Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 175 of 318
Found at i:54346538 original size:22 final size:22
Alignment explanation
Indices: 54346498--54346552 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
54346488 CATTAAAAAC
54346498 GGGGCTTGGAATCACTTACTAT
1 GGGGCTTGGAATCACTTACTAT
54346520 GGGGCTTGGAATCACTTACTAT
1 GGGGCTTGGAATCACTTACTAT
*
54346542 GGAGCTTGGAA
1 GGGGCTTGGAA
54346553 GCTTGAAACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (22 bp):
GGGGCTTGGAATCACTTACTAT
Found at i:54348130 original size:15 final size:15
Alignment explanation
Indices: 54348104--54348159 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
54348094 CAAGGAAACC
54348104 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
54348119 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
54348134 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
54348149 GAATAAAGAAA
1 GAATAAAGAAA
54348160 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:54351006 original size:40 final size:40
Alignment explanation
Indices: 54350907--54351014 Score: 128
Period size: 39 Copynumber: 2.7 Consensus size: 40
54350897 AGTGATTATG
* * *** *
54350907 TCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATA
1 TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAA
*
54350947 TCC-GGCTAAGACCCGAAGGCAATGGTGCAAGTTACCAAA
1 TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAA
* *
54350986 TCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATCGTGC
54351015 TTGTGGTTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 32 0.55
40 26 0.45
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCAATCGTGCAAGTTACCAAA
Found at i:54351029 original size:40 final size:40
Alignment explanation
Indices: 54350864--54351030 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
54350854 CATTTGAATG
* * *
54350864 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
54350904 ATGTCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATT
* * * **
54350944 ATATCC-GGCTAAGACCCGAAGGCAATGGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
54350983 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
*
54351023 GTATCCGG
1 ATATCCGG
54351031 TTAAATCCCG
Statistics
Matches: 100, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
38 1 0.01
39 30 0.30
40 67 0.67
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:54354365 original size:46 final size:46
Alignment explanation
Indices: 54354298--54354473 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
54354288 TGTAACCCGC
* *
54354298 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
54354344 CCATAAGTGAACTCGGACTCAACTCAACTAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
54354394 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
54354437 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
54354474 TGCTCAATCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 63 0.58
47 28 0.26
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:54354413 original size:93 final size:93
Alignment explanation
Indices: 54354305--54354476 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
54354295 CGCCCATAAG
* *
54354305 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
54354370 ACTAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
54354398 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
54354463 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
54354477 TCAATCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:54357176 original size:40 final size:40
Alignment explanation
Indices: 54357049--54357178 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
54357039 ATGCTGGAAA
* *
54357049 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
54357089 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
54357129 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
54357169 TTATATCCGG
1 TTATATCCGG
54357179 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:54359819 original size:47 final size:46
Alignment explanation
Indices: 54359740--54359924 Score: 187
Period size: 47 Copynumber: 3.9 Consensus size: 46
54359730 AACATAGGAT
54359740 ATAATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCC
1 ATAA-GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCC
* * *
54359787 ATCAAGTCGATGCCATGTCCCAGACATAGTCTTACACTAACTTGTCAC
1 AT-AAGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATC-C
* *
54359835 ATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CA
1 ATA--AGT--CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ATCC
** *
54359886 ATGTGGTCGAT-ACATGTCCCAGACAT-GTCTTACACTAGC
1 AT-AAGTCGATGCCATGTCCCAGACATGGTCTTACACTAGC
54359925 ACACAATTAA
Statistics
Matches: 117, Mismatches: 12, Indels: 19
0.79 0.08 0.13
Matches are distributed among these distances:
46 12 0.10
47 55 0.47
48 9 0.08
49 3 0.03
50 2 0.02
51 34 0.29
52 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
ATAAGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATCC
Found at i:54362794 original size:20 final size:20
Alignment explanation
Indices: 54362761--54362865 Score: 81
Period size: 20 Copynumber: 5.2 Consensus size: 20
54362751 AAGGCATCGA
*
54362761 TGCATAACAAAGGCACCAAAG
1 TGCA-AACAGAGGCACCAAAG
*
54362782 TGCAAACAGAGGCA--AAAA
1 TGCAAACAGAGGCACCAAAG
* **
54362800 TGTCTAATCA-AGGCACCGTAG
1 TG-C-AAACAGAGGCACCAAAG
*
54362821 TGCAAACAGAGACACCAAAG
1 TGCAAACAGAGGCACCAAAG
* * *
54362841 TGTATACAGAGGCACCGAAG
1 TGCAAACAGAGGCACCAAAG
54362861 TGCAA
1 TGCAA
54362866 TCTCATACAA
Statistics
Matches: 63, Mismatches: 16, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
18 5 0.08
19 10 0.16
20 41 0.65
21 7 0.11
ACGTcount: A:0.43, C:0.22, G:0.23, T:0.12
Consensus pattern (20 bp):
TGCAAACAGAGGCACCAAAG
Found at i:54366644 original size:23 final size:23
Alignment explanation
Indices: 54366612--54366655 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
54366602 AATGCTTAGC
*
54366612 AAGTTTGTAAAACATAAAACAGT
1 AAGTTCGTAAAACATAAAACAGT
54366635 AAGTTCGTAAAACATAAAACA
1 AAGTTCGTAAAACATAAAACA
54366656 TAACTTACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.11, G:0.11, T:0.23
Consensus pattern (23 bp):
AAGTTCGTAAAACATAAAACAGT
Found at i:54373251 original size:54 final size:54
Alignment explanation
Indices: 54373169--54373276 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
54373159 TAAAACTTTC
54373169 AATCTGATTTATGGGAGAGATAATCTATCATTCAAGGATGTGAAAGGGAATCTT
1 AATCTGATTTATGGGAGAGATAATCTATCATTCAAGGATGTGAAAGGGAATCTT
*
54373223 AATCTGATTTATGGGAGAGATAATCTATCATTCGAGGATGTGAAAGGGAATCTT
1 AATCTGATTTATGGGAGAGATAATCTATCATTCAAGGATGTGAAAGGGAATCTT
54373277 CTAAGTAAGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.34, C:0.09, G:0.25, T:0.31
Consensus pattern (54 bp):
AATCTGATTTATGGGAGAGATAATCTATCATTCAAGGATGTGAAAGGGAATCTT
Found at i:54373274 original size:27 final size:27
Alignment explanation
Indices: 54373190--54373275 Score: 68
Period size: 27 Copynumber: 3.2 Consensus size: 27
54373180 TGGGAGAGAT
*
54373190 AATCTATCATTCAAGGATGTGAAAGGG
1 AATCTATCATTCGAGGATGTGAAAGGG
* ** * * **
54373217 AATCT-T-AATCTGATTTATGGGAGAGAT
1 AATCTATCATTC-GA-GGATGTGAAAGGG
54373244 AATCTATCATTCGAGGATGTGAAAGGG
1 AATCTATCATTCGAGGATGTGAAAGGG
54373271 AATCT
1 AATCT
54373276 TCTAAGTAAG
Statistics
Matches: 40, Mismatches: 15, Indels: 8
0.63 0.24 0.13
Matches are distributed among these distances:
25 3 0.08
26 2 0.05
27 29 0.73
28 3 0.08
29 3 0.08
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.30
Consensus pattern (27 bp):
AATCTATCATTCGAGGATGTGAAAGGG
Found at i:54377939 original size:40 final size:40
Alignment explanation
Indices: 54377880--54378031 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
54377870 CATTGGAATG
* * *
54377880 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATT
*
54377920 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCT-AGTTATT
* * **
54377960 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATT
* * *
54378000 AAATCCGGGTTAAGACCCGAAGGCAATCGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
54378032 GAATCACTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.04
40 89 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTTATT
Found at i:54377982 original size:80 final size:80
Alignment explanation
Indices: 54377880--54378030 Score: 212
Period size: 80 Copynumber: 1.9 Consensus size: 80
54377870 CATTGGAATG
* * ** *
54377880 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
54377945 TTCGTGTGAGTTGTT
66 ATCGTGTGAGTTGTT
* * * *
54377960 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
54378025 ATCGTG
66 ATCGTG
54378031 CGAATCACTA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 61 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGTGAGTTGTT
Found at i:54378048 original size:40 final size:40
Alignment explanation
Indices: 54377880--54378087 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
54377870 CATTGGAATG
* ** * * * *
54377880 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * ***
54377920 ATATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * *
54377960 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACT
* *
54378000 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * * * * *
54378040 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
54378080 ATATCCGG
1 ATATCCGG
54378088 TTAAATCCCG
Statistics
Matches: 136, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 133 0.98
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
Found at i:54378048 original size:80 final size:80
Alignment explanation
