Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 17 of 318
Found at i:4516546 original size:19 final size:19
Alignment explanation
Indices: 4516500--4516547 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
4516490 ATATATATTT
4516500 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
4516518 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
4516537 TAAATTTTATT
1 TAAATTTTATT
4516548 CATATTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:4516623 original size:42 final size:42
Alignment explanation
Indices: 4516571--4516653 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
4516561 TATTTTTATT
*
4516571 TTATCTTTTAGTAGTTTGTTAGAACAAGGGAACTATTTTCCC
1 TTATCTTTTAGTAGTTTATTAGAACAAGGGAACTATTTTCCC
* *
4516613 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCC
1 TTATCTTTTAGTAGTTTATTAGAACAAGGGAACTATTTTCC
4516654 TAATTAGAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (42 bp):
TTATCTTTTAGTAGTTTATTAGAACAAGGGAACTATTTTCCC
Found at i:4519274 original size:22 final size:22
Alignment explanation
Indices: 4519231--4519275 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
4519221 TTTTTAAGAT
*
4519231 TTATATTTTGATAAAAGGAAAA
1 TTATATTTTGATAAAAGAAAAA
* *
4519253 TTATATTTTTTATAAAAAAAAAA
1 TTATA-TTTTGATAAAAGAAAAA
4519276 CGCCACACGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (22 bp):
TTATATTTTGATAAAAGAAAAA
Found at i:4526307 original size:19 final size:20
Alignment explanation
Indices: 4526261--4526308 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
4526251 ATCACATGTT
*
4526261 AAATATTTTAATTCATTGTA
1 AAATATTTTTATTCATTGTA
*
4526281 AAA-A-TTTTATTTATT-TA
1 AAATATTTTTATTCATTGTA
4526298 AAATATTTTTA
1 AAATATTTTTA
4526309 AGAATGCTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 5 0.21
18 10 0.42
19 6 0.25
20 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
AAATATTTTTATTCATTGTA
Found at i:4526334 original size:2 final size:2
Alignment explanation
Indices: 4526327--4526355 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4526317 TTAATTATTA
4526327 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4526356 CTAATTGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4527072 original size:41 final size:40
Alignment explanation
Indices: 4526993--4527080 Score: 106
Period size: 41 Copynumber: 2.2 Consensus size: 40
4526983 CATATATTTA
* ***
4526993 AAATTTAATATAAATACTTTAAATATTTTTATATTTAATAT
1 AAATTTAATATAAATACTTTAAATACTCAAATATTTAAT-T
*
4527034 AAATTTAATATAAATACTTTAAATGCTCAAAT-TATTAATT
1 AAATTTAATATAAATACTTTAAATACTCAAATAT-TTAATT
4527074 AAATTTA
1 AAATTTA
4527081 CGAAATAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 9 0.22
41 32 0.78
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.47
Consensus pattern (40 bp):
AAATTTAATATAAATACTTTAAATACTCAAATATTTAATT
Found at i:4528123 original size:27 final size:27
Alignment explanation
Indices: 4528093--4528147 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
4528083 TACTTCTTTT
4528093 TCAAGAATCAATCTGTCCTCTTGTCCA
1 TCAAGAATCAATCTGTCCTCTTGTCCA
4528120 TCAAGAATCAATCTGTCCTCTTGTCCA
1 TCAAGAATCAATCTGTCCTCTTGTCCA
4528147 T
1 T
4528148 TTTGGATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (27 bp):
TCAAGAATCAATCTGTCCTCTTGTCCA
Found at i:4533504 original size:32 final size:33
Alignment explanation
Indices: 4533463--4533547 Score: 120
Period size: 32 Copynumber: 2.6 Consensus size: 33
4533453 AATCTAAATA
4533463 TTTTAAAGTGCTCAAATAAGGA-CCAAAACTTT
1 TTTTAAAGTGCTCAAATAAGGAGCCAAAACTTT
* *
4533495 TTTTAAAGTGCTCAAATAA-GAGTCAAACCTTT
1 TTTTAAAGTGCTCAAATAAGGAGCCAAAACTTT
* *
4533527 TTTAAAAGTGTTCAAATAAGG
1 TTTTAAAGTGCTCAAATAAGG
4533548 GCTTCTCAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
31 2 0.04
32 44 0.94
33 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (33 bp):
TTTTAAAGTGCTCAAATAAGGAGCCAAAACTTT
Found at i:4535798 original size:9 final size:9
Alignment explanation
Indices: 4535784--4535808 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4535774 GAAATATTTA
4535784 TTTTAATAT
1 TTTTAATAT
4535793 TTTTAATAT
1 TTTTAATAT
4535802 TTTTAAT
1 TTTTAAT
4535809 GTATTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTAATAT
Found at i:4537453 original size:2 final size:2
Alignment explanation
Indices: 4537446--4537480 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4537436 TCCTCTTCAT
4537446 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4537481 TTTACAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4541468 original size:21 final size:21
Alignment explanation
Indices: 4541439--4541538 Score: 53
Period size: 21 Copynumber: 4.9 Consensus size: 21
4541429 TAAGAATGTT
*
4541439 ATTAAATTATATTTAATAATA
1 ATTATATTATATTTAATAATA
* * * *
4541460 ATTATATTAAAATATGATTA-A
1 ATTATATT-ATATTTAATAATA
* ** *
4541481 ATTAT-TTAT-TTTTATTTTT
1 ATTATATTATATTTAATAATA
*
4541500 ATTAAATTATATTTAATAATA
1 ATTATATTATATTTAATAATA
** *
4541521 ATCCTATTAAATTTAATA
1 ATTATATTATATTTAATA
4541539 CCCATATATA
Statistics
Matches: 56, Mismatches: 19, Indels: 8
0.67 0.23 0.10
Matches are distributed among these distances:
18 5 0.09
19 5 0.09
20 6 0.11
21 33 0.59
22 7 0.12
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (21 bp):
ATTATATTATATTTAATAATA
Found at i:4547409 original size:21 final size:22
Alignment explanation
Indices: 4547370--4547410 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
4547360 AAGGCTTGCT
* *
4547370 AAGAAAAATAGATGGAGAAAAG
1 AAGAAAAATAAATGAAGAAAAG
4547392 AAGAAAAA-AAATGAAGAAA
1 AAGAAAAATAAATGAAGAAA
4547411 TATAGAAAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (22 bp):
AAGAAAAATAAATGAAGAAAAG
Found at i:4555351 original size:130 final size:130
Alignment explanation
Indices: 4555163--4555567 Score: 627
Period size: 130 Copynumber: 3.1 Consensus size: 130
4555153 TTAAAATTTT
* * *
4555163 TTTAAAACGAAGGCAATGTTCGGTGTTTTGGAATTCGGGGAATCGTGCTCTATCGTGCTGGGTTG
1 TTTAAAACGAAGACAATGTTCGGTGTTTGGGAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTG
4555228 CAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCAAAATTC
66 CAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCAAAATTC
* * *
4555293 TTTAAAATGAAGGCAATGTTCGGTGTTTGGGAATTCGGGGAATCGTGCCCTATAGTGCTGGGTTG
1 TTTAAAACGAAGACAATGTTCGGTGTTTGGGAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTG
* * * *
4555358 CAATTTCTCGTTTGTTCAAAATAATCGAATATTTCTTTAGAATTTCACTCATGTTTTAAAAATTA
66 CAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCAAAATTC
* * *
4555423 TTTAAAACGAAGACAATGTTCGATGTTTGGGAATTCGGGGAATCGTACCCTATCGTGCCGGGTTG
1 TTTAAAACGAAGACAATGTTCGGTGTTTGGGAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTG
* * * *
4555488 CAATCTCCCGTTTGTTCAAAATAACCGAATATTCCTTTAGAATTTCACTCATGTCTTCTAAA-TC
66 CAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCAAAATTC
*
4555552 -TTAAAA-TAAGACAATG
1 TTTAAAACGAAGACAATG
4555568 CTCAAAGTTT
Statistics
Matches: 252, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
127 9 0.04
128 6 0.02
129 1 0.00
130 236 0.94
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (130 bp):
TTTAAAACGAAGACAATGTTCGGTGTTTGGGAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTG
CAATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCATGTTTTCAAAATTC
Found at i:4557796 original size:30 final size:30
Alignment explanation
Indices: 4557751--4557810 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
4557741 ATTTAATACG
*
4557751 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
4557781 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
4557811 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:4563048 original size:21 final size:21
Alignment explanation
Indices: 4563024--4563065 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4563014 TCATCAGATC
*
4563024 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
4563045 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
4563066 AGGTAGAGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:4569298 original size:30 final size:30
Alignment explanation
Indices: 4569264--4569320 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
4569254 AGGCACTTCT
*
4569264 ACACGGGT-GATCCACATGCCCGTGTGTGAC
1 ACACGGGTAGA-CCACACGCCCGTGTGTGAC
4569294 ACACGGGTAGACCACACGCCCGTGTGT
1 ACACGGGTAGACCACACGCCCGTGTGT
4569321 TATGGCCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (30 bp):
ACACGGGTAGACCACACGCCCGTGTGTGAC
Found at i:4571120 original size:6 final size:6
Alignment explanation
Indices: 4571111--4571161 Score: 84
Period size: 6 Copynumber: 8.5 Consensus size: 6
4571101 TAGAAATGGG
* *
4571111 AATGGA AATGAA AATGAA AATGAA AATGAA AATGAA AATGGA AATGAA
1 AATGAA AATGAA AATGAA AATGAA AATGAA AATGAA AATGAA AATGAA
4571159 AAT
1 AAT
4571162 TTGCAATCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.18
Consensus pattern (6 bp):
AATGAA
Found at i:4571132 original size:18 final size:18
Alignment explanation
Indices: 4571111--4571161 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
4571101 TAGAAATGGG
4571111 AATGGAAATGAAAATGAA
1 AATGGAAATGAAAATGAA
*
4571129 AATGAAAATGAAAATGAA
1 AATGGAAATGAAAATGAA
4571147 AATGGAAATGAAAAT
1 AATGGAAATGAAAAT
4571162 TTGCAATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.18
Consensus pattern (18 bp):
AATGGAAATGAAAATGAA
Found at i:4574592 original size:23 final size:23
Alignment explanation
Indices: 4574560--4574606 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
4574550 TTGTTAAATG
4574560 AACAAATTTGACAACGAAGATTC
1 AACAAATTTGACAACGAAGATTC
* *
4574583 AACAACTTTGACAAGGAAGATTC
1 AACAAATTTGACAACGAAGATTC
4574606 A
1 A
4574607 GCATATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.17, G:0.15, T:0.21
Consensus pattern (23 bp):
AACAAATTTGACAACGAAGATTC
Found at i:4584384 original size:17 final size:17
Alignment explanation
Indices: 4584362--4584454 Score: 77
Period size: 17 Copynumber: 5.3 Consensus size: 17
4584352 ACTAAACCGA
4584362 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
4584379 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
4584396 TTATTTGCCACTAACTCCATCACC
1 -------CCACTAACTCCATCACC
4584420 CCACTAA----ATCACC
1 CCACTAACTCCATCACC
* *
4584433 CCACTAACCCCATTACC
1 CCACTAACTCCATCACC
4584450 CCACT
1 CCACT
4584455 TGCCTAGGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 22
0.74 0.01 0.25
Matches are distributed among these distances:
13 13 0.20
17 34 0.53
24 17 0.27
ACGTcount: A:0.29, C:0.48, G:0.01, T:0.22
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:4584432 original size:13 final size:13
Alignment explanation
Indices: 4584414--4584439 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4584404 CACTAACTCC
4584414 ATCACCCCACTAA
1 ATCACCCCACTAA
4584427 ATCACCCCACTAA
1 ATCACCCCACTAA
4584440 CCCCATTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (13 bp):
ATCACCCCACTAA
Found at i:4584958 original size:21 final size:22
Alignment explanation
Indices: 4584931--4584974 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
4584921 TTTTATGAAC
* *
4584931 ATTTTTTTAAATATTATATTATT
1 ATTTTTATATATATTAT-TTATT
4584954 ATTTTTATATATATTATTTAT
1 ATTTTTATATATATTATTTAT
4584975 ATTAAGCTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
ATTTTTATATATATTATTTATT
Found at i:4585021 original size:2 final size:2
Alignment explanation
Indices: 4585014--4585044 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4585004 TTTATTCGTG
4585014 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4585045 TGTTTTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4585069 original size:21 final size:20
Alignment explanation
Indices: 4585032--4585070 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
4585022 TATATATATA
*
4585032 TATATATATATATTGTTTTG
1 TATATATATATACTGTTTTG
*
4585052 TATATCATTTATACTGTTT
1 TATAT-ATATATACTGTTT
4585071 CGTTACAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TATATATATATACTGTTTTG
Found at i:4585240 original size:2 final size:2
Alignment explanation
Indices: 4585233--4585257 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4585223 TTCCTTTTAA
4585233 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
4585258 ATTTATGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4587464 original size:19 final size:19
Alignment explanation
Indices: 4587440--4587485 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
4587430 CTTACTTTCT
*
4587440 TTTGCATT-CATTTCATGCA
1 TTTGCATTGCATTGCAT-CA
4587459 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTGCATCA
*
4587478 TGTGCATT
1 TTTGCATT
4587486 AAACTTCACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:4588873 original size:2 final size:2
Alignment explanation
Indices: 4588866--4588899 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4588856 TATTTCAGCC
4588866 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4588900 CTAGCAGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4593140 original size:28 final size:27
Alignment explanation
Indices: 4593074--4593143 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
4593064 ATAGTGAGTC
*
4593074 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
* *
4593101 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
4593129 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
4593144 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:4593216 original size:42 final size:42
Alignment explanation
Indices: 4593152--4593258 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
4593142 CTGTACAAAT
* *
4593152 TTTAAACCCGTACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
4593194 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
4593236 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
4593259 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:4609743 original size:64 final size:65
Alignment explanation
Indices: 4609619--4609744 Score: 182
Period size: 64 Copynumber: 2.0 Consensus size: 65
4609609 TCATTCATAA
* * * * * *
4609619 CGCATCTAGTTAGGAGCATTTTGGTTCATTTTGATCATAGCATCCTAATTGTTTGACATAAGGAT
1 CGCATCTAGTTAGGAGCAGTTTGATTCATTTCGATCATAGCATCCTAACTATTCGACATAAGGAT
*
4609684 CGCATCTAGTTAGGAGC-GTTTGATTCATTTCGATCATAGCATCCTAACTATTCGGCATAAG
1 CGCATCTAGTTAGGAGCAGTTTGATTCATTTCGATCATAGCATCCTAACTATTCGACATAAG
