Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 159 of 318
Found at i:49037049 original size:28 final size:28
Alignment explanation
Indices: 49036984--49037084 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
49036974 ATAGTGAATC
*
49036984 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
49037013 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49037041 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
49037071 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49037085 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49041301 original size:40 final size:40
Alignment explanation
Indices: 49041256--49041422 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
49041246 CGGAATATAA
49041256 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
49041296 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49041336 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49041376 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49041415 CCGGATAT
1 CCGGATAT
49041423 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49041406 original size:80 final size:79
Alignment explanation
Indices: 49041272--49041422 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
49041262 ATAATCACGT
*
49041272 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
49041337 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
49041352 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
49041415 CCGGATAT
64 CCGGATAT
49041423 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:49049302 original size:40 final size:40
Alignment explanation
Indices: 49049257--49049423 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49049247 CGGAATATAA
49049257 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49049297 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49049337 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49049377 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49049416 CCGGATAT
1 CCGGATAT
49049424 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49056206 original size:28 final size:28
Alignment explanation
Indices: 49056141--49056241 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
49056131 ATAGTGAATC
*
49056141 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
49056170 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49056198 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
49056228 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49056242 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49062314 original size:39 final size:40
Alignment explanation
Indices: 49062219--49062436 Score: 224
Period size: 40 Copynumber: 5.5 Consensus size: 40
49062209 CGAATGGTGT
* * * * *
49062219 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
49062260 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTAC-AAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
49062299 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
** *
49062339 CCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * * * *
49062379 CCGGGCTAATTCCTGAAGGCAATTATGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
49062419 CCGGG-CAATGTCCCGAAG
1 CCGGGTTAA-GTCCCGAAG
49062437 ACAATCGAGC
Statistics
Matches: 150, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 38 0.25
40 88 0.59
41 24 0.16
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:49062449 original size:120 final size:120
Alignment explanation
Indices: 49062219--49062450 Score: 263
Period size: 120 Copynumber: 1.9 Consensus size: 120
49062209 CGAATGGTGT
* ** *
49062219 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * * * * * * *
49062284 GTGCGAGTTACAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 ATGCGAATCACAAAACCGGGTCAAGTCCCGAAGACAATCGAGCGAGTTACCAAAA
* * * *
49062339 CCGGGTTAAGTCCCGAAGGCATTCATGC-GAGTTACTAAATCCGGG-CTAATTCCTGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
49062402 TATGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATCGAGCGAGT
65 TATGCGAATCAC-AAAACCGGGTCAA-GTCCCGAAGACAATCGAGCGAGT
49062451 CGCTATATCC
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
118 1 0.01
119 40 0.43
120 51 0.55
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
ATGCGAATCACAAAACCGGGTCAAGTCCCGAAGACAATCGAGCGAGTTACCAAAA
Found at i:49064605 original size:26 final size:26
Alignment explanation
Indices: 49064576--49064645 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
49064566 TTCTCTTTCA
49064576 AGCCATATAATAGGAAGCTTACAAAG
1 AGCCATATAATAGGAAGCTTACAAAG
*
49064602 AGCCAT-TAATTAGGAAGCTCACAAAG
1 AGCCATATAA-TAGGAAGCTTACAAAG
49064628 AGCCA-AT--TAGGAAGCTTA
1 AGCCATATAATAGGAAGCTTA
49064646 TCTGGGCTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
23 10 0.25
25 3 0.08
26 27 0.68
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (26 bp):
AGCCATATAATAGGAAGCTTACAAAG
Found at i:49064712 original size:26 final size:26
Alignment explanation
Indices: 49064680--49064744 Score: 105
Period size: 26 Copynumber: 2.5 Consensus size: 26
49064670 ATAAGAGCCA
*
49064680 TAATCAGGAAGTTCACAAAGAACTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
*
49064706 TAATCAGGAAGCTCACAAAGAGCTTT
1 TAATCAGGAAGCTCACAAAGAACTTT
49064732 TAATCAGG-AGCTC
1 TAATCAGGAAGCTC
49064745 CGGATAGCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
25 5 0.14
26 32 0.86
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (26 bp):
TAATCAGGAAGCTCACAAAGAACTTT
Found at i:49081044 original size:20 final size:21
Alignment explanation
Indices: 49081019--49081059 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
49081009 GAGCGAAACT
49081019 GCCCTC-GATGTCGCAACATA
1 GCCCTCTGATGTCGCAACATA
*
49081039 GCCCTCTTATGTCGCAACATA
1 GCCCTCTGATGTCGCAACATA
49081060 CCCCCTACGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.24
Consensus pattern (21 bp):
GCCCTCTGATGTCGCAACATA
Found at i:49081281 original size:19 final size:19
Alignment explanation
Indices: 49081238--49081274 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
49081228 TAGGGTTTTG
*
49081238 ATTATTAGGTTTTTATTTA
1 ATTATTAGGTTTTTACTTA
49081257 ATTATTA-GTTTTTACTTA
1 ATTATTAGGTTTTTACTTA
49081275 GGTTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (19 bp):
ATTATTAGGTTTTTACTTA
Found at i:49083146 original size:3 final size:3
Alignment explanation
Indices: 49083138--49083192 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
49083128 TTTATTTAGT
49083138 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
49083186 TCA TTA T
1 TTA TTA T
49083193 CATCTTGCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:49085795 original size:27 final size:26
Alignment explanation
Indices: 49085654--49085802 Score: 122
Period size: 27 Copynumber: 5.6 Consensus size: 26
49085644 TTAGTTTACC
* * *
49085654 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCTCGATTTGTA
* * *
49085680 AAATTAC-CAAAGTACCCCTGATTTATA
1 AAATTACTGAAA-TACCTC-GATTTGTA
** *
49085707 AAATTACCCAAATATCCTCAATTTGTA
1 AAATTACTGAAATA-CCTCGATTTGTA
* *
49085734 AAATTACCGAAATACCCTC-AGTTTGCA
1 AAATTACTGAAATA-CCTCGA-TTTGTA
49085761 AAATTACTGAAATATCCTCGATTTGTA
1 AAATTACTGAAATA-CCTCGATTTGTA
*
49085788 AAATTACTAAAATAC
1 AAATTACTGAAATAC
49085803 TCTTATAAGA
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.03
26 15 0.15
27 77 0.75
28 8 0.08
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (26 bp):
AAATTACTGAAATACCTCGATTTGTA
Found at i:49085801 original size:54 final size:54
Alignment explanation
Indices: 49085648--49085802 Score: 170
Period size: 54 Copynumber: 2.9 Consensus size: 54
49085638 AATACTTTAG
* * * * * *
49085648 TTTACCAAATTACTGAAATA-CCCCCAGTTGTAAAATTACCAAAGTACCCCTGA
1 TTTACAAAATTACTGAAATATCCTCAATTTGTAAAATTACCAAAATACCCCAGA
* ** *
49085701 TTTATAAAATTACCCAAATATCCTCAATTTGTAAAATTACCGAAATACCCTCAG-
1 TTTACAAAATTACTGAAATATCCTCAATTTGTAAAATTACCAAAATACCC-CAGA
* * *
49085755 TTTGCAAAATTACTGAAATATCCTCGATTTGTAAAATTACTAAAATAC
1 TTTACAAAATTACTGAAATATCCTCAATTTGTAAAATTACCAAAATAC
49085803 TCTTATAAGA
Statistics
Matches: 83, Mismatches: 17, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
53 16 0.19
54 65 0.78
55 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACTGAAATATCCTCAATTTGTAAAATTACCAAAATACCCCAGA
Found at i:49085962 original size:27 final size:27
Alignment explanation
Indices: 49085679--49086047 Score: 169
Period size: 27 Copynumber: 13.7 Consensus size: 27
49085669 CCCCAGTTGT
* *
49085679 AAAATTACCAAAGTACCC-CTGATTTAT
1 AAAATTACCAAAATACCCTC-GATTTAC
* * * **
49085706 AAAATTACCCAAATATCCTCAATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* *
49085733 AAAATTACCGAAATACCCTC-AGTTTGC
1 AAAATTACCAAAATACCCTCGA-TTTAC
** * **
49085760 AAAATTACTGAAATATCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTAC
* * * * *
49085787 AAAATTACTAAAATACTCT-TA-TAAG
1 AAAATTACCAAAATACCCTCGATTTAC
*** *
49085812 ATAGAATTACCATTTTACCCTCGTTTTAC
1 A-A-AATTACCAAAATACCCTCGATTTAC
* ****
49085841 AAAATTATCGTTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* *** *
49085868 AGAATTACCATTTTACCCTTGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ***
49085895 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
** * *
49085922 -AAATTACTGAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTCGATTTAC
* ** *
49085948 AAAATTACCAGAATACCCTCGATCAAT
1 AAAATTACCAAAATACCCTCGATTTAC
*
49085975 AAAATTACCAAAATACCCCTGGATTGT--
1 AAAATTACCAAAATA-CCCTCGATT-TAC
**
49086002 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTACCAAAATACCCTC-GATTTAC
* *
49086029 GAAATTACCGAAATACCCT
1 AAAATTACCAAAATACCCT
49086048 TGTAGGGTAG
Statistics
Matches: 270, Mismatches: 58, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
25 3 0.01
26 28 0.10
27 226 0.84
28 10 0.04
29 3 0.01
