Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 165 of 318
Found at i:50999570 original size:41 final size:41
Alignment explanation
Indices: 50999513--50999597 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
50999503 GATTCAATGT
50999513 GTTAATTGGAAATTTAAAAGTAGCCTAAACCCCTACTCTAA
1 GTTAATTGGAAATTTAAAAGTAGCCTAAACCCCTACTCTAA
50999554 GTTAATTGGAAATTTAAAAGTAGCCTAAACCCCTACTCTAA
1 GTTAATTGGAAATTTAAAAGTAGCCTAAACCCCTACTCTAA
50999595 GTT
1 GTT
50999598 CTAAGTGTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (41 bp):
GTTAATTGGAAATTTAAAAGTAGCCTAAACCCCTACTCTAA
Found at i:51001475 original size:39 final size:39
Alignment explanation
Indices: 51001386--51001503 Score: 164
Period size: 39 Copynumber: 3.0 Consensus size: 39
51001376 CCGGTTATGG
* ** *
51001386 TAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
* * *
51001426 CAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
51001465 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
51001504 CTCGAACATT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 51 0.75
40 17 0.25
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
Found at i:51007638 original size:30 final size:30
Alignment explanation
Indices: 51007583--51007713 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
51007573 ATAGTGAATC
* *
51007583 CGCACACTTAGTACTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
51007612 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
51007642 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
51007670 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
51007700 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51007714 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 18 0.20
30 48 0.53
31 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:51007693 original size:58 final size:58
Alignment explanation
Indices: 51007582--51007713 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
51007572 TATAGTGAAT
* * * * * *
51007582 CCGCACACTTAGTACTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
51007641 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
51007699 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51007714 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.67
59 19 0.30
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:51015425 original size:30 final size:30
Alignment explanation
Indices: 51015370--51015500 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
51015360 ATAGTGAATC
*
51015370 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
51015399 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
51015429 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
51015457 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
51015487 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51015501 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:51015480 original size:58 final size:58
Alignment explanation
Indices: 51015369--51015500 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
51015359 TATAGTGAAT
* * * * *
51015369 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
51015428 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
51015486 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51015501 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:51020899 original size:30 final size:30
Alignment explanation
Indices: 51020844--51020974 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
51020834 ATAGTGAATC
*
51020844 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
51020873 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
51020903 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
51020931 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
51020961 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51020975 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:51020954 original size:58 final size:58
Alignment explanation
Indices: 51020843--51020974 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
51020833 TATAGTGAAT
* * * * *
51020843 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
51020902 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
51020960 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51020975 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:51025795 original size:39 final size:40
Alignment explanation
Indices: 51025680--51025823 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
51025670 TCGTTCAAAC
* * ** * **
51025680 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
* * * *
51025720 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
51025760 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
51025799 GCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGACTTAGCCCGGATATCA
51025824 CTCGAACATT
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 51 0.57
40 38 0.43
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATT
Found at i:51031857 original size:17 final size:18
Alignment explanation
Indices: 51031837--51031870 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51031827 GAAAAATTAG
51031837 TGTGA-GGACAAAAGCAT
1 TGTGAGGGACAAAAGCAT
*
51031854 TGTGAGGGGCAAAAGCA
1 TGTGAGGGACAAAAGCA
51031871 AAGTGAGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.38, C:0.12, G:0.35, T:0.15
Consensus pattern (18 bp):
TGTGAGGGACAAAAGCAT
Found at i:51038173 original size:13 final size:13
Alignment explanation
Indices: 51038155--51038179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51038145 AATCACAAAT
51038155 AAATACACATATC
1 AAATACACATATC
51038168 AAATACACATAT
1 AAATACACATAT
51038180 TTTTTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:51044257 original size:43 final size:43
Alignment explanation
Indices: 51044209--51044468 Score: 380
Period size: 43 Copynumber: 6.1 Consensus size: 43
51044199 TAAATCCCGT
* *
51044209 AGGCTTCGTGCCAGTGATGTATATTCGGGCCTTCCTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
* *
51044252 AGGCTTCGTGCCTGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
*
51044295 AGGCTTCGTGCTGGTGATGTATATTCGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
* * *
51044338 AGGCTTCATGTCGGTGATGTATATTCGGGCCTTCGTGCCTAAC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
* *
51044381 A-GCTTCGTGCTGGTGATGTGTATTC-GGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
** * *
51044422 AGGCTTCGTGCAAGTGATGTGTATTCGAGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
51044465 AGGC
1 AGGC
51044469 GTAATGCCAG
Statistics
Matches: 197, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
41 16 0.08
42 42 0.21
43 139 0.71
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.32
Consensus pattern (43 bp):
AGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAGC
Found at i:51044441 original size:127 final size:129
Alignment explanation
Indices: 51044222--51044468 Score: 410
Period size: 127 Copynumber: 1.9 Consensus size: 129
51044212 CTTCGTGCCA
*
51044222 GTGATGTATATTCGGGCCTTCCTGCCTAGCAGGCTTCGTGCCTGTGATGTGTATTCGGGCCTTCG
1 GTGATGTATATTCGGGCCTTCCTGCCTAACAGGCTTCGTGCCTGTGATGTGTATTCGGGCCTTCG
** *
51044287 TGCCTAGCAGGCTTCGTGCTGGTGATGTATATTCGGGCCTTCGTGCCTAGCAGGCTTCATGTCG
66 TGCCTAGCAGGCTTCGTGCAAGTGATGTATATTCGAGCCTTCGTGCCTAGCAGGCTTCATGTCG
*
51044351 GTGATGTATATTCGGGCCTTCGTGCCTAACA-GCTTCGTG-CTGGTGATGTGTATTC-GGCCTTC
1 GTGATGTATATTCGGGCCTTCCTGCCTAACAGGCTTCGTGCCT-GTGATGTGTATTCGGGCCTTC
*
51044413 GTGCCTAGCAGGCTTCGTGCAAGTGATGTGTATTCGAGCCTTCGTGCCTAGCAGGC
65 GTGCCTAGCAGGCTTCGTGCAAGTGATGTATATTCGAGCCTTCGTGCCTAGCAGGC
51044469 GTAATGCCAG
Statistics
Matches: 111, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
127 61 0.55
128 21 0.19
129 29 0.26
ACGTcount: A:0.13, C:0.24, G:0.31, T:0.32
Consensus pattern (129 bp):
GTGATGTATATTCGGGCCTTCCTGCCTAACAGGCTTCGTGCCTGTGATGTGTATTCGGGCCTTCG
TGCCTAGCAGGCTTCGTGCAAGTGATGTATATTCGAGCCTTCGTGCCTAGCAGGCTTCATGTCG
Found at i:51051550 original size:24 final size:24
Alignment explanation
Indices: 51051518--51051604 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
51051508 AATCTCAAAT
51051518 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
51051542 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
51051566 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
51051590 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
51051605 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:51051570 original size:48 final size:48
Alignment explanation
Indices: 51051518--51051626 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
51051508 AATCTCAAAT
** *
51051518 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
51051566 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
51051614 GCACTATGTGTGC
1 GCACTATGTGTGC
51051627 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:51051617 original size:24 final size:24
Alignment explanation
Indices: 51051518--51051626 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
51051508 AATCTCAAAT
*
51051518 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
51051542 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
51051566 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
51051590 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
51051614 GCACTATGTGTGC
1 GCACTATGTGTGC
51051627 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:51053012 original size:43 final size:43
Alignment explanation
Indices: 51052964--51053095 Score: 176
Period size: 43 Copynumber: 3.1 Consensus size: 43
51052954 GGGCGTTACA
*
51052964 AGGCTTCGTGCCGATGATGTATATTTGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTTGGGCCTTCGTGCCTAGC
* * *
51053007 AGGCTTCGTGTCGGTGATGTATA-TTCGGCCTTCGTGCCTAAC
1 AGGCTTCGTGCCGGTGATGTATATTTGGGCCTTCGTGCCTAGC
* * ** *
51053049 AGCCTTCATGCCGGTGATGCGTATTCGGGCCTTCGTGCCTAGC
1 AGGCTTCGTGCCGGTGATGTATATTTGGGCCTTCGTGCCTAGC
51053092 AGGC
1 AGGC
51053096 GTAATGCTGG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
42 35 0.47
43 40 0.53
ACGTcount: A:0.14, C:0.26, G:0.30, T:0.30
Consensus pattern (43 bp):
AGGCTTCGTGCCGGTGATGTATATTTGGGCCTTCGTGCCTAGC
Found at i:51053064 original size:42 final size:42
Alignment explanation
Indices: 51052967--51053089 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 42
51052957 CGTTACAAGG