4609745 CATACATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
64 37 0.69
65 17 0.31
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (65 bp):
CGCATCTAGTTAGGAGCAGTTTGATTCATTTCGATCATAGCATCCTAACTATTCGACATAAGGAT
Found at i:4610055 original size:133 final size:133
Alignment explanation
Indices: 4609820--4610268 Score: 639
Period size: 133 Copynumber: 3.4 Consensus size: 133
4609810 GATACAGGTT
* * *
4609820 TTATCTTCCTGAAGTGGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTATCTTCCTGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * * *
4609885 GGAGCAGATCAAAAATTGCGAGTTTTATCTCTATGTATCGGCTATGGAGCAGATTTTAGCCACCA
66 GGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCA
*
4609950 GTT
131 GTC
* * * *
4609953 TTATCTTCCTAAAGTTGTAAGAAGCAGACTAAAAATTACAGATCTTATTTCCATGTATCGACTAT
1 TTATCTTCCTGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* *
4610018 GGAGCAGATCAGAAATGGTGAGTCTTATCTCCATGTATTGGCTATGGAGCAGATTTTAGCCACCA
66 GGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCA
*
4610083 GCC
131 GTC
* * * *
4610086 TTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTATATATCTTATCTCCATGTATTGGCTAT
1 TTATCTTCCTGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* *
4610151 GGAGCATATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATAGAGCAGATTTTAGCCACCA
66 GGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCA
*
4610216 CTC
131 GTC
** * * *
4610219 TTATCTTCCTGAAGTTGCTGTGGAGCAGACTAAAGA-TACAGGTCTTATCT
1 TTATCTTCCTGAAGTTGC-AAGAAGCAGACTAAAAATTACAGATCTTATCT
4610269 TCCTGAAGTT
Statistics
Matches: 278, Mismatches: 37, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
133 266 0.96
134 12 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (133 bp):
TTATCTTCCTGAAGTTGCAAGAAGCAGACTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCACCA
GTC
Found at i:4610327 original size:176 final size:177
Alignment explanation
Indices: 4610085--4610444 Score: 541
Period size: 176 Copynumber: 2.0 Consensus size: 177
4610075 AGCCACCAGC
* * * * *
4610085 CTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTATATATCTTATCTCCATGTATTGGCTA
1 CTTATCTTCCTGAAGTTACAAGAAGCAGACTGAAAATTACAGATATTATCTCCATGTATCGGCTA
* *
4610150 TGGAGCATATCAGAAATGGCG-AGTCTTATCTCCATGTATCGGCTATAGAGCAGATTTTAGCCAC
66 TGGAGCAGATCAGAAATGG-GAAGTCTTATCTCCATGTATCGACTATAGAGCAGATTTTAGCCAC
* * *
4610214 CA-CTCTTATCTTCCTGAAGTTGCTGTGGAGCAGACT-AAAGA-TACAGGT
130 CAGC-CTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAAA-ATTACAGAT
*
4610262 CTTATCTTCCTGAAGTTACAGGAA-CAGACTGAAAATTACAGATATTATCTCCATGTATCGGCTA
1 CTTATCTTCCTGAAGTTACAAGAAGCAGACTGAAAATTACAGATATTATCTCCATGTATCGGCTA
*
4610326 TGGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACC
66 TGGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATAGAGCAGATTTTAGCCACC
4610391 AGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
131 AGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
4610438 CTTATCT
1 CTTATCT
4610445 CCATGTATCG
Statistics
Matches: 167, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
175 11 0.07
176 133 0.80
177 23 0.14
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (177 bp):
CTTATCTTCCTGAAGTTACAAGAAGCAGACTGAAAATTACAGATATTATCTCCATGTATCGGCTA
TGGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATAGAGCAGATTTTAGCCACC
AGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
Found at i:4610459 original size:133 final size:132
Alignment explanation
Indices: 4610262--4610710 Score: 713
Period size: 133 Copynumber: 3.4 Consensus size: 132
4610252 AGATACAGGT
*
4610262 CTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATATTATCTCCATGTATCGGCTAT
1 CTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * *
4610327 GGAGCAGATCAGAAATGG-GAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACC
66 GGAGTAGATCAGAAATGGCG-AGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACC
4610391 AGC
130 AGC
*
4610394 CTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 CTTATCTTCCTGAAGTTACAGGAA-CAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
*
4610459 TGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTTGATTTTAGCCACC
65 TGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACC
4610524 AGC
130 AGC
*
4610527 CTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTC
1 CTTATCTTCCTGAAGTTACAGGAA-CAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
*
4610592 TAGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACC
65 TGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACC
*
4610657 AGT
130 AGC
* * * * *
4610660 CTTATCTCCCTGAAGTTGCAGCGGAACAAACTGAAGA-TACAGGTCTTATCT
1 CTTATCTTCCTGAAGTTACA--GGAACAGACTGAAAATTACAGATCTTATCT
4610711 TCCTGAAGTT
Statistics
Matches: 297, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
132 23 0.08
133 260 0.88
134 10 0.03
135 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (132 bp):
CTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACCA
GC
Found at i:4610509 original size:45 final size:45
Alignment explanation
Indices: 4610437--4610646 Score: 159
Period size: 45 Copynumber: 4.7 Consensus size: 45
4610427 AAATTACAGA
4610437 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAG
* * ** *
4610482 TCTTATCTCCATGTATCGGCTATGGAGTTGATTTTAGCCA---CCAG
1 TCTTATCTCCATGTATCGGCTATGGAGTAGA--TCAGAAATGGCGAG
* * * * * * **
4610526 CCTTATCTTCC-TG-A--AGTTACAGGAAGCAGA-CTGAAAATTAC-AG
1 TCTTATC-TCCATGTATCGGCTA-TGG-AGTAGATCAG-AAATGGCGAG
* *
4610569 ATCTTATCTCCATGTATCGGCTCTAGAGTAGATCAGAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAG
4610615 TCTTATCTCCATGTATCGGCTATGGAGTAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGTAGAT
4610647 TTTAGCCACC
Statistics
Matches: 122, Mismatches: 27, Indels: 32
0.67 0.15 0.18
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 2 0.02
43 10 0.08
44 20 0.16
45 74 0.61
46 5 0.04
47 6 0.05
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAG
Found at i:4610674 original size:442 final size:438
Alignment explanation
Indices: 4609806--4611249 Score: 2037
Period size: 442 Copynumber: 3.3 Consensus size: 438
4609796 AGTGTATCAT
* *
4609806 TAAAGATACAGGTTTTATCTTCCTGAAGTGGCAGGAAGCAGACTGAAAATTACAGATCTTATCTC
1 TAAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAA-CAGACTGAAAATTACAGATCTTATCTC
* * * *
4609871 CATGTATCGGCTATGGAGCAGATCAAAAATTGCGAGTTTTATCTCTATGTATCGGCTATGGAGCA
65 CATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCA
** * * * *
4609936 GATTTTAGCCACCAGTTTTATCTTCCTAAAGTTGTAAGAAGCAGACTAAAAATTACAGATCTTAT
130 GATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTAT
* * * *
4610001 TTCCATGTATCGACTATGGAGCAGATCAGAAATGGTGAGTCTTATCTCCATGTATTGGCTATGGA
195 CTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
* * * *
4610066 GCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTATATATCT
260 GCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCT
*
4610131 TATCTCCATGTATTGGCTATGGAGCATATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
325 TATCTCCATGTA-TGGCT-TAGAG-A-ATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
* * * *
4610196 AGAGCAGATTTTAGCCACCACTCTTATCTTCCTGAAGTTGCTGTGGAGCAGAC
386 GGAGCAGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* *
4610249 TAAAGATACAGGTCTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATATTATCTCC
1 TAAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAACAGACTGAAAATTACAGATCTTATCTCC
*
4610314 ATGTATCGGCTATGGAGCAGATCAGAAATGG-GAAGTCTTATCTCCATGTATCGACTATGGAGCA
66 ATGTATCGGCTATGGAGCAGATCAAAAATGGCG-AGTCTTATCTCCATGTATCGACTATGGAGCA
4610378 GATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTAT
130 GATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTAT
*
4610443 CTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
195 CTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
**
4610508 GTTGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCT
260 GCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCT
4610573 TATCTCCATGTATCGGCTCTAGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
325 TATCTCCATGTAT-GGCT-TAGAG-A-ATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
* * * *
4610638 GGAGTAGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTGCAGCGGAACAAAC
386 GGAGCAGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* *
4610691 TGAAGATACAGGTCTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAATTACAGATCTTATCTC
1 TAAAGATACAGGTCTTATCTTCCTGAAGTTGCAGG-AACAGACTGAAAATTACAGATCTTATCTC
* * *
4610756 CATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTTCATGTATCTACTATGGAGCA
65 CATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCA
4610821 GATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTAT
130 GATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTAT
*
4610886 CTTCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
195 CTCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGA
*** *** * * * * *** ***
4610951 GCAGATCAAAGATGGCGAGTCTTATC-TCCATGTATCAGCTA-TGG-AGCAGA-TTTTAGCCACC
260 GCAGATTTTAG-CCACCAGCCTTATCTTCC-TG-A--AGTTACAGGAAGCAGACTGAAAATTA-C
* * * *
4611012 AG-TCTTATCTCCCTG-A-AG-TTACA-AATCAGAAATAGCGAGTCTTATCTCCATGTATCGGCT
319 AGATCTTATCTCCATGTATGGCTTAGAGAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCT
*
4611072 ATGGAGCAGATTTTAACCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
384 ATGGAGCAGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
* **
4611127 TGAAGATACAGGTCTTATCTT-CTGAAGTTGCAAAAAACAGACTGAAAATTACAGATCTTATCTC
1 TAAAGATACAGGTCTTATCTTCCTGAAGTTGC-AGGAACAGACTGAAAATTACAGATCTTATCTC
* * *
4611191 CATGTATCGACTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTAT
65 CATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTAT
4611250 CTCCATGTAT
Statistics
Matches: 906, Mismatches: 84, Indels: 30
0.89 0.08 0.03
Matches are distributed among these distances:
435 91 0.10
436 107 0.12
437 1 0.00
439 3 0.00
440 1 0.00
441 3 0.00
442 398 0.44
443 259 0.29
444 27 0.03
445 10 0.01
446 2 0.00
447 4 0.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (438 bp):
TAAAGATACAGGTCTTATCTTCCTGAAGTTGCAGGAACAGACTGAAAATTACAGATCTTATCTCC
ATGTATCGGCTATGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAG
ATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATC
TCCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAG
CAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCTT
ATCTCCATGTATGGCTTAGAGAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGC
AGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
Found at i:4610706 original size:44 final size:44
Alignment explanation
Indices: 4610658--4610756 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 44
4610648 TTAGCCACCA
* *
4610658 GTCTTATCTCCCTGAAGTTGCAGCGGAACAAACTGAAGA-TACAG
1 GTCTTATCTCCCTGAAGTTGCAG-GAAACAAACTGAAAATTACAG
* * *
4610702 GTCTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAATTACAG
1 GTCTTATCTCCCTGAAGTTGCAGGAAACAAACTGAAAATTACAG
*
4610746 ATCTTATCTCC
1 GTCTTATCTCC
4610757 ATGTATCGGC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 12 0.26
44 35 0.74
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTGCAGGAAACAAACTGAAAATTACAG
Found at i:4610716 original size:177 final size:175
Alignment explanation
Indices: 4610527--4611031 Score: 671
Period size: 177 Copynumber: 2.8 Consensus size: 175
4610517 AGCCACCAGC
*
4610527 CTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTC
1 CTTATCTTCCTGAAGTTA-AGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * *
4610592 TAGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCACC
65 TGGAGTAGATCA-AAATGGCGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCACC
* *
4610657 AGTCTTATCTCCCTGAAGTTGCAGCGGAA-CAAACTGAAGA-TACAGGT
129 AGTCTTATCTCCCTGAAGTTGCA--GGAAGCAAACTGAAAATTACAGAT
* *
4610704 CTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 CTTATCTTCCTGAAGTT-AAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
*
4610769 TGGAGTAGATCAAAAATGGCGAGTCTTATCTTCATGTATCTA-CTATGGAGCAGATTTTAGCCAC
65 TGGAGTAGATC-AAAATGGCGAGTCTTATCTCCATGTATC-AGCTATGGAGCAGATTTTAGCCAC
* * *
4610833 CAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGAT
128 CAGTCTTATCTCCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAGAT
* * * * * **
4610881 CTTATCTTCATGTATCGGCTATGG-AGCAGA-TCAGAAATGGC-GAGTCTTATCTCCATGTATCG
1 CTTATCTTCCTG-A--AGTTAAGGAAGCAGACTGA-AAATTACAGA-TCTTATCTCCATGTATCG
*
4610943 GCTATGGAGCAGATCAAAGATGGCGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGC
61 GCTATGGAGTAGATCAAA-ATGGCGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGC
4611008 CACCAGTCTTATCTCCCTGAAGTT
125 CACCAGTCTTATCTCCCTGAAGTT
4611032 ACAAATCAGA
Statistics
Matches: 291, Mismatches: 25, Indels: 23
0.86 0.07 0.07
Matches are distributed among these distances:
175 4 0.01
176 9 0.03
177 165 0.57
178 109 0.37
179 2 0.01
180 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (175 bp):
CTTATCTTCCTGAAGTTAAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GGAGTAGATCAAAATGGCGAGTCTTATCTCCATGTATCAGCTATGGAGCAGATTTTAGCCACCAG
TCTTATCTCCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAGAT
Found at i:4610775 original size:310 final size:310
Alignment explanation
Indices: 4609995--4611249 Score: 1172
Period size: 310 Copynumber: 4.1 Consensus size: 310
4609985 AAATTACAGA
* * ** * * *
4609995 TCTTATTTCCATGTATCGACTATGGAGCAGA-TCAGAAATGGTGAGTCTTATCTCCATGTATTGG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTCAGAAA--GCAAGTCTTATCTCCATGAATCGA
* * * * ** * *
4610059 CTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAAGAAGCAGACTGAAAATTA
64 CTACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTA
* * * * *
4610124 TATATCTTATCTCCATGTATTGGCTATGGAGCATATCAGAAATGGCGAGTCTTATCTCCATGTAT
129 CAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTAT
* * *
4610189 CGGCTATAGAGCAGATTTTAGCCACCA-CTCTTATCTTCCTGAAGTTGCTGTGGAGCAGACT-AA
194 CGGCTATGGAGCAGATTTTAGCCACCAGC-CTTATCTTCCTGAAGTTGCAG-GAAGCAGACTGAA
* * * * * **
4610252 AGA-TACAGGTCTTATCTTCC-TG-A--AGTTAC-AGGAACAGA-CTGAAAATTAC-AG
257 A-ATTACAGATCTTATC-TCCATGTATCGGCT-CTA-GAGCAGATCAG-AAATGGCGAG
* * *
4610303 ATATTATCTCCATGTATCGGCTATGGAGCAGA-TCAGAAATGGGAAGTCTTATCTCCATGTATCG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATTCAGAAA--GCAAGTCTTATCTCCATGAATCG
* * * * ** *
4610367 ACTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATT
63 ACTACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATT
4610432 ACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTA
128 ACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTA
** *
4610497 TCGGCTATGGAGTTGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAA
193 TCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAA
*
4610562 ATTACAGATCTTATCTCCATGTATCGGCTCTAGAGTAGATCAGAAATGGCGAG
258 ATTACAGATCTTATCTCCATGTATCGGCTCTAGAGCAGATCAGAAATGGCGAG
* * ** * * *
4610615 TCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCCA-CCAGTCTTATCTCCCTGAAGTTG-
1 TCTTATCTCCATGTATCGGCTATGGAGCAGA-TTCAGAAAGCAAGTCTTATCTCCATGAA-TCGA
* * * *
4610678 C-AGCGGAACAAACTGAAGATA-CAGGTCTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAAT
64 CTA-CGGAACAAACTGAAGACACCA-GCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAT
* *
4610741 TACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTTCATGT
127 TACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGT
**
4610806 ATCTACTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA
192 ATCGGCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAA
* * *
4610871 AATTACAGATCTTATCTTCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAG
257 AATTACAGATCTTATCTCCATGTATCGGCTCTAGAGCAGATCAGAAATGGCGAG
* *
4610925 TCTTATCTCCATGTATCGGCTATGGAGCAGA-TCA-AAGATGGCGAGTCTTATCTCCATGTATC-
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTCAGAA-A--GCAAGTCTTATCTCCATGAATCG
* * * * ** * * * * *
4610987 AGCTATGGAGCAGATTTTAGCCACCAGTCTTATCTCCCTGAAGTTACA--AATC--A--G-AAA-
63 A-CTACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAAT
* *** *** * *
4611044 TAGC-GAGTCTTATCTCCATGTATCGGCTATGGAGCAGAT-TTTAACCACCAGTCTTATCTCCCT
127 TA-CAGA-TCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCAT
* * * ** ** * ** *
4611107 GAAGT-TGC-AGTGGAGCAGACTGAAGATA-CAGGTCTTATCTT-CTGAAGTTGCAAAAAACAGA
190 GTA-TCGGCTA-TGGAGCAGATTTTAGCCACCA-GCCTTATCTTCCTGAAGTTGCAGGAAGCAGA
* * *
4611168 CTGAAAATTACAGATCTTATCTCCATGTATCGACTATGGAGCAGATCAGAAATGGCGAG
252 CTGAAAATTACAGATCTTATCTCCATGTATCGGCTCTAGAGCAGATCAGAAATGGCGAG
4611227 TCTTATCTCCATGTATCGGCTAT
1 TCTTATCTCCATGTATCGGCTAT
4611250 CTCCATGTAT
Statistics
Matches: 816, Mismatches: 102, Indels: 63
0.83 0.10 0.06
Matches are distributed among these distances:
302 100 0.12
303 45 0.06
304 36 0.04
305 1 0.00
307 1 0.00
308 16 0.02
309 247 0.30
310 268 0.33
311 88 0.11
312 10 0.01
313 4 0.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (310 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTCAGAAAGCAAGTCTTATCTCCATGAATCGACT
ACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACA
GATCTTATCTCCATGTATCGGCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCG
GCTATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATT
ACAGATCTTATCTCCATGTATCGGCTCTAGAGCAGATCAGAAATGGCGAG
Found at i:4610794 original size:133 final size:133
Alignment explanation
Indices: 4610615--4610937 Score: 357
Period size: 133 Copynumber: 2.4 Consensus size: 133
4610605 AAATGGCGAG
*** **** * * *
4610615 TCTTATCTCCATGTATCGGCTATGGAGTAGAT-TTTAGCCACCAGTCTTATCTCCCTGAAGT-TG
1 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTCCATGAA-TCTA
* * *
4610678 C-AGCGGAACAAACTGAAGATA-CAGGTCTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAAT
65 CTA-CGGAACAAACTGAAGACACCA-GCCTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAAT
4610741 TACAGA
128 TACAGA
* *
4610747 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTTCATGTATCTAC
1 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTCCATGAATCTAC
* * * * ** * *
4610812 TATGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTAC
66 TACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAATTAC
4610877 AGA
131 AGA
* * *
4610880 TCTTATCTTCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATG
1 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTCCATG
4610938 TATCGGCTAT
Statistics
Matches: 160, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
132 33 0.21
133 124 0.77
134 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (133 bp):
TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAGTCTTATCTCCATGAATCTAC
TACGGAACAAACTGAAGACACCAGCCTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAATTAC
AGA
Found at i:4610796 original size:45 final size:45
Alignment explanation
Indices: 4610747--4611001 Score: 218
Period size: 45 Copynumber: 5.7 Consensus size: 45
4610737 AAATTACAGA
*
4610747 TCTTATCTCCATGTATCGGCTATGGAGTAGATCAAAAATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* ** *** **** *
4610792 TCTTATCTTCATGTATCTACTATGGAGCAGAT-TTTAGCCACCAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
* * * * **
4610836 CCTTATCTTCC-TGAAGT-TGC-A-GGAAGCAGA-CTGAAAATTAC-AG
1 TCTTATC-TCCATGTA-TCGGCTATGG-AGCAGATC-AAAAATGGCGAG
* *
4610879 ATCTTATCTTCATGTATCGGCTATGGAGCAGATCAGAAATGGCGAG
1 -TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
4610925 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAGATGGCGAG
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
*
4610970 TCTTATCTCCATGTATCAGCTATGGAGCAGAT
1 TCTTATCTCCATGTATCGGCTATGGAGCAGAT
4611002 TTTAGCCACC
Statistics
Matches: 164, Mismatches: 34, Indels: 24
0.74 0.15 0.11
Matches are distributed among these distances:
42 2 0.01
43 12 0.07
44 29 0.18
45 116 0.71
46 5 0.03
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (45 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATCAAAAATGGCGAG
Found at i:4610801 original size:266 final size:265
Alignment explanation
Indices: 4610260--4610784 Score: 681
Period size: 266 Copynumber: 2.0 Consensus size: 265
4610250 AAAGATACAG
4610260 GTCTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATATTATCTCCATGTATCGGCT
1 GTCTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATATTATCTCCATGTATCGGCT
*
4610325 ATGGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCAC
66 ATAGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCAC
* * *
4610390 CAGCCTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCG
131 CAGCCTTATCTCCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAGATCTTATCTCCATGAATCG
** * * *** *
4610455 GCTATGGAGTAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGTTGATTTTAGC
196 GCTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAC
4610520 CACCA
261 CACCA
* *
4610525 GCCTTATCTTCCTGAAGTTACAGGAAGCAGACTGAAAATTACAGATCTTATCTCCATGTATCGGC
1 GTCTTATCTTCCTGAAGTTACAGGAA-CAGACTGAAAATTACAGATATTATCTCCATGTATCGGC
* * * *
4610590 TCTAGAGTAGATCAGAAATGGCG-AGTCTTATCTCCATGTATCGGCTATGGAGTAGATTTTAGCC
65 TATAGAGCAGATCAGAAATGG-GAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCC
* * *
4610654 ACCAGTCTTATCTCCCTGAAGTTGCAGCGGAA-CAAACTGAAGA-TACAGGTCTTATCTTCC-TG
129 ACCAGCCTTATCTCCCTGAAGTTGCA--GGAAGCAAACTGAAAATTACAGATCTTATC-TCCATG
* * *
4610716 AAGT-TG-TA-GGAAACAGA-CTGAAAATTAC-AGATCTTATCTCCATGTATCGGCTATGGAGTA
191 AA-TCGGCTATGG-AACAGATCAG-AAATGACGAG-TCTTATCTCCATGTATCGGCTATGGAGTA
4610776 GATCAAAAA
252 GAT-AAAAA
4610785 TGGCGAGTCT
Statistics
Matches: 226, Mismatches: 24, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
264 6 0.03
265 67 0.30
266 135 0.60
267 14 0.06
268 4 0.02
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (265 bp):
GTCTTATCTTCCTGAAGTTACAGGAACAGACTGAAAATTACAGATATTATCTCCATGTATCGGCT
ATAGAGCAGATCAGAAATGGGAAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCAC
CAGCCTTATCTCCCTGAAGTTGCAGGAAGCAAACTGAAAATTACAGATCTTATCTCCATGAATCG
GCTATGGAACAGATCAGAAATGACGAGTCTTATCTCCATGTATCGGCTATGGAGTAGATAAAAAC
CACCA
Found at i:4610948 original size:133 final size:133
Alignment explanation
Indices: 4610704--4610956 Score: 434
Period size: 133 Copynumber: 1.9 Consensus size: 133
4610694 AGATACAGGT
*
4610704 CTTATCTTCCTGAAGTTGTAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
1 CTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
* * *
4610769 TGGAGTAGATCAAAAATGGCGAGTCTTATCTTCATGTATCTACTATGGAGCAGATTTTAGCCACC
66 TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACC
4610834 AGC
131 AGC
* *
4610837 CTTATCTTCCTGAAGTTGCAGGAAGCAGACTGAAAATTACAGATCTTATCTTCATGTATCGGCTA
1 CTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
* *
4610902 TGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGCTATGGAGCAGAT
66 TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGAT
4610957 CAAAGATGGC
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 112 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (133 bp):
CTTATCTTCCTGAAGTTGCAGGAAACAGACTGAAAATTACAGATCTTATCTCCATGTATCGGCTA
TGGAGCAGATCAAAAATGGCGAGTCTTATCTCCATGTATCGACTATGGAGCAGATTTTAGCCACC
AGC
Found at i:4611252 original size:17 final size:17
Alignment explanation
Indices: 4611230--4611266 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
4611220 TGGCGAGTCT
4611230 TATCTCCATGTATCGGC
1 TATCTCCATGTATCGGC
4611247 TATCTCCATGTATCGGC
1 TATCTCCATGTATCGGC
4611264 TAT
1 TAT
4611267 GGAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (17 bp):
TATCTCCATGTATCGGC
Found at i:4611285 original size:62 final size:62
Alignment explanation
Indices: 4611185--4611311 Score: 211
Period size: 62 Copynumber: 2.0 Consensus size: 62
4611175 TTACAGATCT
*
4611185 TATCTCCATGTATCGACTATGGAGCAGATCAGAAATGGCGAGTCTTATCTCCATGTATCGGC
1 TATCTCCATGTATCGACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGC
* *
4611247 TATCTCCATGTATCGGCTATGGAGCAAATCA-AAGATGGCGAGTCTTATCTCCATGTATTGGC
1 TATCTCCATGTATCGACTATGGAGCAAATCAGAA-ATGGCGAGTCTTATCTCCATGTATCGGC
4611309 TAT
1 TAT
4611312 GGAGAAGATT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 2 0.03
62 59 0.97
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (62 bp):
TATCTCCATGTATCGACTATGGAGCAAATCAGAAATGGCGAGTCTTATCTCCATGTATCGGC
Found at i:4611660 original size:17 final size:17
Alignment explanation
Indices: 4611596--4611630 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
4611586 ACTAAACCGA
4611596 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
4611613 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
4611630 C
1 C
4611631 TACTTGCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:4611691 original size:42 final size:41
Alignment explanation
Indices: 4611596--4611715 Score: 156
Period size: 42 Copynumber: 2.9 Consensus size: 41
4611586 ACTAAACCGA
*
4611596 CCACTAACTCCATCACCCCACTAACTCCATCACC-CT--ACTTG
1 CCACTAACTCCATCACCCCACTAAAT-CA-C-CCACTAAACTTG
4611637 CCACTAACTCCATCACCCCACTAAATCACCCTACTAAACTTG
1 CCACTAACTCCATCACCCCACTAAATCACCC-ACTAAACTTG
*
4611679 CCACTAACTCCATCATCCCACTAAATCACCCCACTAA
1 CCACTAACTCCATCACCCCACTAAATCA-CCCACTAA
4611716 CCCCATTACC
Statistics
Matches: 72, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
38 2 0.03
39 1 0.01
40 4 0.06
41 25 0.35
42 37 0.51
43 3 0.04
ACGTcount: A:0.32, C:0.46, G:0.02, T:0.21
Consensus pattern (41 bp):
CCACTAACTCCATCACCCCACTAAATCACCCACTAAACTTG
Found at i:4612337 original size:16 final size:15
Alignment explanation
Indices: 4612305--4612349 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
4612295 TTGTATTTTG
4612305 TGTATATTATTTATT
1 TGTATATTATTTATT
4612320 TGTATATATATTGT-TT
1 TGTATAT-TATT-TATT
*
4612336 TGTATATCATTTAT
1 TGTATATTATTTAT
4612350 ACTGTTTCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 11 0.42
16 13 0.50
17 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.09, T:0.62
Consensus pattern (15 bp):
TGTATATTATTTATT
Found at i:4614604 original size:3 final size:3
Alignment explanation
Indices: 4614596--4614684 Score: 169
Period size: 3 Copynumber: 29.7 Consensus size: 3
4614586 CCCATTTATG
*
4614596 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
4614644 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
4614685 TCTTTCTTTC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:4615880 original size:20 final size:20
Alignment explanation
Indices: 4615842--4615880 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4615832 TTCTGTTCTC
**
4615842 GTAGCTTGACTGCAAATATA
1 GTAGCTTGACCACAAATATA
*
4615862 GTAGCTTGACCACATATAT
1 GTAGCTTGACCACAAATAT
4615881 CTGATCTGGC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (20 bp):
GTAGCTTGACCACAAATATA
Found at i:4618103 original size:17 final size:17
Alignment explanation
Indices: 4618071--4618104 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4618061 GATTGCATAC
*
4618071 ATGCACAAATCAGGATA
1 ATGCACAAACCAGGATA
*
4618088 ATGCACAAACCGGGATA
1 ATGCACAAACCAGGATA
4618105 TTTCCGGGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.15
Consensus pattern (17 bp):
ATGCACAAACCAGGATA
Found at i:4628907 original size:37 final size:37
Alignment explanation
Indices: 4628863--4628933 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
4628853 TAGGTTTAAC
4628863 ATTGACAACAAATAAACATATGGGGCAATATGTTTAT
1 ATTGACAACAAATAAACATATGGGGCAATATGTTTAT
4628900 ATTGACAACAAATAAACATATGGGGCAATATGTT
1 ATTGACAACAAATAAACATATGGGGCAATATGTT
4628934 ATTCAAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (37 bp):
ATTGACAACAAATAAACATATGGGGCAATATGTTTAT
Found at i:4636768 original size:6 final size:6
Alignment explanation
Indices: 4636759--4636802 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
4636749 TTTTAGTTTA
4636759 ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT AT
1 ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT ATTGAT AT
4636803 ATTGTTGTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
ATTGAT
Found at i:4638946 original size:16 final size:17
Alignment explanation
Indices: 4638913--4638950 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
4638903 AATAGTGATG
4638913 ATAATGATAAGAAAAAT
1 ATAATGATAAGAAAAAT
*
4638930 ATAATGAT-AGTAAAAT
1 ATAATGATAAGAAAAAT
4638946 ATAAT
1 ATAAT
4638951 ATTAGTACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (17 bp):
ATAATGATAAGAAAAAT
Found at i:4639357 original size:3 final size:3
Alignment explanation
Indices: 4639349--4639591 Score: 137
Period size: 3 Copynumber: 81.0 Consensus size: 3
4639339 GTAAATATTG
* *
4639349 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CGTTA ATA AAA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA
* * * * * *
4639396 ATA ATA AGA AT- ATG TTA GTA ATA ATA A-A TTA ATGGA CTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT--A ATA ATA ATA
* * * *