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTAC
Found at i:49086068 original size:27 final size:27
Alignment explanation
Indices: 49086031--49086440 Score: 549
Period size: 27 Copynumber: 15.2 Consensus size: 27
49086021 TGATTTGTGA
* *
49086031 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086058 AATAACTGAAATACCCCTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
49086085 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086112 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
49086139 AATTACTGAAATATCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086166 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
49086193 AATTA-TCGGAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
49086220 AATTACTGAAATACCCTTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086247 AATTA-TAGCAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
49086274 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
49086301 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086328 AATTACTGAAACACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
49086355 AATTACTGAAGTACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
49086382 AATTACCGAGATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
49086409 AATTAATGAGATACCCTTGT-GGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
49086435 AATTAC
1 AATTAC
49086441 CATTTTACCC
Statistics
Matches: 340, Mismatches: 39, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
26 11 0.03
27 327 0.96
28 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:49086070 original size:81 final size:81
Alignment explanation
Indices: 49085985--49086413 Score: 533
Period size: 81 Copynumber: 5.3 Consensus size: 81
49085975 AAAATTACCA
* ** * ** *
49085985 AAATACCCCTGGATTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTACCGAAATACCCT
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCGAAATACCCC
*
49086048 TGTAGGGTAGAATAACTG
64 TGTAGGGTAGAATTACTG
* *
49086066 AAATACCCCTGTAGAGTAGAATTA-CAGAAATACCCCTGTAGGGTAGAATTACCGGAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTACCA-AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
49086130 GTAGGGTAGAATTACTG
65 GTAGGGTAGAATTACTG
* ** * *
49086147 AAATATCCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTATCGGAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
49086212 TAGGGTAGAATTACTG
66 TAGGGTAGAATTACTG
* * * * * *
49086228 AAATACCCTTGTAAGGTAGAATTA-TAGCAATACCCCTATAGGGTAGAATTATCGAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTACCA-AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCT
49086292 GTAGGGTAGAATTACTG
65 GTAGGGTAGAATTACTG
** * * * *
49086309 AAATACCCCTGTAGGGTAGAATTACTGAAACACCCCTGTATGGTAGAATTACTGAAGTACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
*
49086374 TAGGGTAGAATTACCG
66 TAGGGTAGAATTACTG
*
49086390 AGATACCCCTGTAGGGTAGAATTA
1 AAATACCCCTGTAGGGTAGAATTA
49086414 ATGAGATACC
Statistics
Matches: 308, Mismatches: 34, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.01
81 302 0.98
82 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTG
Found at i:49086821 original size:22 final size:22
Alignment explanation
Indices: 49086788--49086846 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
49086778 CACGTTATCG
49086788 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
49086810 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
49086832 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
49086847 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:49087217 original size:19 final size:19
Alignment explanation
Indices: 49087195--49087252 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
49087185 TTTTGATTTT
49087195 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
49087214 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
49087226 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
49087245 TGATTCTG
1 TGATTCTG
49087253 ATTTTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:49087222 original size:6 final size:6
Alignment explanation
Indices: 49087207--49087294 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
49087197 ATTCTGTTAC
* * *
49087207 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
49087256 TTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
49087295 AGTTTTGATA
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:49087229 original size:31 final size:31
Alignment explanation
Indices: 49087192--49087294 Score: 170
Period size: 31 Copynumber: 3.3 Consensus size: 31
49087182 ACATTTTGAT
49087192 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
49087223 TTTTGATTCTGTTACCTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
* * *
49087254 TTTTGATTCTGTCACCTAATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATTCTGA
*
49087285 TTCTGATTCT
1 TTTTGATTCT
49087295 AGTTTTGATA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.50
Consensus pattern (31 bp):
TTTTGATTCTGTTACCTGATACTGATTCTGA
Found at i:49090115 original size:30 final size:30
Alignment explanation
Indices: 49090071--49090159 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
49090061 CAAAGATAAC
*
49090071 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
49090100 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
49090130 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
49090160 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:49090119 original size:15 final size:14
Alignment explanation
Indices: 49090071--49090153 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
49090061 CAAAGATAAC
*
49090071 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
49090085 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
49090100 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
49090115 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
49090130 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
49090145 AAGAAACCC
1 AAGAAACCC
49090154 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:49090159 original size:15 final size:15
Alignment explanation
Indices: 49090082--49090159 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
49090072 AGAAAACCGA
49090082 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
49090097 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
49090111 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
49090126 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49090142 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49090157 ATA
1 ATA
49090160 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49092298 original size:40 final size:39
Alignment explanation
Indices: 49092215--49092406 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
49092205 TTGAATGATG
* * * * *
49092215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
49092255 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
49092295 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
49092334 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
49092375 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
49092407 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:49092360 original size:79 final size:81
Alignment explanation
Indices: 49092215--49092406 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
49092205 TTGAATGATG
* * * *
49092215 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
49092279 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
49092295 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
49092358 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
49092375 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
49092407 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:49092761 original size:8 final size:8
Alignment explanation
Indices: 49092748--49092775 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
49092738 TGCTTACTCC
49092748 GTTTCTCT
1 GTTTCTCT
49092756 GTTTCTCT
1 GTTTCTCT
49092764 GTTTCTCT
1 GTTTCTCT
49092772 GTTT
1 GTTT
49092776 TATAGATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.00, C:0.21, G:0.14, T:0.64
Consensus pattern (8 bp):
GTTTCTCT
Found at i:49095173 original size:27 final size:27
Alignment explanation
Indices: 49095123--49095492 Score: 146
Period size: 27 Copynumber: 13.7 Consensus size: 27
49095113 CCCCCAGTTG
*
49095123 TAAAATTA-CCAAAGTACCCCCGATTTA
1 TAAAATTACCCAAA-TACCCTCGATTTA
* *
49095150 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCCAAATACCCTCGATTTA
* *
49095177 TAAAATTATCGAAATACCCTC-AGTTTGCA
1 TAAAATTACCCAAATACCCTCGA-TTT--A
** *
49095206 -AAAATTACTAAAATACCCTCGATTTG
1 TAAAATTACCCAAATACCCTCGATTTA
** * **
49095232 TAAAATTACTGAAATA-CTTCTG-TAAGA
1 TAAAATTACCCAAATACCCTC-GAT-TTA
* **
49095259 TAGAATTA-CCATTTTACCCTCGATTTA
1 TAAAATTACCCA-AATACCCTCGATTTA
* * **** *
49095286 TAGAATTATCGTTTTACCTTCGATTTA
1 TAAAATTACCCAAATACCCTCGATTTA
* * **
49095313 CAGAATTA-CCATTTTACCCTCGATTTA
1 TAAAATTACCCA-AATACCCTCGATTTA
* * ** *
49095340 CAGAATTA-CCATTTTACCCTCGGTTTA
1 TAAAATTACCCA-AATACCCTCGATTTA
* ** * *
49095367 TAAATTTACTGAAATACCCTTGGTTTA
1 TAAAATTACCCAAATACCCTCGATTTA
* * **
49095394 CAAAATTACCAAAATACCCTCGATCAA
1 TAAAATTACCCAAATACCCTCGATTTA
* * *
49095421 TAAAATTACCAAAATACCC-CTGGTTTG
1 TAAAATTACCCAAATACCCTC-GATTTA
* * *
49095448 TAAAATTACCAAAATACCCTTGATTTG
1 TAAAATTACCCAAATACCCTCGATTTA
* *
49095475 TGAAATTACCAAAATACC
1 TAAAATTACCCAAATACC
49095493 ATTGTAGGGT
Statistics
Matches: 271, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
26 8 0.03
27 231 0.85
28 31 0.11
29 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
TAAAATTACCCAAATACCCTCGATTTA
Found at i:49095219 original size:28 final size:27
Alignment explanation
Indices: 49095099--49095248 Score: 103