* * * *
51052967 CTTCGTGCCGATGATGTATATTTGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTATA-TTCGGCCTTCGTGCCTAACAGC
*
51053010 CTTCGTGTCGGTGATGTATATTCGGCCTTCGTGCCTAACAGC
1 CTTCGTGCCGGTGATGTATATTCGGCCTTCGTGCCTAACAGC
* **
51053052 CTTCATGCCGGTGATGCGTATTCGGGCCTTCGTGCCTA
1 CTTCGTGCCGGTGATGTATATTC-GGCCTTCGTGCCTA
51053090 GCAGGCGTAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
42 38 0.54
43 32 0.46
ACGTcount: A:0.13, C:0.26, G:0.28, T:0.33
Consensus pattern (42 bp):
CTTCGTGCCGGTGATGTATATTCGGCCTTCGTGCCTAACAGC
Found at i:51055300 original size:294 final size:294
Alignment explanation
Indices: 51054764--51055651 Score: 1713
Period size: 294 Copynumber: 3.0 Consensus size: 294
51054754 ACAGTCGCTT
*
51054764 AAAAATTCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
1 AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
51054829 TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
66 TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
51054894 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
131 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
51054959 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
196 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
51055024 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
261 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
51055058 AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
1 AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
51055123 TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
66 TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
51055188 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
131 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
51055253 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
196 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
51055318 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
261 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
51055352 AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
1 AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
*
51055417 TAATATATCTATCTACTAAATTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
66 TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
* * **
51055482 GTTAAAATCTCCCCTATTTTTGGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
131 GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
51055547 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
196 TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
51055612 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
261 ATACATATAAATTTTGAGTCCAAATTATTTTTAC
*
51055646 ACAAAT
1 AAAAAT
51055652 TATGGTGATT
Statistics
Matches: 587, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 587 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (294 bp):
AAAAATCCATATCTCGAGTTCCAAAACTCGAAATTAAGATCTGTAAATTTTTCCTGAAACTAGAC
TAATATATCTATCTACTAAGTTTTTTTCTACAATTTTTGGTTGGGCCAATTAGTATAGTTTATTA
GTTAAAGTCTCCCCTGTTTTAAGGTTAGGCTATTCTGACCCCTGTGCACTATGAATCAAATTTCT
TTCTGTACAGAAATCCAATGACTATGTAGTTTGTTTCACTTAAAAATAGACTCAATAAGGAATCC
ATACATATAAATTTTGAGTCCAAATTATTTTTAC
Found at i:51056622 original size:47 final size:47
Alignment explanation
Indices: 51056561--51056683 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
51056551 ATCCATAAGT
* *
51056561 GAACTCGGGCTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
* *
51056608 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
*
51056655 GAACTCAGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
51056684 CGTTCGCATC
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAA
Found at i:51062436 original size:13 final size:13
Alignment explanation
Indices: 51062418--51062442 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51062408 AATCACAAAT
51062418 AAATACACATATC
1 AAATACACATATC
51062431 AAATACACATAT
1 AAATACACATAT
51062443 TTTTTTTCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:51063789 original size:14 final size:15
Alignment explanation
Indices: 51063739--51063789 Score: 61
Period size: 14 Copynumber: 3.4 Consensus size: 15
51063729 ACTCATAACT
51063739 TATATTATATACATA
1 TATATTATATACATA
51063754 TA-ATTATATACAT-
1 TATATTATATACATA
*
51063767 TTTATTATTATAACATA
1 TATATTA-TAT-ACATA
51063784 TATATT
1 TATATT
51063790 GTACATATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 15 0.50
15 5 0.17
16 4 0.13
17 5 0.17
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATTATATACATA
Found at i:51066399 original size:26 final size:27
Alignment explanation
Indices: 51066339--51066407 Score: 97
Period size: 26 Copynumber: 2.6 Consensus size: 27
51066329 CCCCGGTTTA
*
51066339 TAAAATTACCCAAATATTCTCGATTTG
1 TAAAATTACCGAAATATTCTCGATTTG
*
51066366 TAAAATTATCGAAATA-TCGTCGA-TTG
1 TAAAATTACCGAAATATTC-TCGATTTG
51066392 TAAAATTACCGAAATA
1 TAAAATTACCGAAATA
51066408 CCCCTTTAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.53
27 18 0.47
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACCGAAATATTCTCGATTTG
Found at i:51066432 original size:27 final size:27
Alignment explanation
Indices: 51066395--51066626 Score: 286
Period size: 27 Copynumber: 8.6 Consensus size: 27
51066385 TCGATTGTAA
* *
51066395 AATTACCGAAATACCCCTTTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
51066422 AATTACTGAAATACCCCTATAAGTTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
51066449 AATTA-TCGAAATACCCCTACAGGGCAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* *
51066476 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
51066503 AATTACTGAAATACCCCTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
51066530 AATTACTGAAATACCTCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
51066557 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
51066584 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
51066611 AACTACCGAGATACCC
1 AATTACTGAAATACCC
51066627 TCGTGGGGTA
Statistics
Matches: 176, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 174 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:51066644 original size:27 final size:27
Alignment explanation
Indices: 51066365--51066644 Score: 130
Period size: 27 Copynumber: 10.4 Consensus size: 27
51066355 TTCTCGATTT
* * * **
51066365 GTAAAATTATCGAAATATCGTCG-ATT
1 GTAAAATTACCGAAATACCCTCGTAGG
*
51066391 GTAAAATTACCGAAATACCC-CTTTAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * * *
51066418 GTAGAATTACTGAAATACCC-CTATAAG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * *
51066445 TTAGAATTATCGAAATACCC-C-TACAGG
1 GTAAAATTACCGAAATACCCTCGT--AGG
* * * *
51066472 GCAGAATTACTGAAATACCC-CTGTAAG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * *
51066499 GTAGAATTACTGAAATACCC-CTATAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* * * *
51066526 ATAGAATTACTGAAATA-CCTCTATAGG
1 GTAAAATTACCGAAATACCCTC-GTAGG
* *
51066553 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAAAATTACCGAAATACCCTCGTAGG
*
51066580 GTAGAAA-TACTGAAATACCC-CTGTAGG
1 GTA-AAATTACCGAAATACCCTC-GTAGG
* * * *
51066607 GTAGAACTACCGAGATACCCTCGTGGG
1 GTAAAATTACCGAAATACCCTCGTAGG
51066634 GTAAAATTACC
1 GTAAAATTACC
51066645 ATTTTGCCCC
Statistics
Matches: 206, Mismatches: 36, Indels: 23
0.78 0.14 0.09
Matches are distributed among these distances:
25 2 0.01
26 21 0.10
27 176 0.85
28 6 0.03
29 1 0.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGTAGG
Found at i:51066958 original size:20 final size:20
Alignment explanation
Indices: 51066935--51066975 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
51066925 TGTGTGCCGT
*
51066935 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTACCGA
51066955 TATTGTGGGCTTCGTACCGA
1 TATTGTGGGCTTCGTACCGA
51066975 T
1 T
51066976 TATAGACCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.29, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCGTACCGA
Found at i:51067024 original size:22 final size:22
Alignment explanation
Indices: 51066992--51067050 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
51066982 CCCGTTATCG
*
51066992 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
51067014 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
51067036 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
51067051 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:51067238 original size:27 final size:26
Alignment explanation
Indices: 51067208--51067315 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
51067198 ATTCTGTTAA
* *
51067208 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
51067235 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
* *
51067262 GTGGCTCTACAACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
51067289 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
51067315 G
1 G
51067316 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.20
27 49 0.70
28 7 0.10
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:51067442 original size:6 final size:6
Alignment explanation
Indices: 51067433--51067582 Score: 85
Period size: 6 Copynumber: 24.3 Consensus size: 6
51067423 TTGCATTCAC
* * * *
51067433 ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG ACTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
51067483 ATTTTG ATTCTG ATTCTG ATTCTG -TCATCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * * * *
51067532 ATTCAG -TCAGCTG ATTCTG ATTCTA ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
51067581 AT
1 AT
51067583 AATGTTTCTT
Statistics
Matches: 109, Mismatches: 21, Indels: 28
0.69 0.13 0.18
Matches are distributed among these distances:
5 5 0.05
6 89 0.82
7 10 0.09
8 5 0.05
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:51067461 original size:25 final size:25
Alignment explanation
Indices: 51067433--51067531 Score: 117
Period size: 25 Copynumber: 3.7 Consensus size: 25
51067423 TTGCATTCAC
*
51067433 ATTCTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
51067458 ATTCTGATTCTGACTCTGTCACCTAA
1 ATTCTGATTCTGATTCTGTCACCT-A
*
51067484 TTTTGATTCTGATTCTGATTCTGTCATCTA
1 -----ATTCTGATTCTGATTCTGTCACCTA
51067514 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
51067532 ATTCAGTCAG
Statistics
Matches: 64, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
25 40 0.62
26 1 0.02
30 1 0.02
31 22 0.34
