.87
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:48227847 original size:32 final size:32
Alignment explanation
Indices: 48227806--48227869 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
48227796 AAACATTACT
48227806 GGGGAGATAAGACTGAAGGGGATCAAATTTCA
1 GGGGAGATAAGACTGAAGGGGATCAAATTTCA
48227838 GGGGAGATAAGACTGAAGGGGATCAAATTTCA
1 GGGGAGATAAGACTGAAGGGGATCAAATTTCA
48227870 TTCATTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.34, T:0.19
Consensus pattern (32 bp):
GGGGAGATAAGACTGAAGGGGATCAAATTTCA
Found at i:48227859 original size:17 final size:17
Alignment explanation
Indices: 48227806--48227859 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
48227796 AAACATTACT
48227806 GGGGAGATAAGACTGAA
1 GGGGAGATAAGACTGAA
* **
48227823 -GGG-GATCAA-ATTTCA
1 GGGGAGAT-AAGACTGAA
48227838 GGGGAGATAAGACTGAA
1 GGGGAGATAAGACTGAA
48227855 GGGGA
1 GGGGA
48227860 TCAAATTTCA
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
15 6 0.22
16 10 0.37
17 11 0.41
ACGTcount: A:0.37, C:0.07, G:0.41, T:0.15
Consensus pattern (17 bp):
GGGGAGATAAGACTGAA
Found at i:48228328 original size:16 final size:15
Alignment explanation
Indices: 48228288--48228329 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
48228278 AGATGATAAT
48228288 TATTAATATATAATTA
1 TATTAAT-TATAATTA
48228304 TA-TACATTATAATATA
1 TATTA-ATTATAAT-TA
48228320 TATTAATTAT
1 TATTAATTAT
48228330 TATGAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 8 0.35
16 13 0.57
17 2 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:48241618 original size:26 final size:27
Alignment explanation
Indices: 48241548--48241601 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
48241538 CCCTAGATTA
48241548 TAAAATGA-CTGTAATGCCACTGTAGGG
1 TAAAATGATC-GTAATGCCACTGTAGGG
48241575 TAAAATGATCGTAATGCC-CTGTAGGG
1 TAAAATGATCGTAATGCCACTGTAGGG
48241601 T
1 T
48241602 CTAATGACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 9 0.35
27 16 0.62
28 1 0.04
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (27 bp):
TAAAATGATCGTAATGCCACTGTAGGG
Found at i:48241787 original size:27 final size:27
Alignment explanation
Indices: 48241743--48241843 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
48241733 ATGGAGGAAG
*
48241743 TACTG-TACTAGTGACTATGCCACATT
1 TACTGTTACTAGTGGCTATGCCACATT
* *
48241769 TACTGTTACTGGTGGCTATGCCACAAT
1 TACTGTTACTAGTGGCTATGCCACATT
* * *
48241796 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTAGTGGCTATGCCACATT
* *
48241823 TACTGTTTCTAGTAGCTATGC
1 TACTGTTACTAGTGGCTATGC
48241844 TGCATTATTA
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 5 0.08
27 58 0.92
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
TACTGTTACTAGTGGCTATGCCACATT
Found at i:48242021 original size:28 final size:28
Alignment explanation
Indices: 48241985--48242039 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
48241975 ATTACACTGT
* *
48241985 ACTAATACTGCATTGGGCTTAGGCCCAC
1 ACTAATACTGCATAGGGCTAAGGCCCAC
* *
48242013 ACTATTACTGTATAGGGCTAAGGCCCA
1 ACTAATACTGCATAGGGCTAAGGCCCA
48242040 GACTGTACTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (28 bp):
ACTAATACTGCATAGGGCTAAGGCCCAC
Found at i:48245663 original size:27 final size:27
Alignment explanation
Indices: 48245577--48245681 Score: 120
Period size: 27 Copynumber: 3.9 Consensus size: 27
48245567 AAAATTACTA
48245577 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTATCG
* * * * *
48245604 AAATACCCTTATAGCGTAGAAATACCA
1 AAATACCCCTATAGGGTAGAATTATCG
*
48245631 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTATAGGGTAGAATTATCG
* * * *
48245658 AGATACCCTTATGGGGTAAAATTA
1 AAATACCCCTATAGGGTAGAATTA
48245682 CCATTTTGCC
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAATTATCG
Found at i:48245684 original size:54 final size:54
Alignment explanation
Indices: 48245567--48245684 Score: 175
Period size: 54 Copynumber: 2.2 Consensus size: 54
48245557 CTTGAATTAC
*
48245567 AAAATTACTAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTATAGCGT
1 AAAATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTATAGCGT
* * * *
48245621 AGAAA-TACCAAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTATGGGGT
1 A-AAATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTATAGCGT
48245675 AAAATTACCA
1 AAAATTACCA
48245685 TTTTGCCCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 3 0.05
54 51 0.89
55 3 0.05
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTATAGCGT
Found at i:48246249 original size:22 final size:22
Alignment explanation
Indices: 48246197--48246260 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
48246187 GCCAATTATT
*
48246197 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
48246219 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
48246241 CTGATTATGGCTATGTGCCA
1 CTGATTATGGCTTTGTGCCA
48246261 TTATTGTGGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:48246302 original size:20 final size:20
Alignment explanation
Indices: 48246262--48246302 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
48246252 TATGTGCCAT
* *
48246262 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCATCGTACCGA
*
48246282 TATTGTGGGCATCGTGCCGA
1 TATTGTGGGCATCGTACCGA
48246302 T
1 T
48246303 TATAGACCTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.17, G:0.32, T:0.37
Consensus pattern (20 bp):
TATTGTGGGCATCGTACCGA
Found at i:48246566 original size:25 final size:25
Alignment explanation
Indices: 48246528--48246576 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
48246518 ATTCTAATTT
* *
48246528 TGATTCTGTTACCTGATACTGATTC
1 TGATTCTGTCACCTAATACTGATTC
*
48246553 TGATTCTGTCACCTAATTCTGATT
1 TGATTCTGTCACCTAATACTGATT
48246577 TTGACTCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (25 bp):
TGATTCTGTCACCTAATACTGATTC
Found at i:48251310 original size:28 final size:29
Alignment explanation
Indices: 48251278--48251334 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
48251268 TACTTTTAAA
* *
48251278 TAACAACTAATATCTCAA-ATTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
* *
48251306 TAACATCTAAAATCACAAGGTTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
48251335 GGAAACATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.30
Consensus pattern (29 bp):
TAACAACTAAAATCACAAGATTCATCAAT
Found at i:48255586 original size:42 final size:43
Alignment explanation
Indices: 48255537--48255639 Score: 118
Period size: 44 Copynumber: 2.4 Consensus size: 43
48255527 TCCCAAATAG
* **
48255537 GGTCTTACACGAAATCA-AATACGATACTGATATCCCAGACAT
1 GGTCTTACACGAAATCATAAGACGATACCAATATCCCAGACAT
* * * *
48255579 GGTCTTACACATAAATCATAAGCCGATGCCAATGTCCCAGACAT
1 GGTCTTACAC-GAAATCATAAGACGATACCAATATCCCAGACAT
*
48255623 GGACTTACACGAAATCA
1 GGTCTTACACGAAATCA
48255640 CATATCAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
42 10 0.20
43 12 0.24
44 28 0.56
ACGTcount: A:0.37, C:0.25, G:0.16, T:0.22
Consensus pattern (43 bp):
GGTCTTACACGAAATCATAAGACGATACCAATATCCCAGACAT
Found at i:48265434 original size:93 final size:93
Alignment explanation
Indices: 48265327--48265497 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
48265317 CGCCCTAAGT
* *
48265327 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48265392 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
48265420 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48265485 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48265498 TCAACCATAT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48265494 original size:46 final size:46
Alignment explanation
Indices: 48265322--48265494 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
48265312 TAACCCGCCC
* * *
48265322 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
48265368 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
48265416 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
48265461 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48265495 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:48265951 original size:30 final size:30
Alignment explanation
Indices: 48265917--48265976 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
48265907 ATTTAATACT
*
48265917 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
48265947 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
48265977 TGCTCGAGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:48275143 original size:39 final size:39
Alignment explanation
