Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 166 of 318
Found at i:51363565 original size:31 final size:31
Alignment explanation
Indices: 51363528--51363591 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
51363518 CACCATTTAT
51363528 TTACCCTTAATTTGGATTTAAAAAATAAATG
1 TTACCCTTAATTTGGATTTAAAAAATAAATG
51363559 TTACCCTTAATTTGGATTTAAAAAATAAATG
1 TTACCCTTAATTTGGATTTAAAAAATAAATG
51363590 TT
1 TT
51363592 TTAAACCGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (31 bp):
TTACCCTTAATTTGGATTTAAAAAATAAATG
Found at i:51363844 original size:29 final size:30
Alignment explanation
Indices: 51363812--51363870 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
51363802 TATGGTTTAA
51363812 TGTGCAATTATATACAT-AAATTATGATTT
1 TGTGCAATTATATACATGAAATTATGATTT
* * *
51363841 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTATATACATGAAATTATGATTT
51363871 GACCTTGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (30 bp):
TGTGCAATTATATACATGAAATTATGATTT
Found at i:51365819 original size:29 final size:29
Alignment explanation
Indices: 51365786--51365916 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
51365776 GTGACGAGAT
51365786 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
51365815 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
51365844 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
51365873 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
51365902 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
51365917 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:51373877 original size:29 final size:29
Alignment explanation
Indices: 51373844--51373974 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
51373834 GTGACGAGAT
51373844 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
51373873 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
51373902 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
51373931 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
51373960 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
51373975 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:51381469 original size:49 final size:49
Alignment explanation
Indices: 51381395--51381734 Score: 558
Period size: 49 Copynumber: 7.0 Consensus size: 49
51381385 TACATATATG
* * **
51381395 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATACATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
*
51381444 TGTGATAAGGCCTAAAGGCCGATGTGATGAATGTGAAAATGTATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
51381493 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
51381542 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
*
51381591 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAATATATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
* * * *
51381639 TGTGATAAGGCCTAAGGGCCGATGTGATGAATGTGGAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
* *
51381688 TGTGATAAGGCCTAATGGCCGATGTGATGAATGCG-ATATGTATATGT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGT
51381735 GGTAAAGCCG
Statistics
Matches: 274, Mismatches: 16, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
48 55 0.20
49 219 0.80
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
Found at i:51381849 original size:37 final size:37
Alignment explanation
Indices: 51381799--51381881 Score: 166
Period size: 37 Copynumber: 2.2 Consensus size: 37
51381789 AACTTGGAAA
51381799 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
51381836 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
51381873 TATGTCCGG
1 TATGTCCGG
51381882 TAAGACTTCG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
Found at i:51383826 original size:40 final size:40
Alignment explanation
Indices: 51383771--51383962 Score: 339
Period size: 40 Copynumber: 4.8 Consensus size: 40
51383761 GAGAATTGAG
*
51383771 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51383811 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
51383851 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
51383891 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
51383931 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
51383963 ATCATACTGG
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 147 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:51384802 original size:40 final size:41
Alignment explanation
Indices: 51384705--51384806 Score: 127
Period size: 40 Copynumber: 2.5 Consensus size: 41
51384695 TTCGAATGGT
* * *
51384705 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAAATCCCGAAGGCATTGGTGCTAAGTGACTAA
* * *
51384746 ATCCGGG-TCAATTCCCGAAGGCATTGGTGC-GAGTTACTAA
1 ATCCGGGCT-AAATCCCGAAGGCATTGGTGCTAAGTGACTAA
51384786 ATCCGGGCTAAATCCCGAAGG
1 ATCCGGGCTAAATCCCGAAGG
51384807 TACGTGATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
40 27 0.51
41 26 0.49
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATCCGGGCTAAATCCCGAAGGCATTGGTGCTAAGTGACTAA
Found at i:51387683 original size:49 final size:49
Alignment explanation
Indices: 51387628--51387870 Score: 380
Period size: 49 Copynumber: 5.0 Consensus size: 49
51387618 TACATATATG
* *
51387628 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAATGTATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
51387677 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
*
51387726 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATATATGTA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
* * * * *
51387775 TGTGATAAGGCCTAAGGGTCGATGTGATGAATGTGGAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
* * *
51387824 TGTGATAAGGCCTAATGGTCGATGTGATGAATGCG-ATATGTATATGT
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGT
51387871 GGTAAAGCCG
Statistics
Matches: 180, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 9 0.05
49 171 0.95
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATGTA
Found at i:51387986 original size:37 final size:37
Alignment explanation
Indices: 51387935--51388021 Score: 156
Period size: 37 Copynumber: 2.3 Consensus size: 37
51387925 AACTTGGAAA
*
51387935 TATGTTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTACGACCCGATGACTACGTGTAGAGAT
51387973 TATGTCCGGGTACGACCCGATGACTACGTGTAGAGAT
1 TATGTCCGGGTACGACCCGATGACTACGTGTAGAGAT
51388010 TATGTCCGGGTA
1 TATGTCCGGGTA
51388022 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.22, C:0.21, G:0.31, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTACGACCCGATGACTACGTGTAGAGAT
Found at i:51408388 original size:46 final size:46
Alignment explanation
Indices: 51408247--51408378 Score: 219
Period size: 46 Copynumber: 2.9 Consensus size: 46
51408237 ATATATATAT
* * * *
51408247 ATATACATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
*
51408293 ATATCCATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTC
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
51408339 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTT
51408379 CGCCACATAT
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
ATATCCATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTC
Found at i:51408433 original size:47 final size:47
Alignment explanation
Indices: 51408402--51408548 Score: 267
Period size: 47 Copynumber: 3.1 Consensus size: 47
51408392 CACTTCCACG
**
51408402 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
51408449 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
51408496 TTCATCACATTGGCCATTCGGCCTTATCCCATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
51408543 TTCATC
1 TTCATC
51408549 TTATAAAATC
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:51408480 original size:22 final size:22
Alignment explanation
Indices: 51408452--51408523 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
51408442 GTTCACATTC
51408452 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
51408474 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
51408498 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
51408521 ATC
1 ATC
51408524 CCATATATGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:51421168 original size:40 final size:40
Alignment explanation
Indices: 51421110--51421277 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
51421100 CAATTGAATG
* *
51421110 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
51421151 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
51421190 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
51421230 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
51421270 ATATCCGG
1 ATATCCGG
51421278 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:51421248 original size:80 final size:79
Alignment explanation
Indices: 51421110--51421277 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
51421100 CAATTGAATG
* * *
51421110 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
51421175 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
51421190 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
51421254 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
51421270 ATATCCGG
1 ATATCCGG
51421278 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:51429170 original size:40 final size:40
Alignment explanation
Indices: 51429112--51429279 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
51429102 CAATTGAATG
* *
51429112 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
51429153 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
51429192 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
51429232 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
51429272 ATATCCGG