Indices: 54377884--54378066 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
54377874 GGAATGATAT
* ** * *
54377884 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* * *** *
54377949 TGTGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
54377964 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
54378029 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
54378044 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
54378067 CGAGCGAGTC
Statistics
Matches: 83, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
80 83 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:54380435 original size:30 final size:30
Alignment explanation
Indices: 54380378--54380468 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
54380368 AGACAAGTAA
* * * *
54380378 CTTGATATAAATTTCAACTTGTATGAGCATC
1 CTTGATAT-AATGTCAGCTTGTGTGAGCAAC
54380409 CTTGATATAATGTCAGCTTGTGTGAGCAAC
1 CTTGATATAATGTCAGCTTGTGTGAGCAAC
* * *
54380439 CCTAATATAATGTTAGCTTGTGTGAGCAAC
1 CTTGATATAATGTCAGCTTGTGTGAGCAAC
54380469 TTAATCACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 45 0.85
31 8 0.15
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (30 bp):
CTTGATATAATGTCAGCTTGTGTGAGCAAC
Found at i:54388805 original size:28 final size:28
Alignment explanation
Indices: 54388765--54388834 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
54388755 ATAGTAAGTC
*
54388765 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
54388793 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
54388821 CGCACACTTAGTGC
1 CGCACACTTAGTGC
54388835 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:54391730 original size:29 final size:29
Alignment explanation
Indices: 54391685--54391766 Score: 148
Period size: 29 Copynumber: 2.9 Consensus size: 29
54391675 AAGTTATACC
54391685 GATTTGGCTTCGGGCCATGAATATTGGCT
1 GATTTGGCTTCGGGCCATGAATATTGGCT
*
54391714 GATTTGGCTTCGAGCCATGAATATTGGCT
1 GATTTGGCTTCGGGCCATGAATATTGGCT
54391743 GATTTGGCTTCGGGCCATG-ATATT
1 GATTTGGCTTCGGGCCATGAATATT
54391767 AGTACTACGG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
28 5 0.10
29 46 0.90
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.35
Consensus pattern (29 bp):
GATTTGGCTTCGGGCCATGAATATTGGCT
Found at i:54395955 original size:5 final size:5
Alignment explanation
Indices: 54395945--54395972 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
54395935 ACCTTGTGTT
54395945 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTT
54395973 GTTACTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:54398142 original size:40 final size:40
Alignment explanation
Indices: 54398087--54398208 Score: 190
Period size: 40 Copynumber: 3.0 Consensus size: 40
54398077 AATTATTGAA
* * *
54398087 TGTTTTCACATTCGTGCCTCTATTTGTACTTCGGTACCCC
1 TGTTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
*
54398127 TGTTTGCACATTCGTGCCCCTGTTTGTACTTCGGTATCCC
1 TGTTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
* *
54398167 TGTTTGCACATACGTGCCCCTGTTTGTACTTCGGTACTCC
1 TGTTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
54398207 TG
1 TG
54398209 AACACATTAA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.11, C:0.30, G:0.19, T:0.40
Consensus pattern (40 bp):
TGTTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:54398146 original size:20 final size:20
Alignment explanation
Indices: 54398087--54398192 Score: 99
Period size: 20 Copynumber: 5.3 Consensus size: 20
54398077 AATTATTGAA
* *
54398087 TGTTTTCACATTCGTGCCTC
1 TGTTTGCACATTCGTGCCCC
* * *
54398107 TATTTGTAC-TTCGGTACCCC
1 TGTTTGCACATTC-GTGCCCC
54398127 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* **
54398147 TGTTTGTAC-TTCGGTATCCC
1 TGTTTGCACATTC-GTGCCCC
*
54398167 TGTTTGCACATACGTGCCCC
1 TGTTTGCACATTCGTGCCCC
54398187 TGTTTG
1 TGTTTG
54398193 TACTTCGGTA
Statistics
Matches: 67, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
19 6 0.09
20 56 0.84
21 5 0.07
ACGTcount: A:0.11, C:0.29, G:0.19, T:0.41
Consensus pattern (20 bp):
TGTTTGCACATTCGTGCCCC
Found at i:54398208 original size:20 final size:20
Alignment explanation
Indices: 54398109--54398208 Score: 105
Period size: 20 Copynumber: 5.0 Consensus size: 20
54398099 CGTGCCTCTA
54398109 TTTGTACTTCGGTACCCCTG
1 TTTGTACTTCGGTACCCCTG
* *
54398129 TTTGCACATTC-GTGCCCCTG
1 TTTGTAC-TTCGGTACCCCTG
*
54398149 TTTGTACTTCGGTATCCCTG
1 TTTGTACTTCGGTACCCCTG
* * *
54398169 TTTGCACATAC-GTGCCCCTG
1 TTTGTAC-TTCGGTACCCCTG
*
54398189 TTTGTACTTCGGTACTCCTG
1 TTTGTACTTCGGTACCCCTG
54398209 AACACATTAA
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
19 5 0.08
20 53 0.84
21 5 0.08
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (20 bp):
TTTGTACTTCGGTACCCCTG
Found at i:54398559 original size:13 final size:13
Alignment explanation
Indices: 54398541--54398568 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
54398531 TTTCTTCGTT
54398541 TTTTTTGGTATAA
1 TTTTTTGGTATAA
54398554 TTTTTTGGTATAA
1 TTTTTTGGTATAA
54398567 TT
1 TT
54398569 ATAATGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (13 bp):
TTTTTTGGTATAA
Found at i:54407792 original size:40 final size:40
Alignment explanation
Indices: 54407748--54407860 Score: 154
Period size: 42 Copynumber: 2.8 Consensus size: 40
54407738 TAATTATTGA
* * *
54407748 TGATTTCACATACGTGCCCCTATTTGTACTTCGATACCCC
1 TGATTGCACATAAGTGCCCCTGTTTGTACTTCGATACCCC
* *
54407788 TGATTGCACACGTATGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACA--TAAGTGCCCCTGTTTGTACTTCGATACCCC
*
54407830 TGAATGCACATAAGTGCCCCTGTTTGTACTT
1 TGATTGCACATAAGTGCCCCTGTTTGTACTT
54407861 TTGTATTCCC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 29 0.45
42 36 0.55
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.35
Consensus pattern (40 bp):
TGATTGCACATAAGTGCCCCTGTTTGTACTTCGATACCCC
Found at i:54407889 original size:41 final size:40
Alignment explanation
Indices: 54407754--54407879 Score: 135
Period size: 42 Copynumber: 3.1 Consensus size: 40
54407744 TTGATGATTT
* * * * *
54407754 CACATACGTGCCCCTATTTGTACTTCGATACCCCTGATTG
1 CACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTAAATG
* *
54407794 CACACGTATGTGCCCCTGTTTGTACTTCGGTACCCCTGAATG
1 CACA--TAAGTGCCCCTGTTTGTACTTCGGTACCCCTAAATG
** *
54407836 CACATAAGTGCCCCTGTTTGTACTTTTGTATTCCCTAAATG
1 CACATAAGTGCCCCTGTTTGTACTTCGGTA-CCCCTAAATG
54407877 CAC
1 CAC
54407880 TTACATGCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
40 27 0.36
41 11 0.15
42 36 0.49
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (40 bp):
CACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTAAATG
Found at i:54417388 original size:22 final size:22
Alignment explanation
Indices: 54417339--54417396 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
54417329 ATGAACAGTT
*
54417339 TCACACGCCCGTGTGGTCTAGA
1 TCACACGCCCGTGTGGTCCAGA
* * *
54417361 TGACACGCCCGTGTGTTCCATA
1 TCACACGCCCGTGTGGTCCAGA
54417383 TCACA--CCCGTGTGG
1 TCACACGCCCGTGTGG
54417397 GCACACTGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 8 0.27
22 22 0.73
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (22 bp):
TCACACGCCCGTGTGGTCCAGA
Found at i:54418664 original size:12 final size:12
Alignment explanation
Indices: 54418639--54418672 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
54418629 AGAATACACC
* *
54418639 GTAACGGTAACA
1 GTAACAGTAGCA
54418651 GTAACAGTAGCA
1 GTAACAGTAGCA
54418663 GTAACAGTAG
1 GTAACAGTAG
54418673 TGGTACACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (12 bp):
GTAACAGTAGCA
Found at i:54421985 original size:17 final size:19
Alignment explanation
Indices: 54421943--54421986 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
54421933 ATGAAATTTT
*
54421943 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
54421962 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
54421980 AA-TATTA
1 AATTATTA
54421987 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:54423790 original size:28 final size:28
Alignment explanation
Indices: 54423759--54423827 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
54423749 GCATAGATCA
54423759 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
54423787 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
54423815 CGATA-TACCCCTA
1 CGAAATTACCCCTA
54423828 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:54430257 original size:40 final size:39
Alignment explanation
Indices: 54430146--54430296 Score: 151
Period size: 40 Copynumber: 3.8 Consensus size: 39
54430136 TATAATCAGT
* * *
54430146 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
54430186 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
54430226 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
54430266 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
54430297 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 15 0.16
40 80 0.84
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:54430280 original size:80 final size:79
Alignment explanation
Indices: 54430146--54430296 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
54430136 TATAATCAGT
*
54430146 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
54430211 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
54430226 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
54430289 CCGGATAT
64 CCGGATAT
54430297 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:54431138 original size:17 final size:19
Alignment explanation
Indices: 54431115--54431160 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
54431105 AAGAAGCATG
54431115 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
54431133 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