Period size: 27 Copynumber: 5.6 Consensus size: 27
49095089 TTAGTTTACC
* * *
49095099 AAATTACTGAAAA-ACCC-CCAGTTGTA
1 AAATTACT-AAAATACCCTCGATTTGAA
* * *
49095125 AAATTACCAAAGTACCCCCGATTT-ATA
1 AAATTACTAAAATACCCTCGATTTGA-A
** * *
49095152 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGAA
*
49095179 AAATTA-TCGAAATACCCTC-AGTTTGCAA
1 AAATTACT-AAAATACCCTCGA-TTTG-AA
*
49095207 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGAA
*
49095234 AAATTACTGAAATAC
1 AAATTACTAAAATAC
49095249 TTCTGTAAGA
Statistics
Matches: 98, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
25 3 0.03
26 12 0.12
27 60 0.61
28 21 0.21
29 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGAA
Found at i:49095318 original size:54 final size:54
Alignment explanation
Indices: 49095260--49095366 Score: 169
Period size: 54 Copynumber: 2.0 Consensus size: 54
49095250 TCTGTAAGAT
* * * *
49095260 AGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCTTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
*
49095314 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGGTTTA
1 AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA
49095367 TAAATTTACT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.40
Consensus pattern (54 bp):
AGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAC
Found at i:49095412 original size:81 final size:81
Alignment explanation
Indices: 49095260--49095417 Score: 187
Period size: 81 Copynumber: 2.0 Consensus size: 81
49095250 TCTGTAAGAT
*** * *
49095260 AGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTACCTTCGATTTACAGAATTACCAT
1 AGAATTACCATTTTACCCTCGATTTATAGAATTATCGAAATACCTTCGATTTACAAAATTACCAA
**
49095325 TTTACCCTCGATTTAC
66 AATACCCTCGATTTAC
* *
49095341 AGAATTACCATTTTACCCTCGGTTTATA-AATT-TACTGAAATACCCTT-GGTTTACAAAATTAC
1 AGAATTACCATTTTACCCTCGATTTATAGAATTAT-C-GAAATA-CCTTCGATTTACAAAATTAC
49095403 CAAAATACCCTCGAT
63 CAAAATACCCTCGAT
49095418 CAATAAAATT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 1 0.02
80 5 0.08
81 55 0.85
82 4 0.06
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (81 bp):
AGAATTACCATTTTACCCTCGATTTATAGAATTATCGAAATACCTTCGATTTACAAAATTACCAA
AATACCCTCGATTTAC
Found at i:49095508 original size:27 final size:27
Alignment explanation
Indices: 49095478--49095780 Score: 401
Period size: 27 Copynumber: 11.3 Consensus size: 27
49095468 TGATTTGTGA
* **
49095478 AATTACCAAAATACCATTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
49095505 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49095532 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49095559 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49095586 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49095613 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
49095640 AATTACCGGAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49095667 AATTACCGGAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49095693 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
49095720 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
49095747 AATTACCGAGGTACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
49095774 AATTACC
1 AATTACC
49095781 ATTTTACCCA
Statistics
Matches: 245, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 25 0.10
27 220 0.90
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:49095509 original size:54 final size:55
Alignment explanation
Indices: 49095397--49095781 Score: 351
Period size: 54 Copynumber: 7.1 Consensus size: 55
49095387 TGGTTTACAA
* * * ** *
49095397 AATTACCAAAATACCCTCGATCA--ATAAAATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCAAAATACCCTTGAT-AGGGTAGAATTACCAAAATACCCCT-GTAGGGTAG
** **
49095451 AATTACCAAAATACCCTTGAT-TTGT-GAAATTACCAAAATACCATTGTAGGGTAG
1 AATTACCAAAATACCCTTGATAGGGTAG-AATTACCAAAATACCCCTGTAGGGTAG
** *
49095505 AATTACTGAAATACCCTT-ATAGGGTAGAATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
** * **
49095559 AATTACCGGAATACCCCTG-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* ** *
49095613 AATTACCAAAATACCCCT-ATAGGGTAGAATTACCGGAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
** **
49095667 AATTACCGGAATACCC-TG-TAGGGTAGAATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
** * * ** * * *
49095720 AATTACTGAAATACCCCTG-TAGGGTAGAATTACCGAGGTACCCTTGTGGGGTAA
1 AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
49095774 AATTACCA
1 AATTACCA
49095782 TTTTACCCAT
Statistics
Matches: 282, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
53 53 0.19
54 228 0.81
55 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (55 bp):
AATTACCAAAATACCCTTGATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:49095789 original size:134 final size:135
Alignment explanation
Indices: 49095478--49095781 Score: 414
Period size: 134 Copynumber: 2.3 Consensus size: 135
49095468 TGATTTGTGA
** * * * * * *
49095478 AATTACCAAAATACCATTGTAGGGTAGAATTA-CTGAAATACCCTTATAGGGTAGAATTACCAAA
1 AATTACCAAAATACCCCTATAGGGTAAAATTACCAG-AATACCCCTGTATGGTAGAATTACCAAA
49095542 ATACCCCTGCAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
65 ATACCCCTGCAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTA
49095607 GGGTAG
130 GGGTAG
* * **
49095613 AATTACCAAAATACCCCTATAGGGTAGAATTACCGGAATACCCCTGTATGGTAGAATTACCGGAA
1 AATTACCAAAATACCCCTATAGGGTAAAATTACCAGAATACCCCTGTATGGTAGAATTACCAAAA
*
49095678 TA-CCCTGTAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAG
66 TACCCCTGCAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAG
49095742 GGTAG
131 GGTAG
* ** * * *
49095747 AATTACCGAGGTACCCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCTATAGGGTAAAATTACCA
49095782 TTTTACCCAT
Statistics
Matches: 150, Mismatches: 18, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
134 93 0.62
135 55 0.37
136 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (135 bp):
AATTACCAAAATACCCCTATAGGGTAAAATTACCAGAATACCCCTGTATGGTAGAATTACCAAAA
TACCCCTGCAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAG
GGTAG
Found at i:49096160 original size:22 final size:22
Alignment explanation
Indices: 49096127--49096185 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
49096117 CACGTTATCG
49096127 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
49096149 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
49096171 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
49096186 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:49096580 original size:19 final size:19
Alignment explanation
Indices: 49096553--49096606 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
49096543 CATTCACATT
49096553 CTGATTTTTGATTCTGTTAC
1 CTGA-TTTTGATTCTGTTAC
*
49096573 CTGATTTTGATTCTTTTAC
1 CTGATTTTGATTCTGTTAC
**
49096592 CTGATACTGATTCTG
1 CTGATTTTGATTCTG
49096607 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 26 0.87
20 4 0.13
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.52
Consensus pattern (19 bp):
CTGATTTTGATTCTGTTAC
Found at i:49096613 original size:12 final size:12
Alignment explanation
Indices: 49096592--49096658 Score: 57
Period size: 12 Copynumber: 5.5 Consensus size: 12
49096582 ATTCTTTTAC
49096592 CTGATACTGATT
1 CTGATACTGATT
*
49096604 CTGATTCTGATT
1 CTGATACTGATT
* *
49096616 CCG-TCACCTAATT
1 CTGAT-A-CTGATT
49096629 CTGATACTGATT
1 CTGATACTGATT
*
49096641 CTGATTCT-AGTT
1 CTGATACTGA-TT
49096653 CTGATA
1 CTGATA
49096659 ATGTTTCTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
11 2 0.05
12 32 0.74
13 8 0.19
14 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.42
Consensus pattern (12 bp):
CTGATACTGATT
Found at i:49096658 original size:24 final size:24
Alignment explanation
Indices: 49096627--49096672 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
49096617 CGTCACCTAA
*
49096627 TTCTGATACTGATTCTGATTCTAG
1 TTCTGATAATGATTCTGATTCTAG
* *
49096651 TTCTGATAATGTTTCTTATTCT
1 TTCTGATAATGATTCTGATTCT
49096673 GTAATGGGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (24 bp):
TTCTGATAATGATTCTGATTCTAG
Found at i:49099393 original size:26 final size:25
Alignment explanation
Indices: 49099349--49099403 Score: 74
Period size: 26 Copynumber: 2.2 Consensus size: 25
49099339 AGATGAAAGC
*
49099349 TTTATTTGTTTTGTTTATTTTAACA
1 TTTATTTCTTTTGTTTATTTTAACA
* *
49099374 TTTATTTCTTTTTTATTATTTTAACC
1 TTTATTTCTTTTGT-TTATTTTAACA
49099400 TTTA
1 TTTA
49099404 ATAACTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.69
Consensus pattern (25 bp):
TTTATTTCTTTTGTTTATTTTAACA
Found at i:49101506 original size:30 final size:29
Alignment explanation
Indices: 49101412--49101513 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
49101402 TATAGTGAAT
* * *
49101412 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
49101441 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
49101469 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
49101499 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
49101514 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:49111605 original size:30 final size:29
Alignment explanation
Indices: 49111511--49111612 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
49111501 TATAGTGAAT
* * *
49111511 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
49111540 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
49111568 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
49111598 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
49111613 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:49115647 original size:46 final size:46
Alignment explanation
Indices: 49115594--49115769 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
49115584 TATTTGGGCA
*
49115594 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49115640 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
