Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 158 of 318
Found at i:48619587 original size:53 final size:53
Alignment explanation
Indices: 48619472--48619613 Score: 158
Period size: 53 Copynumber: 2.6 Consensus size: 53
48619462 AGGAAATCAT
* * * * * * *
48619472 GTAAGATCATGTCAAGACATGGCATTGATAAATTACTATAAGACAAAGATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT-C-ATAAGACAAAGATACCAC
* * * *
48619527 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGACAAAGATACCAC
*
48619580 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT
48619614 TAAAAAGGAA
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 45 0.62
54 1 0.01
55 27 0.37
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGACAAAGATACCAC
Found at i:48627138 original size:14 final size:14
Alignment explanation
Indices: 48627119--48627146 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
48627109 AATGCATAAT
48627119 AGCATTTAATTTCA
1 AGCATTTAATTTCA
48627133 AGCATTTAATTTCA
1 AGCATTTAATTTCA
48627147 TACATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (14 bp):
AGCATTTAATTTCA
Found at i:48646510 original size:47 final size:46
Alignment explanation
Indices: 48646445--48646656 Score: 162
Period size: 47 Copynumber: 4.5 Consensus size: 46
48646435 TTTGTGCACC
*
48646445 AGTGTAAGA-CATGTCTGGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACA-TATGAGAGCT
* * *
48646491 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAAACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCA--CATATGAGAGCT
* * * * * * *
48646539 AGTGTAAG-TCATGTTTGGGACATGCATCAGCCATACTATGATAACC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCACA-TATGAGAGCT
* * * * ** *
48646585 ACTGTAAGACCATGTCTGGGACACGGCATCGGCACAGAGATGAGTTCC
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGGC-CACATATGAGAGCT
*
48646633 AGAGTAAGA-CATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
48646657 TAACACCCCG
Statistics
Matches: 130, Mismatches: 27, Indels: 18
0.74 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 27 0.21
47 56 0.43
48 41 0.32
49 5 0.04
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCACATATGAGAGCT
Found at i:48646640 original size:94 final size:93
Alignment explanation
Indices: 48646443--48646656 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 93
48646433 GATTTGTGCA
* * * * * *
48646443 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAACCACTGTAAGACCATGTCT
*
48646508 GGGACATGGCATCGGCATCCAAACGAGGG
66 GGGACACGGCATCGGCA-CCAAACGAGGG
* * * * *
48646537 CTAGTGTAAGTCATGTTTGGGACATGCATCAGCCATACTATGATAACCACTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAACCACTGTAAGACCATGTCT
* **
48646602 GGGACACGGCATCGGCA-CAGAGATGAGTT
66 GGGACACGGCATCGGCACCA-A-ACGAGGG
*
48646631 CCAGAGTAAGACATGTCTGGGACATG
1 CCAGTGTAAGACATGTCTGGGACATG
48646657 TAACACCCCG
Statistics
Matches: 99, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
92 2 0.02
93 1 0.01
94 96 0.97
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (93 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACACTATGAGAACCACTGTAAGACCATGTCT
GGGACACGGCATCGGCACCAAACGAGGG
Found at i:48649562 original size:25 final size:25
Alignment explanation
Indices: 48649534--48649612 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
48649524 ACTCGGCCCT
*
48649534 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
48649559 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
48649581 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
48649606 ATCACAT
1 ATCACAT
48649613 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:48649658 original size:49 final size:47
Alignment explanation
Indices: 48649484--48650021 Score: 833
Period size: 47 Copynumber: 11.3 Consensus size: 47
48649474 CCCTTCGGGA
* * * * * * *
48649484 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48649531 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48649578 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48649625 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48649674 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
48649723 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48649772 CTTATAACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
48649819 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48649866 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48649913 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
48649960 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
48650007 CTTATCACATATATA
1 CTTATCACATATATA
48650022 TATCTCATAC
Statistics
Matches: 458, Mismatches: 27, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
47 326 0.71
49 126 0.28
51 6 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48649921 original size:22 final size:22
Alignment explanation
Indices: 48649894--48650016 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
48649884 TTTCACATTC
48649894 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
48649916 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
* *
48649940 CATCACATCGGCCATTAGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
48649963 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
48649987 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
48650010 ATCACAT
1 ATCACAT
48650017 ATATATATCT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 28 0.41
23 10 0.14
24 10 0.14
25 21 0.30
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:48657589 original size:40 final size:40
Alignment explanation
Indices: 48657544--48657710 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
48657534 CGGAATATAA
48657544 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48657584 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48657624 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48657664 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48657703 CCGGATAT
1 CCGGATAT
48657711 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48657694 original size:80 final size:79
Alignment explanation
Indices: 48657560--48657710 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
48657550 ATAATCACGT
*
48657560 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
48657625 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
48657640 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
48657703 CCGGATAT
64 CCGGATAT
48657711 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:48667618 original size:40 final size:40
Alignment explanation
Indices: 48667573--48667739 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
48667563 CGGAATATAA
48667573 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48667613 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48667653 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48667693 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48667732 CCGGATAT
1 CCGGATAT
48667740 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48667723 original size:80 final size:79
Alignment explanation
Indices: 48667589--48667739 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
48667579 ATAATCACGT
*
48667589 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
48667654 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
48667669 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
48667732 CCGGATAT
64 CCGGATAT
48667740 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:48681669 original size:46 final size:44
Alignment explanation
Indices: 48681619--48681794 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 44
48681609 TGTTTGGGCA
48681619 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
48681665 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
48681712 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* * *
48681758 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48681795 GGGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:48681725 original size:93 final size:93
Alignment explanation
Indices: 48681615--48681786 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48681605 AGGATGTTTG
* * *
48681615 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
48681680 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
48681708 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
48681773 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
48681787 ACTTATGGGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:48684756 original size:15 final size:15
Alignment explanation
Indices: 48684736--48684804 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
48684726 GTATCTTGGG
48684736 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
48684751 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
48684766 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
48684781 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
48684796 TTTCTTTAT
1 TTTCTTTAT
48684805 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:48684805 original size:30 final size:30
Alignment explanation
Indices: 48684727--48684814 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
48684717 CATAGTATCG
* * * *
48684727 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
48684757 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
48684787 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
48684815 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:48687773 original size:21 final size:22
Alignment explanation
Indices: 48687732--48687773 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
48687722 ACAAAGAAGA
48687732 CCACACGGGCATGTCACCCCTT
1 CCACACGGGCATGTCACCCCTT
* *
48687754 CCACACTGGCGTGT-ACCCCT
1 CCACACGGGCATGTCACCCCT