4639441 A-A ATGA ATAA ATAA ATA A-A CACA AAA ATA A-A GT- ATA ATT ATA ATA
1 ATA AT-A AT-A AT-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * * *
4639486 GCA ATA TTA ACA A-A A-A AGA ATC ATA ATA ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
4639532 ATA ATA ATA ATA ATA ATA ATA ATA TTG ATA ATA AGTA ATA ATA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
4639577 ATA ATA GA-A ATA ATA
1 ATA ATA -ATA ATA ATA
4639592 GTGATAACAA
Statistics
Matches: 186, Mismatches: 37, Indels: 34
0.72 0.14 0.13
Matches are distributed among these distances:
2 15 0.08
3 152 0.82
4 15 0.08
5 4 0.02
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:4643058 original size:16 final size:16
Alignment explanation
Indices: 4643029--4643070 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
4643019 ATAATTATAT
* *
4643029 TAAATAACTATTAATTA
1 TAAATAAAT-TTAAATA
4643046 TAAATAAATTTAAATA
1 TAAATAAATTTAAATA
4643062 T-AATAAATT
1 TAAATAAATT
4643071 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 8 0.35
16 7 0.30
17 8 0.35
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TAAATAAATTTAAATA
Found at i:4643076 original size:22 final size:21
Alignment explanation
Indices: 4643051--4643104 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
4643041 AATTATAAAT
*
4643051 AAATTTAAATATAATAAATTAA
1 AAATTTAAATAT-ATAAAATAA
* *
4643073 AAATTAAAACCATATAAAATAA
1 AAATTTAAA-TATATAAAATAA
*
4643095 ACATTTAAAT
1 AAATTTAAAT
4643105 TTAAATCTAC
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (21 bp):
AAATTTAAATATATAAAATAA
Found at i:4643958 original size:11 final size:11
Alignment explanation
Indices: 4643942--4643973 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
4643932 GAATTAGATC
4643942 TATACTTCTTT
1 TATACTTCTTT
4643953 TATACTTCTTT
1 TATACTTCTTT
4643964 TATACTTCTT
1 TATACTTCTT
4643974 ATGCATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.62
Consensus pattern (11 bp):
TATACTTCTTT
Found at i:4644475 original size:12 final size:15
Alignment explanation
Indices: 4644398--4644479 Score: 60
Period size: 16 Copynumber: 5.3 Consensus size: 15
4644388 TATTTTAAGT
4644398 ATAAGATATTTAATATA
1 ATAAGATA--TAATATA
*
4644415 TATAAGATATTATTATA
1 -ATAAGATA-TAATATA
** *
4644432 ATAATTTAATAATTTA
1 ATAAGAT-ATAATATA
4644448 ATAAGATATAATATA
1 ATAAGATATAATATA
*
4644463 ATAAG-TAAAATA-A
1 ATAAGATATAATATA
4644476 ATAA
1 ATAA
4644480 AAGAAAATAA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
13 5 0.09
14 6 0.11
15 12 0.22
16 15 0.28
17 8 0.15
18 8 0.15
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (15 bp):
ATAAGATATAATATA
Found at i:4644548 original size:15 final size:15
Alignment explanation
Indices: 4644516--4644564 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
4644506 TAAGAACAGA
*
4644516 GAAAGAAACGAAATAG
1 GAAAGAAA-GAAAAAG
4644532 GAAAGAAAGAAAAAG
1 GAAAGAAAGAAAAAG
*
4644547 GAAAGAAAAAGAAAAG
1 GAAAGAAAGA-AAAAG
4644563 GA
1 GA
4644565 GAAATTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 15 0.50
16 15 0.50
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (15 bp):
GAAAGAAAGAAAAAG
Found at i:4644563 original size:16 final size:16
Alignment explanation
Indices: 4644502--4644564 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
4644492 AACAAAATAG
* *
4644502 AGAATAAGAACAGAGAA
1 AGAAAAAGAAAAG-GAA
*
4644519 AG-AAACGAAATAGGAA
1 AGAAAAAGAAA-AGGAA
*
4644535 AGAAAGA-AAAAGGAA
1 AGAAAAAGAAAAGGAA
4644550 AGAAAAAGAAAAGGA
1 AGAAAAAGAAAAGGA
4644565 GAAATTAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
15 11 0.30
16 20 0.54
17 6 0.16
ACGTcount: A:0.68, C:0.03, G:0.25, T:0.03
Consensus pattern (16 bp):
AGAAAAAGAAAAGGAA
Found at i:4646503 original size:53 final size:53
Alignment explanation
Indices: 4646370--4646520 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
4646360 ACAAGTGTGC
* * **
4646370 CCGTTTAAGACCATAGCTGGGCTATGGAATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
4646423 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
4646476 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
4646521 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:4648648 original size:65 final size:65
Alignment explanation
Indices: 4648531--4648654 Score: 153
Period size: 65 Copynumber: 1.9 Consensus size: 65
4648521 AGAGTAACCA
** * *
4648531 TACTGACTTTCTCCCACGGCCAATAGGCACGCCCGTGTTCTATGGCCATGTGATACTTAGCTAGC
1 TACTGACTTTAGCCCACGGCCAATAGACACGCCCGTGTTCTAAGGCCATGTGATACTTAGCTAGC
* * *
4648596 TACTGACTTTAGCCCACGGCC-ATATGACACTCCCGTGTGTC-AAGGCCGTGTGATTCTTA
1 TACTGACTTTAGCCCACGGCCAATA-GACACGCCCGTGT-TCTAAGGCCATGTGATACTTA
4648655 ATAGAATACT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
64 3 0.06
65 45 0.90
66 2 0.04
ACGTcount: A:0.20, C:0.30, G:0.22, T:0.28
Consensus pattern (65 bp):
TACTGACTTTAGCCCACGGCCAATAGACACGCCCGTGTTCTAAGGCCATGTGATACTTAGCTAGC
Found at i:4651559 original size:22 final size:22
Alignment explanation
Indices: 4651531--4651587 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
4651521 CGAGTTGATG
4651531 ACACGGGCGTGTCACATAAGCC
1 ACACGGGCGTGTCACATAAGCC
4651553 ACACGGGCGTGTCACATAAGCC
1 ACACGGGCGTGTCACATAAGCC
4651575 ACACGGGCGTGTC
1 ACACGGGCGTGTC
4651588 GTACTATTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.25, C:0.32, G:0.30, T:0.14
Consensus pattern (22 bp):
ACACGGGCGTGTCACATAAGCC
Found at i:4656432 original size:13 final size:13
Alignment explanation
Indices: 4656414--4656448 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
4656404 CTGGAATATT
4656414 AAAACAAGAATTA
1 AAAACAAGAATTA
*
4656427 AAAACATATAATTA
1 AAAACA-AGAATTA
4656441 AAAACAAG
1 AAAACAAG
4656449 TCAAATGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.17
Consensus pattern (13 bp):
AAAACAAGAATTA
Found at i:4659763 original size:47 final size:46
Alignment explanation
Indices: 4659646--4659818 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
4659636 GGATGGTTGA
4659646 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
4659693 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
4659736 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
4659786 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
4659819 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:4659815 original size:93 final size:92
Alignment explanation
Indices: 4659646--4659815 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
4659636 GGATGGTTGA
* *
4659646 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
4659711 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
4659738 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
4659803 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
4659816 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:4666769 original size:47 final size:46
Alignment explanation
Indices: 4666652--4666824 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
4666642 GGATGGTTGA
4666652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
4666699 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
*
4666742 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
*
4666792 GC--CCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
4666825 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 29 0.27
47 30 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:4666821 original size:93 final size:92
Alignment explanation
Indices: 4666652--4666821 Score: 304
Period size: 93 Copynumber: 1.8 Consensus size: 92
4666642 GGATGGTTGA
* *
4666652 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
4666717 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
4666744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAACTCGTTGAGT
4666809 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
4666822 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 34 0.46
93 40 0.54
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:4673386 original size:36 final size:36
Alignment explanation
Indices: 4673339--4673409 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
4673329 GTAGGTGTTG
4673339 ATAACATAAATCAAAGAGAATCTAGAGAGGATGGAA
1 ATAACATAAATCAAAGAGAATCTAGAGAGGATGGAA
*
4673375 ATAACATAAATCAAATAGAATCTAGAGAGGATGGA
1 ATAACATAAATCAAAGAGAATCTAGAGAGGATGGA
4673410 TTAATCTGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.52, C:0.08, G:0.21, T:0.18
Consensus pattern (36 bp):
ATAACATAAATCAAAGAGAATCTAGAGAGGATGGAA
Found at i:4676836 original size:11 final size:11
Alignment explanation
Indices: 4676822--4676861 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
4676812 TGTTTTCTCC
4676822 CTATTTTGCTA
1 CTATTTTGCTA
*
4676833 CTATTTTACTA
1 CTATTTTGCTA
* *
4676844 TTATGTTGCTA
1 CTATTTTGCTA
4676855 CTATTTT
1 CTATTTT
4676862 ATTGTTATTA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:4680804 original size:131 final size:133
Alignment explanation
Indices: 4680457--4680979 Score: 612
Period size: 132 Copynumber: 4.0 Consensus size: 133
4680447 TAACTATTCA
* * *
4680457 TTTAAAAATTCTTTAAAACAAAGACGA-GATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAA
1 TTTAAAAATTCTTTAAAACAAAGGCGATGATTCGATATTTGGCAATTCGCAGAATCGTGCCCTAA
* * * * * *
4680521 CGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAGTAATCGAATATCCCTTCAAAATTTCACTTATG
66 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATG
4680586 TCT
131 TCT
* * * * * *
4680589 TCTAAAAATCCTTTAAAACGAGGGCGATG-TTCGATATTTGACAATTCGCAGAATCATGCCCTAA
1 TTTAAAAATTCTTTAAAACAAAGGCGATGATTCGATATTTGGCAATTCGCAGAATCGTGCCCTAA
* * *
4680653 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGATCCCTTTAGAGTTTCACCCATG
66 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATG
4680718 TCT
131 TCT
* *
4680721 TTTAAAAATTCTTT-AAACAAAGGCGATGA-TCGATATTGGGCAATTCGCAGAATCGTGCCCTAT
1 TTTAAAAATTCTTTAAAACAAAGGCGATGATTCGATATTTGGCAATTCGCAGAATCGTGCCCTAA
* * * *
4680784 CATGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTCATG
66 CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATG
4680849 T-T
131 TCT
* ** ** * ** * *
4680851 TTCTAAAAACTCTTCGAAACAAAGGAAAT-ATTCGATGTTTGGCAATTCGGGGAAACGTACCCTA
1 TT-TAAAAATTCTTTAAAACAAAGGCGATGATTCGATATTTGGCAATTCGCAGAATCGTGCCCTA
* * * * *
4680915 TCGTGCTGGGTTGCGATTTC-CTGTTTG-TCCAAAATGATCGAAGATTCCTTTAGAATTTCACTC
65 ACGTGTTGGGTTGCAATTTCTC-GTTTGCT-CAAAATAATCGAAGATCCCTTTAGAATTTCACTC
4680978 AT
128 AT
4680980 ACTTTCTAAA
Statistics
Matches: 336, Mismatches: 48, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
130 3 0.01
131 114 0.34
132 218 0.65
133 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (133 bp):
TTTAAAAATTCTTTAAAACAAAGGCGATGATTCGATATTTGGCAATTCGCAGAATCGTGCCCTAA
CGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACTCATG
TCT
Found at i:4680957 original size:263 final size:264
Alignment explanation
Indices: 4680457--4680975 Score: 634
Period size: 263 Copynumber: 2.0 Consensus size: 264
4680447 TAACTATTCA
* * *
4680457 TTTAAAAATTCTTTAAAACAAAGACGAGATTTGATATTTGGCAATTCGCGGAATCGTGCCCTAAC
1 TTTAAAAATTCTTTAAAACAAAGACGAGATTCGATATTGGGCAATTCGCAGAATCGTGCCCTAAC
* * * *
4680522 GTGTTGGGTTGCAATTTCGCGTTTGCTCAAAGTAATCGAATATCCCTTCAAAATTTCACTTATGT
66 ATGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAAGATCCCTTCAAAATTTCACTCATGT
* * * ** * * *
4680587 CTTCTAAAAATCCTTTAAAACGAGGGCGATGTTCGATATTTGACAATTCGCAGAATCATGCCCTA
131 CTTCTAAAAATCCTTCAAAACAAAGGAAATATTCGATATTTGACAATTCGCAGAAACATACCCTA
* * *
4680652 ACGTGTTGGGTTGCAATTTCTCGTTTGCTCAAAGTAATCGAAGATCCCTTTAGAGTTTCACCCAT
196 ACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACCCAT
4680717 GTCT
261 GTCT
* *
4680721 TTTAAAAATTCTTT-AAACAAAGGCGATGA-TCGATATTGGGCAATTCGCAGAATCGTGCCCTAT
1 TTTAAAAATTCTTTAAAACAAAGACGA-GATTCGATATTGGGCAATTCGCAGAATCGTGCCCTAA
* * * ***
4680784 CATGTTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAAGGTCCCTTTTGAATTTCACTCATG
65 CATGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAAGATCCCTTCAAAATTTCACTCATG
* * * * ** *
4680849 TTTTCTAAAAA-CTCTTCGAAACAAAGGAAATATTCGATGTTTGGCAATTCGGGGAAACGTACCC
130 TCTTCTAAAAATC-CTTCAAAACAAAGGAAATATTCGATATTTGACAATTCGCAGAAACATACCC
* * * *
4680913 TATCGTGCTGGGTTGCGATTTC-CTGTTTG-TCCAAAATGATCGAAGATTCCTTTAGAATTTCAC
194 TAACGTGCTGGGTTGCAATTTCTC-GTTTGCT-CAAAATAATCGAAGATCCCTTTAGAATTTCAC
4680976 TCATACTTTC
Statistics
Matches: 214, Mismatches: 37, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
262 3 0.01
263 195 0.91
264 16 0.07
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (264 bp):
TTTAAAAATTCTTTAAAACAAAGACGAGATTCGATATTGGGCAATTCGCAGAATCGTGCCCTAAC
ATGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAAGATCCCTTCAAAATTTCACTCATGT
CTTCTAAAAATCCTTCAAAACAAAGGAAATATTCGATATTTGACAATTCGCAGAAACATACCCTA
ACGTGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAAGATCCCTTTAGAATTTCACCCAT
GTCT
Found at i:4684651 original size:18 final size:17
Alignment explanation
Indices: 4684622--4684655 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
4684612 ACTATTTTTA
4684622 TTAAATTATAATTATTT
1 TTAAATTATAATTATTT
4684639 TTAAATGTATAATTATT
1 TTAAAT-TATAATTATT
4684656 AAAATTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TTAAATTATAATTATTT
Found at i:4686247 original size:5 final size:6
Alignment explanation
Indices: 4686232--4686261 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
4686222 TGTTTAAGGA
4686232 AAAAAT AAAAAT AAAAAT AAAAAT ATAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT A-AAAA
4686262 CATAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:4686429 original size:20 final size:20
Alignment explanation
Indices: 4686378--4686430 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4686368 ATATGTAATT
*
4686378 TTTTTATTTTTTATACAAAC
1 TTTTAATTTTTTATACAAAC
*
4686398 TTTTCAACTTTTTA-ACAAAC
1 TTTT-AATTTTTTATACAAAC
4686418 ATTTTAATTTTTT
1 -TTTTAATTTTTT
4686431 CCATTATTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.58
Consensus pattern (20 bp):
TTTTAATTTTTTATACAAAC
Found at i:4688273 original size:16 final size:15
Alignment explanation
Indices: 4688238--4688273 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
4688228 CAAAATCAAG
4688238 ATTTTTACAATATCC
1 ATTTTTACAATATCC
*
4688253 ATTTTTACAATATTC
1 ATTTTTACAATATCC
4688268 ATTTTT
1 ATTTTT
4688274 CTTTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTTACAATATCC
Found at i:4691942 original size:42 final size:42