Indices: 48275025--48275207 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
48275015 TCGTTCAAAC
* * ** * **
48275025 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
48275065 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
48275105 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
48275144 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
48275183 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
48275208 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:48280121 original size:13 final size:14
Alignment explanation
Indices: 48280105--48280140 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
48280095 CAATCTCATA
48280105 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
48280118 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
48280131 TCTC-ATTTCA
1 TCTCAATTTCA
48280141 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:48280130 original size:18 final size:19
Alignment explanation
Indices: 48280092--48280132 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
48280082 TGGTTCATGT
48280092 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
48280111 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
48280129 TTTC
1 TTTC
48280133 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:48280322 original size:39 final size:40
Alignment explanation
Indices: 48280255--48280390 Score: 100
Period size: 39 Copynumber: 3.5 Consensus size: 40
48280245 ACCAATATGG
* * *
48280255 CACCCAGTGCCTCATCGAA--TAGTTCGAAGCAATATTTGA
1 CACCCAGTGTCTCATCGAACCTAG-CCGAAGAAATATTTGA
* * * *
48280294 CACCCAGTGTCTCATCG-GCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGAAATATTTGA
* ** * * * *
48280332 TACCCAGTACCTCATTGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGTCTCATCGAACCTAGCCGAAGAAATAT-TTGA
48280373 CACCCAGTGTCTCATCGA
1 CACCCAGTGTCTCATCGA
48280391 CTCGAGGTCA
Statistics
Matches: 71, Mismatches: 21, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
38 17 0.24
39 34 0.48
40 4 0.06
41 16 0.23
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
CACCCAGTGTCTCATCGAACCTAGCCGAAGAAATATTTGA
Found at i:48280654 original size:18 final size:19
Alignment explanation
Indices: 48280628--48280666 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
48280618 TTTCAATTCA
48280628 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
48280647 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
48280665 AT
1 AT
48280667 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:48285693 original size:28 final size:28
Alignment explanation
Indices: 48285609--48285700 Score: 141
Period size: 29 Copynumber: 3.2 Consensus size: 28
48285599 TGTGAGCATA
48285609 CATATAAATGTGAATTGGGCCT-GATGGGC
1 CATATAAATGTG-ATTGGGCCTAG-TGGGC
*
48285638 CATATAAATGTGATTTGGGCCTAATGGGC
1 CATATAAATGTGA-TTGGGCCTAGTGGGC
48285667 CATATAAATGTGATTGGGCCTAGTGGGC
1 CATATAAATGTGATTGGGCCTAGTGGGC
48285695 CATATA
1 CATATA
48285701 CAGGTATGTG
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
CATATAAATGTGATTGGGCCTAGTGGGC
Found at i:48289774 original size:27 final size:27
Alignment explanation
Indices: 48289596--48289764 Score: 266
Period size: 27 Copynumber: 6.3 Consensus size: 27
48289586 TTAGTTTACC
*
48289596 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
48289623 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
48289650 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
48289677 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
48289704 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
48289731 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
48289758 AAATTAC
1 AAATTAC
48289765 TGAACTACCC
Statistics
Matches: 131, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 131 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:48289785 original size:54 final size:54
Alignment explanation
Indices: 48289596--48289790 Score: 171
Period size: 54 Copynumber: 3.6 Consensus size: 54
48289586 TTAGTTTACC
* ** * * ** *
48289596 AAATTACCAAAATACCCCTG-GTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTATCAAAATACCCC-GAGCCTGTAAAATTACCAAAATACCCCTAATTTGTA
* * ** *
48289650 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTAATTTGTA
* ** *
48289704 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTG
1 AAATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTAATTTGTA
* *
48289758 AAATTA-CTGAACTACCCTCGA-CCTGTAAAATTA
1 AAATTATC-AAAATACCC-CGAGCCTGTAAAATTA
48289791 TTGAAATACC
Statistics
Matches: 125, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTATCAAAATACCCCGAGCCTGTAAAATTACCAAAATACCCCTAATTTGTA
Found at i:48289785 original size:81 final size:81
Alignment explanation
Indices: 48289596--48289828 Score: 240
Period size: 81 Copynumber: 2.9 Consensus size: 81
48289586 TTAGTTTACC
** * * *
48289596 AAATTACCAAAATACCCCTG-GTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCA
1 AAATTACCAAAATACCCC-GAGCCTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCA
*
48289659 AAATACCCCTAGTTTGTA
64 AAATACCCCTAATTTGTA
* **
48289677 AAATTACCAAAATACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
*
48289742 ATACCCCTAATTTGTG
66 ATACCCCTAATTTGTA
** * ** * *
48289758 AAATTACTGAACTACCCTCGA-CCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCC-CGAGCCTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCA
*
48289821 AAGTACCC
64 AAATACCC
48289829 TCGATTTATA
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 5 0.04
81 123 0.94
82 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTACCAAAATACCCCGAGCCTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAATTTGTA
Found at i:48289788 original size:27 final size:27
Alignment explanation
Indices: 48289758--48289832 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
48289748 CTAATTTGTG
*
48289758 AAATTACTGAACTACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
* *
48289785 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGACCTGTA
*
48289812 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
48289833 TTTATAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 3 0.07
27 39 0.93
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTGTA
Found at i:48289871 original size:81 final size:81
Alignment explanation
Indices: 48289784--48289961 Score: 198
Period size: 81 Copynumber: 2.2 Consensus size: 81
48289774 CTCGACCTGT
* * *
48289784 AAAATTATTGAAATACCCTCGACTTGTA-A-AATTACCAAAGTACCCTCGATTTATAGAATTACC
1 AAAATTATTGAAATACCCTCGA-TT-TACAGAATTACCAAAGTACCATCGATTTACAAAATTACC
*
48289847 GTTTTACCTTCGATTTAC
64 GTTTTACCCTCGATTTAC
* * *** *** *
48289865 AGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCATCGATTTACAAAATTACTGT
1 AAAATTATTGAAATACCCTCGATTTACAGAATTACCAAAGTACCATCGATTTACAAAATTACCGT
48289930 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
*
48289946 AAAATTACTGAAATAC
1 AAAATTATTGAAATAC
48289962 TCTTGTAGGG
Statistics
Matches: 76, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
79 2 0.03
80 3 0.04
81 71 0.93
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (81 bp):
AAAATTATTGAAATACCCTCGATTTACAGAATTACCAAAGTACCATCGATTTACAAAATTACCGT
TTTACCCTCGATTTAC
Found at i:48289954 original size:27 final size:27
Alignment explanation
Indices: 48289824--48289955 Score: 176
Period size: 27 Copynumber: 4.9 Consensus size: 27
48289814 ATTACCAAAG
* *
48289824 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
48289851 TACCTTCGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
**
48289878 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
48289905 TACCATCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
48289932 TACCCTCGATTTACAAAATTACTG
1 TACCCTCGATTTACAGAATTACTG
48289956 AAATACTCTT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:48289986 original size:27 final size:27
Alignment explanation
Indices: 48289955--48290192 Score: 237
Period size: 27 Copynumber: 8.9 Consensus size: 27
48289945 CAAAATTACT
* * *
48289955 GAAATACTCTTGTAGGGTAGAAATGCC
1 GAAATACCCCTGTAGGGTAGAAATACC
*
48289982 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
48290009 AAAATACCCCTATAGGGTACAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
48290036 GAAATACCCCTGTAAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
48290063 AAAATACCCCTGTAGAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
*
48290090 GAAATACCCTTGTAGGGTAGAAATA-C
1 GAAATACCCCTGTAGGGTAGAAATACC
* * * * *