48687774 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.17, C:0.45, G:0.19, T:0.19
Consensus pattern (22 bp):
CCACACGGGCATGTCACCCCTT
Found at i:48691933 original size:23 final size:23
Alignment explanation
Indices: 48691907--48691954 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
48691897 CTCATGCAAA
48691907 GCAACATA-ATATCATACATGG-AT
1 GCAACATACATAT-A-ACATGGCAT
48691930 GCAACATACATATAACATGGCAT
1 GCAACATACATATAACATGGCAT
48691953 GC
1 GC
48691955 TCAAATACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.26
23 13 0.57
24 4 0.17
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (23 bp):
GCAACATACATATAACATGGCAT
Found at i:48692047 original size:27 final size:28
Alignment explanation
Indices: 48691989--48692051 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 28
48691979 GAACAAATCC
48691989 ATCATTTTACCTTATCAAGGTATTATAG
1 ATCATTTTACCTTATCAAGGTATTATAG
*
48692017 -TCATTTTACCTTAT-AAGGGTATT-TCG
1 ATCATTTTACCTTATCAA-GGTATTATAG
48692043 ATCATTTTA
1 ATCATTTTA
48692052 TTACATAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (28 bp):
ATCATTTTACCTTATCAAGGTATTATAG
Found at i:48694587 original size:40 final size:40
Alignment explanation
Indices: 48694475--48694620 Score: 127
Period size: 40 Copynumber: 3.6 Consensus size: 40
48694465 TTCGAATGGT
** * * *
48694475 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGAGTAA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTCACTAA
* * * *
48694516 AACCGGGTTAAGTCCCGAAGGC-ATTCATGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCAATT-GTGCGAGTCACTAA
* *
48694556 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTCACTA-A
*
48694597 A-CCGGGC-AATGTCCCGAAGACAAT
1 ATCCGGGCTAA-GTCCCGAAGGCAAT
48694621 CGAGCTAGTC
Statistics
Matches: 86, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 56 0.65
41 28 0.33
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTCACTAA
Found at i:48696914 original size:10 final size:10
Alignment explanation
Indices: 48696899--48696934 Score: 72
Period size: 10 Copynumber: 3.6 Consensus size: 10
48696889 TGGCTAGCAA
48696899 CAAACTTATT
1 CAAACTTATT
48696909 CAAACTTATT
1 CAAACTTATT
48696919 CAAACTTATT
1 CAAACTTATT
48696929 CAAACT
1 CAAACT
48696935 CTTGGTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (10 bp):
CAAACTTATT
Found at i:48701709 original size:16 final size:17
Alignment explanation
Indices: 48701690--48701728 Score: 71
Period size: 16 Copynumber: 2.4 Consensus size: 17
48701680 AGTGTAATGC
48701690 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
48701706 CCCAAAAATCCCGAAAT
1 CCCAAAAATCCCGAAAT
48701723 CCCAAA
1 CCCAAA
48701729 CTTTCTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.49, C:0.38, G:0.05, T:0.08
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:48703353 original size:40 final size:39
Alignment explanation
Indices: 48703309--48703529 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
48703299 GCTACTCGTT
* * *
48703309 CAAATGCCTTTGGGACATAGCCTGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCGGATT-TAGTAACTCGCA
* *
48703349 CAAATGCCTTTGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCC-GGATTTAGTAACTCGCA
* *
48703389 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCGGATTTAGTAACTCGCA
*
48703428 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCGGATTTAGTAACTCGCA
* * * * *
48703468 CCAATGCCTTC-GGATCTTAGTCCGGATATCGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCGGATTTAGTAAC-TCGCA
*
48703509 CAAA-GCTTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
48703530 CAGACATCAT
Statistics
Matches: 155, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 39 0.25
40 101 0.65
41 15 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCGGATTTAGTAACTCGCA
Found at i:48711517 original size:39 final size:40
Alignment explanation
Indices: 48711403--48711624 Score: 242
Period size: 39 Copynumber: 5.7 Consensus size: 40
48711393 GCTACTCGTT
* *
48711403 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
48711443 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
48711483 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
48711522 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * *
48711561 CCAATGCCTTC-GGATCTT-AGTCGGATATAGT-CCTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
48711600 CAAA-GCCTTCGGGACTTACCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
48711625 CATCATTCGA
Statistics
Matches: 154, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
38 12 0.08
39 91 0.59
40 49 0.32
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:48711566 original size:78 final size:80
Alignment explanation
Indices: 48711405--48711624 Score: 283
Period size: 78 Copynumber: 2.8 Consensus size: 80
48711395 TACTCGTTCA
*
48711405 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
*
48711470 TTAGTAACTTGCACC
66 TTAGTAACTCGCACC
* *
48711485 AATGCCTTTGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGGA
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
48711547 TTTAGTAACTCGCACC
65 TTTAGTAACTCGCACC
* * * * *
48711563 AATGCCTTC-GGATCTTAG-TCGGATATAGT-CCTTAGCACAAA-GCCTTCGGGACTTACCCCGG
1 AATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGG
48711624 A
64 A
48711625 CATCATTCGA
Statistics
Matches: 125, Mismatches: 9, Indels: 14
0.84 0.06 0.09
Matches are distributed among these distances:
77 9 0.07
78 67 0.54
79 38 0.30
80 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCACC
Found at i:48716888 original size:28 final size:27
Alignment explanation
Indices: 48716818--48716949 Score: 88
Period size: 28 Copynumber: 4.7 Consensus size: 27
48716808 CGGTGACGAG
*
48716818 ATTGGCACTGA-GTGTGCGAGCTTGTAAT
1 ATTGGCACT-ATGTGTGCGAGATTG-AAT
* * * *
48716846 GTACGGCACTA-GTGTGCGAGTTTGGACT
1 AT-TGGCACTATGTGTGCGAGATT-GAAT
* *
48716874 ATTGGCACTATGTGTGCGGGCTTGAAT
1 ATTGGCACTATGTGTGCGAGATTGAAT
* * *
48716901 CATATGGCACTAAGTGTGCGTGATTGAGT
1 -AT-TGGCACTATGTGTGCGAGATTGAAT
*
48716930 ATTAAGCACTATGTGTGCGA
1 ATT-GGCACTATGTGTGCGA
48716950 ACTCTACACA
Statistics
Matches: 82, Mismatches: 16, Indels: 12
0.75 0.15 0.11
Matches are distributed among these distances:
27 11 0.13
28 43 0.52
29 28 0.34
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (27 bp):
ATTGGCACTATGTGTGCGAGATTGAAT
Found at i:48716910 original size:56 final size:56
Alignment explanation
Indices: 48716818--48716949 Score: 144
Period size: 56 Copynumber: 2.3 Consensus size: 56
48716808 CGGTGACGAG
* *
48716818 ATTGGCACTGA-GTGTGCGAGCTTGTAATGTACGGCACT-AGTGTGCGAGTTTGGACT
1 ATTGGCACT-ATGTGTGCGAGCTTGTAATATACGGCACTAAGTGTGCGAGATT-GACT
* * * *
48716874 ATTGGCACTATGTGTGCGGGCTTG-AATCATATGGCACTAAGTGTGCGTGATTGAGT
1 ATTGGCACTATGTGTGCGAGCTTGTAAT-ATACGGCACTAAGTGTGCGAGATTGACT
*
48716930 ATTAAGCACTATGTGTGCGA
1 ATT-GGCACTATGTGTGCGA
48716950 ACTCTACACA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
55 4 0.06
56 35 0.55
57 25 0.39
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (56 bp):
ATTGGCACTATGTGTGCGAGCTTGTAATATACGGCACTAAGTGTGCGAGATTGACT
Found at i:48723596 original size:46 final size:46
Alignment explanation
Indices: 48723546--48723721 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
48723536 TGGTTGAGCA
48723546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48723592 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48723637 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48723685 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48723722 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48723702 original size:93 final size:93
Alignment explanation
Indices: 48723543--48723714 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
48723533 GGATGGTTGA
* *
48723543 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48723608 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48723636 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48723701 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
48723715 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48731175 original size:46 final size:46
Alignment explanation
Indices: 48731125--48731295 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
48731115 TGGTTGAGCA
48731125 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48731171 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
48731216 CATCCGAACTCGTTGAGTTGAGT-----TTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
48731259 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48731296 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 10, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
41 19 0.19
42 5 0.05
43 8 0.08
45 7 0.07
46 41 0.41
47 21 0.21
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48731276 original size:88 final size:89
Alignment explanation
Indices: 48731122--48731288 Score: 264
Period size: 88 Copynumber: 1.8 Consensus size: 89
48731112 GGATGGTTGA
* *
48731122 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-C---TTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48731187 TGAGTCCGAGTTCGTGAGATGTAACTAG
62 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48731215 GCATCCGAACTCGTTGAGTTGAGT-TTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGAG
48731279 TCCGAGTTCG
66 TCCGAGTTCG
48731289 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
88 47 0.66
93 24 0.34
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (89 bp):
GCATCCGAACTCGTTGAGTTGAGTCTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTTGAG
TCCGAGTTCGTGAGATGTAACTAG
Found at i:48735610 original size:29 final size:29
Alignment explanation
Indices: 48735549--48735650 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
48735539 AGTTTGCTTC
* * * *