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:51067493 original size:31 final size:31
Alignment explanation
Indices: 51067433--51067561 Score: 153
Period size: 31 Copynumber: 4.4 Consensus size: 31
51067423 TTGCATTCAC
*
51067433 ATTCTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
51067464 ATTCTGA--C----TCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
51067489 ATTCTGATTCTGATTCTGTCATCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
* * *
51067520 ATTCTGATTCTGATTCAGTCAGCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTG
*
51067551 ATTCTAATTCT
1 ATTCTGATTCT
51067562 CATTTTGATT
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
25 22 0.26
27 1 0.01
29 1 0.01
31 60 0.71
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTG
Found at i:51072697 original size:37 final size:37
Alignment explanation
Indices: 51072644--51072734 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
51072634 TATAAAAGAA
51072644 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
51072681 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
51072718 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
51072735 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:51072868 original size:40 final size:41
Alignment explanation
Indices: 51072824--51072959 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 41
51072814 CATATATTTT
51072824 ACATT-AGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
* * *
51072864 ACATTCA-CCACATCGGCCATTAGGC-C-T-TACATACACTTTC
1 ACATTCAGCCA-TTAGGCC-TTA-TCACATATACATACACTTTC
51072904 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATT-----CA---GCCATTAGGCCTTATCACATATACATACACTTTC
51072953 ACATTCA
1 ACATTCA
51072960 TCGCATTGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 28
0.69 0.06 0.26
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 4 0.05
43 1 0.01
44 2 0.03
45 2 0.03
46 1 0.01
47 4 0.05
48 6 0.08
49 21 0.28
ACGTcount: A:0.31, C:0.32, G:0.08, T:0.29
Consensus pattern (41 bp):
ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
Found at i:51072885 original size:49 final size:49
Alignment explanation
Indices: 51072830--51072986 Score: 215
Period size: 49 Copynumber: 3.4 Consensus size: 49
51072820 TTTTACATTA
51072830 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
51072879 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* * *
51072919 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
51072968 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
51072987 CACATATGTA
Statistics
Matches: 95, Mismatches: 4, Indels: 18
0.81 0.03 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 52 0.55
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:51076400 original size:29 final size:29
Alignment explanation
Indices: 51076364--51076556 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
51076354 TGTTGAAAAA
*
51076364 CTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
51076393 CTCGCACACGTAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
51076422 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
51076451 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
51076480 CTCGCACACATAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
*
51076509 CTCGCACACATAGTGCCTCGATTACTGAT
1 CTCGCACACATAGTGCCTCAATTACTGAT
51076538 CTCGCACACATAGTGCCTC
1 CTCGCACACATAGTGCCTC
51076557 TATTCATTCG
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CTCGCACACATAGTGCCTCAATTACTGAT
Found at i:51076779 original size:40 final size:40
Alignment explanation
Indices: 51076730--51076854 Score: 205
Period size: 40 Copynumber: 3.1 Consensus size: 40
51076720 CGAATACACG
* * * * *
51076730 TCACTAGCATGATTGCTCTTCGGGACCTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
51076770 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
51076810 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
51076850 TCACT
1 TCACT
51076855 CTCAATTCTC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGAACTTAGTCCGGATATA
Found at i:51078727 original size:37 final size:37
Alignment explanation
Indices: 51078674--51078764 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
51078664 TATAAAAGAA
51078674 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
51078711 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
51078748 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
51078765 TTCCAAGTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:51078898 original size:40 final size:41
Alignment explanation
Indices: 51078854--51078989 Score: 111
Period size: 40 Copynumber: 3.2 Consensus size: 41
51078844 CATATATTTT
51078854 ACATT-AGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
* * *
51078894 ACATTCA-CCACATCGGCCATTAGGC-C-T-TACATACACTTTC
1 ACATTCAGCCA-TTAGGCC-TTA-TCACATATACATACACTTTC
51078934 ACATTCACCACATCGGCCATTAGGCCTTATCACATATACATACACTTTC
1 ACATT-----CA---GCCATTAGGCCTTATCACATATACATACACTTTC
51078983 ACATTCA
1 ACATTCA
51078990 TCGTATTGGC
Statistics
Matches: 74, Mismatches: 6, Indels: 28
0.69 0.06 0.26
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 4 0.05
43 1 0.01
44 2 0.03
45 2 0.03
46 1 0.01
47 4 0.05
48 6 0.08
49 21 0.28
ACGTcount: A:0.31, C:0.32, G:0.08, T:0.29
Consensus pattern (41 bp):
ACATTCAGCCATTAGGCCTTATCACATATACATACACTTTC
Found at i:51078915 original size:49 final size:49
Alignment explanation
Indices: 51078860--51079016 Score: 206
Period size: 49 Copynumber: 3.4 Consensus size: 49
51078850 TTTTACATTA
51078860 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
51078909 GCCATTAGG------C-C-T-TACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
* ** *
51078949 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCGTATTG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
*
51078998 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
51079017 CACATATGTA
Statistics
Matches: 94, Mismatches: 5, Indels: 18
0.80 0.04 0.15
Matches are distributed among these distances:
40 37 0.39
41 1 0.01
42 1 0.01
43 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 51 0.54
ACGTcount: A:0.28, C:0.32, G:0.10, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
Found at i:51084347 original size:48 final size:46
Alignment explanation
Indices: 51084280--51084432 Score: 137
Period size: 46 Copynumber: 3.3 Consensus size: 46
51084270 TACTCATTTG
** * * *
51084280 GGTTAAACCTACACAAATAATGAATCATAGTGTCTGGTCACCC-GTAA
1 GGTTAAACCTACATGAATAA-G-ATAATAGTGCCTAGTCACCCAGTAA
* *
51084327 GGATTGAACCTACATGAATAAGATAATAGTGCCTAGTCACCCATTAA
1 GG-TTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCAGTAA
** * * * * *
51084374 GGTTAAACCTACATGAACCAGAGAATAGTGCTTAGTCACCTACTAG
1 GGTTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCAGTAA
*
51084420 GGTTGAACCTACA
1 GGTTAAACCTACA
51084433 CAACAAATAG
Statistics
Matches: 88, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
46 65 0.74
47 8 0.09
48 15 0.17
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (46 bp):
GGTTAAACCTACATGAATAAGATAATAGTGCCTAGTCACCCAGTAA
Found at i:51090461 original size:67 final size:67
Alignment explanation
Indices: 51090345--51090522 Score: 239
Period size: 67 Copynumber: 2.7 Consensus size: 67
51090335 TATTGTCTTG
* * * * *
51090345 GTAGATTCTCTATGTTGTCATAGTTGAGCTATGGCCTTACACATTATACCCCATGTTTAATGTCC
1 GTAGACTCTCTATGTTGCCATAGTTGAGCTATGGTCTTACACATCATACCCAATGTTTAATGTCC
51090410 TA
66 TA
* * *
51090412 GTGGACTCTCTATGTTACCATAGTCGAGCTATGGTCTTACACATCATACCCAATGTTTAATGTCC
1 GTAGACTCTCTATGTTGCCATAGTTGAGCTATGGTCTTACACATCATACCCAATGTTTAATGTCC
*
51090477 TG
66 TA
* * * *
51090479 GTAGATTCTTTATGTTGCCATAATTGAGTTATGGTCTTACACAT
1 GTAGACTCTCTATGTTGCCATAGTTGAGCTATGGTCTTACACAT
51090523 TAAACCTCAT
Statistics
Matches: 95, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
67 95 1.00
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (67 bp):
GTAGACTCTCTATGTTGCCATAGTTGAGCTATGGTCTTACACATCATACCCAATGTTTAATGTCC
TA
Found at i:51091245 original size:16 final size:16
Alignment explanation
Indices: 51091224--51091267 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
51091214 GGTTCACTAG
*
51091224 AATGGAATAGGGATGT
1 AATGGAATAGAGATGT
*
51091240 AATGGAATAGAGTTGT
1 AATGGAATAGAGATGT
*
51091256 AATGAAATAGAG
1 AATGGAATAGAG
51091268 CTATAATCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (16 bp):
AATGGAATAGAGATGT
Found at i:51097094 original size:40 final size:40
Alignment explanation
Indices: 51097035--51097242 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51097025 CAATTGAATG
* * * *
51097035 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51097075 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51097115 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51097155 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51097195 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51097235 ATATCCGG
1 ATATCCGG
51097243 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51097173 original size:80 final size:80
Alignment explanation
Indices: 51097036--51097242 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51097026 AATTGAATGA
* * ** * * *
51097036 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51097101 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51097114 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51097179 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51097196 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51097243 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51105235 original size:40 final size:40
Alignment explanation
Indices: 51105176--51105383 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51105166 CAATTGAATG
* * * *
51105176 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51105216 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51105256 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51105296 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51105336 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51105376 ATATCCGG
1 ATATCCGG
51105384 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51105314 original size:80 final size:80
Alignment explanation
Indices: 51105177--51105383 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51105167 AATTGAATGA
* * ** * * *