Alignment explanation
Indices: 4691883--4691989 Score: 144
Period size: 42 Copynumber: 2.5 Consensus size: 42
4691873 CGGGCGTGTA
* *
4691883 TGGCAACTTAAATAGTTACACGACCTGGCACATGGGCATTTG
1 TGGCAACTTAAAGAGTTACACGACCTCGCACATGGGCATTTG
* *
4691925 TGGCAACTTAAAGAGTTACACGGCCTCGCACATGGGCGTTTG
1 TGGCAACTTAAAGAGTTACACGACCTCGCACATGGGCATTTG
* *
4691967 -GGCGATCTTAATGAGTTACACGA
1 TGGC-AACTTAAAGAGTTACACGA
4691990 GTGAGGAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 3 0.05
42 54 0.95
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (42 bp):
TGGCAACTTAAAGAGTTACACGACCTCGCACATGGGCATTTG
Found at i:4696427 original size:30 final size:28
Alignment explanation
Indices: 4696363--4696428 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
4696353 TAAGTCCCCC
*
4696363 CCAAAAAAAACCTAACCCAAAAAAAAAG
1 CCAAGAAAAACCTAACCCAAAAAAAAAG
**
4696391 AAAAGAAAAACCTAACCCCCCAAAAAAAAA-
1 CCAAGAAAAACCTAA---CCCAAAAAAAAAG
4696421 CCAAGAAA
1 CCAAGAAA
4696429 CCCTAGCCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 12 0.40
30 6 0.20
31 12 0.40
ACGTcount: A:0.67, C:0.26, G:0.05, T:0.03
Consensus pattern (28 bp):
CCAAGAAAAACCTAACCCAAAAAAAAAG
Found at i:4696674 original size:18 final size:17
Alignment explanation
Indices: 4696635--4696673 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
4696625 CCTAAAAGTG
*
4696635 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
4696652 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
4696669 ATTTT
1 ATTTT
4696674 TTATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:4696742 original size:11 final size:12
Alignment explanation
Indices: 4696720--4696770 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 12
4696710 TATATACATC
4696720 ATAATAAAAAAT
1 ATAATAAAAAAT
4696732 ATAATAAAAATAT
1 ATAATAAAAA-AT
*
4696745 ATATACAAAACAAAT
1 ATA-A-TAAA-AAAT
4696760 ATAA-AAAAAAT
1 ATAATAAAAAAT
4696771 TACATTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
11 4 0.12
12 13 0.38
13 5 0.15
14 2 0.06
15 8 0.24
16 2 0.06
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATAAAAAAT
Found at i:4697251 original size:37 final size:37
Alignment explanation
Indices: 4697209--4697310 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
4697199 CTAACATTTT
4697209 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
4697246 CTTTTATTATATGCATATATATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATAT-TAT-TAT-TATTATTATGTACATA
*
4697289 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
4697311 CCAAATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 8 0.15
40 3 0.05
41 3 0.05
42 11 0.20
43 11 0.20
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:4699041 original size:12 final size:12
Alignment explanation
Indices: 4699006--4699041 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
4698996 AACATTTTGA
* *
4699006 CATTCATGCATC
1 CATTCATACATT
4699018 CATTCATACATT
1 CATTCATACATT
4699030 CATTCATACATT
1 CATTCATACATT
4699042 GCATATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.39
Consensus pattern (12 bp):
CATTCATACATT
Found at i:4704136 original size:46 final size:46
Alignment explanation
Indices: 4704069--4704208 Score: 183
Period size: 46 Copynumber: 3.0 Consensus size: 46
4704059 GTGTGCTCTC
* *
4704069 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
**
4704115 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * *
4704161 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
4704207 TG
1 TG
4704209 TCAAAGATAA
Statistics
Matches: 82, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.01
46 81 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:4710864 original size:61 final size:61
Alignment explanation
Indices: 4710769--4710883 Score: 221
Period size: 61 Copynumber: 1.9 Consensus size: 61
4710759 CGTATGTTTC
*
4710769 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAA
4710830 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
4710884 ATTTCAATTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (61 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAA
Found at i:4710958 original size:137 final size:137
Alignment explanation
Indices: 4710693--4710963 Score: 370
Period size: 137 Copynumber: 2.0 Consensus size: 137
4710683 GTTTTATTTC
* * * *
4710693 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
*** * * * *
4710758 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCGTATGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTCAGCACACGCTGAGGTA
4710823 TTTTAAA
131 TTTTAAA
4710830 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
*
4710894 CT-GT-TGTCAAAAAAATCAACTCGTATAGCGAGAGGCGAGTTGAGCCTCAAGTCACACG-TCGA
65 CTCGTATGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTC-AG-CACACGCT-GA
4710956 GGTATTTT
127 GGTATTTT
4710964 CAATTTTCGT
Statistics
Matches: 118, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
135 38 0.32
136 5 0.04
137 72 0.61
138 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (137 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATTTC
TCGTATGTCAAAAAAATCAACTCATATAGCGAGAGGCGAGTTGAGCCTCAGCACACGCTGAGGTA
TTTTAAA
Found at i:4711171 original size:170 final size:169
Alignment explanation
Indices: 4710827--4711480 Score: 867
Period size: 170 Copynumber: 3.9 Consensus size: 169
4710817 GAGGTATTTT
* *
4710827 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT-AGGCACACGCTGAGCTAATTTCAA
* * *
4710891 TTTCTGT-TGTCAAAAAAATCAACTCGTATAGCGAGAGGCGAGTTGAGCCTCAAGTCACACG-TC
65 TTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCT-
* *
4710954 GAGGTATTTTCAATTTTCGTTTTTCAAATTTTTGCCTTTCAAA
129 GAGGTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTC-AA
* * *
4710997 AAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT-AGGCACACGCTGAGCTAATTTCAA
* * * *
4711061 TTTCTGT-TGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCATACTC
65 TTTCTGTCTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
4711125 TGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC-A
128 TGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAA
* * * *
4711166 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGG--CACACGCTGAGCTAATTTCA
* * * *
4711231 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCC
64 ATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCT
4711296 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTT-AA
129 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAA
* * * *
4711336 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGG--CACACGCTGAGCTAATTTCA
* * *
4711401 ATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGC
64 ATTTCTGTCTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
*
4711464 TGAGGTATTGTCAATTT
128 TGAGGTATTTTCAATTT
4711481 TTTCGTATGT
Statistics
Matches: 447, Mismatches: 28, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
168 2 0.00
169 59 0.13
170 236 0.53
171 77 0.17
172 72 0.16
173 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (169 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTAGGCACACGCTGAGCTAATTTCAAT
TTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCTGA
GGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAA
Found at i:4711221 original size:93 final size:92
Alignment explanation
Indices: 4711055--4711245 Score: 233
Period size: 93 Copynumber: 2.1 Consensus size: 92
4711045 GCTGAGTTAA
* * *
4711055 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCA
* * * *
4711120 TACTCTGAGGTATTTTCAATTTCCGTT
66 CACGCTGAGCTATTTTCAATTTCCGTC
* * *
4711147 TTTCAATTTCTGCCTT-TCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGC
1 TTTCAATTTCTG--TTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-
* *
4711210 TCACGCGCTGAGCTATTTTCAATTTCTGTC
63 TCACACGCTGAGCTATTTTCAATTTCCGTC
4711240 TTTCAA
1 TTTCAA
4711246 AAAAATCAAC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
92 14 0.17
93 68 0.81
94 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.35
Consensus pattern (92 bp):
TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCA
CACGCTGAGCTATTTTCAATTTCCGTC
Found at i:4711275 original size:77 final size:77
Alignment explanation
Indices: 4711146--4711322 Score: 237
Period size: 77 Copynumber: 2.3 Consensus size: 77
4711136 CAATTTCCGT
* * ** *
4711146 TTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGTCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGAT
* *
4711211 CACGCGCTGAGCTA
64 CACACGCCGAGCTA
*
4711225 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
*
4711290 CACGCCGAGGTA
66 CACGCCGAGCTA
* *
4711302 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
4711323 TTTCTGCCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 69 0.79
79 18 0.21
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
CACGCCGAGCTA
Found at i:4711397 original size:93 final size:91
Alignment explanation
Indices: 4711225--4711415 Score: 256
Period size: 93 Copynumber: 2.1 Consensus size: 91
4711215 CGCTGAGCTA
* * *
4711225 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
*
4711290 CACGCCGAGGTATTTTCAATTTCCGT
66 CACGCCGAGCTATTTTCAATTTCCGT
* ** *
4711316 TTTTCAATTTCTGCCTTTAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGCCTTT--AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGAT
* * *
4711381 CACGCGCTGAGCTATTTTCAATTTCTGT
64 CACACGCCGAGCTATTTTCAATTTCCGT
*
4711409 CTTTCAA
1 TTTTCAA
4711416 AAAAAATCAA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
91 17 0.20
93 69 0.80
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
CACGCCGAGCTATTTTCAATTTCCGT
Found at i:4711446 original size:78 final size:76
Alignment explanation
Indices: 4711316--4711551 Score: 246
Period size: 77 Copynumber: 3.1 Consensus size: 76
4711306 CAATTTCCGT
* * * * *
4711316 TTTTCAATTTCTGCCTTTAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGTCTTT-CAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--
*
4711381 CACGCGCTGAGCTA
63 CACACGCTGAGCTA
*
4711395 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
1 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCAC
*
4711460 ACGCTGAGGTA
66 ACGCTGAGCTA
* * * *
4711471 TTGTCAATTTTTTCGTATGTTTC---AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCA
1 TTTTCAA---TTTC-TGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
* *
4711533 GG-ACGCGCTGAGGTA
61 GGCACACGCTGAGCTA
4711548 TTTT
1 TTTT
4711552 AAAAAAAAAT
Statistics
Matches: 138, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
76 17 0.12
77 52 0.38
78 42 0.30
79 21 0.15
80 6 0.04
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCAC
ACGCTGAGCTA
Found at i:4711563 original size:139 final size:135
Alignment explanation
Indices: 4711414--4711669 Score: 388
Period size: 139 Copynumber: 1.9 Consensus size: 135
4711404 TCTGTCTTTC
*
4711414 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT-ATTGTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA
*** *
4711478 TTTTTTCGTATGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACGCGCTG
65 ---TTTC-TATGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGGACGCGCTG
4711543 AGGTATTTTA
126 AGGTATTTTA
4711553 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
* * *
4711618 TTCTTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG
66 TTCTATGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGG
4711670 TCACACGTCG
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
135 42 0.39
136 4 0.04
139 59 0.55
140 3 0.03
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (135 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
TTCTATGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGGACGCGCTGAGGTA
TTTTA
Found at i:4711693 original size:75 final size:73
Alignment explanation
Indices: 4711554--4711694 Score: 221
Period size: 73 Copynumber: 1.9 Consensus size: 73
4711544 GGTATTTTAA
*
4711554 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
4711619 TCTTTGTC
66 TCTTTGTC
* *
4711627 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCT-GAGGTAATTTCA
4711691 ATTT
63 ATTT
4711695 TCATTTTTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
73 41 0.66
74 1 0.02
75 20 0.32
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (73 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTTTGTC
Found at i:4711803 original size:553 final size:552
Alignment explanation
Indices: 4710996--4712271 Score: 1703
Period size: 553 Copynumber: 2.3 Consensus size: 552
4710986 TGCCTTTCAA
* *
4710996 AAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* *
4711061 TTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCATACTCT
66 TTTCTGTTGTC-AAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACTCT
* * *
4711126 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAG
130 GAGGTATTTTCAATTTCCATTTTTCAATTTATGCCTTTCAAAAAAAAATCAACTCATATTGCGAG
* * * *
4711191 AGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAAC
195 AGGTGAGTTAAGCCTAGG--CACACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAATCAAC
*
4711256 TCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCG-TTTTT
258 TCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTT
4711320 CAATTTCTGCCTTTAAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACG
323 CAATTTCTGCCTTT-AAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACG
4711385 CGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
387 CGCTGAGCTATTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
4711450 GCCTCGGGACACGCTGAGGTATTGTCAATTTTTTCGTATGTTTCAAAAATCAACTCATATTACGA
451 GCCTCGGGACACGCTGAGGTATTGTCAATTTTTTCGTATGTTTCAAAAATCAACTCATATTACGA
4711515 GAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
516 GAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
4711552 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
4711617 TTTCT-TTGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTC-
66 TTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC-TCT
*
4711679 GAGGTATTTTCAATTTTCATTTTTCAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATTGCG
130 GAGGTATTTTCAATTTCCATTTTTC-AATTTATGCCTTTC-AAAAAAAAATCAACTCATATTGCG
* *
4711744 A-AGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTTCAATTTCTGT-TGTCAAAAAAAAATC
193 AGAGGTGAGTTAAGCCT-AGGCACACGCTGAGCTAATTTCAATTTCTGTCTGTC--AAAAAAATC
* * *