48735549 GGCACTGAGTGTGCGAGCTTGTAATGTAC
1 GGCACTAAGTGTGCGAGCTTGGAATATAT
* *
48735578 GGCACTAAGTGTGCGAGTTTGGACTATAT
1 GGCACTAAGTGTGCGAGCTTGGAATATAT
* *
48735607 GGCACTATGTGTGCGGGCTT-GAATCATAT
1 GGCACTAAGTGTGCGAGCTTGGAAT-ATAT
48735636 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
48735651 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTTGGAATATAT
Found at i:48741545 original size:79 final size:80
Alignment explanation
Indices: 48741436--48741658 Score: 301
Period size: 79 Copynumber: 2.8 Consensus size: 80
48741426 TACTCGTTCA
* *
48741436 AATGCCTTCGG-GACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGAG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
*
48741500 TTTAGTAACTTGCACC
65 TTTAGTAACTCGCACC
* *
48741516 AATGCCTTTGG-GCTTTGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGAGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
48741579 TTTAGTAACTCGCACC
65 TTTAGTAACTCGCACC
* * * * *
48741595 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGAGCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
48741659 CATCATTCGA
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.56
80 46 0.36
81 9 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
AATGCCTTCGGAGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCACC
Found at i:48741642 original size:119 final size:120
Alignment explanation
Indices: 48741434--48741658 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
48741424 GCTACTCGTT
*
48741434 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * * *
48741499 ATTTAGTAACTTGCACCAATGCCTTTGGG-CTTTGCCCGGAATTAGTAACTCGCA
66 ATATAGTAACTTGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * **
48741553 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
48741616 GGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTT-GCACCAAAGCCTTCGGGACTTAGCCCGGA
48741659 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 3 0.03
119 74 0.80
120 15 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTGCACCAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:48741658 original size:40 final size:40
Alignment explanation
Indices: 48741416--48741658 Score: 271
Period size: 40 Copynumber: 6.1 Consensus size: 40
48741406 GGAATTTAGG
** *
48741416 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
48741456 CGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * * * *
48741496 CGGATTTAGTAACTTGCACCAATGCCTTTGGG-CTTTGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
48741535 CGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
48741575 CGGATTTAGTAACTCGCACCAATGCCTTC-GGATCTTAGTC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* *
48741615 CGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
48741655 CGGA
1 CGGA
48741659 CATCATTCGA
Statistics
Matches: 169, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
39 36 0.21
40 123 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:48744720 original size:29 final size:29
Alignment explanation
Indices: 48744655--48744738 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
48744645 GCATGAGTAT
* * *
48744655 AATATGATTTAGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATAAG
** *
48744684 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATAAG
* *
48744713 AATATGAACTGGG-ATAAATGGGCCAT
1 AATATGAATTGGGCCT-AATGGGCCAT
48744739 TTGAACAAGA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
28 1 0.02
29 42 0.98
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATAAG
Found at i:48746901 original size:40 final size:40
Alignment explanation
Indices: 48746856--48747022 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
48746846 CGGAATATAA
48746856 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48746896 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48746936 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48746976 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48747015 CCGGATAT
1 CCGGATAT
48747023 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48747006 original size:80 final size:79
Alignment explanation
Indices: 48746872--48747022 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
48746862 ATAATCACGT
*
48746872 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
48746937 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
48746952 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
48747015 CCGGATAT
64 CCGGATAT
48747023 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:48753750 original size:16 final size:16
Alignment explanation
Indices: 48753729--48753760 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48753719 AGTTGTAATG
*
48753729 CCCAAAAATCTTGAAA
1 CCCAAAAATCTCGAAA
48753745 CCCAAAAATCTCGAAA
1 CCCAAAAATCTCGAAA
48753761 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.28, G:0.06, T:0.16
Consensus pattern (16 bp):
CCCAAAAATCTCGAAA
Found at i:48757189 original size:29 final size:29
Alignment explanation
Indices: 48757156--48757229 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48757146 CCTTCGAGCT
48757156 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48757185 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48757214 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48757230 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48757190 original size:58 final size:58
Alignment explanation
Indices: 48757097--48757229 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
48757087 ATACTCGATT
* * * * *
48757097 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
48757155 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
48757213 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
48757230 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:48765013 original size:29 final size:29
Alignment explanation
Indices: 48764981--48765112 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
48764971 TACTCGATTT
** * *
48764981 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
48765010 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
48765039 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48765068 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48765097 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48765113 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48770535 original size:41 final size:39
Alignment explanation
Indices: 48770478--48770655 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 39
48770468 CGAATGGTAT
* * *
48770478 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
48770519 CCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACAAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC-TAAA
* *
48770559 CCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
48770597 TCCGGGCTAATTCCCGAAGGCAATTGTGAGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
48770638 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
48770656 ACAATCGAGA
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
38 3 0.03
39 32 0.28
40 51 0.44
41 29 0.25
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48770589 original size:39 final size:40
Alignment explanation
Indices: 48770518--48770618 Score: 141
Period size: 39 Copynumber: 2.5 Consensus size: 40
48770508 AGTGACTAAG
*
48770518 ACCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACAAAA
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACAAAA
* *
48770558 ACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 ACCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACAAAA
* * *
48770597 TCCGGGCTAATTCCCGAAGGCA
1 ACCGGGTTAAGTCCCGAAGGCA
48770619 ATTGTGAGAA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
39 33 0.61
40 21 0.39
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ACCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACAAAA
Found at i:48770640 original size:79 final size:81
Alignment explanation
Indices: 48770478--48770655 Score: 186
Period size: 79 Copynumber: 2.2 Consensus size: 81
48770468 CGAATGGTAT
* * * *
48770478 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAGACCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAGACCGGGCTAAGTCCCGAAGGCAATT
* *
48770543 GTACGAGTTACAAAAA
66 GTACGAATCACAAAAA
* * * *
48770559 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTACTAA-ATCCGGGCTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAGA-CCGGGCTAAGTCCCGAAGGCAAT
* *
48770621 TGTGA-GAATCACTATAA
65 TGT-ACGAATCACAAAAA
48770638 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
48770656 ACAATCGAGA
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.57
80 21 0.26
81 10 0.12
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAGACCGGGCTAAGTCCCGAAGGCAATT
GTACGAATCACAAAAA
Found at i:48772263 original size:66 final size:68
Alignment explanation
Indices: 48772193--48772379 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
48772183 TAGTACCACT
*
48772193 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
48772255 CACG
65 CACG
48772259 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
48772324 ATCACG
63 ATCACG
48772330 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
48772380 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:48772304 original size:71 final size:71
Alignment explanation
Indices: 48772216--48772379 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48772206 CGATTTGTCT
48772216 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48772281 CTTTCA
66 CTTTCA
48772287 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48772352 CTTTCA
66 CTTTCA
48772358 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48772380 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48772417 original size:71 final size:70