49115685 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
49115733 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49115770 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:49115749 original size:93 final size:93
Alignment explanation
Indices: 49115590--49115762 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
49115580 GGGATATTTG
* *
49115590 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49115655 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
49115683 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49115748 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
49115763 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49118288 original size:24 final size:25
Alignment explanation
Indices: 49118245--49118360 Score: 85
Period size: 25 Copynumber: 4.7 Consensus size: 25
49118235 CCATTAGATA
* *
49118245 TTACCGATTCTTAGCTCGTATGAGC
1 TTACCGATTCATAGCTCGTAAGAGC
49118270 TTACCGATT-ATAGCTCGTAAGAGC
1 TTACCGATTCATAGCTCGTAAGAGC
* ** * ** *
49118294 TTATCGATTCCCAACTCACATGAGC
1 TTACCGATTCATAGCTCGTAAGAGC
* *
49118319 TTACTGATTTCCAT--CTCGTGAGAGC
1 TTACCGA-TT-CATAGCTCGTAAGAGC
*
49118344 ATACCGATTCATAGCTC
1 TTACCGATTCATAGCTC
49118361 ATCTGAGCAT
Statistics
Matches: 67, Mismatches: 19, Indels: 10
0.70 0.20 0.10
Matches are distributed among these distances:
23 3 0.04
24 23 0.34
25 38 0.57
26 2 0.03
27 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (25 bp):
TTACCGATTCATAGCTCGTAAGAGC
Found at i:49123574 original size:28 final size:28
Alignment explanation
Indices: 49123534--49123637 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
49123524 ATTGCATGAC
*
49123534 TATGAAAGTGATTGGGCCTGACGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
49123562 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
49123590 TATGAATGTGATTTGGGCCTAATGGGTCA
1 TATGAAAGTGA-TTGGGCCTGATGGGCCA
* *
49123619 TATGAATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
49123638 AAAGGGGCCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.65
29 24 0.35
ACGTcount: A:0.25, C:0.12, G:0.34, T:0.29
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:49123615 original size:29 final size:28
Alignment explanation
Indices: 49123534--49123654 Score: 134
Period size: 28 Copynumber: 4.2 Consensus size: 28
49123524 ATTGCATGAC
* * *
49123534 TATGAAAGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
49123562 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
*
49123590 TATGAATGTGATTTGGGCCTAATGGGTCA
1 TATGAATGTGA-TTGGGCCTAATGGGCCA
* *
49123619 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
49123648 AATGAAT
1 TATGAAT
49123655 AGGTATGGAT
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 44 0.54
29 37 0.46
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:49127705 original size:25 final size:26
Alignment explanation
Indices: 49127677--49127734 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
49127667 TCGCACGAGT
* *
49127677 TGTAAATC-GATATGCTCTCTTAAGC
1 TGTAAATCTGATATGATCTCATAAGC
* *
49127702 TGTAAA-CTGGTATGATCTCATGAGC
1 TGTAAATCTGATATGATCTCATAAGC
49127727 TGTAAATC
1 TGTAAATC
49127735 AGTAAACTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (26 bp):
TGTAAATCTGATATGATCTCATAAGC
Found at i:49138202 original size:20 final size:20
Alignment explanation
Indices: 49138177--49138216 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
49138167 TGGTAGTTGT
49138177 GTTTCTACAGCAGTTACTTG
1 GTTTCTACAGCAGTTACTTG
*
49138197 GTTTCTACTGCAGTTACTTG
1 GTTTCTACAGCAGTTACTTG
49138217 TTCCTCAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42
Consensus pattern (20 bp):
GTTTCTACAGCAGTTACTTG
Found at i:49141131 original size:12 final size:13
Alignment explanation
Indices: 49141114--49141142 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
49141104 CTCATACATG
49141114 AATAAATAAA-GC
1 AATAAATAAATGC
49141126 AATAAATAAATGC
1 AATAAATAAATGC
49141139 AATA
1 AATA
49141143 GTTATAGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:49156526 original size:40 final size:40
Alignment explanation
Indices: 49156481--49156646 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49156471 CGGAATATAA
49156481 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * *
49156521 CCGGATA-AATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49156560 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49156600 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49156639 CCGGATAT
1 CCGGATAT
49156647 CATTCAATTT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 1 0.01
39 48 0.45
40 58 0.54
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49162561 original size:27 final size:26
Alignment explanation
Indices: 49162523--49162772 Score: 211
Period size: 27 Copynumber: 9.3 Consensus size: 26
49162513 GGTCGTTAAG
*
49162523 ACCCCTGGTTTGTAAAATTATCGAAAT
1 ACCCCTAGTTTGTAAAATTA-CGAAAT
*
49162550 ACCCCTGGTTTGTAAAATTACCGAAAT
1 ACCCCTAGTTTGTAAAATTA-CGAAAT
* *
49162577 GCCCCCT-GTTTGTAAAATTACTAAAAT
1 -ACCCCTAGTTTGTAAAATTAC-GAAAT
* * * *
49162604 ACCCCCAATTTATAAAATTACCAAAAT
1 ACCCCTAGTTTGTAAAATTA-CGAAAT
* *
49162631 ACCCCTAGATTATAAAATTACTGAAAT
1 ACCCCTAGTTTGTAAAATTAC-GAAAT
* * *
49162658 A-GCCTTGATTTGTAAAGTTACGAAAAT
1 ACCCCTAG-TTTGTAAAATTACG-AAAT
*
49162685 ACCCCTAGTTTGTAAAATTATCAAAAT
1 ACCCCTAGTTTGTAAAATTA-CGAAAT
*
49162712 AGCCCC-AGTTTGTAAAATTATCGAAAC
1 A-CCCCTAGTTTGTAAAATTA-CGAAAT
*
49162739 ACCCC-CGATTTGTAAAATTACCGAAAT
1 ACCCCTAG-TTTGTAAAATTA-CGAAAT
49162766 ACCCCTA
1 ACCCCTA
49162773 TAGGGTAAAA
Statistics
Matches: 185, Mismatches: 26, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
26 16 0.09
27 154 0.83
28 15 0.08
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (26 bp):
ACCCCTAGTTTGTAAAATTACGAAAT
Found at i:49162771 original size:81 final size:80
Alignment explanation
Indices: 49162523--49162772 Score: 272
Period size: 81 Copynumber: 3.1 Consensus size: 80
49162513 GGTCGTTAAG
* * * *
49162523 ACCCCTGGTTTGTAAAATTATCGAAATACCCCTGGTTTGTAAAATTACCGAAATGCCCCCTG-TT
1 ACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTA-CGAAATACCCCC-GATT
**
49162587 TGTAAAATTACTAAAAT
64 TGTAAAATTACCGAAAT
* * * * * * * **
49162604 ACCCCCAATTTATAAAATTACCAAAATACCCCTAGATTATAAAATTACTGAAATAGCCTTGATTT
1 ACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTAC-GAAATACCCCCGATTT
*
49162669 GTAAAGTTA-CGAAAAT
65 GTAAAATTACCG-AAAT
*
49162685 ACCCCTAGTTTGTAAAATTATCAAAATAGCCCC-AGTTTGTAAAATTATCGAAACACCCCCGATT
1 ACCCCTAGTTTGTAAAATTATCAAAATA-CCCCTAGTTTGTAAAATTA-CGAAATACCCCCGATT
49162749 TGTAAAATTACCGAAAT
64 TGTAAAATTACCGAAAT
49162766 ACCCCTA
1 ACCCCTA
49162773 TAGGGTAAAA
Statistics
Matches: 136, Mismatches: 27, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
80 2 0.01
81 127 0.93
82 7 0.05
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.30
Consensus pattern (80 bp):
ACCCCTAGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACGAAATACCCCCGATTTG
TAAAATTACCGAAAT
Found at i:49162876 original size:34 final size:34
Alignment explanation
Indices: 49162838--49162902 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
49162828 TTTGATTGAT
* *
49162838 TTGACTGTGATTGTATGGCTGTAATTTAACTAAC
1 TTGACTGTGATTGTACGACTGTAATTTAACTAAC
*
49162872 TTGACTGTGATTGTACGACTGTGATTTAACT
1 TTGACTGTGATTGTACGACTGTAATTTAACT
49162903 GATATACTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.25, C:0.12, G:0.22, T:0.42
Consensus pattern (34 bp):
TTGACTGTGATTGTACGACTGTAATTTAACTAAC
Found at i:49166189 original size:46 final size:46
Alignment explanation
Indices: 49166149--49166262 Score: 183
Period size: 46 Copynumber: 2.5 Consensus size: 46
49166139 TTGAGACGAG
* *
49166149 AGCTAGTGTAAGACATGTCTGGGATATGTATCAGCCTTGAGATGTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATGTA
* * *
49166195 AGCTAGTGTGAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATGTA
49166241 AGCTAGTGTAAGACATGTCTGG
1 AGCTAGTGTAAGACATGTCTGG
49166263 TGTAACACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATGTA
Found at i:49167663 original size:40 final size:40
Alignment explanation
Indices: 49167618--49167784 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49167608 CGGAATATAA
49167618 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49167658 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49167698 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49167738 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49167777 CCGGATAT
1 CCGGATAT
49167785 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49175674 original size:40 final size:40
Alignment explanation
Indices: 49175629--49175795 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
49175619 CGGAATATAA
49175629 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49175669 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
49175709 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
49175749 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
49175788 CCGGATAT
1 CCGGATAT
49175796 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49179329 original size:46 final size:46
Alignment explanation
Indices: 49179276--49179451 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49179266 TATTTGGGCA
49179276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
49179322 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
49179369 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
49179415 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49179452 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:49179431 original size:93 final size:93
Alignment explanation
Indices: 49179272--49179443 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49179262 GGGATATTTG
* *