54431151 AATCATGCTC
1 AATCATGCTC
54431161 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:54438166 original size:40 final size:40
Alignment explanation
Indices: 54438121--54438287 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
54438111 CGGAATATAA
54438121 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
54438161 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
54438201 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
54438241 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
54438280 CCGGATAT
1 CCGGATAT
54438288 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:54439129 original size:17 final size:19
Alignment explanation
Indices: 54439106--54439151 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
54439096 AAGAAGCATG
54439106 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
54439124 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
54439142 AATCATGCTC
1 AATCATGCTC
54439152 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:54441418 original size:10 final size:10
Alignment explanation
Indices: 54441403--54441431 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
54441393 ATTAATGTCG
54441403 TATATATGTA
1 TATATATGTA
54441413 TATATATGTA
1 TATATATGTA
54441423 TATATATGT
1 TATATATGT
54441432 GCATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (10 bp):
TATATATGTA
Found at i:54448665 original size:27 final size:28
Alignment explanation
Indices: 54448609--54448678 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
54448599 AAACTTGTAC
54448609 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
54448637 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
54448664 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
54448679 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:54448689 original size:27 final size:27
Alignment explanation
Indices: 54448609--54448690 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
54448599 AAACTTGTAC
* *
54448609 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
54448637 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
54448664 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
54448691 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:54456692 original size:27 final size:28
Alignment explanation
Indices: 54456636--54456705 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
54456626 AAACTTGTAC
54456636 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
54456664 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
54456691 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
54456706 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:54456716 original size:27 final size:27
Alignment explanation
Indices: 54456636--54456717 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
54456626 AAACTTGTAC
* *
54456636 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
54456664 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
54456691 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
54456718 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:54468896 original size:14 final size:14
Alignment explanation
Indices: 54468877--54468905 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
54468867 TTTTTTACTT
54468877 TGTTATATAGATTA
1 TGTTATATAGATTA
54468891 TGTTATATAGATTA
1 TGTTATATAGATTA
54468905 T
1 T
54468906 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:54468919 original size:20 final size:20
Alignment explanation
Indices: 54468894--54468934 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
54468884 TAGATTATGT
* *
54468894 TATATAGATTATTATTTATC
1 TATATAGAGTATTATTAATC
54468914 TATATAGAGTATTATTAATC
1 TATATAGAGTATTATTAATC
54468934 T
1 T
54468935 TCACGAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (20 bp):
TATATAGAGTATTATTAATC
Found at i:54470079 original size:24 final size:21
Alignment explanation
Indices: 54470045--54470133 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
54470035 ACAAAAAAGA
*
54470045 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC---TCTT
*
54470069 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
**
54470090 TTTGTCCAAGTTGCTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
* *
54470111 TTTGTCTAACTCACTTC-CTT
1 TTTGTCCAAGTCACTTCTCTT
54470131 TTT
1 TTT
54470134 TCTTTGTGAG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 37 0.64
24 15 0.26
ACGTcount: A:0.12, C:0.24, G:0.10, T:0.54
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTCTT
Found at i:54470131 original size:20 final size:21
Alignment explanation
Indices: 54470065--54470133 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
54470055 TCACTTCGTT
54470065 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
54470086 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
54470107 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
54470128 -CTTTTT
1 TCTTTTT
54470134 TCTTTGTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.12, C:0.25, G:0.09, T:0.55
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:54476258 original size:25 final size:25
Alignment explanation
Indices: 54476229--54476276 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
54476219 TTATAATATG
* *
54476229 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
54476254 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
54476277 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:54476327 original size:9 final size:9
Alignment explanation
Indices: 54476315--54476371 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
54476305 TTTGATAAAC
54476315 ATGATATGT
1 ATGATATGT
*
54476324 ATGATATGCAC
1 ATGATATG--T
*
54476335 ATGACATGT
1 ATGATATGT
*
54476344 ATGATATGCAC
1 ATGATATG--T
54476355 ATGATATGT
1 ATGATATGT
54476364 ATGATATG
1 ATGATATG
54476372 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:54476338 original size:20 final size:20
Alignment explanation
Indices: 54476313--54476383 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
54476303 ATTTTGATAA
54476313 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
54476333 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
54476353 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
54476373 ACATGAGATGT
1 ACATGATATGT
54476384 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:54476360 original size:11 final size:11
Alignment explanation
Indices: 54476324--54476378 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
54476314 CATGATATGT
54476324 ATGATATGCAC
1 ATGATATGCAC
* *
54476335 ATGACATG--T
1 ATGATATGCAC
54476344 ATGATATGCAC
1 ATGATATGCAC
*
54476355 ATGATATG--T
1 ATGATATGCAC
54476364 ATGATATGCAC
1 ATGATATGCAC
54476375 ATGA
1 ATGA
54476379 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:54476460 original size:23 final size:23
Alignment explanation
Indices: 54476430--54476572 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
54476420 AGGAAGTGCA
54476430 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
54476453 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
54476477 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
54476500 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
54476524 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
54476547 AAAGGGCTTTTGCACCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
54476570 AAA
1 AAA
54476573 AGAGGCAAGG
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
23 66 0.61
24 42 0.39
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:54476497 original size:47 final size:47
Alignment explanation
Indices: 54476428--54476574 Score: 249
Period size: 47 Copynumber: 3.1 Consensus size: 47
54476418 GGAGGAAGTG
54476428 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
54476475 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
54476522 CAAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTTTGCACCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
54476569 TAAAAG
1 CAAAAG
54476575 AGGCAAGGCC
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:54477428 original size:47 final size:47
Alignment explanation
Indices: 54477364--54477459 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
54477354 GATATAACAA
54477364 AGTGTGGCTATGGTTGTGGGCATGTCTAGGATTGGATCCAATCAAAG
1 AGTGTGGCTATGGTTGTGGGCATGTCTAGGATTGGATCCAATCAAAG
54477411 AGTGTGGCTATGGTTGTGGGCATGTCTAGGATTGGATCCAATCAAAG
1 AGTGTGGCTATGGTTGTGGGCATGTCTAGGATTGGATCCAATCAAAG
54477458 AG
1 AG
54477460 CTTGGTACTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.29
Consensus pattern (47 bp):
AGTGTGGCTATGGTTGTGGGCATGTCTAGGATTGGATCCAATCAAAG
Found at i:54484322 original size:19 final size:20
Alignment explanation
Indices: 54484278--54484314 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
54484268 AGGGACTAAA
*
54484278 ATGAAAAGTTGTAAAATTAG
1 ATGAAAAGTTCTAAAATTAG
54484298 ATGAAAA-TTCTAAAATT
1 ATGAAAAGTTCTAAAATT
54484315 TTATGAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (20 bp):
ATGAAAAGTTCTAAAATTAG
Found at i:54486106 original size:25 final size:25
Alignment explanation
Indices: 54486071--54486124 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
54486061 TTAACCACAC
*
54486071 GGCCTAGGACACGGGCGTGTAGCAT
1 GGCCTAAGACACGGGCGTGTAGCAT
54486096 GGCCTAAGACACGGGCGTGTAGCAT
1 GGCCTAAGACACGGGCGTGTAGCAT
54486121 GGCC
1 GGCC
54486125 GTGTGTGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.20, C:0.26, G:0.39, T:0.15
Consensus pattern (25 bp):
GGCCTAAGACACGGGCGTGTAGCAT
Found at i:54492000 original size:40 final size:40