Alignment explanation
Indices: 48772216--48772413 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
48772206 CGATTTGTCT
* * *
48772216 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48772281 CTTTCA
65 CTTTCA
* * *
48772287 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
48772352 CTTTCA
65 CTTTCA
* *
48772358 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
48772414 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48775924 original size:40 final size:40
Alignment explanation
Indices: 48775879--48776045 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48775869 CGGAATATAA
48775879 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48775919 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48775959 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48775999 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48776038 CCGGATAT
1 CCGGATAT
48776046 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48783910 original size:40 final size:40
Alignment explanation
Indices: 48783865--48784031 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48783855 CGGAATATAA
48783865 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48783905 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48783945 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48783985 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48784024 CCGGATAT
1 CCGGATAT
48784032 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48792882 original size:40 final size:39
Alignment explanation
Indices: 48792837--48792966 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
48792827 CGGAATATAA
48792837 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
48792877 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
48792917 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
48792957 CCGGATATAA
1 CCGGATATAA
48792967 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:48792981 original size:40 final size:40
Alignment explanation
Indices: 48792853--48793004 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
48792843 ATAACCATGT
* * *
48792853 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
48792893 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48792933 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
48792973 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
48793005 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:48792987 original size:80 final size:80
Alignment explanation
Indices: 48792853--48793002 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48792843 ATAACCATGT
*
48792853 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48792917 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48792933 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48792996 CCCGGAT
64 CCCGGAT
48793003 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48807250 original size:18 final size:18
Alignment explanation
Indices: 48807224--48807258 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
48807214 TTGTGCAAAA
*
48807224 ATATGTAAATATATATAC
1 ATATATAAATATATATAC
48807242 ATATATAAATATATATA
1 ATATATAAATATATATA
48807259 TATACAGGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (18 bp):
ATATATAAATATATATAC
Found at i:48811930 original size:38 final size:38
Alignment explanation
Indices: 48811885--48811992 Score: 139
Period size: 38 Copynumber: 2.8 Consensus size: 38
48811875 GGCTTAAAGA
** *
48811885 CCCGCAGGCTTCATGCTGGTAAAATATTCGGGTTAAAT
1 CCCGCAGGCTTCATGCTGGTATTATATTCGGGATAAAT
*
48811923 CCCGCAGGCTTCGTGCTGGTATTATA-TCAGGGATAAAT
1 CCCGCAGGCTTCATGCTGGTATTATATTC-GGGATAAAT
*
48811961 CCCGCAGGCCT-AGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCA-TGCTGGTATTATATTCGGG
48811993 CCTTCGTACC
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
37 2 0.03
38 57 0.93
39 2 0.03
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCATGCTGGTATTATATTCGGGATAAAT
Found at i:48812195 original size:43 final size:43
Alignment explanation
Indices: 48811985--48812182 Score: 315
Period size: 43 Copynumber: 4.6 Consensus size: 43
48811975 GCTGGTATTA
* * *
48811985 TATTCGGGCCTTCGTACCTAGCAGGCTTTGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
48812028 TATTCAGGCCTTTGTGCCTAGCAGGCTTCGTACCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
48812071 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
48812114 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
48812157 TATTCGGGCCTTCGTGCTTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
48812183 GTAATGCCGG
Statistics
Matches: 143, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 143 1.00
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:48816767 original size:27 final size:27
Alignment explanation
Indices: 48816737--48816789 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
48816727 CCAAAGTGAC
* *
48816737 AAATGATTGTTACGCCCCTATGAGATA
1 AAATGACTATTACGCCCCTATGAGATA
* *
48816764 AAATGACTATTATGCCCTTATGAGAT
1 AAATGACTATTACGCCCCTATGAGAT
48816790 GTATGACTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (27 bp):
AAATGACTATTACGCCCCTATGAGATA
Found at i:48817107 original size:34 final size:34
Alignment explanation
Indices: 48817063--48817142 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
48817053 TGCATATATG
*
48817063 CACTGTTACTG-TCACTAAAATGGGCTAAGGCCCA
1 CACTGATACTGAT-ACTAAAATGGGCTAAGGCCCA
* *
48817097 CACTGATACTGATACTATAATGGGCTTAGGCCCTA
1 CACTGATACTGATACTAAAATGGGCTAAGGCCC-A
*
48817132 -ACTGAAACTGA
1 CACTGATACTGA
48817143 ACTCTTACTG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
34 38 0.95
35 2 0.05
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (34 bp):
CACTGATACTGATACTAAAATGGGCTAAGGCCCA
Found at i:48829886 original size:95 final size:95
Alignment explanation
Indices: 48829745--48829916 Score: 236
Period size: 95 Copynumber: 1.8 Consensus size: 95
48829735 AGAGGCAGTG
* * **
48829745 TAAGACCATGTCTGGGACATGGCATCGACCTCAAGACCTAAAAGTTAGTGTAAGACCATGTCTGG
1 TAAGACCATGTCTGGGACATGGCATAGACCTCAAGACATAAAAGTTAGTGTAAGACCATGTCTAA
48829810 GACATGGCATCGGTTTGATATGTGTTAGTT
66 GACATGGCATCGGTTTGATATGTGTTAGTT
** * * * * * *
48829840 TAAGACCATGTCTGGGACATGGCATAGGTCTCGATATATGAGAGTTAGTGTAAGACCATGTTTAA
1 TAAGACCATGTCTGGGACATGGCATAGACCTCAAGACATAAAAGTTAGTGTAAGACCATGTCTAA
48829905 GACATGGCATCG
66 GACATGGCATCG
48829917 ACTTTGATGT
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
95 65 1.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (95 bp):
TAAGACCATGTCTGGGACATGGCATAGACCTCAAGACATAAAAGTTAGTGTAAGACCATGTCTAA
GACATGGCATCGGTTTGATATGTGTTAGTT
Found at i:48829909 original size:50 final size:45
Alignment explanation
Indices: 48829694--48829950 Score: 151
Period size: 50 Copynumber: 5.4 Consensus size: 45
48829684 ATATGTGTGC
* * *
48829694 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-TCACATTATGAGAGG
1 TAGTGTAAGACCATGTCTGGGACATGGCATAGGTTC-GA-TAT--GAGT
* * ** **
48829740 CAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCAAGACCTAAAAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATAG-GTTC--GA--TATGAGT
* * *
48829790 TAGTGTAAGACCATGTCTGGGACATGGCATCGGTTTGATATGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATAGGTTCGATATGAGT
*
48829835 TAGTTTAAGACCATGTCTGGGACATGGCATAGGTCTCGATATATGAGAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATAGGT-TCG--ATAT--GAGT
* ** * * * *
48829885 TAGTGTAAGACCATGTTTAAGACATGGCATCGACTTTGATGTATGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATAG-GTTCGA--TATGAGT
*
48829933 TAGTGCAAGACCATGTCT
1 TAGTGTAAGACCATGTCT
48829951 ATTGATATGG
Statistics
Matches: 169, Mismatches: 28, Indels: 26
0.76 0.13 0.12
Matches are distributed among these distances:
45 36 0.21
46 11 0.07
47 16 0.09
48 30 0.18
49 1 0.01
50 70 0.41
51 3 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (45 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATAGGTTCGATATGAGT
Found at i:48840001 original size:29 final size:29
Alignment explanation
Indices: 48839968--48840156 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
48839958 GTGACGAGAT
48839968 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48839997 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48840026 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48840055 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
48840084 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
48840113 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
48840142 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
48840157 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:48842545 original size:49 final size:49
Alignment explanation
Indices: 48842473--48842746 Score: 395
Period size: 49 Copynumber: 5.5 Consensus size: 49
48842463 TGAGCTCACG
48842473 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
48842522 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
* * * * * *
48842571 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA-TT-GGTCGCA
* * * *
48842622 TGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCGCA
* * *
48842672 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
*
48842721 TGTGTAGTAATAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
48842747 TACGTACCAG
Statistics
Matches: 200, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 115 0.57
50 47 0.23
51 38 0.19
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCA
Found at i:48842743 original size:150 final size:149
Alignment explanation
Indices: 48842468--48842765 Score: 479
Period size: 150 Copynumber: 2.0 Consensus size: 149
48842458 TATTGTGAGC
* *
48842468 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