1 ATATCCGG
51429280 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:51429250 original size:80 final size:79
Alignment explanation
Indices: 51429112--51429279 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
51429102 CAATTGAATG
* * *
51429112 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
51429177 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
51429192 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
51429256 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
51429272 ATATCCGG
1 ATATCCGG
51429280 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:51436641 original size:41 final size:41
Alignment explanation
Indices: 51436596--51436713 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51436586 TGAAAGATAA
51436596 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51436637 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51436667 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51436708 ATGTAG
1 ATGTAG
51436714 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51436652 original size:71 final size:71
Alignment explanation
Indices: 51436564--51436727 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51436554 GAGATGTATC
51436564 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51436629 AGGACA
66 AGGACA
51436635 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51436700 AGGACA
66 AGGACA
51436706 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51436728 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51438163 original size:17 final size:18
Alignment explanation
Indices: 51438129--51438164 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
51438119 TGAATTTCTA
51438129 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
51438147 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
51438164 T
1 T
51438165 AACTCATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:51453430 original size:58 final size:57
Alignment explanation
Indices: 51453345--51453475 Score: 135
Period size: 58 Copynumber: 2.3 Consensus size: 57
51453335 AATCGATCAC
* *
51453345 GCACACTTAGTGCCATGTGATTTAAGCTCGCACACATT-GTGCCGTATA-ATTT-AAATTT
1 GCACACTTAGTGCCATCT-ATTTAAGCTCGCACAC-TTAGTGCC--ATACATTTCAAACTT
* * *
51453403 GCACACTTAGTGCCATACT-TTTCAAGCTTGCACACTTAGTGCCATACTTTTCAAGCTT
1 GCACACTTAGTGCCAT-CTATTT-AAGCTCGCACACTTAGTGCCATACATTTCAAACTT
51453461 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
51453476 ATCTTGTCAC
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
56 3 0.05
57 8 0.13
58 51 0.81
59 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (57 bp):
GCACACTTAGTGCCATCTATTTAAGCTCGCACACTTAGTGCCATACATTTCAAACTT
Found at i:51453433 original size:29 final size:29
Alignment explanation
Indices: 51453401--51453475 Score: 150
Period size: 29 Copynumber: 2.6 Consensus size: 29
51453391 TAATTTAAAT
51453401 TTGCACACTTAGTGCCATACTTTTCAAGC
1 TTGCACACTTAGTGCCATACTTTTCAAGC
51453430 TTGCACACTTAGTGCCATACTTTTCAAGC
1 TTGCACACTTAGTGCCATACTTTTCAAGC
51453459 TTGCACACTTAGTGCCA
1 TTGCACACTTAGTGCCA
51453476 ATCTTGTCAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (29 bp):
TTGCACACTTAGTGCCATACTTTTCAAGC
Found at i:51456019 original size:39 final size:39
Alignment explanation
Indices: 51455995--51456146 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
51455985 GTCCAGCACG
* * *
51455995 TAGCCTGCGGACCTAAAGTCCAGATATAATTCTTGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
51456034 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
51456073 TAGCCTGCAGACCTGAAGTCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
51456112 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCG
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCG
51456147 GGTATATATA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 105 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:51463772 original size:2 final size:2
Alignment explanation
Indices: 51463765--51463792 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51463755 CGAAATTACG
51463765 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51463793 CACTAACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:51464206 original size:39 final size:39
Alignment explanation
Indices: 51464163--51464320 Score: 244
Period size: 39 Copynumber: 4.1 Consensus size: 39
51464153 GTCCAGCACG
*
51464163 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
51464202 TAGCCTGCGAACTTGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* * *
51464241 TAGCCTGCAGACCTGAAGTTCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
51464280 TAGCCTGCGGACCTGAAGTCCGGACATAATTCTCGCGTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
51464319 TA
1 TA
51464321 TATATTCACA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:51466160 original size:24 final size:23
Alignment explanation
Indices: 51466128--51466236 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
51466118 ACCAAACGTT
* **
51466128 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
51466152 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
51466176 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
51466200 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
51466224 GCACACATAGTGC
1 GCACACATAGTGC
51466237 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:51466202 original size:48 final size:48
Alignment explanation
Indices: 51466128--51466236 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
51466118 ACCAAACGTT
* **
51466128 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
51466176 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
51466224 GCACACATAGTGC
1 GCACACATAGTGC
51466237 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:51468743 original size:40 final size:40
Alignment explanation
Indices: 51468616--51468745 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
51468606 ATGCTGGAAA
* * *
51468616 TTATATCCGGGTTAAGACCCAAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
51468656 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
51468696 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
51468736 TTATATCCGG
1 TTATATCCGG
51468746 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:51477232 original size:24 final size:23
Alignment explanation
Indices: 51477200--51477308 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
51477190 ACCAAACGTT
* **
51477200 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
51477224 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
51477248 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
51477272 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
51477296 GCACACATAGTGC
1 GCACACATAGTGC
51477309 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:51477274 original size:48 final size:48
Alignment explanation
Indices: 51477200--51477308 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
51477190 ACCAAACGTT
* **
51477200 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
51477248 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
51477296 GCACACATAGTGC
1 GCACACATAGTGC
51477309 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:51480867 original size:39 final size:39
Alignment explanation
Indices: 51480798--51480918 Score: 188
Period size: 39 Copynumber: 3.1 Consensus size: 39
51480788 AATTATGTTA
* *
51480798 CCAGCACAAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * *
51480837 CTAGCAGGAAGTCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
51480876 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
51480915 CCAG
1 CCAG
51480919 TGTCTTGCTT
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:51481683 original size:40 final size:40
Alignment explanation
Indices: 51481638--51481804 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
51481628 CGGAATATAA
51481638 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51481678 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51481718 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51481758 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51481797 CCGGATAT
1 CCGGATAT
51481805 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51481788 original size:80 final size:79
Alignment explanation
Indices: 51481638--51481804 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
51481628 CGGAATATAA
* *
51481638 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
51481703 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
51481718 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
51481780 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
51481797 CCGGATAT
1 CCGGATAT
51481805 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:51482653 original size:17 final size:19
Alignment explanation
Indices: 51482630--51482675 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51482620 AAGAAGCATG
51482630 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51482648 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51482666 AATCATGCTC
1 AATCATGCTC
51482676 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51488909 original size:40 final size:40
Alignment explanation
Indices: 51488864--51489030 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
51488854 CGGAATATAA
51488864 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51488904 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
51488944 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51488984 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51489023 CCGGATAT