51105177 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51105242 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51105255 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51105320 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51105337 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51105384 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51109708 original size:40 final size:40
Alignment explanation
Indices: 51109649--51109856 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
51109639 CAATTGAATG
* * * *
51109649 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
51109689 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51109729 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
51109769 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
51109809 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
51109849 ATATCCGG
1 ATATCCGG
51109857 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:51109787 original size:80 final size:80
Alignment explanation
Indices: 51109650--51109856 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
51109640 AATTGAATGA
* * ** * * *
51109650 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
51109715 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
51109728 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
51109793 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
51109810 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
51109857 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:51114800 original size:45 final size:45
Alignment explanation
Indices: 51114736--51114827 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
51114726 ATGGTGACTT
51114736 CGAATCAAAGCGCATGAGAGAGGAAATCGATGAAGAAACCAAAGA
1 CGAATCAAAGCGCATGAGAGAGGAAATCGATGAAGAAACCAAAGA
51114781 CGAATCAAAGCGCATGAGAGAGGAAATCGATGAAGAAACCAAAGA
1 CGAATCAAAGCGCATGAGAGAGGAAATCGATGAAGAAACCAAAGA
51114826 CG
1 CG
51114828 TTTTCAAAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.48, C:0.16, G:0.27, T:0.09
Consensus pattern (45 bp):
CGAATCAAAGCGCATGAGAGAGGAAATCGATGAAGAAACCAAAGA
Found at i:51119930 original size:2 final size:2
Alignment explanation
Indices: 51119923--51119964 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
51119913 TTACAATTTC
51119923 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A
51119965 CTTTCACATA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51120491 original size:45 final size:44
Alignment explanation
Indices: 51120412--51120612 Score: 230
Period size: 45 Copynumber: 4.5 Consensus size: 44
51120402 TGCTAAATAG
* * *
51120412 GGTCTTACACGAATCA-A-ATA-CGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAACACATATATCGATGCCAACGTCCCAGACAT
* *
51120453 GGTCTTACACGTAACTACATATATCGATGCCAACGTCCCAGACTT
1 GGTCTTACACGAAAC-ACATATATCGATGCCAACGTCCCAGACAT
* **
51120498 GGTCTTACACGAAAACACAAATATCGATGCCAACGTCCCAGATGT
1 GGTCTTACACG-AAACACATATATCGATGCCAACGTCCCAGACAT
* * *
51120543 GGTTTTACACAAAAACACATATATCAATGCCAACGTCCCAGA-AGT
1 GGTCTTACAC-GAAACACATATATCGATGCCAACGTCCCAGACA-T
51120588 GGTCTTACACGAAAACACATATATC
1 GGTCTTACACG-AAACACATATATC
51120613 AAAATCCTAC
Statistics
Matches: 136, Mismatches: 16, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
41 13 0.10
42 1 0.01
43 1 0.01
44 3 0.02
45 115 0.85
46 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (44 bp):
GGTCTTACACGAAACACATATATCGATGCCAACGTCCCAGACAT
Found at i:51120613 original size:45 final size:45
Alignment explanation
Indices: 51120442--51120614 Score: 233
Period size: 45 Copynumber: 3.8 Consensus size: 45
51120432 CGATGCCGAT
* *
51120442 GTCCCAGACA-TGGTCTTACACG-TAACTACATATATCGATGCCAAC
1 GTCCCAGA-AGTGGTCTTACACGAAAAC-ACATATATCAATGCCAAC
** * *
51120487 GTCCCAGACTTGGTCTTACACGAAAACACAAATATCGATGCCAAC
1 GTCCCAGAAGTGGTCTTACACGAAAACACATATATCAATGCCAAC
* * *
51120532 GTCCCAGATGTGGTTTTACACAAAAACACATATATCAATGCCAAC
1 GTCCCAGAAGTGGTCTTACACGAAAACACATATATCAATGCCAAC
51120577 GTCCCAGAAGTGGTCTTACACGAAAACACATATATCAA
1 GTCCCAGAAGTGGTCTTACACGAAAACACATATATCAA
51120615 AATCCTACGA
Statistics
Matches: 114, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 111 0.97
46 3 0.03
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.23
Consensus pattern (45 bp):
GTCCCAGAAGTGGTCTTACACGAAAACACATATATCAATGCCAAC
Found at i:51124983 original size:40 final size:41
Alignment explanation
Indices: 51124900--51125008 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 41
51124890 TCGAATGATG
*
51124900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
* * **
51124940 TCCGGACTAAGAT-CCGAAGGCATTTGTG-TGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA
*
51124980 TCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC
51125009 GAGCTATTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
39 1 0.02
40 50 0.86
41 7 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:51129930 original size:20 final size:21
Alignment explanation
Indices: 51129893--51129931 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
51129883 GACTAAACAG
**
51129893 AAAACTTTAGAATTTTTTTAC
1 AAAACTTTAGAAAATTTTTAC
51129914 AAAAC-TTAGAAAATTTTT
1 AAAACTTTAGAAAATTTTT
51129932 CACTAAACAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (21 bp):
AAAACTTTAGAAAATTTTTAC
Found at i:51147447 original size:16 final size:18
Alignment explanation
Indices: 51147422--51147456 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
51147412 TTAAGTTTAC
51147422 TTTTTATTTAAAAT-TAA
1 TTTTTATTTAAAATATAA
51147439 TTTTT-TTTAAAATATAA
1 TTTTTATTTAAAATATAA
51147456 T
1 T
51147457 ACAAAATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTTATTTAAAATATAA
Found at i:51165402 original size:40 final size:40
Alignment explanation
Indices: 51165306--51165484 Score: 187
Period size: 40 Copynumber: 4.5 Consensus size: 40
51165296 CGAATGGTGT
* * * * *
51165306 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
51165347 CCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
51165387 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
51165427 CCGGGTTAATTCCCGAGGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
51165467 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
51165485 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 25, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
40 89 0.79
41 24 0.21
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:51165442 original size:80 final size:80
Alignment explanation
Indices: 51165306--51165524 Score: 226
Period size: 80 Copynumber: 2.7 Consensus size: 80
51165296 CGAATGGTGT
* * * * * * *
51165306 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGGTTAATTCCCGAAGGCAATT
* *
51165371 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * *
51165387 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAATTCCCGAGGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAATTCCCGAAGGCAATTG
* *
51165452 TGCGAATCACTATAA
66 TGCGAATCACCAAAA
* * * * * *
51165467 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCC-GGTTAAATT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTT-AATTCCCGAAGG
51165525 TACGTGATTC
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
79 10 0.09
80 80 0.70
81 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGGTTAATTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:51173772 original size:27 final size:27
Alignment explanation
Indices: 51173741--51173796 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
51173731 TAGAATACTT
51173741 TGGTTTACAAAATTACCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
** *
51173768 TGGTTTGTAAAATTATCAAAATACCCC
1 TGGTTTACAAAATTACCAAAATACCCC
51173795 TG
1 TG
51173797 TAAGGTAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
TGGTTTACAAAATTACCAAAATACCCC
Found at i:51173816 original size:27 final size:27
Alignment explanation
Indices: 51173751--51173973 Score: 234
Period size: 27 Copynumber: 8.3 Consensus size: 27
51173741 TGGTTTACAA
* ** *
51173751 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* * *
51173778 AATTATCAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51173805 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
51173832 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51173859 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
51173886 AAATT-CCTAAATACCCCTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAG
* * *
51173913 AATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
51173940 AATTACCGAGATAACCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
51173967 AATTACC
1 AATTACC
51173974 ATTTTACCCC
Statistics
Matches: 165, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.04
27 155 0.94
28 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:51173886 original size:81 final size:81
Alignment explanation
Indices: 51173751--51173969 Score: 271
Period size: 81 Copynumber: 2.7 Consensus size: 81
51173741 TGGTTTACAA
* ** * * * * *
51173751 AATTACCAAAATACCCCTGGT-TTGTAAAATTATCAAAATACCCCTGTAAGGTAGAAATACCGAA
1 AATTACTAAAATACCCCT-GTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAA
51173815 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * *
51173832 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATTCCTAAA
1 AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
51173897 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
51173913 AATTACTGAAATACTCCTGTAAGGTAGAATTACCGAGATAACCTTGTGGGGTA-AAAT
1 AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
51173970 TACCATTTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
80 6 0.05
81 115 0.95
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (81 bp):
AATTACTAAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAGGGTAG
Found at i:51174263 original size:27 final size:26
Alignment explanation
Indices: 51174219--51174270 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
51174209 CTCGCTGCAA
*
51174219 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
51174246 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51174271 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51174324 original size:27 final size:26
Alignment explanation
Indices: 51174294--51174345 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
51174284 CTCACTGCAA
*