* * *
48842533 AAGTGCAGGCTACTACGTGTACCAGATGATTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAT
66 AAGTGCAGGCTACTACGTGTACCAGATAATTGGCCGCATGTGTAGTAATAAGTGCAGGCTACTAT
* *
48842598 GCGTACCTGATAACTTCGA
131 ACGTACCAGATAACTTCGA
* * *
48842617 TCACATGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTAC
*
48842682 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCGCATGTGTAGTAATAAGTGCAGGCTACTA
65 TAAGTGCAGGCTACTACGTGTACCAGATAATTGGCCGCATGTGTAGTAATAAGTGCAGGCTACTA
*
48842747 TACGTACCAGATAGCTTCG
130 TACGTACCAGATAACTTCG
48842766 GCTACAAGTG
Statistics
Matches: 136, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
149 43 0.32
150 93 0.68
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (149 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATAATTGGCCGCATGTGTAGTAATAAGTGCAGGCTACTAT
ACGTACCAGATAACTTCGA
Found at i:48845517 original size:16 final size:15
Alignment explanation
Indices: 48845479--48845517 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
48845469 TGGATTCTCG
*
48845479 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
48845494 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
48845509 TATTCTTGG
1 TA-TCTTGG
48845518 CTTCTGTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:48847599 original size:29 final size:29
Alignment explanation
Indices: 48847563--48847618 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
48847553 CCGAGCCTAG
48847563 GGGCAAAA-GTGTAATTATGCAAAAGTTTA
1 GGGCAAAATG-GTAATTATGCAAAAGTTTA
* *
48847592 GGGCAAAATGGTAATTTTGCCAAAGTT
1 GGGCAAAATGGTAATTATGCAAAAGTT
48847619 CGTATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.29
Consensus pattern (29 bp):
GGGCAAAATGGTAATTATGCAAAAGTTTA
Found at i:48848338 original size:49 final size:49
Alignment explanation
Indices: 48848266--48848447 Score: 265
Period size: 49 Copynumber: 3.7 Consensus size: 49
48848256 GCTATTGTGA
*
48848266 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
48848315 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * *
48848365 CGATCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAGAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
48848415 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
48848448 TACGTACCAG
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 72 0.62
50 4 0.03
51 40 0.34
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:48848441 original size:100 final size:100
Alignment explanation
Indices: 48848268--48848466 Score: 344
Period size: 100 Copynumber: 2.0 Consensus size: 100
48848258 TATTGTGAGG
* *
48848268 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAGAATTGGTCACATGTGTAGTACT
* *
48848333 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATACGTACCAGATAACTTCGA
*
48848368 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAGAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAGAATTGGTCACATGTGTAGTACT
*
48848433 AAGTGCAGGCTACTATACGTACCAGATAGCTTCG
66 AAGTGCAGGCTACTATACGTACCAGATAACTTCG
48848467 GCTACAAGTG
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAGAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATACGTACCAGATAACTTCGA
Found at i:48851054 original size:53 final size:53
Alignment explanation
Indices: 48850996--48851101 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
48850986 GCCCAAAACC
48850996 CCTTACAAAGCCCAAACAATTTCACATACCTGTATCTGGCCCATTAAGCCCAA
1 CCTTACAAAGCCCAAACAATTTCACATACCTGTATCTGGCCCATTAAGCCCAA
48851049 CCTTACAAAGCCCAAACAATTTCACATACCTGTATCTGGCCCATTAAGCCCAA
1 CCTTACAAAGCCCAAACAATTTCACATACCTGTATCTGGCCCATTAAGCCCAA
48851102 TCATATTCAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.34, C:0.34, G:0.09, T:0.23
Consensus pattern (53 bp):
CCTTACAAAGCCCAAACAATTTCACATACCTGTATCTGGCCCATTAAGCCCAA
Found at i:48851091 original size:29 final size:29
Alignment explanation
Indices: 48851005--48851091 Score: 69
Period size: 29 Copynumber: 3.2 Consensus size: 29
48850995 CCCTTACAAA
48851005 GCCCAAACAATTTCACATACCTGTATCTG
1 GCCCAAACAATTTCACATACCTGTATCTG
** * * **
48851034 GCCC-ATTAA--GCCCA-ACCT-TA-CAAA
1 GCCCAAACAATTTCACATACCTGTATC-TG
48851058 GCCCAAACAATTTCACATACCTGTATCTG
1 GCCCAAACAATTTCACATACCTGTATCTG
48851087 GCCCA
1 GCCCA
48851092 TTAAGCCCAA
Statistics
Matches: 39, Mismatches: 12, Indels: 14
0.60 0.18 0.22
Matches are distributed among these distances:
23 1 0.03
24 6 0.15
25 7 0.18
26 3 0.08
27 3 0.08
28 7 0.18
29 11 0.28
30 1 0.03
ACGTcount: A:0.32, C:0.34, G:0.10, T:0.23
Consensus pattern (29 bp):
GCCCAAACAATTTCACATACCTGTATCTG
Found at i:48851142 original size:29 final size:29
Alignment explanation
Indices: 48851076--48851184 Score: 116
Period size: 29 Copynumber: 3.8 Consensus size: 29
48851066 AATTTCACAT
* * *
48851076 ACCTGTATCTGGCCCATTAAGCCC-AATC
1 ACCTATATATGGCCCATTAGGCCCAAATC
48851104 A--TATTCATATGGCCCATTAGGCCCAAATC
1 ACCTA-T-ATATGGCCCATTAGGCCCAAATC
*
48851133 ACCTATATATGGCCCATTGGGCCCAAATC
1 ACCTATATATGGCCCATTAGGCCCAAATC
* * *
48851162 ACATTTATATGGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAGGCC
48851185 TAGTCACATT
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
26 1 0.01
27 1 0.01
28 17 0.25
29 46 0.68
30 1 0.01
31 2 0.03
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
ACCTATATATGGCCCATTAGGCCCAAATC
Found at i:48851182 original size:58 final size:57
Alignment explanation
Indices: 48851076--48851184 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 57
48851066 AATTTCACAT
* * *
48851076 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
** * *
48851133 ACCTATATATGGCCCATTGGGCCCAAATCACATTTATATGGCCCGTTAGGCC
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCC
48851185 TAGTCACATT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.45
58 24 0.55
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:48853365 original size:32 final size:32
Alignment explanation
Indices: 48853324--48853389 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
48853314 AGGCTATCTC
48853324 TAAGTCCATCCTCAAACCTAACGCAACGCTCA
1 TAAGTCCATCCTCAAACCTAACGCAACGCTCA
48853356 TAAGTCCATCCTCAAACCTAACGCAACGCTCA
1 TAAGTCCATCCTCAAACCTAACGCAACGCTCA
48853388 TA
1 TA
48853390 CTTCGTTGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.36, G:0.09, T:0.20
Consensus pattern (32 bp):
TAAGTCCATCCTCAAACCTAACGCAACGCTCA
Found at i:48855665 original size:29 final size:29
Alignment explanation
Indices: 48855569--48855683 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
48855559 TACCTGTATC
* * * *
48855569 TGGCCCATTAAGCCC-AATTATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
*
48855597 TGGCCCATTAGACCCAAATCAC-TTATATA
1 TGGCCCATTAGGCCCAAATCACATT-TATA
48855626 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
** * *
48855655 TGGCCTGTTAGGACC-AGTCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
48855683 T
1 T
48855684 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 28 0.38
29 44 0.59
30 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:48860268 original size:41 final size:42
Alignment explanation
Indices: 48860162--48860278 Score: 132
Period size: 41 Copynumber: 2.8 Consensus size: 42
48860152 TACCGTACCA
* *
48860162 ATGCCATATCCCA-AATATGGTCTTACATGTAATATCGTATCG
1 ATGCCATATCCCATAA-ATGGTCTTACACGTAATATCATATCG
* **
48860204 ATGCCAATAGCCCATCTATGGTCTTACACG-AAGT-TCATATCG
1 ATGCC-ATATCCCATAAATGGTCTTACACGTAA-TATCATATCG
*
48860246 ATGCCATATCCCATAAATGGTCTTACATGTAAT
1 ATGCCATATCCCATAAATGGTCTTACACGTAAT
48860279 CTTAGTAACC
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
41 21 0.34
42 21 0.34
43 20 0.32
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCATAAATGGTCTTACACGTAATATCATATCG
Found at i:48867369 original size:41 final size:40
Alignment explanation
Indices: 48867191--48867370 Score: 159
Period size: 40 Copynumber: 4.5 Consensus size: 40
48867181 GCTCGATTGT
* * * **
48867191 CTTCGGGACATAGCCCGG-TTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAAAGC
* * *
48867231 CCTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATA-C
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC-AAAAGC
* * * * *
48867271 CTTCAGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAAGC
* * *
48867311 CTTCGGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAAAGC
48867352 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
48867371 CACCATTCGA
Statistics
Matches: 111, Mismatches: 23, Indels: 11
0.77 0.16 0.08
Matches are distributed among these distances:
39 2 0.02
40 77 0.69
41 31 0.28
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAAAGC
Found at i:48874378 original size:71 final size:71
Alignment explanation
Indices: 48874292--48874455 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48874282 CGATTTGTCT
48874292 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48874357 CTTTCA
66 CTTTCA
48874363 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48874428 CTTTCA
66 CTTTCA
48874434 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48874456 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48874493 original size:71 final size:70
Alignment explanation
Indices: 48874292--48874489 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
48874282 CGATTTGTCT
* * * *
48874292 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48874357 CTTTCA
65 CTTTCA
* * * *
48874363 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48874428 CTTTCA
65 CTTTCA
* *
48874434 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
48874490 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48877722 original size:39 final size:40
Alignment explanation
Indices: 48877599--48877764 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
48877589 AAATTGAATG
* * *