48290116 TAAATGCCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
48290143 GAAATACTCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAAATACC
* * *
48290170 GAGATACCCTTGTGGGGTA-AAAT
1 GAAATACCCCTGTAGGGTAGAAAT
48290193 GGTAGGTGTT
Statistics
Matches: 172, Mismatches: 38, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
26 24 0.14
27 148 0.86
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAAATACC
Found at i:48290163 original size:80 final size:79
Alignment explanation
Indices: 48289967--48290192 Score: 249
Period size: 80 Copynumber: 2.8 Consensus size: 79
48289957 AATACTCTTG
* * * * * * * *
48289967 TAGGGTAGAAATGCCGAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTACAAA
1 TAGGGTAGAATTACTGAAATACCC-TGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTA-AAA
*
48290032 TACCGAAATACCCCTG
64 TACCGAAATACCCCTA
* *
48290048 TAAGGTAGAATTACTAAAATACCCCTGT-AGAGTAGAATTACCGAAATACCCTTGTAGGGTAGAA
1 TAGGGTAGAATTACTGAAATA-CCCTGTAAG-GTAGAATTACCGAAATACCCTTGTAGGGTA-AA
* *
48290112 ATA-CTAAATGCCCCTA
63 ATACCGAAATACCCCTA
* *
48290128 TAGGGTAGAATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATACCCTTGTGGGGTAAAAT
1 TAGGGTAGAATTACTGAAATAC-CCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAT
48290193 GGTAGGTGTT
Statistics
Matches: 123, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
79 5 0.04
80 63 0.51
81 52 0.42
82 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (79 bp):
TAGGGTAGAATTACTGAAATACCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAAAATA
CCGAAATACCCCTA
Found at i:48290547 original size:73 final size:69
Alignment explanation
Indices: 48290410--48290574 Score: 217
Period size: 73 Copynumber: 2.4 Consensus size: 69
48290400 GAGGAAGTGT
* * * *
48290410 TCTGGCAGCTTCGCTGC-AA-TCTGGTGGCCTCGCCCCATATATCTGTTCTGGTGACTTCGTCAC
1 TCTGGCAGCCTCGCTGCAAATTCTGGTGGCCTCGCCCCATATATCTGTTCTGGTGACCTAGCCAC
48290473 AATA
66 AATA
* * *
48290477 TCTGGCAGCCTCGCTGCAAATTCTGGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAG
1 TCTGGCAGCCTCGCTGCAAATTCTGGTGGCCTCGCC-C---CATATATCTGTTCTGGTGACCTAG
48290542 CCACAATA
62 CCACAATA
48290550 TCTGGCAGCCTCGCTGCAAATTCTG
1 TCTGGCAGCCTCGCTGCAAATTCTG
48290575 TGGTGTGTAG
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
67 16 0.19
68 2 0.02
69 14 0.16
70 1 0.01
73 52 0.61
ACGTcount: A:0.18, C:0.29, G:0.22, T:0.30
Consensus pattern (69 bp):
TCTGGCAGCCTCGCTGCAAATTCTGGTGGCCTCGCCCCATATATCTGTTCTGGTGACCTAGCCAC
AATA
Found at i:48292185 original size:6 final size:6
Alignment explanation
Indices: 48292174--48292310 Score: 129
Period size: 6 Copynumber: 22.3 Consensus size: 6
48292164 GAGTAGCCTA
* *
48292174 ATTCTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
48292223 ATTCTG -TTACCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
48292273 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
48292311 AATGTTTCTT
Statistics
Matches: 110, Mismatches: 10, Indels: 22
0.77 0.07 0.15
Matches are distributed among these distances:
5 6 0.05
6 91 0.83
7 9 0.08
8 4 0.04
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:48292217 original size:19 final size:17
Alignment explanation
Indices: 48292177--48292301 Score: 81
Period size: 19 Copynumber: 6.8 Consensus size: 17
48292167 TAGCCTAATT
*
48292177 CTGATTCTGGTTCTGATT
1 CTGATTCT-GTTCTGATA
48292195 CTGATTCTGTTACCTGATA
1 CTGATTCTGTT--CTGATA
*
48292214 CTGATTCTGATTCTGTTA
1 CTGATTCTG-TTCTGATA
* *
48292232 CCTAATTCTGATTCTGATT
1 -CTGATTCTG-TTCTGATA
* *
48292251 TTGATTTTGATTCTG-TCA
1 CTGATTCTG-TTCTGAT-A
*
48292269 CCTGATTCTGATTCTGATT
1 -CTGATTCTG-TTCTGATA
48292288 CTGATTCTGATTCT
1 CTGATTCTG-TTCT
48292302 AGTTCTGATA
Statistics
Matches: 88, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
17 4 0.05
18 39 0.44
19 42 0.48
20 3 0.03
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (17 bp):
CTGATTCTGTTCTGATA
Found at i:48292219 original size:25 final size:25
Alignment explanation
Indices: 48292189--48292250 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
48292179 GATTCTGGTT
*
48292189 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
48292214 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
48292239 CTGATTCTGATT