51174294 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
*
51174321 TCTGGTGACTTCGCCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
51174346 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:51174330 original size:75 final size:75
Alignment explanation
Indices: 51174207--51174358 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
51174197 CATTCTGGCA
* *
51174207 GCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGG
1 GCCTCACTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGCCACAATATCTGG
51174272 CAGCCTCGCT
66 CAGCCTCGCT
51174282 GCCTCACTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGCCACAATATCTGG
1 GCCTCACTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGCCACAATATCTGG
51174347 CAGCCTCGCT
66 CAGCCTCGCT
51174357 GC
1 GC
51174359 AATCTGGTGG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.28
Consensus pattern (75 bp):
GCCTCACTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGCCACAATATCTGG
CAGCCTCGCT
Found at i:51174442 original size:27 final size:26
Alignment explanation
Indices: 51174390--51174449 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51174380 ATATATATAT
*
51174390 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
51174416 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
51174443 ATATCTG
1 ATATCTG
51174450 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:51177664 original size:47 final size:47
Alignment explanation
Indices: 51177468--51177786 Score: 190
Period size: 47 Copynumber: 6.8 Consensus size: 47
51177458 ATAGGTTGCC
* * * * * * *
51177468 GATGCCATGTCCCAGACATGGTCTTGCATTGGCTCTCATATGTGCGTGTT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCACTCATCTAT--GTGCT
* * *
51177518 GATGCATGTCCCAGACAT-GTCTTACACTAGCAC-AACTCT-T-AGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCA-TCTATGTGCT
* * * ** ** * *
51177562 GATGCGTGTTCCAGACA-CGTCTTACACGGGCTGTC-TCTATCGAGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTAT-G-TGCT
* *
51177609 GATGCATGTCCCAGACA-CGTCTTACTCTAGCACTCATCTATGTGCT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTATGTGCT
* * *
51177655 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATG-GCT
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCACTCAT-CTATGTGCT
* * * * *
51177703 GAAGCATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCT-GGATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTATG-TGCT
* * *
51177749 GATGCCACGTCTCAGACATGGTCTTACACTGGCACTCA
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCACTCA
51177787 AATTACCCAA
Statistics
Matches: 210, Mismatches: 44, Indels: 32
0.73 0.15 0.11
Matches are distributed among these distances:
43 3 0.01
44 29 0.14
45 1 0.00
46 27 0.13
47 73 0.35
48 55 0.26
49 18 0.09
50 4 0.02
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCACTCATCTATGTGCT
Found at i:51177716 original size:94 final size:92
Alignment explanation
Indices: 51177464--51177786 Score: 316
Period size: 94 Copynumber: 3.5 Consensus size: 92
51177454 TGGGATAGGT
* * * *
51177464 TGCCGATGCCATGTCCCAGACATGGTCTTGCATTGGCTCTCATATGTGCGTGTTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATAT--G-GCTGATGCATGTCC
*
51177529 CAGACATGTCTTACACTAGCAC-AACTCTT-
63 CAGACATGTCTTACACTAGCACTCA-TCTTG
* * * * * *
51177558 AGCCGATG-CGTGTTCCAGACA-CGTCTTACACGGGCTGTCTC-TATCGA-GGCCGATGCATGTC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAT--ATGGCTGATGCATGTC
* *
51177619 CCAGACACGTCTTACTCTAGCACTCATCTATG
62 CCAGACATGTCTTACACTAGCACTCATCT-TG
* *
51177651 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCTGAAGCATGTCCCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATATGGCTGATGCATGTCCCA
* * *
51177716 GACATGTCTTACACTAGCCCTCGTCTGG
65 GACATGTCTTACACTAGCACTCATCTTG
* * *
51177744 ATGCCGATGCCACGTCTCAGACATGGTCTTACACTGGCACTCA
1 -TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
51177787 AATTACCCAA
Statistics
Matches: 186, Mismatches: 30, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
91 35 0.19
92 13 0.07
93 26 0.14
94 98 0.53
95 14 0.08
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.28
Consensus pattern (92 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGGCTGATGCATGTCCCAG
ACATGTCTTACACTAGCACTCATCTTG
Found at i:51180152 original size:18 final size:18
Alignment explanation
Indices: 51180118--51180155 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
51180108 GTTATCAAAT
*
51180118 CATCATCAACTTTTTGAG
1 CATCATCAAATTTTTGAG
51180136 CATCA-CAAATTTGTTGAG
1 CATCATCAAATTT-TTGAG
51180154 CA
1 CA
51180156 AATAAAGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (18 bp):
CATCATCAAATTTTTGAG
Found at i:51182714 original size:78 final size:78
Alignment explanation
Indices: 51182580--51182730 Score: 232
Period size: 78 Copynumber: 1.9 Consensus size: 78
51182570 ATATATACGT
51182580 GAGAATTATATCCGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCC
51182645 GCAAGCTATATGG
66 GCAAGCTATATGG
* * * * *
51182658 GAGATTTATATCTGGACTTCATGTCCGCAGGT-TATATGCGAGAATTATATCCGGACTTTAGGTC
1 GAGAATTATATCCGGACTTCAGGTCCGCA-GTCTATAAGCGAGAATTATATCCGGACTTCAGGTC
*
51182722 CGCAGGCTA
65 CGCAAGCTA
51182731 CGTGCTGGAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
78 64 0.97
79 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (78 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCC
GCAAGCTATATGG
Found at i:51182727 original size:39 final size:39
Alignment explanation
Indices: 51182580--51182727 Score: 208
Period size: 39 Copynumber: 3.8 Consensus size: 39
51182570 ATATATACGT
*
51182580 GAGAATTATATCCGGACTTCAGGTCCGCA-GTCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGT-TATATGC
* * *
51182619 GAGAATTATATCCGGACTTCAGGTCCGCAAGCTATATGG
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGTTATATGC
* * *
51182658 GAGATTTATATCTGGACTTCATGTCCGCAGGTTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGTTATATGC
*
51182697 GAGAATTATATCCGGACTTTAGGTCCGCAGG
1 GAGAATTATATCCGGACTTCAGGTCCGCAGG
51182728 CTACGTGCTG
Statistics
Matches: 95, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
39 94 0.99
40 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGTTATATGC
Found at i:51182746 original size:78 final size:77
Alignment explanation
Indices: 51182584--51182749 Score: 210
Period size: 78 Copynumber: 2.1 Consensus size: 77
51182574 ATACGTGAGA
*
51182584 ATTATATCCGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAA
1 ATTATATCTGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAA
* *
51182649 GCTATATGGGAG
66 GCTACATGGGAC
* * *
51182661 ATTTATATCTGGACTTCATGTCCGCAGGT-TATATGCGAGAATTATATCCGGACTTTAGGTCCGC
1 A-TTATATCTGGACTTCAGGTCCGCA-GTCTATAAGCGAGAATTATATCCGGACTTCAGGTCCGC
* *
51182725 AGGCTACGTGCTGGAC
64 AAGCTACATG--GGAC
51182741 A-TATATCTG
1 ATTATATCTG
51182750 AATTTAAAGT
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 70 0.91
79 2 0.03
80 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (77 bp):
ATTATATCTGGACTTCAGGTCCGCAGTCTATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAA
GCTACATGGGAC
Found at i:51189409 original size:178 final size:179
Alignment explanation
Indices: 51189085--51189441 Score: 495
Period size: 178 Copynumber: 2.0 Consensus size: 179
51189075 GGGGGAGAGT
* * *
51189085 TGTGACAACCCTAATTTGACCATAGTCGGGAAGTGGTCTCGGGACCACAAAACCGAGTCATAAAA
1 TGTGACAACCCTAAATTGACCATAGTCGGAAAGTGGTCTCGGGACCACAAAACCGAGTCACAAAA
* * * * * *
51189150 ATATTTAGCCGTTATATTTTATGTTTATTATATGTGAATATGAATGTGTGAAAGTTTTAAACTTC
66 ATAATTAACCGTCATATTTGATGCTTATTATATGTGAATATGAATGTGTGAAAGATTTAAACTTC
*
51189215 GATTTAGTCGATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACA
131 GATTTAGTCAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACA
* * * *
51189264 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCAC-AAACCGTGTCACAAAA
1 TGTGACAACCCTAAATTGACCATAGTCGGAAAGTGGTCTCGGGACCACAAAACCGAGTCACAAAA
* * * **
51189328 ATAATTAACCGTCATATTTGATGCTTATTATGTGT-ATATATGCATGTGTGAAA-ATTTCATGTT
66 ATAATTAACCGTCATATTTGATGCTTATTATATGTGA-ATATGAATGTGTGAAAGATTTAAACTT
*
51189391 TGAATTTAGTCAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACA
130 CG-ATTTAGTCAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACA
51189442 CTTTTGAAAT
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
177 8 0.05
178 105 0.67
179 43 0.28
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (179 bp):
TGTGACAACCCTAAATTGACCATAGTCGGAAAGTGGTCTCGGGACCACAAAACCGAGTCACAAAA
ATAATTAACCGTCATATTTGATGCTTATTATATGTGAATATGAATGTGTGAAAGATTTAAACTTC
GATTTAGTCAATTGCATGTGAATTTAGTTAATAGGACTTATGTGTGACA
Found at i:51192060 original size:45 final size:46
Alignment explanation
Indices: 51191964--51192071 Score: 141
Period size: 45 Copynumber: 2.3 Consensus size: 46
51191954 AGCTTAAGAT
*
51191964 CGAAT-GCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
51192010 CGAATGGCCAATGTGAT-ATATGTGCAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
51192055 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
51192072 AAAGTGTGCA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
45 27 0.48
46 11 0.20
47 18 0.32
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:51192200 original size:39 final size:40
Alignment explanation
Indices: 51192142--51192226 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
51192132 AAATGAATTG
* * * *
51192142 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* * *
51192181 TGCTGGGATTGTATTCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
51192221 TGCTGG
1 TGCTGG
51192227 TGAATTAAGT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 16 0.42
40 22 0.58
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:51195516 original size:40 final size:40
Alignment explanation
Indices: 51195471--51195600 Score: 167
Period size: 40 Copynumber: 3.2 Consensus size: 40
51195461 CGGAATACAA
51195471 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* *
51195511 CCGGATAGAACGACTCA-CACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACGAATGCCTTCGGGTCTTAGC
* * *
51195551 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
51195591 CCGGATATAA
1 CCGGATATAA
51195601 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:51203475 original size:40 final size:40
Alignment explanation
Indices: 51203430--51203559 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