48877599 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
48877638 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
48877678 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
48877717 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
48877757 ATATCCGG
1 ATATCCGG
48877765 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:48877731 original size:79 final size:79
Alignment explanation
Indices: 48877599--48877748 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
48877589 AAATTGAATG
*
48877599 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
48877664 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
48877678 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
48877741 ATTTGTGC
64 AATTGTGC
48877749 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:48885658 original size:40 final size:42
Alignment explanation
Indices: 48885614--48885720 Score: 139
Period size: 40 Copynumber: 2.6 Consensus size: 42
48885604 TGCTGGAAAT
* *
48885614 TATATCCGGGTTAAGACCCGAAGGCAATT-GCGCTAGT-GGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTCGCGCGAGTAGGC
* * **
48885654 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTATTC
1 TATATCCGGGCTAAGACCCGAAGGCAATTCGCGCGAGTAGGC
48885695 TATATCCGGGCTAAGACCCGAAGGCA
1 TATATCCGGGCTAAGACCCGAAGGCA
48885721 TTTGTGCACG
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.05
40 29 0.51
41 25 0.44
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.21
Consensus pattern (42 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTCGCGCGAGTAGGC
Found at i:48885703 original size:41 final size:39
Alignment explanation
Indices: 48885614--48885727 Score: 138
Period size: 41 Copynumber: 2.8 Consensus size: 39
48885604 TGCTGGAAAT
* * *
48885614 TATATCCGGGTTAAGACCCGAAGGCAATTGCGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
* **
48885654 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTATTC
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGT-GGC
48885695 TATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
48885728 ACGTGATTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.05
40 29 0.45
41 30 0.47
42 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:48893105 original size:71 final size:71
Alignment explanation
Indices: 48893019--48893182 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48893009 CGATTTGTCT
48893019 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48893084 CTTTCA
66 CTTTCA
48893090 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48893155 CTTTCA
66 CTTTCA
48893161 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48893183 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48893220 original size:71 final size:70
Alignment explanation
Indices: 48893019--48893216 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
48893009 CGATTTGTCT
* * * *
48893019 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48893084 CTTTCA
65 CTTTCA
* * * *
48893090 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48893155 CTTTCA
65 CTTTCA
* *
48893161 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
48893217 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48896911 original size:41 final size:40
Alignment explanation
Indices: 48896737--48896912 Score: 158
Period size: 40 Copynumber: 4.4 Consensus size: 40
48896727 GATTGTCTTT
* * * * * *
48896737 GGGACATAGCCCGG-TTATAGTGATTTGCACAATTGCCCTC
1 GGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC
* *
48896777 GGGAATTAGCCCGGATTTAGTAACTCGCACGAATGCCTTC
1 GGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* * * *
48896817 GGGACTTAACCTGGTTTTGGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
* * * * *
48896857 GGGAGTT-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTT
1 GGGACTTAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTC
48896898 GGGACTTAGCCCGGA
1 GGGACTTAGCCCGGA
48896913 CACCATTCGA
Statistics
Matches: 108, Mismatches: 24, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
40 80 0.74
41 27 0.25
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
GGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTC
Found at i:48912254 original size:28 final size:28
Alignment explanation
Indices: 48912211--48912313 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
48912201 GGAGGAAGAG
48912211 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
*
48912239 TTTTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* *
48912267 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTAT
* * *
48912295 ATCTGGTGACTCTGTCACA
1 TTCTGGTGGCTCTGCCACA
48912314 GTATCTGTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 1 0.02
28 64 0.97
29 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTAT
Found at i:48917040 original size:40 final size:40
Alignment explanation
Indices: 48916948--48917126 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
48916938 CGAATGGTAT
* * *
48916948 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
48916989 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
48917029 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
48917069 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
48917109 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
48917127 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 92 0.77
41 26 0.22
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:48917151 original size:80 final size:80
Alignment explanation
Indices: 48916982--48917152 Score: 182
Period size: 80 Copynumber: 2.1 Consensus size: 80
48916972 GTGCTAAGTG
* * * * * *
48916982 ACTAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * * *
48917047 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
48917062 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAA
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAA
*
48917126 GACAATCGAGCTAGTC
65 GACAATCGAGCGAGTC
* *
48917142 GCTATATCCGG
1 ACTAAATCCGG
48917153 TTAAATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
79 2 0.03
80 72 0.97
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:48918526 original size:179 final size:180
Alignment explanation
Indices: 48918164--48918535 Score: 629
Period size: 179 Copynumber: 2.1 Consensus size: 180
48918154 GATTCCTCCT
* * * *
48918164 TGAGTCTAGTTGCTATATAAATAAACGACATCAGTATTGAAGCCCTGTACATGGAGATATTCAAG
1 TGAGTCTAGTTTCTATAGAAAGAAACGACATCAGTATTGAAGCCCTGTACAGGGAGATATTCAAG
48918229 TTGTAACGCGCGAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGAATTTAACTAATAAACTGT
66 TTGTAACGCGCGAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGAATTTAACTAATAAACTGT
* *
48918294 ACTAATTGGCTAGACTAAAAATTCTAGAAAAAAATCTGTAGATGGAAATA
131 ACTAATTGGCTAGACCAAAAATTCTAGAAAAAAATCTATAGATGGAAATA
*
48918344 TGAGTCTAGTTTCTATAGAAAGAAACGCCATCAGTATTGAAGCCCTGTACAGGGAGATATTCAAG
1 TGAGTCTAGTTTCTATAGAAAGAAACGACATCAGTATTGAAGCCCTGTACAGGGAGATATTCAAG
* *
48918409 TTGTAACGCGCGAAGGTCAGTGTAGTTGA-CCCTGTAACATGGGAGATTTTAACTAATAAACTGT
66 TTGTAACGCGCGAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGAATTTAACTAATAAACTGT
* * *
48918473 ACTAATTGGCTTGACCACAAATTCTAGAAAAAAATCTATAGATGGACATA
131 ACTAATTGGCTAGACCAAAAATTCTAGAAAAAAATCTATAGATGGAAATA
48918523 TGAGTCTAGTTTC
1 TGAGTCTAGTTTC
48918536 AGGGAAAAAT
Statistics
Matches: 180, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
179 92 0.51
180 88 0.49
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (180 bp):
TGAGTCTAGTTTCTATAGAAAGAAACGACATCAGTATTGAAGCCCTGTACAGGGAGATATTCAAG
TTGTAACGCGCGAAGGTCAGTGTAGTCGACCCCTGTAACATGGGAGAATTTAACTAATAAACTGT
ACTAATTGGCTAGACCAAAAATTCTAGAAAAAAATCTATAGATGGAAATA
Found at i:48925154 original size:40 final size:40
Alignment explanation
Indices: 48925068--48925240 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
48925058 GTATCCAGGC
** * *
48925068 TAAGTCCCGAAGGTTTTTGTGCTAAGTGACTAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAACCGGGT
*
48925109 TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGT
* * *
48925149 TAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGT
* * * * *
48925189 TAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGT
*
48925228 CAATGTCCCGAAG
1 TAA-GTCCCGAAG
48925241 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.81
41 20 0.18
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAACCGGGT
Found at i:48925265 original size:80 final size:80
Alignment explanation
Indices: 48925096--48925266 Score: 182
Period size: 80 Copynumber: 2.1 Consensus size: 80
48925086 GTGCTAAGTG
* * * * * *
48925096 ACTAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
* * * *
48925161 GCATTCGTGCGAGTT
66 ACAATCGAGCGAGTC
* * *
48925176 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAA
1 ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAA-GTCCCGAA
*
48925240 GACAATCGAGCTAGTC
65 GACAATCGAGCGAGTC
* *
48925256 GCTATATCCGG
1 ACTAAATCCGG
48925267 TTAAATTCCG
Statistics
Matches: 74, Mismatches: 16, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
79 2 0.03
80 72 0.97
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
ACTAAATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGTCAAGTCCCGAAG
ACAATCGAGCGAGTC
Found at i:48927633 original size:28 final size:28
Alignment explanation
Indices: 48927596--48927711 Score: 155
Period size: 28 Copynumber: 4.2 Consensus size: 28
48927586 GGAGGAAGTG
48927596 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
48927624 TTCTGGTGGCTCTGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
48927652 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * * *
48927680 ATCTGGTGACTCTGTCAC-AGTATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
48927706 TTCTGG
1 TTCTGG
