Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 177 of 318
Found at i:54962939 original size:20 final size:20
Alignment explanation
Indices: 54962914--54962972 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
54962904 TAAATATGGT
54962914 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
54962934 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
54962954 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
54962973 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:54963091 original size:23 final size:24
Alignment explanation
Indices: 54963023--54963188 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
54963013 GAGGAAGTGA
54963023 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54963047 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54963071 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54963094 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
54963117 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
54963141 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
54963165 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54963189 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:54963099 original size:47 final size:47
Alignment explanation
Indices: 54963023--54963188 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
54963013 GAGGAAGTGA
54963023 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
54963070 CAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
54963117 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
54963165 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54963189 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 13 0.12
47 62 0.56
48 24 0.22
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:54963415 original size:31 final size:31
Alignment explanation
Indices: 54963380--54963474 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
54963370 CGTTTACAGT
54963380 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
54963411 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
54963442 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
54963473 AA
1 AA
54963475 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:54966339 original size:27 final size:27
Alignment explanation
Indices: 54966280--54966458 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
54966270 TTTGGTTTAC
54966280 AAAATTACCAAAATA-CCCT-GCTTTGT
1 AAAATTACCAAAATACCCCTAG-TTTGT
* ** * *
54966306 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCCTAGTTTGT
54966333 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
54966360 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
54966387 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
*
54966414 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* **
54966441 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
54966459 TCGACCTGTA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 14 0.10
27 121 0.89
28 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:54966511 original size:27 final size:27
Alignment explanation
Indices: 54966280--54966530 Score: 215
Period size: 27 Copynumber: 9.3 Consensus size: 27
54966270 TTTGGTTTAC
*
54966280 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * * *
54966306 AAAATTACTAAAATACCATTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
54966333 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
54966360 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
54966387 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
54966414 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* ** **
54966441 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*** *
54966468 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * *
54966495 AAAATTACCAAAGTACCCTCAATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
54966522 AGAATTACC
1 AAAATTACC
54966531 GTTTTACCCC
Statistics
Matches: 191, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.09
27 172 0.90
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:54966538 original size:27 final size:27
Alignment explanation
Indices: 54966508--54966745 Score: 282
Period size: 27 Copynumber: 8.8 Consensus size: 27
54966498 ATTACCAAAG
* *
54966508 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
54966535 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
54966562 TACCC-CAGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
54966589 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
54966616 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
54966643 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
54966670 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
54966697 TGCCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
54966724 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
54966746 TAAAATACCC
Statistics
Matches: 190, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 188 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:54966566 original size:81 final size:81
Alignment explanation