51203420 CGGAATACAA
51203430 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
51203470 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
51203510 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
51203550 CCGGATATAA
1 CCGGATATAA
51203560 TTTCCAGCAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.04
40 75 0.96
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:51206343 original size:76 final size:78
Alignment explanation
Indices: 51206210--51206365 Score: 262
Period size: 76 Copynumber: 2.0 Consensus size: 78
51206200 TGTGAATATA
51206210 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCCGGACTT
1 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCCGGACTT
51206275 CAGGTCCGCAGGC
66 CAGGTCCGCAGGC
* * *
51206288 TATATGCGAGAATTATAT-CGGACTTCATGT-CGCAGGCTATATGCGAGAATTATATCCGGACTT
1 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCCGGACTT
*
51206351 TAGGTCCGCAGGC
66 CAGGTCCGCAGGC
51206364 TA
1 TA
51206366 CGTGCTGGAC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
76 46 0.62
77 11 0.15
78 17 0.23
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (78 bp):
TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGCGAGAATTATATCCGGACTT
CAGGTCCGCAGGC
Found at i:51206382 original size:39 final size:39
Alignment explanation
Indices: 51206210--51206365 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
51206200 TGTGAATATA
*
51206210 TATACGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
51206249 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
51206288 TATATGCGAGAATTATAT-CGGACTTCATGT-CGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
51206325 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
51206364 TA
1 TA
51206366 CGTGCTGGAC
Statistics
Matches: 110, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
37 25 0.23
38 21 0.19
39 64 0.58
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:51214356 original size:39 final size:39
Alignment explanation
Indices: 51214291--51214448 Score: 226
Period size: 39 Copynumber: 4.1 Consensus size: 39
51214281 TGTGAATATA
* **
51214291 TATACGCGAAAATTATATCCAAACTTCAGGTCCGCAGGC
1 TATATGCGAAAATTATATCCGGACTTCAGGTCCGCAGGC
* *
51214330 TATAAGCGAAAATTATATCCGGACTTCAAGTCCGCAGGC
1 TATATGCGAAAATTATATCCGGACTTCAGGTCCGCAGGC
* * *
51214369 TATATGCGAGAATTATATCTGGACTTCATGTCCGCAGGC
1 TATATGCGAAAATTATATCCGGACTTCAGGTCCGCAGGC
* *
51214408 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAAAATTATATCCGGACTTCAGGTCCGCAGGC
51214447 TA
1 TA
51214449 CGTGCTGGAC
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (39 bp):
TATATGCGAAAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:51216932 original size:47 final size:47
Alignment explanation
Indices: 51216863--51217032 Score: 304
Period size: 47 Copynumber: 3.6 Consensus size: 47
51216853 AACAGCTCGT
51216863 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51216910 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
51216957 AGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51217004 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
51217033 TAATGTGAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:51217039 original size:47 final size:46
Alignment explanation
Indices: 51216863--51217229 Score: 276
Period size: 48 Copynumber: 7.7 Consensus size: 46
51216853 AACAGCTCGT
* * * **
51216863 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * **
51216910 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * *
51216957 AGTGTATATATGTGATAAGGCCTAATGG-TCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCT-AATGTGAT-AATGTGAA
**
51217004 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * **
51217053 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * *
51217101 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * * *
51217149 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGA-AATGCGTA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
* *
51217193 TGAGATATGAATATGTGGTAAAGCCGAATGGCTAATG
1 AGTG-TAT--ATATGTGGTAAAGCCGAATGGCTAATG
51217230 AGAATGTTGT
Statistics
Matches: 287, Mismatches: 24, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
44 3 0.01
45 2 0.01
46 3 0.01
47 122 0.43
48 149 0.52
49 8 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (46 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
Found at i:51217068 original size:48 final size:48
Alignment explanation
Indices: 51217010--51217229 Score: 341
Period size: 48 Copynumber: 4.6 Consensus size: 48
51217000 TGAAAGTGTA
* *
51217010 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* *
51217058 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* *
51217106 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* * * *
51217154 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
*
51217202 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
51217230 AGAATGTTGT
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 159 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
Found at i:51217328 original size:37 final size:37
Alignment explanation
Indices: 51217278--51217363 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
51217268 GGAAATATAT
*
51217278 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51217315 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51217352 TCCGGGTAAGAC
1 TCCGGGTAAGAC
51217364 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51219325 original size:40 final size:40
Alignment explanation
Indices: 51219259--51219888 Score: 982
Period size: 40 Copynumber: 15.8 Consensus size: 40
51219249 AAGAATTGAG
* * *
51219259 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
51219299 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51219339 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
51219379 AGTGATGTACCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51219419 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51219459 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51219499 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
*
51219539 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
51219579 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51219619 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATT-GTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51219658 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51219698 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51219738 AGTGATGTATCCGGACTAAGTT-CGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
51219777 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
51219817 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
51219857 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
51219889 ATCATGCTGG
Statistics
Matches: 547, Mismatches: 36, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.00
39 79 0.14
40 465 0.85
41 2 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:51223423 original size:47 final size:47
Alignment explanation
Indices: 51223354--51223523 Score: 313
Period size: 47 Copynumber: 3.6 Consensus size: 47
51223344 AACAGCTCGT
51223354 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51223401 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51223448 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51223495 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
51223524 TAATGTGAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:51223530 original size:47 final size:48
Alignment explanation
Indices: 51223354--51223773 Score: 326
Period size: 48 Copynumber: 8.8 Consensus size: 48
51223344 AACAGCTCGT
* * * **
51223354 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
51223401 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
51223448 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
**
51223495 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
51223544 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
51223592 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * *
51223640 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * * *
51223688 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATAC--ATGTGAA
*
51223738 A-TG-A-ATATGTGGTAAAGCCGAATGGCTAATGAGAAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT
51223774 GTTGTAACCT
Statistics
Matches: 344, Mismatches: 24, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 128 0.37
48 201 0.58
49 8 0.02
50 7 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAATACATGTGAA
Found at i:51223560 original size:48 final size:48
Alignment explanation
Indices: 51223501--51223768 Score: 437
Period size: 48 Copynumber: 5.6 Consensus size: 48
51223491 TGAAAGTGTA
51223501 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
51223549 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
51223597 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
51223645 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
51223693 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
51223741 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
51223769 AGAATGTTGT
Statistics
Matches: 207, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 207 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:51223867 original size:37 final size:37
Alignment explanation
Indices: 51223817--51223902 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
51223807 GGAAATATAT
*
51223817 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51223854 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51223891 TCCGGGTAAGAC
1 TCCGGGTAAGAC
51223903 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51225865 original size:40 final size:40
Alignment explanation
Indices: 51225799--51226429 Score: 1000
Period size: 40 Copynumber: 15.8 Consensus size: 40
51225789 AAGAATTGAG
* * *
51225799 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
51225839 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51225879 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
51225919 AGTGATGTACCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51225959 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51225999 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51226039 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