48927712 CAACCATGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 66 0.85
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:48931787 original size:28 final size:28
Alignment explanation
Indices: 48931747--48931849 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
48931737 GGAGGAAGCA
* *
48931747 TTCTGGAGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
*
48931775 TTCTGGTGGCTCTGCTACAAATATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* *
48931803 TTCTGGTGGCCCTGCCACAATTATCTAT
1 TTCTGGTGGCTCTGCCACAAATATCTAT
* * *
48931831 ATCTGGTGACTCTGTCACA
1 TTCTGGTGGCTCTGCCACA
48931850 GTATCTGTTC
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTAT
Found at i:48934655 original size:40 final size:40
Alignment explanation
Indices: 48934436--48934648 Score: 254
Period size: 40 Copynumber: 5.4 Consensus size: 40
48934426 ACTCAAGTAT
* ** * *
48934436 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
48934474 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
48934514 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
48934554 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
48934594 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
48934634 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
48934649 TAGATATCAT
Statistics
Matches: 148, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 115 0.78
41 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:48943448 original size:29 final size:29
Alignment explanation
Indices: 48943406--48943478 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
48943396 GTGACAAGAT
48943406 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
48943435 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
48943464 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
48943479 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:48943497 original size:29 final size:29
Alignment explanation
Indices: 48943465--48943537 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
48943455 TGAAAAGTAT
* * *
48943465 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
48943494 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
48943523 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
48943538 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:48951391 original size:29 final size:29
Alignment explanation
Indices: 48951349--48951450 Score: 204
Period size: 29 Copynumber: 3.5 Consensus size: 29
48951339 GTGACAAGAT
48951349 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
48951378 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
48951407 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
48951436 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
48951451 GAATTTAAAT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 73 1.00
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:48951469 original size:29 final size:29
Alignment explanation
Indices: 48951437--48951509 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
48951427 TGAAAAGTAT
* * *
48951437 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
48951466 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
48951495 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
48951510 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:48951470 original size:58 final size:58
Alignment explanation
Indices: 48951350--48951509 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 58
48951340 TGACAAGATT
*
48951350 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGC-AAGCTTGAAAAGTAT
1 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAA-CTTGAAAAGTAC
*
48951408 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAA-TTTAAATTA-TAC
1 GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAACTTGAAA--AGTAC
* * *
48951466 GGCACTATGTGTGCGAGCTT-AAATCA-CATGGCACTAAGTGTGCG
1 GGCACTAAGTGTGCAAGCTTGAAA--AGTATGGCACTAAGTGTGCG
48951510 TGATCGATTA
Statistics
Matches: 92, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
57 8 0.09
58 80 0.87
59 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (58 bp):
GGCACTAAGTGTGCAAGCTTGAAAAGTATGGCACTAAGTGTGCGAACTTGAAAAGTAC
Found at i:48961338 original size:40 final size:40
Alignment explanation
Indices: 48961211--48961340 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
48961201 ATGCTGGAAA
* * *
48961211 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
48961251 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
48961291 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
48961331 TTATATCCGG
1 TTATATCCGG
48961341 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:48969288 original size:40 final size:40
Alignment explanation
Indices: 48969125--48969290 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
48969115 AAATTGAATG
* * **
48969125 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
48969164 ATATCC-GGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
48969203 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
48969243 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
48969283 ATATCCGG
1 ATATCCGG
48969291 TTATATTCCG
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
38 6 0.06
39 32 0.31
40 62 0.61
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:48974104 original size:27 final size:28
Alignment explanation
Indices: 48974074--48974143 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
48974064 ATAATAAGTC
*
48974074 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
48974101 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
48974129 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48974144 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:48977406 original size:20 final size:20
Alignment explanation
Indices: 48977373--48977425 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
48977363 GGAAGAATAA
48977373 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
48977392 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
48977413 A-AAA-GAAAAAAAA
1 AGAAATGAAAAAAAA
48977426 AGTGTTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:48978617 original size:29 final size:29
Alignment explanation
Indices: 48978584--48978666 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
48978574 GTGACGAGAT
48978584 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
48978613 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
48978642 TGGCACTAAGTATGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
48978667 AAATACGGCA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:48978702 original size:58 final size:58
Alignment explanation
Indices: 48978580--48978707 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 58
48978570 TACGGTGACG
* * * *
48978580 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTATGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
48978637 ATATATGGCACTAAGTATGCATGCTGGAAAAAATACGGCACTGGGTGTGCA-GCTCGAA
1 AGATATGGCACTAAGTATGCATGCTGG-AAAAATACGGCACTAAGTGTGCATGCTCGAA
* *
48978695 GGGTATGGCACTA
1 AGATATGGCACTA
48978708 TGTGTGCGGG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 3 0.05
58 37 0.63
59 19 0.32
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (58 bp):
AGATATGGCACTAAGTATGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:48986709 original size:42 final size:42
Alignment explanation
Indices: 48986662--48986749 Score: 176
Period size: 42 Copynumber: 2.1 Consensus size: 42
48986652 ATTTTCCATG
48986662 CTATGGCCTTCTTATGTTCTTTTAATACTTGGATTAATTCCA
1 CTATGGCCTTCTTATGTTCTTTTAATACTTGGATTAATTCCA
48986704 CTATGGCCTTCTTATGTTCTTTTAATACTTGGATTAATTCCA
1 CTATGGCCTTCTTATGTTCTTTTAATACTTGGATTAATTCCA
48986746 CTAT
1 CTAT
48986750 CTCCTTGGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (42 bp):
CTATGGCCTTCTTATGTTCTTTTAATACTTGGATTAATTCCA
Found at i:48989303 original size:14 final size:14
Alignment explanation
Indices: 48989284--48989310 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48989274 AAGAGAGAGA
48989284 AAAATTAAATTAAT
1 AAAATTAAATTAAT
48989298 AAAATTAAATTAA
1 AAAATTAAATTAA
48989311 ATTGCAAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAATTAAATTAAT
Found at i:48992361 original size:40 final size:39
Alignment explanation
Indices: 48992278--48992469 Score: 138
Period size: 40 Copynumber: 4.8 Consensus size: 39
48992268 TCGAATGATG
* * * * *
48992278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
48992318 TCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * * *
48992358 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
48992397 -CCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCC-GGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
48992438 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
48992470 CGTTATATCC
Statistics
Matches: 124, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 80 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:48992418 original size:79 final size:82
Alignment explanation
Indices: 48992278--48992462 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 82
48992268 TCGAATGATG
* *
48992278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
*
48992342 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
48992358 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTA-AACCTGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACC-GGACTAAGAT-CCGAAGGCA
*
48992419 TTCGTGCGAGTCACTATAA
64 TTCGTGCGAGTCAATATAA
**
48992438 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
48992463 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
78 4 0.04
79 53 0.58
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:48992470 original size:40 final size:40
Alignment explanation