1 CCGGATAT
51489031 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51489014 original size:80 final size:79
Alignment explanation
Indices: 51488864--51489030 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
51488854 CGGAATATAA
* *
51488864 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
51488929 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
51488944 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
51489006 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
51489023 CCGGATAT
1 CCGGATAT
51489031 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:51489879 original size:17 final size:19
Alignment explanation
Indices: 51489856--51489901 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51489846 AAGAAGCATG
51489856 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51489874 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51489892 AATCATGCTC
1 AATCATGCTC
51489902 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51497253 original size:38 final size:39
Alignment explanation
Indices: 51497143--51497262 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
51497133 AATTATGTTA
*
51497143 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
51497182 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
51497221 CCAGCACGAAGCCTGC-GGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
51497259 CCAG
1 CCAG
51497263 TGTCTTGCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
38 25 0.32
39 52 0.68
ACGTcount: A:0.23, C:0.31, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:51499795 original size:29 final size:29
Alignment explanation
Indices: 51499753--51499824 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
51499743 TTTTTTTTTT
51499753 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
51499782 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
51499811 TTTCCAGCACGCAC
1 TTTCCAGCATGCAC
51499825 GCACACTTAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:51504478 original size:79 final size:81
Alignment explanation
Indices: 51504387--51504570 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
51504377 ACGACTCGCT
* *
51504387 CAAATGCCTTCGGGACGAAGCCC-G-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACGAAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51504449 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
** * **
51504466 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACGAAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51504530 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
**
51504546 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACGAAGCCCGGA
51504571 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 9 0.10
79 61 0.68
80 20 0.22
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACGAAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:51504500 original size:39 final size:40
Alignment explanation
Indices: 51504387--51504570 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
51504377 ACGACTCGCT
** * *
51504387 CAAATGCCTTCGGGACGAAGCCC-G-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
51504426 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* *
51504466 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
51504505 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
51504546 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51504571 CATCATTCGA
Statistics
Matches: 118, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 50 0.42
40 55 0.47
41 11 0.09
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:51509402 original size:79 final size:81
Alignment explanation
Indices: 51509301--51509485 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51509291 ACGACTCGCT
** * *
51509301 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51509364 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
51509381 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51509445 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
51509461 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51509486 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:51509485 original size:40 final size:39
Alignment explanation
Indices: 51509294--51509485 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
51509284 GGATATAACG
* ** * *
51509294 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51509334 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
51509374 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
51509413 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
51509453 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
51509486 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:51519419 original size:28 final size:28
Alignment explanation
Indices: 51519387--51519483 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
51519377 GCGTAGATCA
51519387 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
51519415 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
51519443 CGAAATTACCCCTAAAGATCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
51519471 CGATA-TACCCCTA
1 CGAAATTACCCCTA
51519484 GGGTTTTAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 8 0.12
28 59 0.88
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:51520673 original size:39 final size:39
Alignment explanation
Indices: 51520619--51520743 Score: 126
Period size: 40 Copynumber: 3.2 Consensus size: 39
51520609 TGTTACATAA
* *
51520619 CCCGGGTTTAGTAACTTGCACAAATGCCTTCGGGCTTAG
1 CCCGGATTTAGTAACTTGCACAAATGCCTTCGGACTTAG
* * * *
51520658 CCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAG
1 CCCGGATTTAGTAACTTGCACAAATGCCTTCGGA-CTTAG
* * * *
51520698 TCCGGATATAGTCACTTAGCACAAA-ACCTTCAGGACTTAG
1 CCCGGATTTAGTAACTT-GCACAAATGCCTTC-GGACTTAG
51520738 CCCGGA
1 CCCGGA
51520744 CATCATTCGA
Statistics
Matches: 68, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
39 29 0.43
40 30 0.44
41 9 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCCGGATTTAGTAACTTGCACAAATGCCTTCGGACTTAG
Found at i:51524139 original size:40 final size:40
Alignment explanation
Indices: 51524080--51524195 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
51524070 ATTCGGATTG
51524080 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
51524120 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
51524160 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT
51524196 AGCTATATCT
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 66 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:51541349 original size:43 final size:43
Alignment explanation
Indices: 51541302--51541427 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 43
51541292 CATCAATTTG
*
51541302 TGATTTACATGTAAGACCATGTTTGGGACATTGGCATTGTATA
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTATA
* * ** *
51541345 TGATTT-CATGTAAGACCCTGTCTGGGACAGTGGTTTTGATATT
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTG-TATA
* * *
51541388 TGA-TTACATGTAAGACCACGTCTGGGACGTTGACATTGTA
1 TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
51541428 CGAGATTATG
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
42 31 0.46
43 37 0.54
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (43 bp):
TGATTTACATGTAAGACCATGTCTGGGACATTGGCATTGTATA
Found at i:51544426 original size:19 final size:21
Alignment explanation
Indices: 51544390--51544428 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51544380 TGTTTATTTA
*
51544390 ATAACTATGGTATGCAAAAAT
1 ATAACTATGGAATGCAAAAAT
51544411 ATAACTAT-GAAT-CAAAAA
1 ATAACTATGGAATGCAAAAA
51544429 AAAATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 3 0.18
21 8 0.47
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.26
Consensus pattern (21 bp):
ATAACTATGGAATGCAAAAAT
Found at i:51545334 original size:38 final size:35
Alignment explanation
Indices: 51545275--51545392 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
51545265 TCAATCATGC
*
51545275 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
51545314 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
51545345 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
51545376 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
51545393 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:51545336 original size:31 final size:31
Alignment explanation
Indices: 51545298--51545392 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
51545288 CCTTTTCATA
*
51545298 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
51545329 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
51545360 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
51545391 TT
1 TT
51545393 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:51545635 original size:24 final size:24
Alignment explanation
Indices: 51545584--51545702 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
51545574 GTTTTATCAT
*
51545584 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
51545609 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
51545633 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
51545656 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
51545680 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51545703 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:51545663 original size:47 final size:48
Alignment explanation
Indices: 51545584--51545702 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
51545574 GTTTTATCAT
*
51545584 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