Alignment explanation
Indices: 54491955--54492103 Score: 230
Period size: 40 Copynumber: 3.7 Consensus size: 40
54491945 ACTATTTGCT
54491955 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
54491995 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
54492035 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCA-CA
54492075 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
54492104 CATCCGAATA
Statistics
Matches: 100, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:54499115 original size:40 final size:40
Alignment explanation
Indices: 54499060--54499223 Score: 188
Period size: 40 Copynumber: 4.1 Consensus size: 40
54499050 TGAATGATAC
* * *
54499060 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
54499100 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
54499140 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
54499180 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
54499220 CCGG
1 CCGG
54499224 TTAAATCCCG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 97 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:54499193 original size:80 final size:80
Alignment explanation
Indices: 54499060--54499237 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 80
54499050 TGAATGATAC
* * * * * *
54499060 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC-ATTC
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATT-
*
54499124 GTGCGAGTTGTTATAT
65 GTGCGAGTGGTTATAT
* * *
54499140 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
**
54499205 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
54499220 CC-GGTTAA-ATCCCGAAGG
1 CCGGGTTAAGA-CCCGAAGG
54499238 TACGTGACTC
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
79 14 0.17
80 66 0.79
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGTTAAGACCCGAAGGCAATTATGCAAGTGACTAAATCCGGGCTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:54505022 original size:39 final size:41
Alignment explanation
Indices: 54504964--54505144 Score: 221
Period size: 39 Copynumber: 4.6 Consensus size: 41
54504954 CGGATGATAA
* *
54504964 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* * * *
54505004 TCAGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA-TTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
*
54505043 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
*
54505083 CCGGGCTAA-TCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
* * *
54505122 CCGGGTTATGTCCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
54505145 CAAGCGAGTA
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
38 3 0.02
39 64 0.52
40 54 0.44
41 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATAT
Found at i:54505097 original size:79 final size:79
Alignment explanation
Indices: 54504960--54505162 Score: 248
Period size: 79 Copynumber: 2.6 Consensus size: 79
54504950 TATTCGGATG
* * * *
54504960 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTCAGGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-TCCAGGCTAAGCCCGAAGGCA
*
54505024 ATTGTGCGAGTTATT
65 ATTGTGCGAGTTACT
* * * *
54505039 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCGGGCTAATCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCAGGCTAAGCCCGAAGGCAA
54505104 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * * **
54505118 ATAACCGGGTTATGTCCTGAAGGCATTCAAGCGAG-TAGCTATATC
1 ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATATC
54505163 TGGTTAAATT
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
78 2 0.02
79 104 0.97
80 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATATCCAGGCTAAGCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:54506669 original size:40 final size:40
Alignment explanation
Indices: 54506613--54506761 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
54506603 ACTACTTGCT
54506613 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
54506653 CAAATGCCTTTTGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
54506693 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
54506733 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
54506762 CATCCGAATA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 94 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:54510552 original size:2 final size:2
Alignment explanation
Indices: 54510545--54510575 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
54510535 TGTGTCTTGG
*
54510545 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
54510576 GTTGATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:54532007 original size:58 final size:58
Alignment explanation
Indices: 54531912--54532030 Score: 184
Period size: 58 Copynumber: 2.1 Consensus size: 58
54531902 AGCCATCTAG
* *
54531912 TACTTGGAGATTTTTCTCGAAATTATAAGGTACGAATATGAATTCACAATCTATTTTA
1 TACTTAGAGATTTTTCTCAAAATTATAAGGTACGAATATGAATTCACAATCTATTTTA
* ** *
54531970 TACTTAGAGATTTTTCTCAAAATTATAAGTTGGGAATATGAATTCGCAATCTATTTTA
1 TACTTAGAGATTTTTCTCAAAATTATAAGGTACGAATATGAATTCACAATCTATTTTA
54532028 TAC
1 TAC
54532031 CGCAATCTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (58 bp):
TACTTAGAGATTTTTCTCAAAATTATAAGGTACGAATATGAATTCACAATCTATTTTA
Found at i:54532036 original size:17 final size:17
Alignment explanation
Indices: 54532014--54532047 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
54532004 AATATGAATT
54532014 CGCAATCTATTTTATAC
1 CGCAATCTATTTTATAC
*
54532031 CGCAATCTGTTTTATAC
1 CGCAATCTATTTTATAC
54532048 TAGAGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (17 bp):
CGCAATCTATTTTATAC
Found at i:54532079 original size:73 final size:75
Alignment explanation
Indices: 54531958--54532103 Score: 233
Period size: 73 Copynumber: 2.0 Consensus size: 75
54531948 TATGAATTCA
*
54531958 CAATCTATTTTATACTTAGAGATTTTTCTCAAAATTATAAGTTGGGAATATGAATTCGCAATCTA
1 CAATCTATTTTATACTTAGAGATTTTTATCAAAATTATAAGTTGGGAATATGAATTCGCAATCTA
54532023 TTTTATACCG
66 TTTTATACCG
* ** *
54532033 CAATCTGTTTTATAC-TAGAGA-TTTTATCAAAATTATAAGTTGGGAATATGAATTTTCTATCTA
1 CAATCTATTTTATACTTAGAGATTTTTATCAAAATTATAAGTTGGGAATATGAATTCGCAATCTA
54532096 TTTTATAC
66 TTTTATAC
54532104 TTAGAGATTT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 46 0.70
74 6 0.09
75 14 0.21
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.43
Consensus pattern (75 bp):
CAATCTATTTTATACTTAGAGATTTTTATCAAAATTATAAGTTGGGAATATGAATTCGCAATCTA
TTTTATACCG
Found at i:54532126 original size:58 final size:57
Alignment explanation
Indices: 54532035--54532162 Score: 195
Period size: 58 Copynumber: 2.2 Consensus size: 57
54532025 TTATACCGCA
* * *
54532035 ATCTGTTTTATAC-TAGAGATTTTATCAAAATTATAAGTTGGGAATATGAATTTTCT
1 ATCTGTTTTATACTTAGAGATTTTATCAAAATTATAAGTTAGGAATATGAATTTGCG
* *
54532091 ATCTATTTTATACTTAGAGATTTTTCTCAAAATTATAAGTTAGGAATATGAATTTGCG
1 ATCTGTTTTATACTTAGAGA-TTTTATCAAAATTATAAGTTAGGAATATGAATTTGCG
54532149 ATCTGTTTTATACT
1 ATCTGTTTTATACT
54532163 GATACTACAA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 12 0.19
57 6 0.09
58 46 0.72
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (57 bp):
ATCTGTTTTATACTTAGAGATTTTATCAAAATTATAAGTTAGGAATATGAATTTGCG
Found at i:54532290 original size:69 final size:69
Alignment explanation
Indices: 54532190--54532443 Score: 243
Period size: 69 Copynumber: 3.7 Consensus size: 69
54532180 TTTTACTCTC
* * * *
54532190 GATATTAC-ACTTGGGAGCTTTGCTCAT-GCTAACTGTTTTGGAGGCTGCGGCTCTTCACCTGTG
1 GATATTACAAC-TGGGAGCTTTGTTC-TCGCTAACTATTTTAGAGGCTGCGGCTCTTCAGCTGTG
54532253 AGCCTT
64 AGCCTT
* * ** * *
54532259 GATATTACAACTAGAAGCTTTGTTCTCGCTAACTATTTTAGAGGCTATGACTCTTCGGCTGTGAG
1 GATATTACAACTGGGAGCTTTGTTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCAGCTGTGAG
54532324 CCTT
66 CCTT
* * *
54532328 GATCTTACAACTGGGAGCTTT-TCTCTCAG-TAACTGTTTTTA-AGGCTGCGGCTC-TCTGCT-T
1 GATATTACAACTGGGAGCTTTGT-TCTC-GCTAACT-ATTTTAGAGGCTGCGGCTCTTCAGCTGT
*
54532388 ACGAGCCCT
63 --GAGCCTT
* * *
54532397 GATATTACAATTGGGAGCTTTGCTCTTGCTAACTATTTTAGAGGCTG
1 GATATTACAACTGGGAGCTTTGTTCTCGCTAACTATTTTAGAGGCTG
54532444 TGGCGCCTGC
Statistics
Matches: 151, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
67 1 0.01
68 13 0.09
69 129 0.85
70 8 0.05
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (69 bp):
GATATTACAACTGGGAGCTTTGTTCTCGCTAACTATTTTAGAGGCTGCGGCTCTTCAGCTGTGAG
CCTT
Found at i:54544819 original size:40 final size:39
Alignment explanation
Indices: 54544764--54544950 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 39
54544754 GAATGATACA
* * *
54544764 CGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATATC
*
54544804 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
* *
54544844 TGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
* * *
54544884 CGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATATC
* *
54544924 CGGGTTAAGACCCGAAGGCAATTGTGC
1 CGGGCTAAGACCCGAAGGCATTTGTGC
54544951 TTGTGGTTAT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 128 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATATC
Found at i:54544960 original size:80 final size:80
Alignment explanation
Indices: 54544764--54544963 Score: 249
Period size: 80 Copynumber: 2.5 Consensus size: 80
54544754 GAATGATACA
* * * *
54544764 CGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCGT
1 CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
* *** *
54544829 GCGAGTTGTTATATC
66 GCAAGTTACCAAATC
* * * *
54544844 TGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
54544908 TGCAAGTTACCAAATC
65 TGCAAGTTACCAAATC
* *
54544924 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATC
54544964 TGGCTAAATT
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 2 0.02