1 CTGATTCTGATT
48292251 TTGATTTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:48292222 original size:31 final size:31
Alignment explanation
Indices: 48292177--48292296 Score: 138
Period size: 31 Copynumber: 3.9 Consensus size: 31
48292167 TAGCCTAATT
*
48292177 CTGATTCTGGTTCTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGATTCTGATTCTGTTAC
* *
48292208 CTGATACTGATTCTGATTCTG-TTACCTAATT--
1 CTGATTCTGATTCTGATTCTGATT--CT-GTTAC
* * *
48292239 CTGATTCTGATTTTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGATTCTGTTAC
48292270 CTGATTCTGATTCTGATTCTGATTCTG
1 CTGATTCTGATTCTGATTCTGATTCTG
48292297 ATTCTAGTTC
Statistics
Matches: 73, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
29 1 0.01
30 4 0.05
31 62 0.85
32 4 0.05
33 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGATTCTGTTAC
Found at i:48292249 original size:37 final size:37
Alignment explanation
Indices: 48292208--48292301 Score: 143
Period size: 37 Copynumber: 2.5 Consensus size: 37
48292198 ATTCTGTTAC
* *
48292208 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
48292245 CTGATTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
48292282 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
48292302 AGTTCTGATA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:48292272 original size:62 final size:62
Alignment explanation
Indices: 48292170--48292290 Score: 197
Period size: 62 Copynumber: 2.0 Consensus size: 62
48292160 CATCGAGTAG
* *
48292170 CCTAATTCTGATTCTGGTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTA
1 CCTAATTCTGATTCTGATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGTTA
* * *
48292232 CCTAATTCTGATTCTGATTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCTG
1 CCTAATTCTGATTCTGATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTG
48292291 ATTCTGATTC
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (62 bp):
CCTAATTCTGATTCTGATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTGTTA
Found at i:48294538 original size:27 final size:27
Alignment explanation
Indices: 48294465--48294538 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
48294455 TTAGTTTACC
* *
48294465 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
48294492 AAATTACTAAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
48294519 AAATTACCGAAATACCCTTG
1 AAATTACCAAAATACCCTTG
48294539 TAGGGTAGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:48294555 original size:27 final size:27
Alignment explanation
Indices: 48294523--48294799 Score: 272
Period size: 27 Copynumber: 10.0 Consensus size: 27
48294513 TTTATAAAAT
48294523 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
*
48294550 TGCCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
48294577 TACCGAAATTCCCCTGTATGGTAGAAATATCGAAA
1 TACCGAAATACCCTTGTA-GG--G---TA--GAAA
48294612 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* *
48294639 TACCGAAATACCC-TATAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
48294665 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
48294692 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
* * * *
48294719 TACCTAAATGCCCATGTAGGGTAGAAT
1 TACCGAAATACCCTTGTAGGGTAGAAA
** * *
48294746 TATTGAAATACTCC-TGTAAGGTAGAAT
1 TACCGAAATAC-CCTTGTAGGGTAGAAA
* * *
48294773 TATCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCTTGTAGGGTAGAAA
48294799 T
1 T
48294800 GGTAGGTGTT
Statistics
Matches: 210, Mismatches: 29, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
26 27 0.13
27 151 0.72
28 4 0.02
29 2 0.01
30 1 0.00
32 1 0.00
33 2 0.01
34 2 0.01
35 20 0.10
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
TACCGAAATACCCTTGTAGGGTAGAAA
Found at i:48294612 original size:35 final size:35
Alignment explanation
Indices: 48294573--48294650 Score: 120
Period size: 35 Copynumber: 2.2 Consensus size: 35
48294563 TTGTAGGGTA
* * *
48294573 GAAATACCGAAATTCCCCTGTATGGTAGAAATATC
1 GAAATACCGAAATACCCCTGTAGGGTAGAAATACC
*
48294608 GAAATACCGAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCGAAATACCCCTGTAGGGTAGAAATACC
48294643 GAAATACC
1 GAAATACC
48294651 CTATAGGGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.22
Consensus pattern (35 bp):