51545633 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
51545680 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
51545703 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:51545778 original size:20 final size:20
Alignment explanation
Indices: 51545753--51545812 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
51545743 TATGATTACC
51545753 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
51545773 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
51545793 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
51545813 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:51545887 original size:25 final size:25
Alignment explanation
Indices: 51545855--51545902 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51545845 ATACATAAAC
* * *
51545855 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51545880 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
51545903 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51546192 original size:11 final size:11
Alignment explanation
Indices: 51546173--51546242 Score: 67
Period size: 11 Copynumber: 6.7 Consensus size: 11
51546163 GATTTTGATA
51546173 CATATCATGTG
1 CATATCATGTG
*
51546184 CATAGCATGTG
1 CATATCATGTG
*
51546195 CATATCA--TA
1 CATATCATGTG
51546204 CATATCATGTG
1 CATATCATGTG
* *
51546215 CATAGCA--TA
1 CATATCATGTG
*
51546224 CATTTCATGTG
1 CATATCATGTG
51546235 CATATCAT
1 CATATCAT
51546243 ACATACCATA
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
9 14 0.31
11 31 0.69
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (11 bp):
CATATCATGTG
Found at i:51546212 original size:20 final size:20
Alignment explanation
Indices: 51546184--51546247 Score: 101
Period size: 20 Copynumber: 3.2 Consensus size: 20
51546174 ATATCATGTG
*
51546184 CATAGCATGTGCATATCATA
1 CATATCATGTGCATATCATA
*
51546204 CATATCATGTGCATAGCATA
1 CATATCATGTGCATATCATA
*
51546224 CATTTCATGTGCATATCATA
1 CATATCATGTGCATATCATA
51546244 CATA
1 CATA
51546248 CCATACCCAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.33
Consensus pattern (20 bp):
CATATCATGTGCATATCATA
Found at i:51546242 original size:31 final size:30
Alignment explanation
Indices: 51546170--51546231 Score: 90
Period size: 31 Copynumber: 2.1 Consensus size: 30
51546160 TGGGATTTTG
*
51546170 ATACATATCATGTGCATAGCATGTGCATATC
1 ATACATATCATGTGCATAGCA-GTACATATC
*
51546201 ATACATATCATGTGCATAGCA-TACATTTC
1 ATACATATCATGTGCATAGCAGTACATATC
51546230 AT
1 AT
51546232 GTGCATATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 8 0.28
31 21 0.72
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (30 bp):
ATACATATCATGTGCATAGCAGTACATATC
Found at i:51547162 original size:27 final size:27
Alignment explanation
Indices: 51546806--51547151 Score: 390
Period size: 27 Copynumber: 12.8 Consensus size: 27
51546796 GGGTATTTTA
* * *
51546806 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
51546833 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * **
51546860 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
51546887 GTAATTCTATAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
51546914 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
51546941 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * * *
51546968 ATAATTATGTAAATCTAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
51546995 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
51547022 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
51547049 GTAATTCTGTAAA-CTGAGGGGAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
51547076 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
51547103 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
51547130 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
51547152 CTTTGGTAAT
Statistics
Matches: 286, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
26 3 0.01
27 281 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:51547173 original size:27 final size:27
Alignment explanation
Indices: 51547075--51547379 Score: 242
Period size: 27 Copynumber: 11.3 Consensus size: 27
51547065 AGGGGAAAAC
* * ****
51547075 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
51547102 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
51547129 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
51547156 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
51547183 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
51547210 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
51547237 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
51547264 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
51547291 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * * *
51547318 GGTAATTTTATAAACCAATGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
51547345 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
51547371 GGTAATTTT
1 GGTAATTTT
51547380 GTAAACCAAA
Statistics
Matches: 241, Mismatches: 34, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
26 18 0.07
27 221 0.92
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:51547393 original size:26 final size:26
Alignment explanation
Indices: 51547229--51547396 Score: 174
Period size: 27 Copynumber: 6.3 Consensus size: 26
51547219 ACAAATTAGG
* *
51547229 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
51547256 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
51547283 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
51547310 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
51547336 TGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
51547363 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
51547389 AGTATTTT
1 GGTATTTT
51547397 AAACATGGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 28 0.22
27 97 0.78
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:51548534 original size:49 final size:49
Alignment explanation
Indices: 51548480--51548576 Score: 194
Period size: 49 Copynumber: 2.0 Consensus size: 49
51548470 GGCTAACAAA
51548480 ATTTACTTGTACATATTCATTAATTTTCAAATAACTAACGAATTTATAT
1 ATTTACTTGTACATATTCATTAATTTTCAAATAACTAACGAATTTATAT
51548529 ATTTACTTGTACATATTCATTAATTTTCAAATAACTAACGAATTTATA
1 ATTTACTTGTACATATTCATTAATTTTCAAATAACTAACGAATTTATA
51548577 AAGCCGTACA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.44
Consensus pattern (49 bp):
ATTTACTTGTACATATTCATTAATTTTCAAATAACTAACGAATTTATAT
Found at i:51551256 original size:40 final size:40
Alignment explanation
Indices: 51551211--51551378 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
51551201 CGGAATACAA
51551211 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
51551251 CCGGATTTAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* ** *
51551291 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
** ** * *
51551331 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
51551371 CCGGATAT
1 CCGGATAT
51551379 CATTCAATTG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 105 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:51559230 original size:40 final size:40
Alignment explanation
Indices: 51559185--51559342 Score: 201
Period size: 40 Copynumber: 4.0 Consensus size: 40
51559175 CGGAATACAA
*
51559185 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
51559225 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
51559265 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** *
51559305 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTA
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTA
51559343 ACCCTAATAC
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 100 0.98
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:51559325 original size:80 final size:80
Alignment explanation
Indices: 51559185--51559338 Score: 222
Period size: 80 Copynumber: 1.9 Consensus size: 80
51559175 CGGAATACAA
* *
51559185 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
51559250 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAGC
* * * *
51559265 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GTCACTAGCACAAT
1 CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACG--ACTAGCACAAA
51559328 TGCCTTCGGGT
64 TGCCTTCGGGT
51559339 CTTAACCCTA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.02
79 2 0.03
80 63 0.95
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAGC
Found at i:51564714 original size:24 final size:24
Alignment explanation
Indices: 51564471--51564712 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
51564461 GCAAAGACCA
51564471 TATGGCACTATGTGTGCG-TTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51564494 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51564518 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51564542 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51564566 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51564590 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51564614 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
51564638 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51564662 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
51564686 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
51564710 TAT
1 TAT
51564713 AGTCACATTC
Statistics
Matches: 212, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
23 18 0.08
24 194 0.92
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:51567985 original size:40 final size:40
Alignment explanation
Indices: 51567940--51568106 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
51567930 CGGAATATAA