49179272 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49179337 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
49179365 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49179430 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49179444 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49182445 original size:15 final size:15
Alignment explanation
Indices: 49182406--49182484 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
49182396 GTATCTTGGG
*
49182406 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
49182421 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
49182436 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
49182450 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
49182465 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
49182479 TTTCTT
1 TTTCTT
49182485 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49182469 original size:29 final size:29
Alignment explanation
Indices: 49182397--49182483 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
49182387 CATAGTATCG
* * * *
49182397 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
49182427 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
49182456 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
49182484 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:49184921 original size:46 final size:46
Alignment explanation
Indices: 49184868--49185043 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49184858 TATTTGGGCA
49184868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
49184914 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
49184961 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
49185007 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49185044 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:49185023 original size:93 final size:93
Alignment explanation
Indices: 49184864--49185035 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49184854 GGGATATTTG
* *
49184864 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49184929 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
49184957 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49185022 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49185036 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49188018 original size:15 final size:15
Alignment explanation
Indices: 49187998--49188066 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
49187988 GTATCTTGGG
49187998 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
49188013 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
49188028 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
49188043 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
49188058 TTTCTTTAT
1 TTTCTTTAT
49188067 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:49188067 original size:30 final size:30
Alignment explanation
Indices: 49187989--49188076 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
49187979 CATAGTATCG
* * * *
49187989 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
49188019 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
49188049 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
49188077 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:49190512 original size:46 final size:46
Alignment explanation
Indices: 49190459--49190634 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49190449 ATATTTGGCA
49190459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
49190505 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
49190552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
49190598 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49190635 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:49190614 original size:93 final size:93
Alignment explanation
Indices: 49190455--49190626 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49190445 TGGGATATTT
* *
49190455 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49190520 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
49190548 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49190613 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49190627 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49195432 original size:20 final size:21
Alignment explanation
Indices: 49195404--49195442 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
49195394 AAGAATTTGC
*
49195404 ATTATTTGAAATAA-AAAAAT
1 ATTAATTGAAATAAGAAAAAT
49195424 ATTAATTGAAATAAGAAAA
1 ATTAATTGAAATAAGAAAA
49195443 GAAGAACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (21 bp):
ATTAATTGAAATAAGAAAAAT
Found at i:49197613 original size:39 final size:39
Alignment explanation
Indices: 49197558--49197664 Score: 178
Period size: 39 Copynumber: 2.7 Consensus size: 39
49197548 GTGTATTCGG
*
49197558 ACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGA
1 ACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGA
*
49197597 ACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGG
1 ACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGA
* *
49197636 ACTTAAGGTCCACAGGCTACGTGCTGGAA
1 ACTTAGGGTCCACAGGCTATGTGCTGGAA
49197665 ATATGCCCGG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
ACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCGA
Found at i:49198895 original size:50 final size:50
Alignment explanation
Indices: 49198693--49198896 Score: 239
Period size: 50 Copynumber: 4.1 Consensus size: 50
49198683 GGGGTGTTAC
* * *
49198693 ACCAGATTATTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
1 ACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
* * * * * *
49198743 ACTC-GATAGCTTCGATCACGTGTGTAGTACTAAGTGCAGACTACTACGTGT
1 AC-CAGATTG-TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
* * * *
49198794 ATCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCACGCTACTATGTGT
1 ACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
** *
49198844 ACCAGATTGTTAGGTCGTATGTGTAGTACTAAGTACAGGCTACTATGTGT
1 ACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
49198894 ACC
1 ACC
49198897 GAAGAGCTTC
Statistics
Matches: 128, Mismatches: 23, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
50 88 0.69
51 40 0.31
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
ACCAGATTGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGT
Found at i:49203387 original size:29 final size:29
Alignment explanation
Indices: 49203352--49203425 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
49203342 GTTGTGAGAT
* *
49203352 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
49203381 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
49203410 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49203426 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:49205209 original size:43 final size:43
Alignment explanation
Indices: 49205145--49205315 Score: 227
Period size: 43 Copynumber: 4.0 Consensus size: 43
49205135 TCTTAACTCA
* * **
49205145 TTCACCGGAATT-TTGCCTGCTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * *
49205187 TTCACCGGCATTATAGCCTGCTAGGCCCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * * *
49205230 CTCACTGGCATTATAACCTGCTAGGCCCCAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
49205273 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGAATATCA
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
49205316 CATTTCGATA
Statistics
Matches: 109, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 11 0.10
43 92 0.84
44 6 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:49207630 original size:40 final size:40
Alignment explanation
Indices: 49207556--49207779 Score: 294
Period size: 40 Copynumber: 5.6 Consensus size: 40
49207546 AACCCAAGTA
*
49207556 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTCGCACAAATG
* *
49207595 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
* *
49207635 CCTTCGGGACTTAGCCCGGGTATAGAAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG--TC-ACTCGCACAAATG
* *
49207678 CCTTCGGGACTTCA-CCCAGATATAGTCACTAGCA-AAATG
1 CCTTCGGGACTT-AGCCCGGATATAGTCACTCGCACAAATG
**
49207717 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
49207757 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49207780 CATCCGAATA
Statistics
Matches: 162, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 45 0.28
40 79 0.49
41 2 0.01
42 1 0.01
43 33 0.20
44 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTCGCACAAATG
Found at i:49207676 original size:83 final size:79
Alignment explanation
Indices: 49207556--49207779 Score: 335
Period size: 79 Copynumber: 2.8 Consensus size: 79
49207546 AACCCAAGTA
* * *
49207556 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
49207620 TCACTAGCACAAATG
66 TCACTAGCA-AAATG
* *
49207635 CCTTCGGGACTTAGCCCGGGTATAGAAACTACTCGCACAAATGCCTTCGGGACTTCA-CCCAGAT
1 CCTTCGGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGGACTT-AGCCCGGAT
49207699 ATAGTCACTAGCAAAATG
62 ATAGTCACTAGCAAAATG
*
49207717 CCTTCGGGACTTAGCCCGGATATAGGAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
49207780 CATCCGAATA
Statistics
Matches: 131, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
78 1 0.01
79 46 0.35
80 9 0.07
81 2 0.02
82 29 0.22
83 43 0.33
84 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCAAAATG
Found at i:49207773 original size:122 final size:122
Alignment explanation
Indices: 49207556--49207775 Score: 336
Period size: 122 Copynumber: 1.8 Consensus size: 122
49207546 AACCCAAGTA
* * * * * *
49207556 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGATTCACCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGG
*
49207621 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGAAACTACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGAAACTACTCGCACAAATG
49207678 CCTTCGGGACTTCACCCAGATATAGTC-ACTAGCA-AAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGA-TTCACCCAGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
49207741 GGAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
64 GGAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
49207776 ATATCATCCG
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
122 69 0.78
123 18 0.20
124 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (122 bp):
CCTTCGGGATTCACCCAGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGG
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGAAACTACTCGCACAAATG
Found at i:49212101 original size:49 final size:49
Alignment explanation
Indices: 49212045--49212455 Score: 678
Period size: 49 Copynumber: 8.4 Consensus size: 49
49212035 TACATATATG
* * *
49212045 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49212094 TGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49212143 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
49212192 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
49212241 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49212290 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * * *
49212339 TGTGATGAGGCCTAATGACCGATGTGGTAAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
49212388 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
49212437 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
49212456 TAATGTAAAA
Statistics
Matches: 344, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 344 1.00
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:49212243 original size:27 final size:27
Alignment explanation
Indices: 49212213--49212297 Score: 72
Period size: 27 Copynumber: 3.3 Consensus size: 27
49212203 CTAATGGCCG
49212213 ATGTGATGAATGTGAAAGTGGATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
* *** **
49212240 ATGTGATG-AGGCCTAA-TGGCCG---
1 ATGTGATGAATGTGAAAGTGGATGTAT
*
49212262 ATGTGATGAATGTGAAAGTGTATGTAT
1 ATGTGATGAATGTGAAAGTGGATGTAT
49212289 ATGTGATGA
1 ATGTGATGA
49212298 GGCCTAATGG
Statistics
Matches: 40, Mismatches: 13, Indels: 10
0.63 0.21 0.16
Matches are distributed among these distances:
22 8 0.20
23 4 0.10
24 3 0.08
25 4 0.10
26 4 0.10
27 17 0.43
ACGTcount: A:0.31, C:0.05, G:0.33, T:0.32
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAGTGGATGTAT
Found at i:49212607 original size:37 final size:37
Alignment explanation
Indices: 49212557--49212641 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
49212547 GGAATATGTT
*
49212557 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49212594 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49212631 CCGGGTAAGAC
1 CCGGGTAAGAC
49212642 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:49219799 original size:40 final size:40
Alignment explanation
Indices: 49219724--49219908 Score: 252
Period size: 40 Copynumber: 4.6 Consensus size: 40
49219714 AACCCAAGTA
*
49219724 CCTTCGGGATTTAG-CCGGATATAGCAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACT-AGCACAAATG
*
49219763 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
*
49219803 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
*
49219846 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
49219886 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49219909 CATCCGAATA
Statistics
Matches: 131, Mismatches: 7, Indels: 15
0.86 0.05 0.10
Matches are distributed among these distances:
39 14 0.11
40 79 0.60
41 1 0.01
43 36 0.27
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:49219847 original size:83 final size:80
Alignment explanation
Indices: 49219724--49219908 Score: 291
Period size: 83 Copynumber: 2.3 Consensus size: 80
49219714 AACCCAAGTA
* *
49219724 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
49219788 TCACTAGCACAAATG
66 TCACTAGCACAAATG
* * *
49219803 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCACACAAATGCCTTCGGGACTTAGCCCGGATA
49219868 TAGTCACTAGCACAAATG
63 TAGTCACTAGCACAAATG
49219886 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49219909 CATCCGAATA
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
79 13 0.14
80 10 0.10
81 1 0.01
83 72 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:49223278 original size:20 final size:18
Alignment explanation
Indices: 49223255--49223298 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
49223245 ATAGAGAGTT
*
49223255 ACACGGGCGTGTCCAGAGCC
1 ACACGGGCGTGT-AAGA-CC
*
49223275 ACACGGGTGTGTAAGACC
1 ACACGGGCGTGTAAGACC
49223293 ACACGG
1 ACACGG
49223299 CCAACCCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 3 0.14
20 11 0.50
ACGTcount: A:0.25, C:0.30, G:0.34, T:0.11
Consensus pattern (18 bp):
ACACGGGCGTGTAAGACC
Found at i:49225849 original size:47 final size:47
Alignment explanation
Indices: 49225751--49225878 Score: 150
Period size: 47 Copynumber: 2.7 Consensus size: 47
49225741 AATCGATAAG
* ** * * * *
49225751 TACCTATACCATGGTCTGTAGCCAAATTAAGATAACTTATCCTAGAG
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTAGAA
*
49225798 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTCT-GAA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATC-CTAGAA
* *
49225845 TACCTACACCATGGCCCATAGCCAAACCAAGGTA
1 TACCTATACCATGGCCCATAGCCAAATCAAGGTA
49225879 TTATTCTCTC
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
47 68 0.97
48 2 0.03
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (47 bp):
TACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTAGAA
Found at i:49231791 original size:24 final size:25
Alignment explanation
Indices: 49231764--49231813 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
49231754 TAGAAAATGA
*
49231764 AGAAAAATG-GAAGGGAA-TGAAGAG
1 AGAAAAATGAG-AGAGAAGTGAAGAG
49231788 AGAAAAATGAGAGAGAAGTGAAGAG
1 AGAAAAATGAGAGAGAAGTGAAGAG
49231813 A
1 A
49231814 TGAGAAGGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.36, T:0.08
Consensus pattern (25 bp):
AGAAAAATGAGAGAGAAGTGAAGAG
Found at i:49234820 original size:31 final size:31
Alignment explanation
Indices: 49234783--49234852 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
49234773 ATACTGGGCT
*
49234783 AAGCCTTTTCATTATTCATATCACTAGGTCG
1 AAGCCTTTTCATTATTCATATCACTAGGCCG
* *
49234814 AAGCCTTTTCATTATTTATATCACTGGGCCG
1 AAGCCTTTTCATTATTCATATCACTAGGCCG
49234845 AAGCCTTT
1 AAGCCTTT
49234853 ACTGTAAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (31 bp):
AAGCCTTTTCATTATTCATATCACTAGGCCG
Found at i:49235101 original size:25 final size:25
Alignment explanation
Indices: 49235073--49235142 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
49235063 CTCTTTTAAT
49235073 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
49235098 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
49235123 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
49235143 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:49235274 original size:25 final size:25
Alignment explanation
Indices: 49235246--49235296 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
49235236 ATAACATATC
* *
49235246 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
*
49235271 CCTAGGGGCAAAATGGTTATTTTCA
1 CCTAGGGGCAAAATGGTCATTTTCA
49235296 C
1 C
49235297 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTCA
Found at i:49239470 original size:40 final size:40
Alignment explanation
Indices: 49239343--49239472 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
49239333 TTGCTGGAAA
* * *
49239343 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
49239383 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
49239423 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
49239463 TTATATCCGG
1 TTATATCCGG
49239473 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:49252605 original size:40 final size:40
Alignment explanation
Indices: 49252539--49252705 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
49252529 AAATTGAATG
* * *
49252539 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
49252578 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
49252618 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
49252658 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
49252698 ATATCCGG
1 ATATCCGG
49252706 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:49255413 original size:27 final size:26
Alignment explanation
Indices: 49255383--49255434 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
49255373 GGGAAAATCG
49255383 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
49255410 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
49255435 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:49262815 original size:27 final size:26
Alignment explanation
Indices: 49262785--49262836 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
49262775 GGGAAAATCG
49262785 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
49262812 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
49262837 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:49272620 original size:26 final size:26
Alignment explanation
Indices: 49272591--49272698 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
49272581 TGGTACAAAT
49272591 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
49272617 TGATAATGGATTAGGTAAATATTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
49272643 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
49272669 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49272695 TGAT
1 TGAT
49272699 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:49274181 original size:28 final size:26
Alignment explanation
Indices: 49274139--49274213 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
49274129 AAAATCAGTT
* *