80 95 0.95
81 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTACCAAATC
Found at i:54552964 original size:40 final size:39
Alignment explanation
Indices: 54552909--54553115 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 39
54552899 GAATGATACA
* * *
54552909 CGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATATC
*
54552949 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
* *
54552989 CGGGCTAAGACGCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATATC
* * * *
54553029 CGGGCTAAAACCCGAAGGCATTTGTGCAAGT-TACCAAATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATATC
* * **
54553069 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATATC
54553109 C-GGCTAA
1 CGGGCTAA
54553116 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 133 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATATC
Found at i:54561495 original size:19 final size:19
Alignment explanation
Indices: 54561471--54561507 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
54561461 CCATGCATTA
54561471 AACTAAGACAAATTAAATG
1 AACTAAGACAAATTAAATG
*
54561490 AACTAAGACAACTTAAAT
1 AACTAAGACAAATTAAAT
54561508 TGCTGTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.14, G:0.08, T:0.22
Consensus pattern (19 bp):
AACTAAGACAAATTAAATG
Found at i:54564441 original size:11 final size:10
Alignment explanation
Indices: 54564424--54564463 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
54564414 TTGTTTTCAC
54564424 GAATTTTTTT
1 GAATTTTTTT
54564434 GAATTTTTTT
1 GAATTTTTTT
*
54564444 GAAAATTTTTT
1 G-AATTTTTTT
54564455 GAATTTTTT
1 GAATTTTTT
54564464 CTTCACTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (10 bp):
GAATTTTTTT
Found at i:54567739 original size:5 final size:5
Alignment explanation
Indices: 54567715--54567754 Score: 55
Period size: 5 Copynumber: 7.8 Consensus size: 5
54567705 GGATGTAATA
54567715 AAAAT AAAATT AAAGA- AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAA-T AAA-AT AAAAT AAAAT AAAAT AAAAT AAAA
54567755 AGTAAGTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 26 0.81
6 4 0.12
7 1 0.03
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:54567755 original size:16 final size:16
Alignment explanation
Indices: 54567711--54567754 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
54567701 CTAAGGATGT
*
54567711 AATAAAAATAAAATTA
1 AATAAAAATAAAATAA
*
54567727 AAGAAAAATAAAATAA
1 AATAAAAATAAAATAA
54567743 AAT-AAAATAAAA
1 AATAAAAATAAAA
54567755 AGTAAGTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 9 0.36
16 16 0.64
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:54573698 original size:14 final size:15
Alignment explanation
Indices: 54573681--54573711 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
54573671 TTAAAGCAAG
54573681 AATTAAGAAC-TCAT
1 AATTAAGAACTTCAT
54573695 AATTAAGAACTTCAT
1 AATTAAGAACTTCAT
54573710 AA
1 AA
54573712 AATAATAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (15 bp):
AATTAAGAACTTCAT
Found at i:54574800 original size:16 final size:16
Alignment explanation
Indices: 54574779--54574815 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
54574769 CACATATTTA
54574779 TAGCCTAAAACATGGC
1 TAGCCTAAAACATGGC
54574795 TAGCCTAAAACATGGC
1 TAGCCTAAAACATGGC
54574811 TAGCC
1 TAGCC
54574816 GAATAGGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (16 bp):
TAGCCTAAAACATGGC
Found at i:54575723 original size:19 final size:19
Alignment explanation
Indices: 54575699--54575735 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
54575689 CCATGCATTA
54575699 AACTAAGACAAATTAAATG
1 AACTAAGACAAATTAAATG
*
54575718 AACTAAGACAACTTAAAT
1 AACTAAGACAAATTAAAT
54575736 TGCTGTAGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.57, C:0.14, G:0.08, T:0.22
Consensus pattern (19 bp):
AACTAAGACAAATTAAATG
Found at i:54577401 original size:21 final size:19
Alignment explanation
Indices: 54577367--54577421 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 19
54577357 CACACAAAAA
*
54577367 TAAAAATTTTAAAAATGAC
1 TAAAAATTTTAAAAATAAC
54577386 TAAAAATCTATTAAAAATAAC
1 TAAAAAT-T-TTAAAAATAAC
* *
54577407 AAAAAAATTTAAAAA
1 TAAAAATTTTAAAAA
54577422 AGTTCAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 14 0.45
20 2 0.06
21 15 0.48
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.27
Consensus pattern (19 bp):
TAAAAATTTTAAAAATAAC
Found at i:54577650 original size:17 final size:18
Alignment explanation
Indices: 54577625--54577670 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
54577615 AATATATAAT
*
54577625 AAAAT-AAAATCCTAAC-
1 AAAATAAAAATCCAAACA
*
54577641 AAAATAAAAATCGAAACA
1 AAAATAAAAATCCAAACA
54577659 AAAATAAAAATC
1 AAAATAAAAATC
54577671 ATCCCAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 5 0.19
17 9 0.35
18 12 0.46
ACGTcount: A:0.70, C:0.13, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAATAAAAATCCAAACA
Found at i:54581792 original size:15 final size:17
Alignment explanation
Indices: 54581758--54581794 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
54581748 GAATTTAAAC
54581758 AAATAAAGAAAAATTAA
1 AAATAAAGAAAAATTAA
*
54581775 AAATAAA-AGAAA-TAA
1 AAATAAAGAAAAATTAA
54581790 AAATA
1 AAATA
54581795 TCATATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 8 0.42
16 4 0.21
17 7 0.37
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (17 bp):
AAATAAAGAAAAATTAA
Found at i:54586370 original size:20 final size:19
Alignment explanation
Indices: 54586324--54586373 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
54586314 TGAATATGTA
*
54586324 GATAAAAGCATTAGTGAGG
1 GATAAAAGCATTAGCGAGG
*
54586343 GTTAAAAGCATT-GCGAGTG
1 GATAAAAGCATTAGCGAG-G
54586362 TGATAAAAGCAT
1 -GATAAAAGCAT
54586374 AGAACGGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 4 0.15
19 12 0.46
20 10 0.38
ACGTcount: A:0.40, C:0.08, G:0.28, T:0.24
Consensus pattern (19 bp):
GATAAAAGCATTAGCGAGG
Found at i:54589253 original size:40 final size:39
Alignment explanation
Indices: 54589129--54589293 Score: 154
Period size: 40 Copynumber: 4.1 Consensus size: 39
54589119 CGGAGTTTAA
** * *
54589129 CCGGATATAGCT-ACTCGTTCAAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGC
* * * *
54589169 CCAGTTATAGTAGCTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGC
* *
54589209 CCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGA-CTTAGC
* *
54589249 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGAACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGG-ACTTAGC
54589289 CCGGA
1 CCGGA
54589294 CATCATTCGA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 4 0.04
40 90 0.87
41 9 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGC
Found at i:54598221 original size:25 final size:25
Alignment explanation
Indices: 54598156--54598221 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
54598146 ACGCGAGAAC
*
54598156 AATGCTCACACAAGCTGTGATGGTA
1 AATGCTCACACAAGCTGTAATGGTA
* * *
54598181 AAAGCTCAGACGAGCTGTAACT-GTA
1 AATGCTCACACAAGCTGTAA-TGGTA
54598206 AATGCTCACACAAGCT
1 AATGCTCACACAAGCT
54598222 ATGAAATAGG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
25 32 0.97
26 1 0.03
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (25 bp):
AATGCTCACACAAGCTGTAATGGTA
Found at i:54600108 original size:27 final size:27
Alignment explanation
Indices: 54600052--54600111 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
54600042 TGTGTCCCCA
* * **
54600052 TGTTTAATGTCCTGGTAGACTCTCTTG
1 TGTTTAATGTCCTGATAGACTATCCCG
*
54600079 TGTTTACTGTCCTGATAGACTATCCCG
1 TGTTTAATGTCCTGATAGACTATCCCG
54600106 TGTTTA
1 TGTTTA
54600112 TTATCCCATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
TGTTTAATGTCCTGATAGACTATCCCG
Found at i:54606002 original size:29 final size:29
Alignment explanation
Indices: 54605969--54606158 Score: 317
Period size: 29 Copynumber: 6.6 Consensus size: 29
54605959 GTGACGAGAT
54605969 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
54605998 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
54606027 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
54606056 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
54606085 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
54606114 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
54606143 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
54606159 AGTTCGGAGG
Statistics
Matches: 152, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 152 1.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:54607742 original size:31 final size:32
Alignment explanation
Indices: 54607704--54607771 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 32
54607694 TTACAGAATT
*
54607704 AGAATCAGTATCAGGTAATAGAATC-AAAATC
1 AGAATCAGTATCAGGTAACAGAATCAAAAATC
54607735 AGAATCAGTATCAGGTAACAGAATCAAAAATC
1 AGAATCAGTATCAGGTAACAGAATCAAAAATC
54607767 AGAAT
1 AGAAT
54607772 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 24 0.69
32 11 0.31
ACGTcount: A:0.50, C:0.13, G:0.16, T:0.21
Consensus pattern (32 bp):
AGAATCAGTATCAGGTAACAGAATCAAAAATC
Found at i:54608204 original size:27 final size:27
Alignment explanation
Indices: 54608174--54608342 Score: 241
Period size: 27 Copynumber: 6.3 Consensus size: 27
54608164 AGGGCAAACT
* * *
54608174 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
54608201 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
54608228 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
54608255 GGTAATTCTACCCTAC-AGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
54608282 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