4711806 AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTT
255 AACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTT
*
4711871 TTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCA
320 TTTCAATTTCTGCCTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCA
4711936 CGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
385 CGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
** * * * * *
4712001 AGCCTCAGATCACACGCCGATGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAA
450 AGCCTC-G-GGACACGCTGAGGTATTGTCAA--T---TTTTTC---GTATG--TTTC---AAAAA
* * * * *
4712066 TCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTT
500 TCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGG---ACGCGCTGAGGTATTTT
*
4712121 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
1 -AA------------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* *** * *
4712186 GAGGT-ATTGTCAATTTTTCGTATGT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
53 GAGGTAATT-TCAATTTCT-GT-TGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGC
* *
4712249 CTCAGG--ACGCGCTGAGGTATTTT
115 CTCAGGTCACACTCTGAGGTATTTT
4712272 AAAAAAAAAT
Statistics
Matches: 637, Mismatches: 39, Indels: 61
0.86 0.05 0.08
Matches are distributed among these distances:
551 3 0.00
552 64 0.10
553 216 0.34
554 65 0.10
555 31 0.05
556 69 0.11
559 6 0.01
562 3 0.00
564 4 0.01
566 2 0.00
567 34 0.05
569 16 0.03
570 2 0.00
581 3 0.00
582 63 0.10
583 13 0.02
584 1 0.00
585 42 0.07
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (552 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCAAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACTCTG
AGGTATTTTCAATTTCCATTTTTCAATTTATGCCTTTCAAAAAAAAATCAACTCATATTGCGAGA
GGTGAGTTAAGCCTAGGCACACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAATCAACTCA
TATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTTCAA
TTTCTGCCTTTAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCT
GAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
GGGACACGCTGAGGTATTGTCAATTTTTTCGTATGTTTCAAAAATCAACTCATATTACGAGAGGT
GAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
Found at i:4711837 original size:76 final size:76
Alignment explanation
Indices: 4711720--4711865 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 76
4711710 ATGCCTTTCA
* * *
4711720 AAAAAAAAATCAACTCATATTGCGAAGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
4711784 TTTCTGTTGTC
66 TTTCTGTTGTC
* * *
4711795 AAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 AAAAAAAAATCAACTCATATTGCGA-AGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTC
4711860 AATTTC
64 AATTTC
4711866 CGTTTTTTCA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
75 24 0.39
76 17 0.27
78 21 0.34
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (76 bp):
AAAAAAAAATCAACTCATATTGCGAAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAA
TTTCTGTTGTC
Found at i:4711950 original size:93 final size:93
Alignment explanation
Indices: 4711778--4711958 Score: 233
Period size: 93 Copynumber: 1.9 Consensus size: 93
4711768 GCTGAGTTAA
* * *
4711778 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCA
*
4711843 CACGCCGAGGTATTTTCAATTTCCGTTT
66 CACGCCGAGCTATTTTCAATTTCCGTTT
* * *
4711871 TTTCAATTTCTGCCTT-TC-AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGC
1 TTTCAATTTCTG--TTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-
* *
4711933 TCACGCGCTGAGCTATTTTCAATTTC
63 TCACACGCCGAGCTATTTTCAATTTC
4711959 TGTCTTTCAA
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
92 2 0.03
93 70 0.92
94 2 0.03
95 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (93 bp):
TTTCAATTTCTGTTGTCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCA
CACGCCGAGCTATTTTCAATTTCCGTTT
Found at i:4711998 original size:77 final size:77
Alignment explanation
Indices: 4711870--4712045 Score: 237
Period size: 77 Copynumber: 2.3 Consensus size: 77
4711860 AATTTCCGTT
* * ** *
4711870 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
* *
4711935 ACGCGCTGA-GCTA
65 ACACGCCGATG-TA
*
4711948 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
4712013 CACGCCGATGTA
66 CACGCCGATGTA
* *
4712025 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
4712046 TTTCTGCCTT
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
77 68 0.78
78 19 0.22
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
CACGCCGATGTA
Found at i:4712074 original size:169 final size:166
Alignment explanation
Indices: 4711553--4712340 Score: 879
Period size: 169 Copynumber: 4.9 Consensus size: 166
4711543 AGGTATTTTA
* *
4711553 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCAAT
* *
4711618 TTCT-TTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAG
66 TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
* * *
4711682 GTATTTTCAATTTTCATTTTTCAAATTTATGCCTTTC
131 GTATTTTCAATTTCCGTTTTTC-AATTTCTGCCTTTC
* *
4711719 AAAAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCA
1 --AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCA
* *
4711783 ATTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGC
64 ATTTCTGTTGTC--AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
4711848 CGAGGTATTTTCAATTTCCGTTTTTTCAATTTCTGCCTTTC
127 CGAGGTATTTTCAATTTCCG-TTTTTCAATTTCTGCCTTTC
* * * *
4711889 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG---ACACGCTGAGCTAATTTC
* * *
4711953 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGC
63 AATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
*
4712018 CGATGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
127 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * *
4712058 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG---ACACGCTGAGCTAATTTC
* * *
4712122 AATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACGC
63 AATTTCTGT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
* * * *
4712185 TGAGGTATTGTCAA------TTTTTC---GTATG--TTTC
127 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
* * * *
4712214 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGT-ATTTTAA-
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCAAT
* *
4712274 ----------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAG
66 TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
*
4712327 GTAATTTCAATTTC
131 GTATTTTCAATTTC
4712341 TATTGTCAAA
Statistics
Matches: 572, Mismatches: 33, Indels: 56
0.87 0.05 0.08
Matches are distributed among these distances:
138 58 0.10
139 2 0.00
150 5 0.01
151 11 0.02
153 35 0.06
154 2 0.00
156 4 0.01
158 3 0.01
161 6 0.01
167 60 0.10
168 55 0.10
169 152 0.27
170 146 0.26
171 30 0.05
172 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (166 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGCTAATTTCAAT
TTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
GTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTC
Found at i:4712119 original size:92 final size:91
Alignment explanation
Indices: 4711948--4712137 Score: 265
Period size: 92 Copynumber: 2.1 Consensus size: 91
4711938 CGCTGAGCTA
* *
4711948 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
4712013 CACGCCGATGTATTTTCAATTTCCGT
66 CACGCCGATGTATTTTCAATTTCCGT
* ** *
4712039 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
1 TTTTCAATTTCTGCCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
* * *
4712104 ACGCGCTGA-GCTATTTTCAATTTCTGT
65 ACACGCCGATG-TATTTTCAATTTCCGT
*
4712131 CTTTCAA
1 TTTTCAA
4712138 AAAAATCAAC
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
91 19 0.22
92 68 0.78
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (91 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATCA
CACGCCGATGTATTTTCAATTTCCGT
Found at i:4712245 original size:76 final size:74
Alignment explanation
Indices: 4712042--4712387 Score: 335
Period size: 76 Copynumber: 4.7 Consensus size: 74
4712032 TTTCCGTTTT
** * * * *
4712042 TCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACG
1 TCAATTTCTATCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACG
* *
4712107 CGCTGAGCTATTT
62 CGCTGAGGTATTG
* *
4712120 TCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TCAATTTCTATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGC
4712185 TGAGGTATTG
65 TGAGGTATTG
* *
4712195 TCAATTTTTCGTATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGC
1 TCAA--TTTC-TATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGC
4712259 GCTGAGGTATT-
63 GCTGAGGTATTG
* * *
4712270 TTAA-----A------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 TCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCT
4712324 GAGGTAATT-
66 GAGGT-ATTG
* * *
4712333 TCAATTTCTAT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTC
1 TCAATTTCTATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
4712388 AGGTCACACG
Statistics
Matches: 235, Mismatches: 17, Indels: 36
0.82 0.06 0.12
Matches are distributed among these distances:
62 52 0.22
63 6 0.03
67 1 0.00
68 1 0.00
74 37 0.16
75 20 0.09
76 54 0.23
77 43 0.18
78 21 0.09
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (74 bp):
TCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCT
GAGGTATTG
Found at i:4712404 original size:138 final size:137
Alignment explanation
Indices: 4712136--4712409 Score: 405
Period size: 138 Copynumber: 2.0 Consensus size: 137
4712126 TCTGTCTTTC
*
4712136 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAA-T
* * *
4712201 TTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGG
65 TTTCGTATGTGTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGG
4712266 TATTTTAA
130 TATTTTAA
4712274 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA-
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAAT
*
4712337 TTTC-TAT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-T
65 TTTCGTATGTGTC--AAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCT
4712399 CGAGGTATTTT
126 -GAGGTATTTT
4712410 CAATTTTCGT
Statistics
Matches: 125, Mismatches: 5, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
134 3 0.02
135 3 0.02
136 43 0.34
137 1 0.01
138 72 0.58
139 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (137 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATT
TTCGTATGTGTCAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGT
ATTTTAA
Found at i:4712415 original size:76 final size:74
Alignment explanation
Indices: 4712274--4712415 Score: 223
Period size: 74 Copynumber: 1.9 Consensus size: 74
4712264 GGTATTTTAA
*
4712274 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
4712339 TCTATTGTC
66 TCTATTGTC
* *
4712348 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCT-GAGGTAATTTCA
4712412 ATTT
63 ATTT
4712416 TCGTTTTTCA
Statistics
Matches: 62, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
74 41 0.66
75 1 0.02
76 20 0.32
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (74 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATT
TCTATTGTC
Found at i:4712553 original size:76 final size:77
Alignment explanation
Indices: 4712438--4712817 Score: 283
Period size: 76 Copynumber: 4.8 Consensus size: 77
4712428 TTTATGCCTT
* * *
4712438 TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTT
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGT-ATTT
*
4712502 T-AATTTCTGTTG
65 TCAATTTCCGTTG
* *
4712514 TCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTATTT
*
4712579 TCAATTTCCGTTT
65 TCAATTTCCGTTG
* * * * * *
4712592 TCAATTTCTGCCTTTCAAAAAAAACGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACG
1 TCAA------------AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACG
* * *
4712656 CGCTGAGCTATTTTCAATTTCTGTCTT
54 C-C-GAGGTATTTTCAATTTCCGT-TG
* * * *
4712683 TC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTATTGT
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTATTTT
*
4712745 CAATTTTTCGTATG
66 CAA-TTTCCGT-TG
*** * * *
4712759 T--TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGCGCTGAGGTAT
1 TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAT
4712818 ATTAAAAAAT
Statistics
Matches: 250, Mismatches: 32, Indels: 44
0.77 0.10 0.13
Matches are distributed among these distances:
75 11 0.04
76 102 0.41
77 50 0.20
78 23 0.09
88 6 0.02
89 3 0.01
90 51 0.20
91 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (77 bp):
TCAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTATTTT
CAATTTCCGTTG
Found at i:4712565 original size:721 final size:721
Alignment explanation
Indices: 4710693--4713304 Score: 3929
Period size: 721 Copynumber: 3.6 Consensus size: 721
4710683 GTTTTATTTC
* *
4710693 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
4710758 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
4710823 TTTT-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
131 TTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* *
4710887 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATAGCGAGAGGCGAGTTGAGCCTCAAGTCACACG
196 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
*
4710952 TCGAGGTATTTTCAATTTTCGTTTTTCAAATTTTTGCCTTTCAAAAAAAAAAATCAACTCATATT
261 TCGAGGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTC-AAAAAAAAAATCAACTCATATT
*
4711017 GTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAAT
325 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAAT
* * *
4711082 CAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCATACTCTGAGGTATTTTCAATTTCCGTT
390 CAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
4711147 TTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
455 TTTCAATTTCTGCCTTTC-AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
4711212 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
519 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
4711277 GAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTAAAAAAAA
584 GAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTT-CAAAAAA
4711342 AATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCT
648 AATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCT
4711407 GTCTTTCAAA
713 GTCTTTC-AA
4711417 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA-TTT
*
4711482 TTCGTATGTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGT
65 TTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGT
4711547 ATTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