49274139 AAATTACTATAATACCCCTATGTATGAA
1 AAATTACTGTTATACCCCTA-G-ATGAA
* *
49274167 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGAA
*
49274193 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
49274214 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGAA
Found at i:49274358 original size:27 final size:27
Alignment explanation
Indices: 49274318--49274524 Score: 170
Period size: 27 Copynumber: 7.2 Consensus size: 27
49274308 AGGAAGCGTC
*
49274318 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
49274345 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACATATATCTGA-T
* *
49274372 CTGGTGGCTATGCCACGATTATCTGATCAATTAT
1 CTGGTGGCTCTGCCAC-A-TA--T-ATC--TGAT
* *
49274406 CTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTG--GTG---GCTCTGCCACATATATCTGAT
*
49274438 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
* *
49274465 CTGGTGGCTCTGCCACATATATTTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
49274492 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
49274519 CTGGTG
1 CTGGTG
49274525 ACTTCGTCAC
Statistics
Matches: 148, Mismatches: 14, Indels: 36
0.75 0.07 0.18
Matches are distributed among these distances:
26 9 0.06
27 98 0.66
28 4 0.03
29 2 0.01
30 2 0.01
31 1 0.01
32 8 0.05
34 8 0.05
35 2 0.01
36 2 0.01
37 2 0.01
38 1 0.01
39 9 0.06
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:49274410 original size:66 final size:66
Alignment explanation
Indices: 49274333--49274465 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
49274323 GGCTATGCCA
49274333 CAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTATGCCACGATTATCTGA
1 CAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTATGCCACGATTATCTGA
49274398 T
66 T
*
49274399 CAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCCACGATTATCTGA
1 CAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTATGCCACGATTATCTGA
49274464 T
66 T
49274465 C
1 C
49274466 TGGTGGCTCT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (66 bp):
CAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTATGCCACGATTATCTGA
T
Found at i:49274483 original size:54 final size:53
Alignment explanation
Indices: 49274401--49274524 Score: 203
Period size: 54 Copynumber: 2.3 Consensus size: 53
49274391 TATCTGATCA
49274401 ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCCAC
1 ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCCAC
* *
49274454 GATTATCTGATCTGGTGGCTCTGCCACATATATTTGTTCTGGTGGCTCTGCCAC
1 -ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCCAC
*
49274508 AATATCTGTATCTGGTG
1 ATTATCTG-ATCTGGTG
49274525 ACTTCGTCAC
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
53 7 0.11
54 59 0.89
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTATGCCAC
Found at i:49279480 original size:26 final size:26
Alignment explanation
Indices: 49279451--49279558 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
49279441 TAGTACAAAT
49279451 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
49279477 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49279503 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
49279529 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
49279555 TGAT
1 TGAT
49279559 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:49281305 original size:32 final size:27
Alignment explanation
Indices: 49281170--49281309 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
49281160 GGAGGAAGCG
*
49281170 TCTGGTGGCTATGCCACA-ATTATCTGA
1 TCTGGTGGCTCTGCCACATA-TATCTGA
* *
49281197 T-TGGTGGCTCTACCACATATAT-TGT
1 TCTGGTGGCTCTGCCACATATATCTGA
* *
49281222 TCTGGTGGTTATGCCACGAT-TATCTGA
1 TCTGGTGGCTCTGCCAC-ATATATCTGA
* *
49281249 TCTGGTGGCTTTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGA
49281276 TCTGGTGGCTCTGCCACA-ATATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTG-A
49281303 TCTGGTG
1 TCTGGTG
49281310 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
25 3 0.03
26 41 0.43
27 51 0.54
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATATATCTGA
Found at i:49281306 original size:54 final size:53
Alignment explanation
Indices: 49281170--49281326 Score: 194
Period size: 54 Copynumber: 3.0 Consensus size: 53
49281160 GGAGGAAGCG
* *
49281170 TCTGGTGGCTATGCCACAATTATCTGAT-TGGTGGCTCTACCACATATAT-TGT
1 TCTGGTGGCTATGCCACAA-TATCTGATCTGGTGGCTTTGCCACATATATCTGT
* *
49281222 TCTGGTGGTTATGCCACGATTATCTGATCTGGTGGCTTTGCCACATATATCTGT
1 TCTGGTGGCTATGCCAC-AATATCTGATCTGGTGGCTTTGCCACATATATCTGT
* * * *
49281276 TCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 TCTGGTGGCTATGCCACAATATCTG-ATCTGGTGGCTTTGCCACATATATCT
49281327 AGCAGCCTCG
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
52 24 0.26
53 33 0.36
54 34 0.37
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (53 bp):
TCTGGTGGCTATGCCACAATATCTGATCTGGTGGCTTTGCCACATATATCTGT
Found at i:49281320 original size:27 final size:27
Alignment explanation
Indices: 49281170--49281326 Score: 118
Period size: 27 Copynumber: 5.9 Consensus size: 27
49281160 GGAGGAAGCG
49281170 TCTGGTGGCTAT-GCCACAATTATCTG-A
1 TCTGGTGGCT-TCGCCACAA-TATCTGTA
*
49281197 T-TGGTGGC-TCTACCACATATAT-TGT-
1 TCTGGTGGCTTC-GCCACA-ATATCTGTA
* *
49281222 TCTGGTGG-TTATGCCACGATTATCTG-A
1 TCTGGTGGCTT-CGCCAC-AATATCTGTA
*
49281249 TCTGGTGGCTTTGCCACATATATCTGT-
1 TCTGGTGGCTTCGCCACA-ATATCTGTA
49281276 TCTGGTGGC-TCTGCCACAATATCTGTA
1 TCTGGTGGCTTC-GCCACAATATCTGTA
* *
49281303 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGGCTTCGCCACAATATCT
49281327 AGCAGCCTCG
Statistics
Matches: 106, Mismatches: 8, Indels: 32
0.73 0.05 0.22
Matches are distributed among these distances:
24 1 0.01
25 3 0.03
26 39 0.37
27 59 0.56
28 4 0.04
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTTCGCCACAATATCTGTA
Found at i:49284677 original size:15 final size:15
Alignment explanation
Indices: 49284638--49284668 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
49284628 TATATTCCTA
49284638 TATAATAATAATAAT
1 TATAATAATAATAAT
49284653 TATAATAATAATAAT
1 TATAATAATAATAAT
49284668 T
1 T
49284669 TTATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TATAATAATAATAAT
Found at i:49287925 original size:20 final size:19
Alignment explanation
Indices: 49287902--49287959 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
49287892 AACAATACAC
49287902 AAATTGAAAATATATAATAA
1 AAATTGAAAATATA-AATAA
** *
49287922 AAATTGATTATATTAAAATTA
1 AAATTGAAAATA-T-AAATAA
49287943 AAATT-AAAATATAAATA
1 AAATTGAAAATATAAATA
49287960 TAATTAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
18 4 0.13
19 1 0.03
20 14 0.47
21 10 0.33
22 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTGAAAATATAAATAA
Found at i:49287967 original size:23 final size:23
Alignment explanation
Indices: 49287938--49287983 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
49287928 ATTATATTAA
* *
49287938 AATTAAAATTAAAATATAAATAT
1 AATTAAAAATAAAAAATAAATAT
*
49287961 AATTAAAAATAAAAAATATATAT
1 AATTAAAAATAAAAAATAAATAT
49287984 TTATTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATTAAAAATAAAAAATAAATAT
Found at i:49303277 original size:17 final size:17
Alignment explanation
Indices: 49303255--49303287 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49303245 TTCATATCCA
49303255 ATTAAAATATACCAATC
1 ATTAAAATATACCAATC
*
49303272 ATTAAAATATTCCAAT
1 ATTAAAATATACCAAT
49303288 AAAAAGATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
ATTAAAATATACCAATC
Found at i:49305622 original size:25 final size:27
Alignment explanation
Indices: 49305585--49305637 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
49305575 TCAAACATGC
49305585 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
49305611 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
49305637 A
1 A
49305638 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:49307163 original size:26 final size:25
Alignment explanation
Indices: 49307120--49307202 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
49307110 CATGAAATTC
49307120 TTATCATGAACATTTACCTAACCCA
1 TTATCATGAACATTTACCTAACCCA
49307145 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
*
49307171 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
49307197 TTATCA
1 TTATCA
49307203 ATTTGTACCA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
25 8 0.15
26 46 0.84
27 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:49311408 original size:25 final size:27
Alignment explanation
Indices: 49311371--49311423 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
49311361 TCAAACATGC
49311371 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
49311397 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
49311423 A
1 A
49311424 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:49312942 original size:26 final size:26
Alignment explanation
Indices: 49312903--49312986 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
49312893 CATGAAATTC
*
49312903 TTATCATGAGACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
49312929 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAACCCA
* *
49312955 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
49312981 TTATCA
1 TTATCA
49312987 ATTTGTACCA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:49315808 original size:17 final size:17
Alignment explanation
Indices: 49315782--49315814 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49315772 TCATCTTTTT
49315782 ATTGGAATATTTTAATG
1 ATTGGAATATTTTAATG
*
49315799 ATTGGTATATTTTAAT
1 ATTGGAATATTTTAAT
49315815 TGGATATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (17 bp):
ATTGGAATATTTTAATG
Found at i:49319355 original size:18 final size:18
Alignment explanation
Indices: 49319328--49319362 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49319318 TGTCAATATA