54608309 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
54608336 GGTAATT
1 GGTAATT
54608343 TCAAAAATCA
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.02
27 122 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:54608240 original size:54 final size:54
Alignment explanation
Indices: 54608178--54608369 Score: 253
Period size: 54 Copynumber: 3.6 Consensus size: 54
54608168 CAAACTGGTA
* * *
54608178 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
*
54608231 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
* * * *
54608285 AATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
* ***
54608339 AATTTCAAAAAT-CAAGGGTATTTTGGTAATT
1 -ATTTCTACCCTACAAGGGTATTTTGGTAATT
54608370 TTACAAACCA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
53 4 0.03
54 111 0.92
55 6 0.05
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGT
Found at i:54608354 original size:27 final size:27
Alignment explanation
Indices: 54608324--54608493 Score: 142
Period size: 27 Copynumber: 6.3 Consensus size: 27
54608314 TTCTACCCTA
* * * *
54608324 CAAGGGTATTTCGGTAATTTCAAAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
54608351 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
54608378 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
54608405 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
54608432 CAAGGGTATTTAAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *** * *
54608459 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
54608486 CGAGGGTA
1 CAAGGGTA
54608494 AAATGGTAAT
Statistics
Matches: 118, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:54608359 original size:81 final size:80
Alignment explanation
Indices: 54608189--54608396 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 80
54608179 TTTTACCCCA
* * *
54608189 CAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTT
* * ***
54608254 TGGTAATTCTACCCT
66 CGGTAATTCAAAAAT
*
54608269 -ACAGAGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTAT
1 CA-AG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTAT
54608333 TTCGGTAATTTCAAAAAT
64 TTCGGTAA-TTCAAAAAT
* * **
54608351 CAAGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGTAATT
1 CAAGGGTATTTCGGTAATTCTACCCTA-CAGGGGTATTTTGGTAATT
54608397 TTATTGATCG
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
79 1 0.01
80 4 0.04
81 96 0.88
82 7 0.06
83 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (80 bp):
CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTT
CGGTAATTCAAAAAT
Found at i:54608452 original size:54 final size:54
Alignment explanation
Indices: 54608324--54608971 Score: 204
Period size: 54 Copynumber: 12.0 Consensus size: 54
54608314 TTCTACCCTA
** * * * **
54608324 CAAGGGTATTTCGGTAATTTCAAAAATCAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* ** **
54608378 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** *
54608432 CAAGGGTATTTAAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * * ***** * *
54608486 CGAGGGTA--AAATGGTAATTCTGTAAATCGAGGGTAAGACAGTAATTCTGTAAAT
1 CAAGGGTATTTAA--GTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * **** * * *
54608540 CGAGGGTA--AAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAAT
1 CAAGGGTATTTAA--GTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * ** ** ** *
54608594 CGAGGGTA--AAATGGTAATTCTAT-CTTAC-AGGAGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTAA--GTAATTTTATAAAT-CGAGG-GTATTTTGGTAATTTTGTAAAC
* ** * * ** *
54608648 CGAGGGTATTTCAA-TAATTTTGCAAA-CTGAGGGTATTTCGATAATTTTACAAAT
1 CAAGGGTATTT-AAGTAATTTTATAAATC-GAGGGTATTTTGGTAATTTTGTAAAC
* * ** * * ** **
54608702 CGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * * * ** *
54608756 CGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
** ** * * * * *
54608810 TGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAAT
1 CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
** * * * * * * ** *
54608864 CGGGGGTACTTT-GGTAATTTTACAAGTTGAGGGTGTTTTAGTAATTTTACAAAT
1 CAAGGGTA-TTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* * ** ** *
54608918 CGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTCAGTAATTTGGTAAAC
1 CAAGGGTATTTAAGTAATTTTATAAATC-GAGGGTATTTTGGTAATTTTGTAAAC
54608972 TAAAGGATTC
Statistics
Matches: 479, Mismatches: 100, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
52 2 0.00
53 8 0.02
54 460 0.96
55 7 0.01
57 2 0.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (54 bp):
CAAGGGTATTTAAGTAATTTTATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:54608466 original size:81 final size:81
Alignment explanation
Indices: 54608326--54608964 Score: 393
Period size: 81 Copynumber: 7.9 Consensus size: 81
54608316 CTACCCTACA
* * * ** *
54608326 AGGGTATTTCGGTAATTTCAAAAATCAAGGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTT
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATCGA-GGGTATTTT
**
54608390 GGTAATTTTATTGATCG
65 GGTAATTTTATAAATCG
* ** * * ** ***
54608407 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTAAGTAATTTTGTAAATCGAGGGTAAAATG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATCGAGGGTATTTTG
*
54608472 GTAATTTTGTAAATCG
66 GTAATTTTATAAATCG
** * ** ** * ** ***
54608488 AGGGTAAAAT-GGTAATTCTGTAAATCGAGGGTA-AGACAGTAATTCTGTAAATCGAGGGTAAAA
1 AGGGT-ATTTCGGTAATTTTACAAATCGAGGGTATTTA-AGTAATTTTACAAATCGAGGGTATTT
*
54608551 TGGTAATTCTATAAATCG
64 TGGTAATTTTATAAATCG
*** * * ** * * **
54608569 AGGGTAAAACGATAATTCTGTAAATCGAGGGTA--AAATGGTAATTCTATCTTA-C-AGGAGTAT
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAA--GTAATTTTA-CAAATCGAGG-GTAT
** *
54608630 TTCAGTAATTTTACAAATCG
62 TTTGGTAATTTTATAAATCG
** * * *
54608650 AGGGTATTTCAATAATTTTGCAAA-CTGAGGGTATTT-CGATAATTTTACAAATCGAGGATATTT
1 AGGGTATTTCGGTAATTTTACAAATC-GAGGGTATTTAAG-TAATTTTACAAATCGAGGGTATTT
*
54608713 GGGTAATTTTATAAATCG
64 TGGTAATTTTATAAATCG
* * * * *
54608731 GGGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTC
1 AGGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATCGAGGGTATTTT
* **
54608795 AGTAATTTTGCAAA-CTG
65 GGTAATTTTATAAATC-G
* ** * * *
54608812 AGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATCGAGGGTATTTTG
* * *
54608877 GTAATTTTACAAGTTG
66 GTAATTTTATAAATCG
* ** * * *
54608893 AGGGTGTTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCAAA-CTGAGGGTATTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATC-GAGGGTATTTT
*
54608957 AGTAATTT
65 GGTAATTT
54608965 GGTAAACTAA
Statistics
Matches: 444, Mismatches: 93, Indels: 42
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.00
80 17 0.04
81 413 0.93
82 13 0.03
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.37
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTAAGTAATTTTACAAATCGAGGGTATTTTG
GTAATTTTATAAATCG
Found at i:54608494 original size:27 final size:27
Alignment explanation
Indices: 54608445--54608614 Score: 268
Period size: 27 Copynumber: 6.3 Consensus size: 27
54608435 GGGTATTTAA
*
54608445 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
54608472 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* **
54608499 GTAATTCTGTAAATCGAGGGTAAGACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
54608526 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
54608553 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
54608580 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
54608607 GTAATTCT
1 GTAATTCT
54608615 ATCTTACAGG
Statistics
Matches: 130, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 130 1.00
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:54608656 original size:27 final size:27
Alignment explanation
Indices: 54608626--54608964 Score: 366
Period size: 27 Copynumber: 12.6 Consensus size: 27
54608616 TCTTACAGGA
54608626 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
54608653 GTATTTCAATAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
54608680 GTATTTC-GATAATTTTACAAATCGAGG
1 GTATTTCAG-TAATTTTACAAATCGAGG
* ** * *
54608707 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
54608734 GTACTTT-GGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
* *
54608761 GTATTTTAGTAATTTTACAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
54608788 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
54608815 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * *
54608842 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
54608869 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
* *
54608896 GTGTTTTAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
54608923 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
54608950 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
54608965 GGTAAACTAA
Statistics
Matches: 265, Mismatches: 36, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.03
27 248 0.94
28 9 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:54608680 original size:135 final size:133
Alignment explanation
Indices: 54608605--54608964 Score: 553
Period size: 135 Copynumber: 2.7 Consensus size: 133
54608595 GAGGGTAAAA
* * *
54608605 TGGTAATTCTATCTTACAGGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTCAATAATTTTG
1 TGGTAATTTTA-CTTACAGG-GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTG
*
54608670 CAAACTGAGGGTATTTCGATAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGG
64 CAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGG
54608735 TACTT
129 TACTT
* *
54608740 TGGTAATTTTAC-AAGTCGAGGGTATTTTAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTT
1 TGGTAATTTTACTTA--C-AGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT
54608804 GCAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGG
63 GCAAACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGG
54608869 GTACTT
128 GTACTT
* *
54608875 TGGTAATTTTACAAGTT-GAGGGTGTTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT
1 TGGTAATTTTAC---TTACAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTT
*
54608939 GCAAACTGAGGGTATTTCAGTAATTT
63 GCAAACTGAGGGTATTTCGGTAATTT
54608965 GGTAAACTAA
Statistics
Matches: 207, Mismatches: 11, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
133 1 0.00
134 1 0.00
135 202 0.98
136 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (133 bp):
TGGTAATTTTACTTACAGGGTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTGCA
AACTGAGGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTA
CTT
Found at i:54609846 original size:25 final size:24
Alignment explanation
Indices: 54609810--54609862 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
54609800 TGTTACAGCA
*
54609810 GCTCTTTATGAGCATCTTGATATAG
1 GCTCTTTATGAGCATCCTGATAT-G
* *
54609835 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATGAGCATCCTGATATG
54609859 GCTC
1 GCTC
54609863 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCTGATATG
Found at i:54610010 original size:25 final size:25
Alignment explanation
Indices: 54609976--54610028 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
54609966 TCTTGATTTA
* *
54609976 GCTCAGATAAGCTTCTTGTTACATG
1 GCTCACATAAGCATCTTGTTACATG
*
54610001 GCTCACATAAGCATCTTGTTATATG
1 GCTCACATAAGCATCTTGTTACATG
54610026 GCT
1 GCT
54610029 TGAGAGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (25 bp):
GCTCACATAAGCATCTTGTTACATG
Found at i:54613073 original size:52 final size:52
Alignment explanation
Indices: 54612995--54613098 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
54612985 ATGTAAGGAC
*
54612995 GTAACACCCAAGATACAGATTCAGTAGATCAGGTCAGGTCGAGGGCATTACA
1 GTAACACCCAAGATACAGATTAAGTAGATCAGGTCAGGTCGAGGGCATTACA
54613047 GTAACACCCAAGATACAGATTAAGTAGATCAGGTCAGGTCGAGGGCATTACA
1 GTAACACCCAAGATACAGATTAAGTAGATCAGGTCAGGTCGAGGGCATTACA
54613099 CATGAGGGTA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (52 bp):
GTAACACCCAAGATACAGATTAAGTAGATCAGGTCAGGTCGAGGGCATTACA
Found at i:54614543 original size:44 final size:43
Alignment explanation
Indices: 54614479--54614647 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
54614469 GTAGGATTCT
* *
54614479 GATATGTAATTTCGTGTAAGACCACGTCTGGGACGTTGGCATC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
* ** *
54614522 GATTTGTGATTTTCATGTAAGACCATATCTGGGACATTGGCATC
1 GATATGTGA-TTTCATGTAAGACCACGTCTGGGACGTTGGCATC
* * * * *
54614566 G-TATATAAGTTCGTGTAAGACC-CTGTCTAGGACAG-TGGCATC
1 GATATGTGATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
* * * *
54614608 GATATGTGATTACATGTCAGACCACGTCGGGGATGTTGGC
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGC
54614648 GTTGTACGAG
Statistics
Matches: 96, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
42 28 0.29
43 36 0.38
44 32 0.33
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:54619621 original size:13 final size:14
Alignment explanation
Indices: 54619589--54619623 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
54619579 ACACACTTGG
*
54619589 TCTACTAGAACATG
1 TCTACTAGAACATC
54619603 TCTACTAGAACA-C
1 TCTACTAGAACATC
54619616 TCTACTAG
1 TCTACTAG
54619624 CATGTTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (14 bp):
TCTACTAGAACATC
Found at i:54623215 original size:16 final size:16
Alignment explanation
Indices: 54623196--54623226 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
54623186 CTTCTTCACT
54623196 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
54623212 TACTTACTTACTTAA
1 TACTCACTTACTTAA
54623227 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:54623232 original size:20 final size:20
Alignment explanation
Indices: 54623193--54623232 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
54623183 AAACTTCTTC
* *
54623193 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
54623213 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
54623233 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:54625482 original size:46 final size:46
Alignment explanation
Indices: 54625420--54625537 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 46
54625410 GTAGCTGATA
* *
54625420 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGGCCGATG
* * *
54625466 CCATGT-CTAGACATGTCTTACACTGGCTTACATCTCAAGGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCGATG
54625512 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
54625538 TCCGTACATC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
45 6 0.10
46 51 0.82
47 5 0.08
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCGATG
Found at i:54625896 original size:30 final size:30
Alignment explanation
Indices: 54625860--54625942 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 30
54625850 TATACTTGGG
54625860 CAAAATGACCATTTTGCCCCTAGACTTTTA
1 CAAAATGACCATTTTGCCCCTAGACTTTTA
* *
54625890 CAAAATGACCATTTTGCCCCTAAACTTTTG
1 CAAAATGACCATTTTGCCCCTAGACTTTTA
* *
54625920 CAAAATGATCATTTTACCCCTAG
1 CAAAATGACCATTTTGCCCCTAG
54625943 GTCTAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.33
Consensus pattern (30 bp):
CAAAATGACCATTTTGCCCCTAGACTTTTA
Found at i:54627255 original size:11 final size:11
Alignment explanation
Indices: 54627239--54627263 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
54627229 ATATGATATT
54627239 TTATTATTTTA
1 TTATTATTTTA
54627250 TTATTATTTTA
1 TTATTATTTTA
54627261 TTA
1 TTA
54627264 GTATATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:54629651 original size:18 final size:18
Alignment explanation
Indices: 54629611--54629657 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
54629601 GCTAGCATAT
54629611 ATAAAT-CC-AATGAAAA
1 ATAAATACCAAATGAAAA
*
54629627 ATAAAATACCAAATTAAAA
1 AT-AAATACCAAATGAAAA
54629646 ATAAATATCCAA
1 ATAAATA-CCAA
54629658 GAGGCCTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 4 0.15
18 7 0.27
19 13 0.50
ACGTcount: A:0.64, C:0.13, G:0.02, T:0.21
Consensus pattern (18 bp):
ATAAATACCAAATGAAAA
Found at i:54633316 original size:16 final size:18
Alignment explanation
Indices: 54633297--54633329 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
54633287 CATATGAATT
54633297 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
54633313 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
54633330 GTAACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:54633937 original size:43 final size:43
Alignment explanation
Indices: 54633874--54633977 Score: 190
Period size: 43 Copynumber: 2.4 Consensus size: 43
54633864 TCGACATTTC
54633874 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATA
*
54633917 GCCTGCTAGGCTCGATGCCCGATATTATTTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATA
*
54633960 GCCTACTAGGCTCGAAGC
1 GCCTGCTAGGCTCGAAGC
54633978 TCGAATTCAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCCGATATTATTTCACCGGCATTATA
Found at i:54640470 original size:44 final size:44
Alignment explanation
Indices: 54640421--54640510 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
54640411 GCACACATTT
54640421 CAAGGTGTTAACACATTGAACATGGATAAATAGGTTTACAAACC
1 CAAGGTGTTAACACATTGAACATGGATAAATAGGTTTACAAACC
54640465 CAAGGTGTTAACACATTGAACATGGATAAATAGGTTTACAAACC
1 CAAGGTGTTAACACATTGAACATGGATAAATAGGTTTACAAACC
54640509 CA
1 CA
54640511 TAACAAATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.24
Consensus pattern (44 bp):
CAAGGTGTTAACACATTGAACATGGATAAATAGGTTTACAAACC
Found at i:54641963 original size:48 final size:47
Alignment explanation
Indices: 54641903--54642110 Score: 204
Period size: 48 Copynumber: 4.3 Consensus size: 47
54641893 ATGACAATAG
* * * *
54641903 CCCAGCTATGGTCTTACACGAAGTCTCATAACGGTGCTAATGCCATGT
1 CCCAGATATGGTCTTACACG-GGTCTCATAACGATGCTAATGCCATAT
* * * * *
54641951 CCCAGACATGGTCTTAAACGGGGCCTCATATCGATGCCAATGCCATAT
1 CCCAGATATGGTCTTACAC-GGGTCTCATAACGATGCTAATGCCATAT
* * *
54641999 CCCAGATATAGTCTTACATGGGATCTCAT-ACTGATGCTGATGCCATAT
1 CCCAGATATGGTCTTACACGGG-TCTCATAAC-GATGCTAATGCCATAT
* ** *
54642047 CCCAGATATGGTCTTACACGGGATAT-ATTCTCGATGCCAATGCCATAT
1 CCCAGATATGGTCTTACACGGG-TCTCA-TAACGATGCTAATGCCATAT
54642095 CCCAGATATGGTCTTA
1 CCCAGATATGGTCTTA
54642111 TACGAGATCT
Statistics
Matches: 132, Mismatches: 23, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
47 5 0.04
48 125 0.95
49 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (47 bp):
CCCAGATATGGTCTTACACGGGTCTCATAACGATGCTAATGCCATAT
Found at i:54642120 original size:96 final size:96
Alignment explanation
Indices: 54641903--54642127 Score: 267
Period size: 96 Copynumber: 2.3 Consensus size: 96
54641893 ATGACAATAG
* * *
54641903 CCCAGCTATGGTCTTACACGA-AGTCTCATAAC-GGTGCTAATGCCATGTCCCAGACATGGTCTT
1 CCCAGATATGGTCTTACACGAGA-TCTCAT-ACTGATGCTAATGCCATATCCCAGACATGGTCTT
* *
54641966 AAACGGGGCCTCATATCGATGCCAATGCCATAT
64 AAACGGGACATCATATCGATGCCAATGCCATAT
* * * * * *
54641999 CCCAGATATAGTCTTACATGGGATCTCATACTGATGCTGATGCCATATCCCAGATATGGTCTTAC
1 CCCAGATATGGTCTTACACGAGATCTCATACTGATGCTAATGCCATATCCCAGACATGGTCTTAA
* *
54642064 ACGGGATAT-ATTCTCGATGCCAATGCCATAT
66 ACGGGACATCA-TATCGATGCCAATGCCATAT
*
54642095 CCCAGATATGGTCTTATACGAGATCTCAATACT
1 CCCAGATATGGTCTTACACGAGATCTC-ATACT
54642128 CACATGTCAT
Statistics
Matches: 108, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
95 3 0.03
96 99 0.92
97 6 0.06
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (96 bp):
CCCAGATATGGTCTTACACGAGATCTCATACTGATGCTAATGCCATATCCCAGACATGGTCTTAA
ACGGGACATCATATCGATGCCAATGCCATAT