51567940 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51567980 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51568020 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
51568060 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51568099 CCGGATAT
1 CCGGATAT
51568107 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51568090 original size:80 final size:79
Alignment explanation
Indices: 51567956--51568106 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
51567946 ATAATCACGT
*
51567956 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
51568021 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
51568036 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
51568099 CCGGATAT
64 CCGGATAT
51568107 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:51568955 original size:17 final size:19
Alignment explanation
Indices: 51568932--51568977 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
51568922 AAGAAGCATG
51568932 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
51568950 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
51568968 AATCATGCTC
1 AATCATGCTC
51568978 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:51575845 original size:119 final size:120
Alignment explanation
Indices: 51575647--51575882 Score: 402
Period size: 119 Copynumber: 2.0 Consensus size: 120
51575637 TGCAAGACCA
* * *
51575647 TATGGCACTATGTGTGCGGTTTACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGC
*
51575712 GATTCACTATGGCACTATGTGTGCGATTTACTATGGCACTA-GTGTGCGATTCAC
66 GATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTCAC
*
51575766 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGC
* *
51575831 GATTTACTATGGCACTATGTGTGCGATTTGCTATAGCACTATGTGTGCGATT
66 GATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
51575883 TGCTATAGTC
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
119 99 0.91
120 10 0.09
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (120 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGC
GATTCACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTCAC
Found at i:51575890 original size:24 final size:24
Alignment explanation
Indices: 51575647--51575888 Score: 396
Period size: 24 Copynumber: 10.1 Consensus size: 24
51575637 TGCAAGACCA
*
51575647 TATGGCACTATGTGTGCGGTTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575671 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575695 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51575719 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575743 TATGGCACTA-GTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575766 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
51575790 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575814 TATAGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
51575838 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
51575862 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
51575886 TAT
1 TAT
51575889 AGTCACATTC
Statistics
Matches: 208, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
23 22 0.11
24 186 0.89
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:51596401 original size:28 final size:27
Alignment explanation
Indices: 51596338--51596407 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51596328 ATAGTGAGTC
51596338 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51596365 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51596393 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51596408 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51600352 original size:22 final size:22
Alignment explanation
Indices: 51600324--51600388 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
51600314 GCAAATACGT
*
51600324 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
51600346 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
51600368 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
51600389 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:51601231 original size:27 final size:27
Alignment explanation
Indices: 51600888--51601223 Score: 309
Period size: 27 Copynumber: 12.4 Consensus size: 27
51600878 TTTCACCCTA
* * * *
51600888 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
51600915 CAAGGGTATTTCGGTAATTTTTCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
51600942 CAATGGTATTTCT-GTAATTTTTGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-T
* *
51600970 CAAGGGTATTTCT-ATAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
** *
51600997 CAAGGGTATTTAAGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
51601024 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
51601051 CGATGGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
51601078 CGAGGGTATTTTGGTAATATTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
51601105 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
51601132 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
51601158 CTAGGGGTATTTTGGTAACTTTGCTAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
51601186 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
51601213 CAAGGGTATTT
1 CAAGGGTATTT
51601224 CAGTAATTCT
Statistics
Matches: 259, Mismatches: 45, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
26 1 0.00
27 235 0.91
28 23 0.09
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:51610315 original size:40 final size:40
Alignment explanation
Indices: 51610270--51610436 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
51610260 CGGAATATAA
*
51610270 CCGGATTTAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
51610310 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
51610350 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * ** *
51610390 CCGGATATAATTTCCAGCATAGTTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
51610429 CCGGATAT
1 CCGGATAT
51610437 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
39 14 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51615910 original size:49 final size:47
Alignment explanation
Indices: 51615849--51616022 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 47
51615839 GAGATGTGTC
*
51615849 AGTGTAAGACCATGTCTAGGACATGGCATCACACAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCA-AC-GATATGTGAGAGCT
*
51615898 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTCGAT-T-TCGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCAA---CGATATGT-GAGAGCT
* * * * *
51615946 CAGTGTCAGACCATGTCTTGGACATGGCATCGAC-TTGATG-GATGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCAACGAT-ATGTGA-GAGCT
51615994 AGTGTAAGACCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
51616023 TGGTATCATA
Statistics
Matches: 105, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
45 1 0.01
46 3 0.03
47 30 0.29
48 3 0.03
49 64 0.61
50 3 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAACGATATGTGAGAGCT
Found at i:51615969 original size:98 final size:93
Alignment explanation
Indices: 51615802--51616022 Score: 261
Period size: 96 Copynumber: 2.3 Consensus size: 93
51615792 TTATTTGTGT
**
51615802 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGATGTGTCAGTGTAAGACCATGTC
51615865 TAGGACATGGCATCACACA-GATATGTGA-GA
66 TAGGACATGGCATC-CACATG--ATG-GATGA
* ** *
51615895 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTTCGATTTCGATAGTCAGTGTCAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGAT-G-T-GTCAGTGTAAGACCAT
* * *
51615960 GTCTTGGACATGGCATCGACTTGATGGATGA
63 GTCTAGGACATGGCATCCACATGATGGATGA
*
51615991 GCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
51616023 TGGTATCATA
Statistics
Matches: 111, Mismatches: 10, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
93 12 0.11
94 14 0.13
95 13 0.12
96 37 0.33
97 3 0.03
98 32 0.29
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (93 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTACGAGATGTGTCAGTGTAAGACCATGTC
TAGGACATGGCATCCACATGATGGATGA
Found at i:51617211 original size:21 final size:20
Alignment explanation
Indices: 51617187--51617226 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
51617177 GTTATAATGA
51617187 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTG-TGCCCTT
51617208 CCACACAGGCGTGTGCCCT
1 CCACACAGGCGTGTGCCCT
51617227 GTTTCAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACAGGCGTGTGCCCTT
Found at i:51623658 original size:46 final size:46
Alignment explanation
Indices: 51623481--51623841 Score: 215
Period size: 46 Copynumber: 7.6 Consensus size: 46
51623471 TTTGTGTGCT
* *
51623481 AGTGTAAGACATGTCTGGGACATGCATCTG-CCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTACGA-GATGAGAGCC
* * * *
51623527 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTA-CGAGATGAGAGCC
* * *
51623575 AGTGTAAGACATGTCTAGGACAAGCATCAGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACTACGAGATG-AGAGCC
* * * *
51623621 GGTGTAAGACATGTCTAGGACATGCATCGACTACGAGAT-A-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGAGAGCC
* *
51623665 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACAGATATGTGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTAC-GAGA--TGAGAGCC
* * ** * *
51623715 AGTGTATGACCATGTCTGGGACATGGCATCAGCCT-CGATTTCGATAGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GACTACGAGAT-GAGAGCC
* * *
51623764 AGTGTAAGACCATGTCTAGGACATGGCATTGACT---TGATGGATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAGAT-GA-GAGCC
*
51623811 AGTGTATGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
51623842 GCATCATACC
Statistics
Matches: 255, Mismatches: 40, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.04