51226079 AGTGATGTATCCGGACTAAG-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
51226118 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51226158 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51226198 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51226238 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51226278 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC-TAGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGT-GCT
51226318 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * * *
51226358 AGTAAGGCAACCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
51226398 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
51226430 ATCATGCTGG
Statistics
Matches: 551, Mismatches: 34, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
39 37 0.07
40 513 0.93
41 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:51229962 original size:47 final size:47
Alignment explanation
Indices: 51229893--51230062 Score: 304
Period size: 47 Copynumber: 3.6 Consensus size: 47
51229883 AACAGCTCGT
51229893 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51229940 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
51229987 AGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51230034 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
51230063 TAATGTGAAA
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 118 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:51230069 original size:47 final size:46
Alignment explanation
Indices: 51229893--51230259 Score: 276
Period size: 48 Copynumber: 7.7 Consensus size: 46
51229883 AACAGCTCGT
* * * **
51229893 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * **
51229940 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAT-AATGTGAA
* * * *
51229987 AGTGTATATATGTGATAAGGCCTAATGG-TCGATGTGATGAATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCT-AATGTGAT-AATGTGAA
**
51230034 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * **
51230083 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * *
51230131 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG--ATA-ATGTGAA
* * * * *
51230179 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGA-AATGCGTA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
* *
51230223 TGAGATATGAATATGTGGTAAAGCCGAATGGCTAATG
1 AGTG-TAT--ATATGTGGTAAAGCCGAATGGCTAATG
51230260 AGAATGTTGT
Statistics
Matches: 287, Mismatches: 24, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
44 3 0.01
45 2 0.01
46 3 0.01
47 122 0.43
48 149 0.52
49 8 0.03
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (46 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGATAATGTGAA
Found at i:51230098 original size:48 final size:48
Alignment explanation
Indices: 51230040--51230259 Score: 341
Period size: 48 Copynumber: 4.6 Consensus size: 48
51230030 TGAAAGTGTA
* *
51230040 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* *
51230088 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* *
51230136 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
* * * *
51230184 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
*
51230232 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
51230260 AGAATGTTGT
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 159 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATATGAGATATG
Found at i:51230358 original size:37 final size:37
Alignment explanation
Indices: 51230308--51230393 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
51230298 GGAAATATAT
*
51230308 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51230345 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
51230382 TCCGGGTAAGAC
1 TCCGGGTAAGAC
51230394 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:51243838 original size:34 final size:35
Alignment explanation
Indices: 51243765--51243851 Score: 90
Period size: 34 Copynumber: 2.5 Consensus size: 35
51243755 AGGTAAATAT
*
51243765 ATGT-AAGCTTATATTGAACTTGATTATTCTATTAC
1 ATGTGAAG-TTATATTGAACTTGATTATTCGATTAC
* **
51243800 ATGTGAA-TTATATTGAACTT-ATATATTCGGTTTT
1 ATGTGAAGTTATATTGAACTTGAT-TATTCGATTAC
*
51243834 ATGTGAAGTTATTTTGAA
1 ATGTGAAGTTATATTGAA
51243852 TGTGCATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 2 0.05
34 27 0.61
35 13 0.30
36 2 0.05
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (35 bp):
ATGTGAAGTTATATTGAACTTGATTATTCGATTAC
Found at i:51252170 original size:19 final size:19
Alignment explanation
Indices: 51252143--51252195 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
51252133 ACTCGGAAGC
*
51252143 AAGATCTCCTTCAAGACTG
1 AAGATCTCCTTCAAGACTA
*
51252162 AAGAGCTCCTTCAAGACTA
1 AAGATCTCCTTCAAGACTA
51252181 AAGATCTCCATTCAA
1 AAGATCTCC-TTCAA
51252196 TTTCTCTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 25 0.83
20 5 0.17
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (19 bp):
AAGATCTCCTTCAAGACTA
Found at i:51267575 original size:38 final size:40
Alignment explanation
Indices: 51267519--51267754 Score: 333
Period size: 38 Copynumber: 6.0 Consensus size: 40
51267509 CGGATGATAA
* * *
51267519 CCGGGCTAAGTCCC-AAGGCATTTGTTCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51267557 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51267596 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51267635 CCGGGCTAAGTCTCGAAGGCATTTGTG-G-GTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51267673 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51267713 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
51267753 CC
1 CC
51267755 AGCTAAATTC
Statistics
Matches: 178, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
37 3 0.02
38 70 0.39
39 37 0.21
40 68 0.38
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51267691 original size:78 final size:80
Alignment explanation
Indices: 51267519--51267754 Score: 342
Period size: 78 Copynumber: 3.0 Consensus size: 80
51267509 CGGATGATAA
* * * **
51267519 CCGGGCTAAGTCCC-AAGGCATTTGTTCTAGTGACTA-ATTCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
51267581 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
*
51267596 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCTCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
51267660 TG-G-GTTACTATAT
66 TGCGAGTTACTATAT
51267673 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
* *
51267738 AGCAAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
51267753 CC
1 CC
51267755 AGCTAAATTC
Statistics
Matches: 143, Mismatches: 9, Indels: 11
0.88 0.06 0.07
Matches are distributed among these distances:
76 11 0.08
77 33 0.23
78 73 0.51
79 17 0.12
80 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:51276767 original size:29 final size:28
Alignment explanation
Indices: 51276735--51276836 Score: 84
Period size: 29 Copynumber: 3.5 Consensus size: 28
51276725 GTGACGAGAT
*
51276735 TGGCACTGAGTGTGCGAGCTTGAAATGTA
1 TGGCACT-AGTGTGCGAGCTTGAAATATA
* * *
51276764 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGAAATATA
*
51276793 TGGCACTATGTGTGC-AGGCTT-AAATCACA
1 TGGCACTA-GTGTGCGA-GCTTGAAAT-ATA
51276822 T-GCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
51276837 TGATCGAGTA
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
28 15 0.25
29 44 0.75
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGAAATATA
Found at i:51282754 original size:27 final size:27
Alignment explanation
Indices: 51282724--51282775 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
51282714 AATCTCATAT
*
51282724 CTATAGGGTAGAATTACTGAAATACTC
1 CTATAGGGTAGAATTACTAAAATACTC
51282751 CTATAGGGTAGAATTACTAAAATAC
1 CTATAGGGTAGAATTACTAAAATAC
51282776 CCTTGGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (27 bp):
CTATAGGGTAGAATTACTAAAATACTC
Found at i:51282792 original size:27 final size:27
Alignment explanation
Indices: 51282762--51283105 Score: 285
Period size: 27 Copynumber: 12.7 Consensus size: 27
51282752 TATAGGGTAG
* *
51282762 AATTACTAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * *
51282789 AATTACCAAAATACCCTTGATTAGCAA
1 AATTACCAAAATACCCTTGGTTTGTAA
*
51282816 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * *
51282843 AATTACCAAAATACCCCTAGTTTGAAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * * *
51282870 AACTACCAAAATACCCCTAGTTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * ***
51282897 AATTACCGAAATACCCTCGACCTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * **
51282924 AATTACCGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* ** *
51282951 AATTACGAAAATACTTTTGATTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
51282978 AATTACCAAAATAACCC-TGATTTATAA
1 AATTACCAAAAT-ACCCTTGGTTTGTAA
* * **
51283005 AATTACAAAAATACCCTTGACTTTCAAA
1 AATTACCAAAATACCCTTG-GTTTGTAA
* * *
51283033 AATTACAAAAATACCATTGGTTTGCAA
1 AATTACCAAAATACCCTTGGTTTGTAA
* * * * *
51283060 AATTATCGAGATACACTTGGTTTGTAG
1 AATTACCAAAATACCCTTGGTTTGTAA
* *
51283087 ATTTACCAAAACACCCTTG
1 AATTACCAAAATACCCTTG
51283106 TAGGGTGAAA
Statistics
Matches: 258, Mismatches: 56, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 4 0.02
27 229 0.89
28 25 0.10
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGGTTTGTAA
Found at i:51283690 original size:27 final size:27
Alignment explanation
Indices: 51283642--51283694 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
51283632 CAACTGTTAC
51283642 TGATTTTGAGAATGGGCTAGACCCAAT
1 TGATTTTGAGAATGGGCTAGACCCAAT
*
51283669 TGATTTTGATAA-GGGCTGAGACCCAA
1 TGATTTTGAGAATGGGCT-AGACCCAA
51283695 GTGAAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.28
Consensus pattern (27 bp):
TGATTTTGAGAATGGGCTAGACCCAAT
Found at i:51291454 original size:38 final size:38
Alignment explanation
Indices: 51291357--51291464 Score: 135
Period size: 38 Copynumber: 2.8 Consensus size: 38
51291347 GGCTTAAAGA
** * *
51291357 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
51291395 CCCGTAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * * *
51291433 CCTGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
51291465 CCTTCGTGCC
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:51291534 original size:43 final size:43
Alignment explanation
Indices: 51291457--51291538 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