GAAATACCGAAATACCCCTGTAGGGTAGAAATACC
Found at i:48295152 original size:33 final size:32
Alignment explanation
Indices: 48295103--48295166 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
48295093 CTCGCTGCAA
* *
48295103 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
48295136 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
48295167 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:48295180 original size:27 final size:26
Alignment explanation
Indices: 48295128--48295187 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
48295118 ACATATATAT
*
48295128 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
48295154 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
48295181 ATATCTG
1 ATATCTG
48295188 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:48295339 original size:25 final size:25
Alignment explanation
Indices: 48295311--48295373 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
48295301 TTCACATTCC
* *
48295311 GATTCTGATTTTGTTACCTGATACT
1 GATTCTGATTCTGTTACCTAATACT
*
48295336 GATTCTGATTCTGTTACCTAATTCT
1 GATTCTGATTCTGTTACCTAATACT
*
48295361 GATTCTGGTTCTG
1 GATTCTGATTCTG
48295374 ATTCTGATTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (25 bp):
GATTCTGATTCTGTTACCTAATACT
Found at i:48295345 original size:6 final size:6
Alignment explanation
Indices: 48295306--48295498 Score: 119
Period size: 6 Copynumber: 31.3 Consensus size: 6
48295296 TTGCATTCAC
* * * *
48295306 ATTCCG ATTCTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
48295356 ATTCTG ATTCTG GTTCTG ATTCTG ATTC-G GTTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
48295405 ATTCTG -TTGCCTA ATTCTG ATTCTG ATTTTG ATTTTG ATTCTG -TCACCTG
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
48295455 ATTCTG ATTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
48295499 AATGTTTCTT
Statistics
Matches: 146, Mismatches: 24, Indels: 34
0.72 0.12 0.17
Matches are distributed among these distances:
5 11 0.08
6 116 0.79
7 11 0.08
8 8 0.05
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:48295389 original size:37 final size:37
Alignment explanation
Indices: 48295328--48295410 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
48295318 ATTTTGTTAC
* * *
48295328 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCGGTTACCTAATACTGATT
* *
48295365 CTGGTTCTGATTCTGATTCGGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCGGTTACCTAATACTGATT
48295402 CTGATTCTG
1 CTGATTCTG
48295411 TTGCCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCGGTTACCTAATACTGATT
Found at i:48295399 original size:25 final size:25
Alignment explanation
Indices: 48295371--48295432 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
48295361 GATTCTGGTT
*
48295371 CTGATTCTGATTCGGTTACCTGATA
1 CTGATTCTGATTCGGTTACCTAATA
* * *
48295396 CTGATTCTGATTCTGTTGCCTAATT
1 CTGATTCTGATTCGGTTACCTAATA
48295421 CTGATTCTGATT
1 CTGATTCTGATT
48295433 TTGATTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.18, C:0.19, G:0.18, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCGGTTACCTAATA
Found at i:48295408 original size:62 final size:62
Alignment explanation
Indices: 48295306--48295471 Score: 251
Period size: 62 Copynumber: 2.7 Consensus size: 62
48295296 TTGCATTCAC
* *
48295306 ATTCCGATTCTGATTTTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * *
48295368 GTTCTGATTCTGATTCGGTTACCTGATACTGATTCTGATTCTGTTGCCTAATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
* * * *
48295430 ATTTTGATTTTGATTCTGTCACCTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCT
48295472 AATTCTCATT
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 93 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTG
Found at i:48295431 original size:37 final size:37
Alignment explanation
Indices: 48295390--48295477 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
48295380 ATTCGGTTAC
* **
48295390 CTGATACTGATTCTGATTCTGTTGCCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* * *
48295427 CTGATTTTGATTTTGATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
*
48295464 CTGATTCTAATTCT
1 CTGATTCTGATTCT
48295478 CATTTTGATT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Done.