Indices: 48992331--48992470 Score: 144
Period size: 40 Copynumber: 3.5 Consensus size: 40
48992321 GGACTAGGAT
* * * *
48992331 CCGAAGGCATTCGTGCGAGTTAATAAATCC-GGGCTAAG-C
1 CCGAAGGCATTTGTGCGAGTCACTAAA-CCTGGGTTAAGTC
* *
48992370 CCGAAGGCATTTGTGCAAGTTACTAAACCTGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTCACTAAACCTGGGTTAAGTC
* *
48992410 CCGAAGGCATTCGTGCGAGTCACTATAACC-GGGCTT-CGTC
1 CCGAAGGCATTTGTGCGAGTCACTA-AACCTGGG-TTAAGTC
*
48992450 CCGAAGGCATTTGAGCGAGTC
1 CCGAAGGCATTTGTGCGAGTC
48992471 GTTATATCCG
Statistics
Matches: 87, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.36
40 48 0.55
41 6 0.07
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTCACTAAACCTGGGTTAAGTC
Found at i:48992493 original size:79 final size:78
Alignment explanation
Indices: 48992278--48992495 Score: 174
Period size: 79 Copynumber: 2.7 Consensus size: 78
48992268 TCGAATGATG
* * * ** *
48992278 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTA-AACCGGGTTA-AATTCCGAAGGCAT
*
48992341 TCGTGCGAGTTAATAAA
62 TCGTGCGAGTCAATAAA
* * * *
48992358 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCTGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACC-GGGTTAAATTCCGAAGGCATTCG
*
48992423 TGCGAGTCACTATAA
65 TGCGAGTCAATA-AA
** * ** *
48992438 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTA-AACCGGGTTAAATTCCGAAGG
48992496 TACGTGATTC
Statistics
Matches: 113, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
78 3 0.03
79 66 0.58
80 41 0.36
81 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCGGGTTAAATTCCGAAGGCATTCGT
GCGAGTCAATAAA
Found at i:48997004 original size:37 final size:37
Alignment explanation
Indices: 48996951--48997088 Score: 258
Period size: 37 Copynumber: 3.7 Consensus size: 37
48996941 CGAATAGTCC
* *
48996951 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
48996988 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
48997025 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
48997062 CCACACGTAGTCATCGGGTCTTACCCG
1 CCACACGTAGTCATCGGGTCTTACCCG
48997089 AAATATATTT
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:48997289 original size:48 final size:48
Alignment explanation
Indices: 48997251--48997751 Score: 831
Period size: 48 Copynumber: 10.4 Consensus size: 48
48997241 TAGTTCATTC
* * *
48997251 TAGCCATTCGGCGTTACCACACATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
48997299 TAGCCATTCAGCTTTACCACAGATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
48997347 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* **
48997395 TAGCCATTCGGCTTTACCACACATACATATCTCATATGTATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* ** *
48997443 TAGCCATTCGGCTTTACCACACATACATATCTCATATGTATTTTACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
48997491 TAGCCATTCGGCTTTATCACTTATACATATCACATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
48997539 TAGCCATTTGGCTTTACCACATATACATATCACATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
48997587 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
48997635 TAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
48997683 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
48997731 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
48997752 CACATATATA
Statistics
Matches: 427, Mismatches: 26, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 427 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:49001649 original size:40 final size:40
Alignment explanation
Indices: 49001605--49001875 Score: 398
Period size: 40 Copynumber: 6.8 Consensus size: 40
49001595 GAATACACAT
* * * *
49001605 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
* * * *
49001645 CACCAGCATGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
* * * * *
49001685 CTCTAACACGAATGCTCTCCGAGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
49001725 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
*
49001765 CACCAGCATGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
*
49001805 CACCAGCACGAATGCTCTTCGAGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
*
49001845 CACCAGCACGAATGCTCCTCGGGACTTAGCC
1 CACCAGCACGAATGCTCTTCGGGACTTAGCC
49001876 TGGCTATATA
Statistics
Matches: 208, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 208 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
Found at i:49003227 original size:37 final size:37
Alignment explanation
Indices: 49003169--49003271 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
49003159 CGAATAGTCC
* * *
49003169 CCACATGTAGTTATCGAGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
49003206 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
49003243 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
49003272 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:49003477 original size:48 final size:48
Alignment explanation
Indices: 49003419--49003740 Score: 563
Period size: 48 Copynumber: 6.7 Consensus size: 48
49003409 CACATCTCCG
* * *
49003419 ACATAGTTCACACTAGCCATTCGGCTTTACAACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
49003467 ATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
49003515 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
**
49003563 ATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
** *
49003611 ATGTATTTCACATTAGCCATTCGGCTTTACCACGTATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
49003659 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
49003707 ACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ACATATTTCACATTAGCCATTCGGCTTTACCACA
49003741 CACATATATA
Statistics
Matches: 263, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 263 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:49011353 original size:56 final size:56
Alignment explanation
Indices: 49011290--49011400 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
49011280 ACCATGGCAT
*
49011290 TGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTC
1 TGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
49011346 TGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
1 TGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
49011401 ACATGTAAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
TGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:49019723 original size:40 final size:40
Alignment explanation
Indices: 49019627--49019843 Score: 215
Period size: 40 Copynumber: 5.5 Consensus size: 40
49019617 CGAATGGTGT
* * * * *
49019627 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAAA
* *
49019668 CCGGGTCAATTCCCGAAGGCATTTGTGCGAATTACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
* * *
49019708 CCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
* * * *
49019748 CCGGGTTAAGT-CC-AAGGCATTCGTGTGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
* * * * *
49019786 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
*
49019826 CCGGG-CAATGTCCCGAAG
1 CCGGGTTAA-GTCCCGAAG
49019844 ACAAACGAGC
Statistics
Matches: 145, Mismatches: 28, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
38 30 0.21
39 6 0.04
40 83 0.57
41 26 0.18
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAAA
Found at i:49019790 original size:78 final size:80
Alignment explanation
Indices: 49019626--49019843 Score: 226
Period size: 78 Copynumber: 2.7 Consensus size: 80
49019616 TCGAATGGTG
* * * * *
49019626 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATT
*
49019691 TGTGCGAATTACTAAA
65 CGTGCGAATTACTAAA
* * * * *
49019707 ACCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT-CC-AAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
* *
49019770 GTGTGAGTTACTAAA
66 GTGCGAATTACTAAA
* * * * * *
49019785 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAG
49019844 ACAAACGAGC
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
77 2 0.02
78 60 0.54
79 4 0.04
80 20 0.18
81 25 0.23
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
GTGCGAATTACTAAA
Found at i:49024003 original size:40 final size:40
Alignment explanation
Indices: 49023959--49024136 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
49023949 GCTCGATTGT
* * * *
49023959 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
49023999 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
49024039 CTTCGAGACTTA-ACCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
49024078 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
49024119 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
49024137 ATACCATTCG
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 36 0.31
40 52 0.45
41 27 0.23
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Found at i:49024850 original size:2 final size:2
Alignment explanation
Indices: 49024843--49024874 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
49024833 ATGTGCAAAC
49024843 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49024875 GCTAGAGCCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49033113 original size:40 final size:40
Alignment explanation
Indices: 49033069--49033247 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
49033059 GCTCGATTGT
* * * *
49033069 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * *
49033109 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* *
49033149 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
* * * *
49033189 CTTCGGGACTTAACCCGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGTTTTAGTAAC-TCGCACAAATGC
49033230 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
49033248 ATACCATTCG
Statistics
Matches: 120, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.02
40 91 0.76
41 27 0.22
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTTTAGTAACTCGCACAAATGC
Done.