*
49319328 GGAGTGAATCCCTGATTG
1 GGAGTAAATCCCTGATTG
*
49319346 GGAGTAAATCCTTGATT
1 GGAGTAAATCCCTGATT
49319363 AGGATTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (18 bp):
GGAGTAAATCCCTGATTG
Found at i:49324533 original size:80 final size:79
Alignment explanation
Indices: 49324382--49324543 Score: 182
Period size: 80 Copynumber: 2.0 Consensus size: 79
49324372 ATACCTGGGC
* * * * * *
49324382 TAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGACATTCGTGCGAG
*
49324447 TTGTTATATCCGGGT
66 TGGTTATATCC-GGT
* * * * **
49324462 TAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGACAATT-GTTCTT
1 TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGAC-ATTCGTGCGA
49324526 GTGGTTATATCCGGT
65 GTGGTTATATCCGGT
49324541 TAA
1 TAA
49324544 ATCCTGAAGG
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 6 0.09
80 59 0.87
81 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (79 bp):
TAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGACATTCGTGCGAG
TGGTTATATCCGGT
Found at i:49324538 original size:40 final size:40
Alignment explanation
Indices: 49324382--49324543 Score: 159
Period size: 40 Copynumber: 4.1 Consensus size: 40
49324372 ATACCTGGGC
* * * * *
49324382 TAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGC
1 TAAGACCCGAAGGCAATTGTGCAAGTTG-TTATATCCGGGT
*
49324422 TAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGT
1 TAAGACCCGAAGGCAATT-GTGCAAGTTGTTATATCCGGGT
** *
49324462 TAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGT
1 TAAGACCCGAAGGCAATTGTGCAAGTTGTTATATCCGGGT
* * ** *
49324502 TAAGACCCGAAGACAATTGTTCTTGTGGTTATATCC-GGT
1 TAAGACCCGAAGGCAATTGTGCAAGTTGTTATATCCGGGT
49324541 TAA
1 TAA
49324544 ATCCTGAAGG
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 8 0.08
40 89 0.87
41 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (40 bp):
TAAGACCCGAAGGCAATTGTGCAAGTTGTTATATCCGGGT
Found at i:49339415 original size:36 final size:36
Alignment explanation
Indices: 49339331--49339470 Score: 128
Period size: 36 Copynumber: 3.8 Consensus size: 36
49339321 ATAACCACGA
* * *
49339331 AGCACAATTGCCTTCGGGACTTAACCCGGTTTGTAACT
1 AGCACAA-TGCCTTCGGGACTTAGCCCGG-ATATAACT
*
49339369 TGCACAAATGCCTTCGGG-CTTAGCCCGGATATAACT
1 AGCAC-AATGCCTTCGGGACTTAGCCCGGATATAACT
*
49339405 CGCACGAATGCCTTC-GGA-TCTAG-CCGGATATATCACT
1 AGCAC-AATGCCTTCGGGACT-TAGCCCGGATATA--ACT
*
49339442 AGCA-AAAGCCTTCGGGACTTAGCCCGGAT
1 AGCACAATGCCTTCGGGACTTAGCCCGGAT
49339471 CATTCAATAT
Statistics
Matches: 86, Mismatches: 8, Indels: 17
0.77 0.07 0.15
Matches are distributed among these distances:
35 20 0.23
36 28 0.33
37 22 0.26
38 14 0.16
39 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (36 bp):
AGCACAATGCCTTCGGGACTTAGCCCGGATATAACT
Found at i:49347373 original size:39 final size:39
Alignment explanation
Indices: 49347218--49347380 Score: 161
Period size: 39 Copynumber: 4.2 Consensus size: 39
49347208 CGGAATTTAA
* * * *
49347218 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTT-AG
** * *
49347258 CCGGAT-TTGTAACTTGCACAAATGCCTTCGGGTCTTAG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
* *
49347296 CCCGGATATAA-CAACTCGCACGAATGCCTTC-GGTCTTAG
1 -CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAG
* *
49347335 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
49347374 CCCGGAT
1 -CCGGAT
49347381 CATTCAAATG
Statistics
Matches: 100, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
38 26 0.26
39 45 0.45
40 29 0.29
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAG
Found at i:49350203 original size:40 final size:39
Alignment explanation
Indices: 49350038--49350221 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
49350028 AAATTGAATG
* * *
49350038 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
49350078 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
49350118 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
49350158 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
49350197 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
49350222 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:49350246 original size:80 final size:81
Alignment explanation
Indices: 49350078--49350266 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
49350068 GCTGGAAATT
* * * *
49350078 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
49350143 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
49350159 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
49350222 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
49350238 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
49350267 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:49356607 original size:68 final size:69
Alignment explanation
Indices: 49356535--49356731 Score: 281
Period size: 70 Copynumber: 2.8 Consensus size: 69
49356525 ACACCCTGTA
* * * * *
49356535 GTAGCTAGGTCACATGTGTGATACGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
49356598 TAAAT
65 TAAAT
*
49356603 GTAGCTAGGTCGCATGCGTGATTCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAGA
1 GTAGCTAGGTCGCATGCGTGATACAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAGA
49356668 TAAAT
65 TAAAT
*
49356673 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGA-TACAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
49356732 AGACAAATCG
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
67 3 0.03
68 23 0.19
69 1 0.01
70 55 0.47
71 36 0.31
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (69 bp):
GTAGCTAGGTCGCATGCGTGATACAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGAT
AAAT
Found at i:49356645 original size:40 final size:40
Alignment explanation
Indices: 49356601--49356717 Score: 94
Period size: 40 Copynumber: 3.1 Consensus size: 40
49356591 TGAAAGATAA
49356601 ATGTAGCTAGGTCGCATGCGTGATTCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCAAGTGAAGGACACC
* * * * *
49356641 ATGTAGAC-AAG-AG-A-GC-T-A--C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCAAGTGAAGGACACC
49356671 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATT-CAAGTGAAGGACACC
49356712 ATGTAG
1 ATGTAG
49356718 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 25
0.61 0.11 0.28
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 2 0.04
36 1 0.02
37 2 0.04
38 2 0.04
39 1 0.02
40 16 0.30
41 7 0.13
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (40 bp):
ATGTAGCTAGGTCGCATGCGTGATTCAAGTGAAGGACACC
Found at i:49356658 original size:70 final size:71
Alignment explanation
Indices: 49356569--49356731 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
49356559 GAGATGTATC
49356569 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATT-CAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49356633 AGGACA
66 AGGACA
49356639 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49356704 AGGACA
66 AGGACA
49356710 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49356732 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 57 0.62
71 35 0.38
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49360252 original size:38 final size:39
Alignment explanation
Indices: 49360167--49360315 Score: 221
Period size: 39 Copynumber: 3.9 Consensus size: 39
49360157 GTCCAGCACG
* *
49360167 TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
49360206 TAGCCTGCGGACATGAAGTCAGGATATAATTCT-GCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
49360244 TAGCCTGCGAACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
49360283 TAGCCTGTGGACCTGAAGT-CGGATATAATTCTC
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
49360316 ACGTATATAT
Statistics
Matches: 99, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
38 49 0.49
39 50 0.51
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:49360263 original size:77 final size:76
Alignment explanation
Indices: 49360167--49360314 Score: 235
Period size: 77 Copynumber: 1.9 Consensus size: 76
49360157 GTCCAGCACG
49360167 TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCAGGATA
1 TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTC-GGATA
49360232 TAATTCTGCATA
65 TAATTCTGCATA
* * * *
49360244 TAGCCTGC-GAACCTGAAGTCCGGATATAATTCTCGCTTATAGCCTGTGGACCTGAAGTCGGATA
1 TAGCCTGCAG-ACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCGGATA
49360308 TAATTCT
65 TAATTCT
49360315 CACGTATATA
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
76 13 0.20
77 53 0.80
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (76 bp):
TAGCCTGCAGACCTAAAGTCCGGATATAATTCTCGCATATAGCCTGCGGACATGAAGTCGGATAT
AATTCTGCATA
Found at i:49366798 original size:46 final size:44
Alignment explanation
Indices: 49366605--49366875 Score: 168
Period size: 46 Copynumber: 5.8 Consensus size: 44
49366595 TGGGGTCAGG
* * * *
49366605 TGCCGATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGTATATC
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CCTCGTAT-TA
* * **
49366653 TGTACCGATGCCATGTCCCAGTCATGGTCTTACACTAACACATC-TCGTA
1 TG--CCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-C-TCGTATTA
* * * * *
49366702 -GCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTAT-TA
* * *
49366747 GGCCGAAGCATATCCCAGACATGTCTTACACTAGCACTCGTATTAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTATT-A
* * * * *
49366793 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATG
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-CTCGTATTA
*
49366840 TGGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 T-GCCGATGCATGTCCCAGACATGTCTTACACTAGC
49366876 TCGCACAAGT
Statistics
Matches: 176, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 13 0.07
45 14 0.08
46 58 0.33
47 27 0.15
48 27 0.15
49 1 0.01
50 33 0.19
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTATTA
Done.