130 ATTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
4711612 TTCAATTTCT-TTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
195 TTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
*
4711676 GTCGAGGTATTTTCAATTTTCATTTTTCAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATT
260 GTCGAGGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATT
4711741 GCGA-AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAAT
325 GCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAAT
4711805 CAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
390 CAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCG-T
4711870 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
454 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTC
4711935 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
519 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
4712000 GAGCCTCAGATCACACGCCGATGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
584 GAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAA
4712065 ATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG
649 ATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTG
4712130 TCTTTCAA
714 TCTTTCAA
4712138 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
4712203 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
66 TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
4712268 TTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
131 TTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
4712333 TCAATTTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
196 TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
4712398 TCGAGGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTC-AAAAAAAAATCAACTCATATTG
261 TCGAGGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATTG
*
4712462 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTTAATTTCTGTTGTCAAAAAAAAATC
326 CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAATC
4712527 AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCG-TT
391 AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTT
4712591 TTCAATTTCTGCCTTTCAAAAAAAA-CGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCAC
456 TTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCAC
4712655 GCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
521 GCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** * * * *
4712720 GCCTC-G-GGACACGCTGAGGTATTGTCAA------TTTTTC---GTATG--TTTC---AAAAAT
586 GCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAT
* * * * *
4712769 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACGCGCTGAGGTATATT-AA-------
651 CGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTGT
4712823 -----AA
715 CTTTCAA
* *
4712825 AATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT-ATTGTCAATTT
* *** * * *
4712889 CT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG-TCGA
65 TTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACGCGCT-GA
4712951 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAAATCAACTCATATTGCGA
127 -G--------------G----T---A----T---TTT---AAAAAAAAATCAACTCATATTGCGA
* *
4713016 GAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTAAAAAAAAAAATCAA
160 GAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGT---CAAAAAAATCAA
* *
4713081 CTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGTTTTT
222 CTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAGGTATTTTCAATTTTCGTTTTT
* * * *
4713146 C-AATTTCTGCCTTTC--AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTC
287 CAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---
* * * * * * * *
4713207 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTC--AAAAAACTCAACTCATATTGCGAGAGGTGAG
349 ACACGCTGAGTTAATTTCAATTTCTGT-TGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAG
* ** *
4713270 TTGAGCCTC-GG-GACACGTTGAGGTATTATCAATTT
413 TTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
4713305 TCGTATGTTT
Statistics
Matches: 1780, Mismatches: 59, Indels: 103
0.92 0.03 0.05
Matches are distributed among these distances:
685 42 0.02
686 3 0.00
687 67 0.04
688 4 0.00
699 2 0.00
700 15 0.01
702 36 0.02
703 2 0.00
705 4 0.00
706 1 0.00
707 3 0.00
709 1 0.00
710 6 0.00
713 1 0.00
716 20 0.01
717 1 0.00
718 109 0.06
719 122 0.07
720 207 0.12
721 330 0.19
722 176 0.10
723 290 0.16
724 104 0.06
725 165 0.09
726 69 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (721 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
TCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTA
TTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
TCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
TCGAGGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTCAAAAAAAAAATCAACTCATATTG
CGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAAAATC
AACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTT
TTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCAC
GCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGATCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAT
CGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTC
TTTCAA
Found at i:4712606 original size:168 final size:164
Alignment explanation
Indices: 4712273--4712813 Score: 684
Period size: 168 Copynumber: 3.3 Consensus size: 164
4712263 AGGTATTTTA
* *
4712273 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAAT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTTAAT
* *
4712338 TTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGAG
66 TTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
4712403 GTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTC
131 GTATTTTCAA-TTTCG-TTTTC-AATTTATGCCTTTC
*
4712440 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTTAA
1 -AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTTAA
*
4712505 TTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCC
65 TTTCTGTTGTC--AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
*
4712570 GAGGTATTTTCAATTTCCGTTTTCAATTTCTGCCTTTC
128 GAGGTATTTTCAATTT-CGTTTTCAATTTATGCCTTTC
* * * *
4712608 AAAAAAAA-CGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCT-ATTTT
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTT
* * * *
4712670 CAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACG
63 -AATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
* * *
4712733 CTGAGGTATTGTCAA--T--TTTTC---GTATG--TTTC
126 CCGAGGTATTTTCAATTTCGTTTTCAATTTATGCCTTTC
*
4712763 ---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAG
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
4712814 GTATATTAAA
Statistics
Matches: 340, Mismatches: 23, Indels: 37
0.85 0.06 0.09
Matches are distributed among these distances:
151 10 0.03
152 5 0.01
153 29 0.09
154 2 0.01
155 4 0.01
157 3 0.01
160 5 0.01
163 1 0.00
165 20 0.06
166 31 0.09
167 50 0.15
168 104 0.31
169 11 0.03
170 65 0.19
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (164 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTTAAT
TTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
GTATTTTCAATTTCGTTTTCAATTTATGCCTTTC
Found at i:4712668 original size:90 final size:92
Alignment explanation
Indices: 4712517--4712686 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 92
4712507 TCTGTTGTCA
* * * *
4712517 AAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTCA
4712582 ATTTCCGT-TTTCAATTTCTGCCTTTC
66 ATTTCCGTCTTTCAATTTCTGCCTTTC
* * * * *
4712608 AAAAAAAA-CGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-TCACACGCCGAGCTATTTTC
*
4712671 AATTTCTGTCTTTCAA
65 AATTTCCGTCTTTCAA
4712687 AAAAATCAAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
89 2 0.03
90 51 0.76
91 14 0.21
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (92 bp):
AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTCA
ATTTCCGTCTTTCAATTTCTGCCTTTC
Found at i:4712716 original size:77 final size:75
Alignment explanation
Indices: 4712589--4712813 Score: 267
Period size: 77 Copynumber: 3.0 Consensus size: 75
4712579 TCAATTTCCG
* * * * *
4712589 TTTTCAATTTCTGCCTTTCAAAAAAAACGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--CA
*
4712654 CGCGCTGAGCTA
64 CACGCTGAGCTA
*
4712666 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACA
*
4712731 CGCTGAGGTA
66 CGCTGAGCTA
* * *
4712741 TTGTCAATTTTTCGTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
1 TTTTCAA--TTTC-TGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG
*
4712804 -ACGCGCTGAG
62 CACACGCTGAG
4712814 GTATATTAAA
Statistics
Matches: 132, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
75 17 0.13
76 47 0.36
77 62 0.47
78 6 0.05
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (75 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACA
CGCTGAGCTA
Found at i:4712771 original size:549 final size:550
Alignment explanation
Indices: 4711720--4713826 Score: 3696
Period size: 549 Copynumber: 3.8 Consensus size: 550
4711710 ATGCCTTTCA
*
4711720 AAAAAAAAATCAACTCATATTGCGA-AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
* *
4711784 TTTCTGTTGTCAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCC
66 TTTCTGTTGTC--AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTC
* *
4711849 GAGGTATTTTCAATTTCCGTTTTTTC-AATTTCTGCCTTTC--AAAAAAAATCGACTCATATTGC
129 GAGGTATTTTCAATTTTCG-TTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGC
* * * * * *
4711911 GAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAT
193 GAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGTTAATTTCAATTTCTGT-TGTCAAAAAAAT
* * * * *
4711975 CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGATGTATTTTCAATTTCCGTT
254 CAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTT
4712040 TTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCA
319 TTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCA
4712105 CGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
384 CGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
4712170 AGCCTCGGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGA
449 AGCCTCGGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGA
4712235 GAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
514 GAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
4712272 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
*
4712337 TTTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
66 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
*
4712402 GGTATTTTCAATTTTCGTTTTTCAAATTTATGCCTTTC-AAAAAAAAATCAACTCATATTGCGAG
131 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
*
4712466 AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTTAATTTCTGTTGTCAAAAAAAAATCAACT
196 AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTC--AAAAAAATCAACT
4712531 CGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCG-TTTTCA
259 CGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCA
4712595 ATTTCTGCCTTTCAAAAAAAA-CGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGC
324 ATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGC
4712659 TGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
389 TGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4712724 CGGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGT
454 CGGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGT
*
4712789 GAGTTGAGCCTCAGGACGCGCTGAGGTATATT
519 GAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
*
4712821 AAAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
4712886 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
66 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
4712951 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAAATCAACTCATATTGCGA
131 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTC-AAAAAAAAAATCAACTCATATTGCGA
*
4713016 GAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTAAAAAAAAAAATCAA
195 GAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGT---CAAAAAAATCAA
*
4713081 CTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGTTTTT
257 CTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTT
4713146 CAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGC
322 CAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGC
*
4713211 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGC
387 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* *
4713276 CTCGGGACACGTTGAGGTATTATCAA-TTTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAG
452 CTCGGGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAG
4713340 GTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
517 GTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTT
4713374 -AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
**
4713438 TTTCTGTTGTCAAAAAAATCAACTTATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
66 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
*
4713503 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCATTCAAAAAAAAAATCAACTCATATTGCGAG
131 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
*
4713568 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC-AAAAAATCAACTCG
196 AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCG
* **
4713632 TATTGCGAGCGGCGAGTTGAGTCTCAGGTCACACGTTGAGGTATTTTCAATTTCCGTTTTTCAAT
261 TATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
* *
4713697 TTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCACT
326 TTCTGCCTTTC-AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCT
4713762 GAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
390 GAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
4713827 AGATCACACG
Statistics
Matches: 1498, Mismatches: 43, Indels: 32
0.95 0.03 0.02
Matches are distributed among these distances:
547 86 0.06
548 115 0.08
549 372 0.25
550 56 0.04
551 296 0.20
552 296 0.20
553 148 0.10
554 129 0.09
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (550 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAG
AGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCG
TATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAAT
TTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCGCTG
AGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
GGACACGCTGAGGTATTGTCAATTTTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGA
GTTGAGCCTCAGGACGCGCTGAGGTATTTT
Found at i:4712955 original size:138 final size:137
Alignment explanation
Indices: 4712685--4712939 Score: 399
Period size: 138 Copynumber: 1.9 Consensus size: 137
4712675 TCTGTCTTTC
*
4712685 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATT
* *** * *
4712750 TTTCGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGG
66 TCTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGG
4712815 TATATTA
131 TATATTA
4712822 AAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT-TCAA
1 AAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTGTCAA
*
4712886 TTTCT-GT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGG
64 TTTCTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG
4712940 TCACACGTCG
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
136 42 0.39
137 7 0.06
138 57 0.52
139 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (137 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAATT
TCTCGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCTGAGG
TATATTA
Found at i:4713102 original size:77 final size:78
Alignment explanation
Indices: 4712989--4713137 Score: 228
Period size: 77 Copynumber: 1.9 Consensus size: 78
4712979 TCTGCCTTTC
* * *
4712989 AAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGTTAATTT
1 AAAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTT
4713053 CAATTTCTGTTGT
66 CAATTTCTGTTGT
* * *
4713066 AAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
1 AAAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATT
4713131 TCAATTT
65 TCAATTT
4713138 TCGTTTTTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
77 44 0.69
79 20 0.31
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (78 bp):
AAAAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTT
CAATTTCTGTTGT
Found at i:4713167 original size:170 final size:168
Alignment explanation
Indices: 4712821--4713317 Score: 698
Period size: 169 Copynumber: 2.9 Consensus size: 168
4712811 GAGGTATATT
* *
4712821 AAAAAATAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAA
4712886 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
66 TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
4712951 GGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCTTTCAA
131 GGTATTTTCAATTTTCGTTTTTC-AATTTCTGCCTTTC-A
*
4712991 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGTTAATTTCAA
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAA
* * *
4713056 TTTCTGTTGTAAAAAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGC
66 TTTCTGTTGT---CAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGT
4713121 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTC-
128 CGAGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCA
* * * * *
4713161 -AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTT
1 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTT
* * * * *
4713224 CAATTTCTGTCTTTCAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GG-GACACG
63 CAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACG
* *
4713287 TTGAGGTATTATCAATTTTCGTATGTTTCAA
127 TCGAGGTATTTTCAATTTTCGT-T-TTTCAA
4713318 AAATCAACTC
Statistics
Matches: 297, Mismatches: 21, Indels: 19
0.88 0.06 0.06
Matches are distributed among these distances:
167 24 0.08
168 5 0.02
169 80 0.27
170 73 0.25
171 24 0.08
172 16 0.05
173 75 0.25
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (168 bp):
AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAA
TTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCGA
GGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCA
Found at i:4713239 original size:92 final size:92
Alignment explanation
Indices: 4713069--4713240 Score: 222
Period size: 92 Copynumber: 1.9 Consensus size: 92
4713059 CTGTTGTAAA
* * * *
4713069 AAAAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTCA
*
4713134 ATTTTCGTTTTTCAATTTCTGCCTTTC
66 ATTTTCGTCTTTCAATTTCTGCCTTTC
* * * * *
4713161 AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCGCTGAGCTATTTTC
1 AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-TCACACGCCGAGCTATTTTC
4713225 AA-TTTCTGTCTTTCAA
65 AATTTTC-GTCTTTCAA
4713241 AAAACTCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
91 6 0.09
92 62 0.91
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (92 bp):
AAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACGCCGAGCTATTTTCA
ATTTTCGTCTTTCAATTTCTGCCTTTC
Found at i:4713346 original size:75 final size:74
Alignment explanation
Indices: 4713145--4713371 Score: 267
Period size: 75 Copynumber: 3.0 Consensus size: 74
4713135 TTTTCGTTTT
** * * * *
4713145 TCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACG
1 TCAATTTCTATCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACG
* *
4713210 CGCTGAGCTATTT
62 CGCTGAGGTATTA
* * *
4713223 TCAATTTCTGTCTTTCAAAAAACTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGT
1 TCAATTTCTATCTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGC
4713288 TGAGGTATTA
65 TGAGGTATTA
* *
4713298 TCAATTTTCGTATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCG
1 TCAA-TTTC-TATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCG
4713362 CTGAGGTATT
64 CTGAGGTATT
4713372 TTAAAAAAAA
Statistics
Matches: 132, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
75 64 0.48
76 15 0.11
77 38 0.29
78 15 0.11
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31
Consensus pattern (74 bp):
TCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACGCGCT
GAGGTATTA
Found at i:4713387 original size:61 final size:61
Alignment explanation
Indices: 4713316--4713430 Score: 221
Period size: 61 Copynumber: 1.9 Consensus size: 61
4713306 CGTATGTTTC
*
4713316 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCGCTGAGGTATTTTAAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAA
4713377 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
4713431 ATTTCAATTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (61 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAAA
Found at i:4713649 original size:73 final size:74
Alignment explanation
Indices: 4713545--4713685 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 74
4713535 CCATTCAAAA
*
4713545 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCTGAGGTAATTTCAATT
4713609 TCTGTTGTC
66 TCTGTTGTC
* * * * *
4713618 AAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGTCTCAGGTCACACGTTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCTGAGGTAATTTCAAT
4713683 TTC
65 TTC
4713686 CGTTTTTCAA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
73 38 0.63
75 22 0.37
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (74 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCTGAGGTAATTTCAATT
TCTGTTGTC
Found at i:4713660 original size:168 final size:168
Alignment explanation
Indices: 4713374--4714024 Score: 841
Period size: 176 Copynumber: 3.8 Consensus size: 168
4713364 GAGGTATTTT
*
4713374 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCAA
* *
4713438 TTTCTGT-TGTCAAAAAAATCAACTTATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGTCG
65 TTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGTCG
*
4713502 AGGTATTTTCAATTTTCGTTTTTCAAATTTCTGCCATTCAA
130 AGGTATTTTCAATTTTCGTTTTTC-AATTTCTGCCTTTC-A
*
4713543 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCACACGCTGAGCTAATTTCAA
* * * * *
4713607 TTTCTGT-TGTC-AAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGTCTCAGGTCACACGTTG
65 TTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGTCG
*
4713670 AGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCA
130 AGGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCA
* * * *
4713709 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCTCACGCACTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACACG--CTGAGCTAATTTCA
* * *
4713774 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCC
64 ATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGTC
*
4713839 GAGGTATTTTCGTATTTTCAAATTCCGTTTTTCAATTTCTGCCTTTC-
129 GAGGTATTTTC--A-ATT----TT-CGTTTTTCAATTTCTGCCTTTCA
* * * * *
4713886 -AAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--CACACGCTGAGCTAATTTCA
* * * *
4713950 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC-AC
64 ATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGTC
4714014 TGAGGTATTTT
129 -GAGGTATTTT
4714025 TTTTTCAATT
Statistics
Matches: 437, Mismatches: 29, Indels: 25
0.89 0.06 0.05
Matches are distributed among these distances:
165 2 0.00
166 44 0.10
167 13 0.03
168 90 0.21
169 78 0.18
170 55 0.13
172 1 0.00
173 2 0.00
175 1 0.00
176 124 0.28
177 1 0.00
178 26 0.06
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (168 bp):
AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACACGCTGAGCTAATTTCAAT
TTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACGTCGA
GGTATTTTCAATTTTCGTTTTTCAATTTCTGCCTTTCA
Found at i:4713770 original size:93 final size:93
Alignment explanation
Indices: 4713618--4713788 Score: 218
Period size: 93 Copynumber: 1.8 Consensus size: 93
4713608 TTCTGTTGTC
* * * * ** *
4713618 AAAAAATCAACTCGTATTGCGAGCGGCGAGTTGAGTCTCAGGTCACACGTTGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACACTGAGCTATTTTCAAT
*
4713683 TTCCGTTTTTCAATTTCTGCCTTTCAAA
66 TTCCGTCTTTCAATTTCTGCCTTTCAAA
* * *
4713711 AAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT-TGGCTCACGCACTGAGCTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG-TCACACACTGAGCTATTTTCAA
*
4713775 TTTCTGTCTTTCAA
65 TTTCCGTCTTTCAA
4713789 AAAAATCAAC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
92 2 0.03
93 63 0.97
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (93 bp):
AAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGTCACACACTGAGCTATTTTCAAT
TTCCGTCTTTCAATTTCTGCCTTTCAAA
Found at i:4713847 original size:77 final size:78
Alignment explanation
Indices: 4713689--4713849 Score: 225
Period size: 77 Copynumber: 2.1 Consensus size: 78
4713679 CAATTTCCGT
** *
4713689 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGAT
* *
4713754 CACGCACTGAGCTA
65 CACACACCGAGCTA
* *
4713768 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
* *
4713832 ACACGCCGAGGTA
66 ACACACCGAGCTA
4713845 TTTTC
1 TTTTC
4713850 GTATTTTCAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 55 0.75
79 18 0.25
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (78 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGATC
ACACACCGAGCTA
Found at i:4713946 original size:99 final size:99
Alignment explanation
Indices: 4713768--4713948 Score: 281
Period size: 99 Copynumber: 1.8 Consensus size: 99
4713758 CACTGAGCTA
* *
4713768 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATCA
*
4713833 CACGCCGAGGTATTTTCGTATTTTCAAATTCCGT
66 CACGCCGAGCTATTTTCGTATTTTCAAATTCCGT
* ** *
4713867 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATCA
* *
4713932 CGCGCTGAGCTATTTTC
66 CACGCCGAGCTATTTTC
4713949 AATTTCTGTC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
99 73 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (99 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGCTATTTTCGTATTTTCAAATTCCGT
Found at i:4713994 original size:77 final size:77
Alignment explanation
Indices: 4713867--4714357 Score: 373
Period size: 77 Copynumber: 6.3 Consensus size: 77
4713857 CAAATTCCGT
* * *
4713867 TTTTCAATTTCTGCCTTTCAAAAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTTGGCTCA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
* *
4713932 CGCGCTGAGCTA
66 CACGCTGAGGTA
* *
4713944 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
*
4714008 ACACACTGAGGTA
65 ACACGCTGAGGTA
* * *
4714021 TTTTTTTTTCAATTTATATTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
1 -----TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG
*** *
4714084 AG-TCACATATTGAGGCA
61 -GCTCACACGCTGAGGTA
**
4714101 TTTTCAAAATCTG-CTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
1 TTTTCAATTTCTGTC-TTTC------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
** *
4714165 AGCC-T--CAAGACACGTTGAGGTA
54 AGCCTTGGC-TCACACGCTGAGGTA
* * *
4714187 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACC-T--C-A
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
* *
4714248 AGAAGCTGAGG--
65 ACACGCTGAGGTA
* * * * * *
4714259 TTTTCCATTTCTGTGTTTC-AAAAAATCAGCTCATATTGCGAGTGATGGAGTTGAGCCTTGACTC
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGT-GAGTTGAGCCTTGGCTC
*
4714323 ACACGCTAAGGTA
65 ACACGCTGAGGTA
* *
4714336 TTTTCAAATTCTGTTTTTCAAA
1 TTTTCAATTTCTGTCTTTCAAA
4714358 TTTTGTTTTT
Statistics
Matches: 336, Mismatches: 45, Indels: 65
0.75 0.10 0.15
Matches are distributed among these distances:
70 25 0.07
71 9 0.03
72 18 0.05
74 9 0.03
75 21 0.06
76 40 0.12
77 81 0.24
78 2 0.01
80 46 0.14
81 6 0.02
82 16 0.05
86 25 0.07
87 2 0.01
88 36 0.11
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGGTA
Found at i:4714072 original size:80 final size:81
Alignment explanation
Indices: 4713944--4714241 Score: 267
Period size: 80 Copynumber: 3.7 Consensus size: 81
4713934 CGCTGAGCTA
* *
4713944 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTATATCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
*
4714009 CACACTGAGGTATTTTT
65 CACATTGAGGTATTTTT
* *
4714026 TTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAG-TCA
1 TTTTCAATTTATATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCA
* *
4714089 CATATTGAGGCATTTTCAAAATCT
65 CACATTGAGGTA-TTT-----T-T
* * * *
4714113 GCTTTTCAAGTTA-A-GTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-G
1 --TTTTCAATTTATATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATC
*
4714174 ACACGTTGAGGTA-----
64 ACACATTGAGGTATTTTT
* * *
4714187 TTTTCAATTTCTGTCTTTCAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTATATCTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
4714242 ACCTCAAGAA
Statistics
Matches: 180, Mismatches: 20, Indels: 38
0.76 0.08 0.16
Matches are distributed among these distances:
72 9 0.05
74 4 0.02
76 33 0.18
80 46 0.26
81 8 0.04
82 16 0.09
86 11 0.06
87 8 0.04
88 35 0.19
89 10 0.06
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (81 bp):
TTTTCAATTTATATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCAC
ACATTGAGGTATTTTT
Done.