Found at i:54645444 original size:46 final size:47
Alignment explanation
Indices: 54645357--54645627 Score: 196
Period size: 47 Copynumber: 5.7 Consensus size: 47
54645347 TATTGTGAGT
* *
54645357 TAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAGTGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGAGATGAGTGC
* *
54645405 TAATGTAAGA-CATGTCTGGGACAT-GCATCGGCCACGAGATGTGT-C
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGAGATGAGTGC
* * *
54645450 -AGTGTAAGACCATGTCTGGGAAATGGCATCGGCACGGATATGTGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAGA--TGAGTGC
* * * * * ** *
54645499 TAGTGTAAAAACATGTCTGGGACATGGCGTCAGCCTCGATTTTGA-TAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGA-GATGAGT-GC
* * * * ** *
54645548 TAGTGTAAGGCCATATCTAGGACATGGCATC--AACTTGATGGATGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAGAT-GA-GTGC
*
54645595 TAGTGTAAGACCATGTCTGGGACATGGTATCGG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGG
54645628 TATTATACCC
Statistics
Matches: 171, Mismatches: 36, Indels: 31
0.72 0.15 0.13
Matches are distributed among these distances:
44 8 0.05
45 18 0.11
46 27 0.16
47 44 0.26
48 12 0.07
49 30 0.18
50 28 0.16
51 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAGATGAGTGC
Found at i:54647401 original size:13 final size:13
Alignment explanation
Indices: 54647383--54647413 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
54647373 AGACACGGCT
54647383 GTGTGTCTCAACC
1 GTGTGTCTCAACC
54647396 GTGTGTCTCAACC
1 GTGTGTCTCAACC
*
54647409 ATGTG
1 GTGTG
54647414 AGGGACACGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (13 bp):
GTGTGTCTCAACC
Found at i:54651939 original size:86 final size:87
Alignment explanation
Indices: 54651803--54652014 Score: 228
Period size: 86 Copynumber: 2.4 Consensus size: 87
54651793 CGCATTGCGA
* * * * * * * * *
54651803 TAAACCGCTGTATAGACAGGTTGCAGTTTAAACTACCAAATTAGATAATAGTACGCAACAAAGTT
1 TAAACTGCTGTACAGATAAGTTGTAG-TTAAACTGCCAGATCAGATAATAGTACGCAACAAAGAT
* * * * *
54651868 GACGTATATGTGGTACAATACGG
65 GACGTACAAGCGATACAATACAG
* *
54651891 TAAACTGCTGTACAGATAAGTTGTAG-TAAACTGCCAGATCAGATAATAGTATGCAGCAAAGATG
1 TAAACTGCTGTACAGATAAGTTGTAGTTAAACTGCCAGATCAGATAATAGTACGCAACAAAGATG
* * *
54651955 ACGTACAAGCGATATAGTGCAG
66 ACGTACAAGCGATACAATACAG
*
54651977 TAAACTGCTGTACCGATAAGTTGTAGTTAAACTGCCAG
1 TAAACTGCTGTACAGATAAGTTGTAGTTAAACTGCCAG
54652015 TTCAAAACAG
Statistics
Matches: 103, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
86 71 0.69
87 11 0.11
88 21 0.20
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (87 bp):
TAAACTGCTGTACAGATAAGTTGTAGTTAAACTGCCAGATCAGATAATAGTACGCAACAAAGATG
ACGTACAAGCGATACAATACAG
Found at i:54653316 original size:15 final size:15
Alignment explanation
Indices: 54653296--54653337 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
54653286 AAATCCAAAC
*
54653296 TAAATACATATTTAA
1 TAAATAAATATTTAA
54653311 TAAATAAATATTTAA
1 TAAATAAATATTTAA
*
54653326 CAAATAAATATT
1 TAAATAAATATT
54653338 AAACTTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAATAAATATTTAA
Found at i:54658517 original size:48 final size:47
Alignment explanation
Indices: 54658446--54658665 Score: 212
Period size: 48 Copynumber: 4.6 Consensus size: 47
54658436 TGAATTACCG
* *
54658446 ATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CAT-TCGAGGCCA
* ** * * *
54658494 ATGCCATGTCCCTGACATGGTCTTACACTACCTCGCATCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCGAGGCCA
* * * * *
54658542 ATGCCATGTTCCAAACATGGTCTTACACTGTCTCTCATTAC-ATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATT-CGA-GGCCA
* * *
54658590 ATGCCATGTCCTAGACATGGCCTTACACT-GCTCTCATATCGTGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCGAGGCCA
*
54658637 ATGCCATGACCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
54658666 AGCACACATA
Statistics
Matches: 140, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
47 39 0.28
48 101 0.72
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCGAGGCCA
Found at i:54658615 original size:96 final size:95
Alignment explanation
Indices: 54658446--54658665 Score: 252
Period size: 96 Copynumber: 2.3 Consensus size: 95
54658436 TGAATTACCG
54658446 ATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCCTGACA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCCTGACA
* *
54658511 TGGTCTTACACTACCTCGCATCTCAAT-GCCA
66 TGGCCTTACACT-CCTCGCATATC-ATGGCCA
* * *
54658542 ATGCCATGTTCCAAACATGGTCTTACACTGTCTCT-CAT-TAC-ATTGCCGATGCCATGT-CCTA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATGT-CGA-GGCCAATGCCATGTCCCT-
* * *
54658603 GACATGGCCTTACACTGCTCTCATATCGTGGCCA
62 GACATGGCCTTACACTCCTCGCATATCATGGCCA
** *
54658637 ATGCCATGACCCAGACATGGTCTTACACT
1 ATGCCATGTTCCAAACATGGTCTTACACT
54658666 AGCACACATA
Statistics
Matches: 108, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
94 1 0.01
95 43 0.40
96 63 0.58
97 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (95 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGCCAATGCCATGTCCCTGACA
TGGCCTTACACTCCTCGCATATCATGGCCA
Found at i:54665257 original size:37 final size:37
Alignment explanation
Indices: 54665162--54665305 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
54665152 GCTCAGACGA
* * * * *
54665162 AATCTCCACATGAAGTTATTGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
54665199 AATCTCCA-ACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
54665235 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
54665272 AATCTCCACACGTAGTCATCAGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
54665306 ATATATTACC
Statistics
Matches: 100, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
36 31 0.31
37 69 0.69
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:54665259 original size:73 final size:74
Alignment explanation
Indices: 54665162--54665305 Score: 227
Period size: 73 Copynumber: 2.0 Consensus size: 74
54665152 GCTCAGACGA
* * * *
54665162 AATCTCCACATGAAGTTATTGGGTCTTACCCGGACAAAATCTCCA-ACGTAGTCATCGGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTA
54665226 CCCGGACAT
66 CCCGGACAT
* *
54665235 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCAGGTCTTA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTA
54665300 CCCGGA
66 CCCGGA
54665306 ATATATTACC
Statistics
Matches: 64, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
73 40 0.62
74 24 0.38
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (74 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCAGGTCTTA
CCCGGACAT
Found at i:54665519 original size:46 final size:46
Alignment explanation
Indices: 54665451--54665580 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 46
54665441 TATATATACA
* * *
54665451 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
54665497 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* *
54665542 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTA
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA
54665581 TCTCATACAT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 3 0.04
44 2 0.03
45 4 0.06
46 40 0.58
47 20 0.29
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:54665577 original size:47 final size:47
Alignment explanation
Indices: 54665515--54665896 Score: 566
Period size: 47 Copynumber: 8.0 Consensus size: 47
54665505 ACACGTTTCG
* * * **
54665515 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
54665562 CATTGGCCATTCGGCCTTATCTCATACATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
54665609 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
54665656 CATTGGCCATTCGGCCTTATCACACATACGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
54665703 CATTGGCCATTCGGACTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
54665754 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
54665801 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
54665848 CATTGGTCATTCGGCCTTATCACACATACGCATGATCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
54665895 CA
1 CA
54665897 AAAAATCCTA
Statistics
Matches: 307, Mismatches: 24, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 265 0.86
51 42 0.14
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:54665755 original size:192 final size:188
Alignment explanation
Indices: 54665515--54665896 Score: 620
Period size: 192 Copynumber: 2.0 Consensus size: 188
54665505 ACACGTTTCG
* *
54665515 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGACTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTT
* * * *
54665580 ATCTCATACATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
66 ATCACACACACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
* *
54665645 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGCTCACATTCATCA
131 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGATCACATCCATCA
* *
54665703 CATTGGCCATTCGGACTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTAGCCATTCGGACTTA-C-CACATATAT-T-CAGGTTCACATTCATCACATTGGCCATTCGG
*
54665768 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
62 CCTTATCACACACACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
*
54665833 TGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACATACGCATGATCACATCCATCA
127 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGATCACATCCATCA
54665895 CA
1 CA
54665897 AAAAATCCTA
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
188 17 0.10
189 1 0.01
190 9 0.05
191 1 0.01
192 150 0.84
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (188 bp):
CATTAGCCATTCGGACTTACCACATATATTCAGGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACACACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGATCACATCCATCA
Done.