45 18 0.07
46 68 0.27
47 62 0.24
48 27 0.11
49 33 0.13
50 33 0.13
51 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACTACGAGATGAGAGCC
Found at i:51625738 original size:40 final size:39
Alignment explanation
Indices: 51625680--51625861 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
51625670 GTTCAAAACA
* * ** * *
51625680 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
51625720 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
51625760 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
51625799 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
51625838 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
51625862 CTCGAACATT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:51625791 original size:39 final size:39
Alignment explanation
Indices: 51625710--51625861 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
51625700 TATGGTAACC
* * * *
51625710 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
51625750 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
51625789 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
51625828 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
51625862 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:51633727 original size:40 final size:39
Alignment explanation
Indices: 51633683--51633863 Score: 229
Period size: 39 Copynumber: 4.6 Consensus size: 39
51633673 GTTCAAAACA
* * ** * *
51633683 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
51633723 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
51633763 CCTTCGGGCTTAGCCCGGGTATCATAGCTTGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
51633802 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
51633841 CCTTC-GGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
51633864 CTCGAACATT
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 18 0.14
39 68 0.54
40 40 0.32
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:51633859 original size:38 final size:39
Alignment explanation
Indices: 51633713--51633863 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
51633703 TATGGTAACC
* * * *
51633713 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
51633753 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
*
51633792 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
51633831 CGCACAATTGCCTTC-GGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
51633864 CTCGAACATT
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 18 0.17
39 68 0.66
40 17 0.17
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:51647864 original size:7 final size:7
Alignment explanation
Indices: 51647854--51647878 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51647844 TGATGAATCG
51647854 TGAGGGA
1 TGAGGGA
51647861 TGAGGGA
1 TGAGGGA
51647868 TGAGGGA
1 TGAGGGA
51647875 TGAG
1 TGAG
51647879 TAGAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.56, T:0.16
Consensus pattern (7 bp):
TGAGGGA
Found at i:51649078 original size:84 final size:87
Alignment explanation
Indices: 51648989--51649160 Score: 323
Period size: 84 Copynumber: 2.0 Consensus size: 87
51648979 TTATATGGCT
51648989 TTCTAATTAAATTTCAAAGGTTATTTTTGTAAATGGTGTATTAATATATAATAAAATAAAGT-AA
1 TTCTAATTAAATTTCAAAGGTTATTTTTGTAAATGGTGTATTAATATATAATAAAATAAAGTAAA
51649053 A-AAAATGG-CATTATCATTCA
66 ACAAAATGGCCATTATCATTCA
51649073 TTCTAATTAAATTTCAAAGGTTATTTTTGTAAATGGTGTATTAATATATAATAAAATAAAGTAAA
1 TTCTAATTAAATTTCAAAGGTTATTTTTGTAAATGGTGTATTAATATATAATAAAATAAAGTAAA
51649138 ACAAAATGGCCATTATCATTCA
66 ACAAAATGGCCATTATCATTCA
51649160 T
1 T
51649161 CTTTTTGTGG
Statistics
Matches: 85, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
84 62 0.73
85 3 0.04
86 7 0.08
87 13 0.15
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (87 bp):
TTCTAATTAAATTTCAAAGGTTATTTTTGTAAATGGTGTATTAATATATAATAAAATAAAGTAAA
ACAAAATGGCCATTATCATTCA
Found at i:51650201 original size:43 final size:43
Alignment explanation
Indices: 51650025--51650204 Score: 143
Period size: 43 Copynumber: 4.2 Consensus size: 43
51650015 GAGATATCAC
* * * *
51650025 GTAAGACCCTGTCTGGGACAGTGGTATCGATATATGATTTCTT
1 GTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACGT
* * * * *
51650068 GTAAAACCAC-ATCTGGGAC-GTTGGCATGGAT-TTGAGATTTATGT
1 GTAAGACC-CTGTCTGGGACAG-TGGCATCGATATT-TGA-TTACGT
* * * * * * *
51650112 GTAAGGCCATGTCTGGGACATTGACATTG-TATTTAATTTCGT
1 GTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACGT
*
51650154 GTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACAT
1 GTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACGT
51650197 GTAAGACC
1 GTAAGACC
51650205 ACGTCTAGGA
Statistics
Matches: 101, Mismatches: 28, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
42 30 0.30
43 45 0.45
44 26 0.26
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
GTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTACGT
Found at i:51657049 original size:43 final size:43
Alignment explanation
Indices: 51656987--51657072 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
51656977 ATGAATTCGG
*
51656987 GAAGGTTCAGGTACATATGATACCTATGTGGTAGATGGTATTA
1 GAAGGTTCAGGTACATATGATACCTATGGGGTAGATGGTATTA
*
51657030 GAAGGTTCAGGTACGTATGATACCTATGGGGTAGATGGTATTA
1 GAAGGTTCAGGTACATATGATACCTATGGGGTAGATGGTATTA
51657073 TTCTTATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.29, C:0.09, G:0.30, T:0.31
Consensus pattern (43 bp):
GAAGGTTCAGGTACATATGATACCTATGGGGTAGATGGTATTA
Found at i:51658236 original size:30 final size:28
Alignment explanation
Indices: 51658182--51658240 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 28
51658172 TCTGAGCCTA
51658182 GGGGAAAAATCGTAATTCTGCAAAGGTTT
1 GGGGAAAAATCGTAATTCTGCAAA-GTTT
*
51658211 GGGGTAAAAAT-GTAATTTTGCCAAAGTTT
1 GGGG-AAAAATCGTAATTCTG-CAAAGTTT
51658240 G
1 G
51658241 AGTTTGGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (28 bp):
GGGGAAAAATCGTAATTCTGCAAAGTTT
Found at i:51661506 original size:37 final size:37
Alignment explanation
Indices: 51661447--51661592 Score: 229
Period size: 37 Copynumber: 3.9 Consensus size: 37
51661437 AGCTCAGACG
* *
51661447 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
51661484 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
51661521 TACTCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
51661558 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
51661593 ATATATTTCC
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:51661876 original size:47 final size:47
Alignment explanation
Indices: 51661797--51662366 Score: 847
Period size: 47 Copynumber: 12.1 Consensus size: 47
51661787 TATATATATT
* * * *
51661797 TCACATTGACCATTCAG-CTTCACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCA
* * *
51661844 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51661891 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
51661938 TCATATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
51661985 -CTACATTGGCCATTCGGCCTTATCACACATATGCATGCTGACATTCA
1 TC-ACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51662032 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
51662079 TCACATAGGCCATTCGGCCTTATCACATATATTCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
51662126 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51662173 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
51662220 TCACATAGGCCATTCGGCCTTATCACATATATGAAAGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
51662267 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
51662314 TCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
51662361 TCACAT
1 TCACAT
51662367 AAAATCCTAA
Statistics
Matches: 469, Mismatches: 51, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 464 0.99
48 4 0.01
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:51661978 original size:141 final size:141
Alignment explanation
Indices: 51661820--51662367 Score: 1015
Period size: 141 Copynumber: 3.9 Consensus size: 141
51661810 TCAGCTTCAC
51661820 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
1 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
*
51661885 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCATATAGGCCA
66 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
51661950 TTCGGCCTTAT
131 TTCGGCCTTAT
* *
51661961 CACATATATGCATGTTCATATTCACTACATTGGCCATTCGGCCTTATCACACATATGCATGCTGA
1 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
51662026 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
66 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
51662091 TTCGGCCTTAT
131 TTCGGCCTTAT
*
51662102 CACATATATTCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
1 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
51662167 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
66 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
51662232 TTCGGCCTTAT
131 TTCGGCCTTAT
* *
51662243 CACATATATGAAAGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
1 CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
* **
51662308 CATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATA
66 CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATA
51662368 AAATCCTAAA
Statistics
Matches: 395, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 395 1.00
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.32
Consensus pattern (141 bp):
CACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCA
CATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCA
TTCGGCCTTAT
Found at i:51662010 original size:25 final size:25