51291447 GCTGGTATTA
* **
51291457 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGATGTG
51291500 TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGA
51291539 AATAATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.13, C:0.26, G:0.33, T:0.28
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCATAATGCCGGTGATGTG
Found at i:51292427 original size:38 final size:38
Alignment explanation
Indices: 51292331--51292438 Score: 144
Period size: 38 Copynumber: 2.8 Consensus size: 38
51292321 GGCTTAAAGA
** * *
51292331 CCCGCAGGCTTCGTGCTGGTAAAATATCCAGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
51292369 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * * *
51292407 CCCGCAGGCCTAGTGTTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
51292439 CCTTCATGCC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:51299949 original size:40 final size:40
Alignment explanation
Indices: 51299905--51300131 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
51299895 GCTACTTGCT
*
51299905 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51299945 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
51299985 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
51300025 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
51300065 -AAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
51300103 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
51300132 CATCCGAATA
Statistics
Matches: 169, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
37 1 0.01
38 18 0.11
39 26 0.15
40 123 0.73
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:51300004 original size:80 final size:80
Alignment explanation
Indices: 51299872--51300127 Score: 360
Period size: 80 Copynumber: 3.2 Consensus size: 80
51299862 AAACCAAGTA
* * * *
51299872 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
51299935 GTAACTCGTACAAATG
65 GTAACTCGCACAAATG
51299951 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
*
51300016 TAACTCACACAAATG
66 TAACTCGCACAAATG
* * *
51300031 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCA-AAATGCCTTCGGG-CTTAGCCCAG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
51300093 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
51300109 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51300128 TTATCATCCG
Statistics
Matches: 161, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
77 1 0.01
78 42 0.26
79 26 0.16
80 92 0.57
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:51300130 original size:118 final size:120
Alignment explanation
Indices: 51299905--51300131 Score: 370
Period size: 118 Copynumber: 1.9 Consensus size: 120
51299895 GCTACTTGCT
* * *
51299905 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
51299970 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
*
51300025 CAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCA-AAATGCCTTCGGG-CTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-G
*
51300088 AAT-TAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
65 AATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
51300132 CATCCGAATA
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
118 47 0.47
119 16 0.16
120 37 0.37
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:51306106 original size:27 final size:26
Alignment explanation
Indices: 51306058--51306117 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
51306048 GCGAAGCTGC
*
51306058 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
51306085 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
51306111 CAGATAT
1 CAGATAT
51306118 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:51311554 original size:29 final size:30
Alignment explanation
Indices: 51311499--51311572 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
51311489 TATAGTGAAT
* *
51311499 CCGCACACTTAGTGCTATATACATTT-AGC
1 CCGCACACTTAGTGCTATACACATTTAAAC
* *
51311528 TCGCACACTTAGTGCTGTACA-ATTTTAAAC
1 CCGCACACTTAGTGCTATACACA-TTTAAAC
51311558 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51311573 CAATCTTGTC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 1 0.03
29 21 0.55
30 16 0.42
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (30 bp):
CCGCACACTTAGTGCTATACACATTTAAAC
Found at i:51317725 original size:24 final size:24
Alignment explanation
Indices: 51317698--51317757 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
51317688 ATTATGTTCA
51317698 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
51317722 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
51317746 CACACATAGTGC
1 CACACATAGTGC
51317758 ATTTGAGATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCG
Found at i:51319720 original size:39 final size:39
Alignment explanation
Indices: 51319639--51319801 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
51319629 TATGGTAACC
* *
51319639 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
51319679 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51319718 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
51319757 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCGCAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51319796 CGCACA
1 CGCACA
51319802 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 98 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51328814 original size:23 final size:24
Alignment explanation
Indices: 51328761--51328819 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
51328751 ATTATGTTCA
51328761 CACACATAGTGCCATAGTAAATCG
1 CACACATAGTGCCATAGTAAATCG
51328785 CACACATAGTGCCATAGTAAAT-G
1 CACACATAGTGCCATAGTAAATCG
51328808 CACACATAGTGC
1 CACACATAGTGC
51328820 ATTTGAGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 13 0.37
24 22 0.63
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATAGTAAATCG
Found at i:51331959 original size:46 final size:46
Alignment explanation
Indices: 51331858--51331945 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
51331848 TGTAACCCGC
* * * *
51331858 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
51331904 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
51331946 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:51339447 original size:46 final size:46
Alignment explanation
Indices: 51339346--51339433 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
51339336 TGTAACCCGC
* * * *
51339346 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
51339392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
51339434 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:51341024 original size:50 final size:49
Alignment explanation
Indices: 51340963--51341093 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
51340953 GAGATGTGTC
* * * *
51340963 AGTGTAGGACCATCTCTGGGACATGGCATCGACAC-GGATATGT-GAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT-T-TCAAGAGTT
* *
51341013 AGTGTAAGACCATGTCTGGGACATGGCGTCGACCTCGATTTCAATAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTCAAGAGTT
* *
51341062 AGTGTAAGACCATGTTTGAGACATGGCATCGA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA
51341094 TTTGATGGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.01
49 36 0.51
50 33 0.47
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTTCAAGAGTT
Found at i:51348895 original size:17 final size:17
Alignment explanation
Indices: 51348873--51348908 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
51348863 TGTTATCAAA
*
51348873 AGTGTGGGGGGTAACAT
1 AGTGTGGGGCGTAACAT
51348890 AGTGTGGGGCGTAACAT
1 AGTGTGGGGCGTAACAT
51348907 AG
1 AG
51348909 AGATTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.08, G:0.44, T:0.22
Consensus pattern (17 bp):
AGTGTGGGGCGTAACAT
Found at i:51351759 original size:40 final size:39
Alignment explanation
Indices: 51351714--51351843 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
51351704 CGGAATATAA
51351714 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
51351754 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51351794 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
51351834 CCGGATATAA
1 CCGGATATAA
51351844 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51351858 original size:40 final size:40
Alignment explanation
Indices: 51351730--51351880 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
51351720 ATAACCATGT
* * *
51351730 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
51351770 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
51351810 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
51351850 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
51351881 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:51351864 original size:80 final size:79
Alignment explanation
Indices: 51351730--51351878 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
51351720 ATAACCATGT
* *
51351730 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
51351795 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
51351810 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
51351873 CCGGAT
64 CCGGAT
51351879 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:51358779 original size:53 final size:55
Alignment explanation
Indices: 51358699--51358838 Score: 162
Period size: 56 Copynumber: 2.6 Consensus size: 55
51358689 TGTAAAAAAG
* * * *
51358699 TTGTTAAAAGATAATATCCCATAATAATATCCTATAATAT-C-TTAGGAATTAAA
1 TTGTTAAAAGATAATATCCTATAATAATATCCTATAACATCCATTAAGAATCAAA
**
51358752 TTGTTAAGAA-ATAATATCCTATAATAATATTTTATAACATCCCATTAAGAATCAAA
1 TTGTTAA-AAGATAATATCCTATAATAATATCCTATAACAT-CCATTAAGAATCAAA
*
51358808 TTGTTAAAAGATAATAT-ATCATAATAATATC
1 TTGTTAAAAGATAATATCCT-ATAATAATATC
51358839 TTAATACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
53 33 0.45
54 2 0.03
55 4 0.05
56 34 0.47
ACGTcount: A:0.46, C:0.11, G:0.06, T:0.36
Consensus pattern (55 bp):
TTGTTAAAAGATAATATCCTATAATAATATCCTATAACATCCATTAAGAATCAAA
Found at i:51360307 original size:15 final size:16
Alignment explanation
Indices: 51360278--51360308 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51360268 GTAAAGAATG
51360278 AGATTTTATTGAATCT
1 AGATTTTATTGAATCT
51360294 AGATTTTATT-AATCT
1 AGATTTTATTGAATCT
51360309 TGGTGTATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (16 bp):
AGATTTTATTGAATCT
Done.