Alignment explanation
Indices: 51661982--51662057 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
51661972 ATGTTCATAT
51661982 TCACTACATTGGCCATTCGGCCTTA
1 TCACTACATTGGCCATTCGGCCTTA
* * * *
51662007 TCAC-ACATAT-G-CATGCTGACAT-
1 TCACTACAT-TGGCCATTCGGCCTTA
51662029 TCA-TCACATTGGCCATTCGGCCTTA
1 TCACT-ACATTGGCCATTCGGCCTTA
51662054 TCAC
1 TCAC
51662058 ATATATGCAT
Statistics
Matches: 36, Mismatches: 8, Indels: 13
0.63 0.14 0.23
Matches are distributed among these distances:
22 4 0.11
23 12 0.33
24 12 0.33
25 8 0.22
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (25 bp):
TCACTACATTGGCCATTCGGCCTTA
Found at i:51667251 original size:26 final size:26
Alignment explanation
Indices: 51667215--51667298 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
51667205 ACATGAATTC
51667215 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
51667241 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51667267 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
51667293 TTATCA
1 TTATCA
51667299 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51672997 original size:26 final size:26
Alignment explanation
Indices: 51672961--51673096 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
51672951 CATGATATTC
51672961 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
51672987 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51673013 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
51673039 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
51673065 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
51673091 TTATCA
1 TTATCA
51673097 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:51673486 original size:40 final size:40
Alignment explanation
Indices: 51673428--51673666 Score: 390
Period size: 40 Copynumber: 6.0 Consensus size: 40
51673418 TGGGGCGTTA
* * *
51673428 CATTTGTGCTAGTGACTATATCCGGGTTAAGTCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
*
51673468 CATTTGTGCGAGTTACTATATCCGGGTTAAGTCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
*
51673508 CATTTGTGCGAGTTACTATATCCGAGCTAAGTCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
51673548 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
51673588 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
** * *
51673628 CATTTGTGCGAGTTGTTATATCC-AGCTAAATCCCGAAGG
1 CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
51673667 TACTTGGGTT
Statistics
Matches: 190, Mismatches: 9, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 14 0.07
40 176 0.93
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
Found at i:51681447 original size:40 final size:40
Alignment explanation
Indices: 51681392--51681557 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
51681382 GGACTAAGAT
* *
51681392 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
51681432 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
*
51681472 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
* *
51681512 CCGAAGGCATTTGTGCGAGTTG-TTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTC
51681551 CCGAAGG
1 CCGAAGG
51681558 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 15 0.13
40 103 0.87
41 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTC
Found at i:51685258 original size:44 final size:44
Alignment explanation
Indices: 51685193--51685277 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
51685183 TCGATATCTC
* * *
51685193 AAAGTCCATTCTTATACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATTCTCATAACATGGCAATTAAAGAAGAATTGACGGA
* *
51685237 AAAGTCCATGT-TCATAACATGGCATTTAAAGAGGAATTGAC
1 AAAGTCCAT-TCTCATAACATGGCAATTAAAGAAGAATTGAC
51685278 AGTTAAGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 34 0.97
45 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (44 bp):
AAAGTCCATTCTCATAACATGGCAATTAAAGAAGAATTGACGGA
Found at i:51685431 original size:47 final size:47
Alignment explanation
Indices: 51685371--51685492 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
51685361 GTATTGGCAC
*
51685371 TAAGACAGGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
51685418 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
51685465 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
51685493 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:51685529 original size:54 final size:54
Alignment explanation
Indices: 51685465--51685678 Score: 216
Period size: 54 Copynumber: 4.0 Consensus size: 54
51685455 TGGCATTTGG
* * * *
51685465 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
1 TAAGGTAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
* * * *
51685519 TAAGGTAAGGAAATCATGTAAGACCATGTCAATACATGGCATTGATGAGTTACTA
1 TAAGGTAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTA
* ** * * *
51685574 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
1 TAAGG-TAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
* * * * * *
51685627 TAAGGCAAGGAAACCACGTAAGACCATGTCAAGAAATGGCAATGGTAAGTTC
1 TAAGGTAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
51685679 AAAAAGGAAA
Statistics
Matches: 134, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 4 0.03
53 39 0.29
54 46 0.34
55 41 0.31
56 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
TAAGGTAAGGAAACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA
Found at i:51685600 original size:55 final size:54
Alignment explanation
Indices: 51685479--51685667 Score: 229
Period size: 55 Copynumber: 3.5 Consensus size: 54
51685469 ATAAGGATAT
* * * *
51685479 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
* * **
51685533 CATGTAAGACCATGTCAATACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGAAAC
* *
51685588 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGAAAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
* * *
51685641 CACGTAAGACCATGTCAAGAAATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
51685668 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.04
53 31 0.27
54 34 0.30
55 41 0.36
56 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGAAAC
Found at i:51692691 original size:45 final size:45
Alignment explanation
Indices: 51692641--51692798 Score: 174
Period size: 45 Copynumber: 3.5 Consensus size: 45
51692631 ATACAAGAAA
* *
51692641 CGAGTAAGACCATGACTGAAAGATGTTATGACATCACGATTCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACAATTCTAT
* * * *
51692686 TGAGTAAGACCATGATTGAAAGACGTTATGGCAACACAATTCTAT
1 CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACAATTCTAT
* * * * *
51692731 CGAGTAAAACCAATG-CTGAAAGATGCTATGGCATCACAAATCAAA
1 CGAGTAAGACC-ATGACTGAAAGATGTTATGGCATCACAATTCTAT
* **
51692776 CGAATAAGACCATGGTTGAAAGA
1 CGAGTAAGACCATGACTGAAAGA
51692799 CACTGTGGCA
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
44 3 0.03
45 87 0.94
46 3 0.03
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (45 bp):
CGAGTAAGACCATGACTGAAAGATGTTATGGCATCACAATTCTAT
Found at i:51692808 original size:90 final size:90
Alignment explanation
Indices: 51692641--51692808 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
51692631 ATACAAGAAA
* * * * * ** *
51692641 CGAGTAAGACCATGACTGAAAGATGTTATGACATCACGATTCTATTGAGTAAGACCATGATTGAA
1 CGAGTAAAACCATGACTGAAAGATGCTATGACATCACAAATCAAACGAATAAGACCATGATTGAA
**
51692706 AGACGTTATGGCAACACAATTCTAT
66 AGACACTATGGCAACACAATTCTAT
* *
51692731 CGAGTAAAACCAATG-CTGAAAGATGCTATGGCATCACAAATCAAACGAATAAGACCATGGTTGA
1 CGAGTAAAACC-ATGACTGAAAGATGCTATGACATCACAAATCAAACGAATAAGACCATGATTGA
*
51692795 AAGACACTGTGGCA
65 AAGACACTATGGCA
51692809 TCAAGACAAG
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
90 61 0.95
91 3 0.05
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (90 bp):
CGAGTAAAACCATGACTGAAAGATGCTATGACATCACAAATCAAACGAATAAGACCATGATTGAA
AGACACTATGGCAACACAATTCTAT
Found at i:51699733 original size:24 final size:24
Alignment explanation
Indices: 51699675--51699742 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
51699665 GCAAAGATTT
*
51699675 TTATACTAAT-TAATG-TCAAATATA
1 TTATACTAATAT-ATGCT-AAACATA
*
51699699 TTATGCTAATATATGCTAAACATA
1 TTATACTAATATATGCTAAACATA
* *
51699723 TTATACTAATAAATACTAAA
1 TTATACTAATATATGCTAAA
51699743 TCTTTTAGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.47, C:0.10, G:0.04, T:0.38
Consensus pattern (24 bp):
TTATACTAATATATGCTAAACATA
Found at i:51702563 original size:41 final size:41
Alignment explanation
Indices: 51702506--51702587 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
51702496 TTTGCCACTT
*
51702506 CACTTAGTTCAGTTCTCAAACATGGTACATTATAATCAACG
1 CACTTAGTTCAGTTCTCAAACATGGTACACTATAATCAACG
51702547 CACTTAGTTCAGTTCTCAAACATGGTACACTATAATCAACG
1 CACTTAGTTCAGTTCTCAAACATGGTACACTATAATCAACG
51702588 GCATTCTTGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (41 bp):
CACTTAGTTCAGTTCTCAAACATGGTACACTATAATCAACG
Found at i:51709165 original size:40 final size:40
Alignment explanation
Indices: 51709109--51709311 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
51709099 CGGAATTTAA
* * *
51709109 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
51709149 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51709189 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * * *
51709229 CCGAATATAATAACTAGTACAATTGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51709268 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
51709308 CCGG
1 CCGG
51709312 TTATCATCCG
Statistics
Matches: 141, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 108 0.77
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51709303 original size:79 final size:80
Alignment explanation
Indices: 51709130--51709310 Score: 240
Period size: 79 Copynumber: 2.3 Consensus size: 80
51709120 TACTCGCTCG
* ** * * *
51709130 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAATAACTAGCACAAATGCCTTCGAGACTTAGCCCGGAT
* *
51709195 ATAGTAACTCGCACG
66 ATAGTAACTAGCACA
* *
51709210 AATGCCTTCGGGACTTAGCCCGAATATAATAACTAGTACAATTGCCTTCGAG-CTTAGCCCGGA-
1 AATGCCTTCGGGACTTAGCCCGAATATAATAACTAGCACAAATGCCTTCGAGACTTAGCCCGGAT
*
51709273 ATTAGTCACTAGCACA
66 A-TAGTAACTAGCACA
51709289 AATGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
51709311 GTTATCATCC
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 1 0.01
79 44 0.49
80 44 0.49
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAATAACTAGCACAAATGCCTTCGAGACTTAGCCCGGAT
ATAGTAACTAGCACA
Found at i:51713312 original size:50 final size:50
Alignment explanation
Indices: 51713237--51713350 Score: 210
Period size: 50 Copynumber: 2.3 Consensus size: 50
51713227 GAGCAAAATA
*
51713237 ATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTTG
1 ATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTGG
*
51713287 ATCTTGTATATTTGGCCATATAGGTATGTACATATGTGATGTTATATTGG
1 ATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTGG
51713337 ATCTTGTATATTCG
1 ATCTTGTATATTCG
51713351 ACCAGATGAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (50 bp):
ATCTTGTATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTGG
Found at i:51715647 original size:24 final size:24
Alignment explanation
Indices: 51715615--51715661 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
51715605 TTAGTGAAAA
*
51715615 AATTTGATAATTCCACTAACACTC
1 AATTAGATAATTCCACTAACACTC
*
51715639 AATTAGATAATTTCACTAACACT
1 AATTAGATAATTCCACTAACACT
51715662 ATTGATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.34
Consensus pattern (24 bp):
AATTAGATAATTCCACTAACACTC
Found at i:51721253 original size:40 final size:40
Alignment explanation
Indices: 51721170--51721322 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
51721160 TCGAATGATG
* *
51721170 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
51721210 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
51721250 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
51721291 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
51721323 CGCTATATTC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:51722224 original size:40 final size:40
Alignment explanation
Indices: 51722180--51722326 Score: 143
Period size: 40 Copynumber: 3.7 Consensus size: 40
51722170 CACAAGTACA
* * *** *
51722180 ATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACC
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACC
* *
51722220 ATTGCCTTTGGGTCTTAGCCCGGATATAACAACTCGCACG
1 ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACC
* * * **
51722260 AATGCCTTCGGGTCTTAGCCCGGACATAATC-ACTAGCATA
1 ATTGCCTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACC
* *
51722300 AATGCCTTCGGGACTTAGCCCGGATAT
1 ATTGCCTTCGGGTCTTAGCCCGGATAT
51722327 CATTCAAATG
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 89 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.28
Consensus pattern (40 bp):
ATTGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCACC
Found at i:51728445 original size:29 final size:29
Alignment explanation
Indices: 51728411--51728542 Score: 137
Period size: 29 Copynumber: 4.6 Consensus size: 29
51728401 TAATCGATCA
*
51728411 CGCACACTTAGTGCCAT-GTGATTT-AAGCT
1 CGCACACTTAGTGCCATACT--TTTCAAGCT
* * **
51728440 CGCACACATAGTGCCGTATA-ATTT-AAATT
1 CGCACACTTAGTGCC--ATACTTTTCAAGCT
51728469 CGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
51728498 TGCACACTTAGTGCCATACTTTTCAAGCT
1 CGCACACTTAGTGCCATACTTTTCAAGCT
*
51728527 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
51728543 ATCTTGTCAC
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 3 0.03
28 3 0.03
29 81 0.91
31 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACTTTTCAAGCT
Found at i:51733277 original size:40 final size:39
Alignment explanation
Indices: 51733166--51733328 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 39
51733156 CGGGATTTAA
* * * *
51733166 CCGGATACAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAA-TGCCTTCGGGTCTTAGC
*
51733206 CCGGAT-T---AACTTGCACAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
*
51733241 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATGCCTTCGGGTCTTAGC
* * *
51733281 CCGGACATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTCTTAGC
51733321 CCGGATAT
1 CCGGATAT
51733329 CATTCAAATG
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
35 22 0.21
36 9 0.09
39 8 0.08
40 65 0.62
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CCGGATATAACAACTAGCACAATGCCTTCGGGTCTTAGC
Found at i:51738617 original size:28 final size:27
Alignment explanation
Indices: 51738554--51738623 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
51738544 ATAGTGAGTC
*
51738554 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51738581 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51738609 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51738624 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51744969 original size:39 final size:39
Alignment explanation
Indices: 51744922--51745105 Score: 224
Period size: 39 Copynumber: 4.7 Consensus size: 39
51744912 AATGTTCGAG
*
51744922 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
51744961 TGATATCCGGGCTAAGCCCGAAGACAATTGGGCAAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
51745000 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* ** **
51745039 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCAAGTTA
** * *
51745079 CCATAACCGGGCTATGTCCCGAAGGCA
1 TGATATCCGGGCTAAG-CCCGAAGGCA
51745106 TTTGAACGAG
Statistics
Matches: 124, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
39 86 0.69
40 38 0.31
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
Found at i:51747815 original size:2 final size:2
Alignment explanation
Indices: 51747808--51747835 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51747798 CGGCTCTAGC
51747808 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51747836 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51748640 original size:40 final size:41
Alignment explanation
Indices: 51748543--51748651 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 41
51748533 TCGAATGATG
*
51748543 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
* * **
51748583 TCCAGACTAAGAT-CCGAAGGCATTTGTGCT-AGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAAA
*
51748623 TCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC
51748652 GAGCTATTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 48 0.83
41 9 0.16
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAA
Found at i:51756851 original size:34 final size:34
Alignment explanation
Indices: 51756808--51756874 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
51756798 TCGTCAAATG
51756808 CGATAGATTACTTGGGAAGCCTTTGTGGCTAATA
1 CGATAGATTACTTGGGAAGCCTTTGTGGCTAATA
51756842 CGATAGATTACTTGGGAAGCCTTTGTGGCTAAT
1 CGATAGATTACTTGGGAAGCCTTTGTGGCTAAT
51756875 CCTGTGGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (34 bp):
CGATAGATTACTTGGGAAGCCTTTGTGGCTAATA
Found at i:51756962 original size:25 final size:25
Alignment explanation
Indices: 51756858--51756971 Score: 92
Period size: 26 Copynumber: 4.5 Consensus size: 25
51756848 ATTACTTGGG
*
51756858 AAGCCTTTGTGGCTAATCCTGTGGAA
1 AAGCCTTTGTGGCTAATCTTGTGG-A
* *
51756884 AAACCTTTGTGGCTAATCTTATGGA
1 AAGCCTTTGTGGCTAATCTTGTGGA
* *
51756909 AAGCCCCTGTGGTGTG-TTATC-TG-GG-
1 AAG--CCT-TTGTG-GCTAATCTTGTGGA
*
51756934 AAGCCTTTATGGCTAATCTTGTGGA
1 AAGCCTTTGTGGCTAATCTTGTGGA
*
51756959 AAGCCTTGGTGGC
1 AAGCCTTTGTGGC
51756972 ATGTTATTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 17
0.70 0.12 0.18
Matches are distributed among these distances:
21 1 0.01
22 7 0.10
23 5 0.07
24 2 0.03
25 17 0.25
26 23 0.34
27 4 0.06
28 8 0.12
29 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (25 bp):
AAGCCTTTGTGGCTAATCTTGTGGA
Found at i:51761018 original size:23 final size:22
Alignment explanation
Indices: 51760987--51761050 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
51760977 AAGAATAACA
*
51760987 ATAATGCATATATAAGGGTTCGT
1 ATAAAGCATATAT-AGGGTTCGT
* *
51761010 ATAAAGCATACATAGAGTTCGT
1 ATAAAGCATATATAGGGTTCGT
* * *
51761032 ACATAGCATGTATAGGGTT
1 ATAAAGCATATATAGGGTT
51761051 TGCATAAGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
22 22 0.67
23 11 0.33
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (22 bp):
ATAAAGCATATATAGGGTTCGT
Found at i:51765204 original size:21 final size:20
Alignment explanation
Indices: 51765162--51765205 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
51765152 CAAAATTACA
* *
51765162 TTTACGGACCTTAAAACGAG
1 TTTACAGACCTTAAAAAGAG
*
51765182 TTTACAGAGCCTTAAAAATAG
1 TTTACAGA-CCTTAAAAAGAG
51765203 TTT
1 TTT
51765206 GGGAAAAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (20 bp):
TTTACAGACCTTAAAAAGAG
Found at i:51767066 original size:47 final size:47
Alignment explanation
Indices: 51767002--51767112 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
51766992 GACATTGAGT
*
51767002 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
51767049 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
51767096 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
51767113 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Done.