Indices: 54966481--54966756 Score: 277
Period size: 81 Copynumber: 3.4 Consensus size: 81
54966471 ATTATTGAAA
* * * * * *
54966481 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTTTACCCCTAATT
1 TACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCCTGATT
*
54966546 TACATAATTACCATTT
66 TACAAAATTACCATTT
* * * ***
54966562 TACCC-CAGATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTA-CCCTCGA
1 TACCCTC-GATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCCT-GA
*
54966625 TTTACAGAATTACCATTT
64 TTTACAAAATTACCATTT
* * ** * * * *
54966643 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTACTGTTTTGCCCTTGATT
1 TACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCCTGATT
**
54966708 TACAAAATTACTGTTT
66 TACAAAATTACCATTT
* * *
54966724 TACCCTCGATTTACAAAATTACTAAAATACCCT
1 TACCCTCGATTTATAAAATTACCAAATTACCCT
54966757 TGGTTTGTGA
Statistics
Matches: 161, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
80 5 0.03
81 152 0.94
82 4 0.02
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCAAATTACCCTCGATTTACAGAATTACCGTTTTACCCCTGATT
TACAAAATTACCATTT
Found at i:54966754 original size:27 final size:27
Alignment explanation
Indices: 54966724--54966809 Score: 73
Period size: 27 Copynumber: 3.2 Consensus size: 27
54966714 ATTACTGTTT
* *
54966724 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * * **
54966751 TACCCTTGGTTTGTGAAATTACCGCAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
54966778 TACCCTCAATTTGTAAAACTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
54966805 TACCC
1 TACCC
54966810 CTGTATGGTA
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.37, C:0.26, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:54968012 original size:25 final size:25
Alignment explanation
Indices: 54967983--54968030 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
54967973 TTATAATATG
* * *
54967983 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
54968008 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
54968031 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:54968099 original size:20 final size:20
Alignment explanation
Indices: 54968074--54968132 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
54968064 TAAATATGGT
54968074 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
54968094 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
54968114 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
54968133 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:54968251 original size:23 final size:24
Alignment explanation
Indices: 54968183--54968348 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
54968173 GAGGAAGTGA
54968183 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54968207 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54968231 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
54968254 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
54968277 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
54968301 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
54968325 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54968349 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
23 46 0.35
24 76 0.57
25 11 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:54968259 original size:47 final size:47
Alignment explanation
Indices: 54968183--54968348 Score: 246
Period size: 47 Copynumber: 3.5 Consensus size: 47
54968173 GAGGAAGTGA
54968183 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
54968230 CAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
** *
54968277 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
*
54968325 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
54968349 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 4, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
46 13 0.12
47 62 0.56
48 24 0.22
49 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
Found at i:54968575 original size:31 final size:31
Alignment explanation
Indices: 54968540--54968634 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
54968530 CGTTTACAGT
54968540 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
54968571 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
54968602 AAAGGATTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
54968633 AA
1 AA
54968635 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:54972842 original size:80 final size:80
Alignment explanation
Indices: 54972723--54972914 Score: 287
Period size: 80 Copynumber: 2.4 Consensus size: 80
54972713 GGATATAGCT
* * * * *
54972723 ACTCGCTCGAATGCCTTCGGGACATAGCCCCGATGTAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
54972788 AGCCCGGAAA-TAGTA
66 AGCCC-GAAACTAGTA
*
54972803 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
54972868 AGCCCGAAACTAGTC
66 AGCCCGAAACTAGTA
* *
54972883 ACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
54972915 TTATCATCCG
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 4 0.04
80 97 0.96
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGAAACTAGTA
Found at i:54972909 original size:120 final size:119
Alignment explanation
Indices: 54972697--54972914 Score: 305
Period size: 120 Copynumber: 1.8 Consensus size: 119
54972687 AAGCCAGGTA
* * * * **
54972697 CCTTCGGGATTTAACTGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCCGATGTAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCCGAACTAGT
*
54972762 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
54972816 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAG-CCCGAAACT
1 CCTTCGGGACTTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCCG-AACT
* *
54972879 AGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
54972915 TTATCATCCG
Statistics
Matches: 86, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
119 18 0.21
120 68 0.79
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (119 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCCGAACTAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:54972913 original size:40 final size:39
Alignment explanation
Indices: 54972723--54972913 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 39
54972713 GGATATAGCT
* * * **
54972723 ACTCGCTCGAATGCCTTCGGGACATAGCCCCGATGTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCCGAAATAGTA
54972763 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATAGTA
* *
54972803 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATAGTA
*
54972843 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAA-TAGTA
* *
54972883 ACTAGCGCAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
54972914 GTTATCATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 6 0.04
40 131 0.96
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATAGTA
Found at i:54977049 original size:12 final size:14
Alignment explanation
Indices: 54977027--54977067 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
54977017 GTTTCCTTCC
54977027 AATTCAAAAATC-A
1 AATTCAAAAATCTA
54977040 AATT-AAAAATCTA
1 AATTCAAAAATCTA
* *
54977053 AATCCTAAAATCTA
1 AATTCAAAAATCTA
54977067 A
1 A
54977068 CTAACAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 7 0.29
13 8 0.33
14 9 0.38
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.27
Consensus pattern (14 bp):
AATTCAAAAATCTA
Found at i:54979279 original size:23 final size:23
Alignment explanation
Indices: 54979215--54979359 Score: 87
Period size: 23 Copynumber: 6.3 Consensus size: 23
54979205 GTATGATTTA
*
54979215 CGAACCCCTACTTTACAAACATG
1 CGAACCCCTACTTTATAAACATG
* * **
54979238 TGAACCCTTGTTTTATAAACATG
1 CGAACCCCTACTTTATAAACATG
* * * *
54979261 CGAACCCTTACTTTGTAAAAAAAG
1 CGAACCCCTACTTTAT-AAACATG
* *
54979285 -GAACACCTACTTTATAAATATG
1 CGAACCCCTACTTTATAAACATG
* * * **
54979307 CGAGCCCCTA-TTATGTAAATACA
1 CGAACCCCTACTT-TATAAACATG
* *
54979330 CGAACCCCTATTTTGTAAACATG
1 CGAACCCCTACTTTATAAACATG
*
54979353 TGAACCC
1 CGAACCC
54979360 TTGTTTTTTT
Statistics
Matches: 92, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
22 7 0.08
23 78 0.85
24 7 0.08
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.28
Consensus pattern (23 bp):
CGAACCCCTACTTTATAAACATG
Found at i:54979299 original size:46 final size:46
Alignment explanation
Indices: 54979249--54979361 Score: 120
Period size: 46 Copynumber: 2.5 Consensus size: 46
54979239 GAACCCTTGT
*
54979249 TTTATAAACATGCGAACCCTTACTT-TGTAAAAAAAGGAACACCTAC
1 TTTATAAACATGCGAACCCTTA-TTATGTAAAAAAACGAACACCTAC
* * * * * * *
54979295 TTTATAAATATGCGAGCCCCTATTATGTAAATACACGAACCCCTAT
1 TTTATAAACATGCGAACCCTTATTATGTAAAAAAACGAACACCTAC
* *
54979341 TTTGTAAACATGTGAACCCTT
1 TTTATAAACATGCGAACCCTT
54979362 GTTTTTTTAA
Statistics
Matches: 53, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 2 0.04
46 51 0.96
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (46 bp):
TTTATAAACATGCGAACCCTTATTATGTAAAAAAACGAACACCTAC
Found at i:54979366 original size:23 final size:23
Alignment explanation
Indices: 54979231--54979383 Score: 76
Period size: 23 Copynumber: 6.7 Consensus size: 23
54979221 CCTACTTTAC
* *
54979231 AAACATGTGAACCCTTGTTTTAT
1 AAACATGTGAACCCTTATTTTGT
* *
54979254 AAACATGCGAACCCTTACTTTGT
1 AAACATGTGAACCCTTATTTTGT
* * * *
54979277 AAAAAAAG-GAACACC-TACTTTAT
1 -AAACATGTGAAC-CCTTATTTTGT
* * * * *
54979300 AAATATGCGAGCCCCTATTATGT
1 AAACATGTGAACCCTTATTTTGT
* *** *
54979323 AAATACACGAACCCCTATTTTGT
1 AAACATGTGAACCCTTATTTTGT
* *
54979346 AAACATGTGAACCCTTGTTTTTT
1 AAACATGTGAACCCTTATTTTGT
* *
54979369 TAATATGTGAACCCT
1 AAACATGTGAACCCT
54979384 ATCACATAAT
Statistics
Matches: 100, Mismatches: 26, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
22 7 0.07
23 86 0.86
24 7 0.07
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (23 bp):
AAACATGTGAACCCTTATTTTGT
Found at i:54979532 original size:37 final size:38
Alignment explanation
Indices: 54979489--54979580 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 38
54979479 GCCTACCTAA
*
54979489 GTGCGAACCCCTACCTATATGTGAACCCTA-ATTTGAG
1 GTGCGAACCCCTACCTATATGTGAACCCTATATGTGAG
* * * *
54979526 GTGCGAACCCCTACCTATTTTTGAGCCCTATATGTGAT
1 GTGCGAACCCCTACCTATATGTGAACCCTATATGTGAG
*
54979564 GTGCG-AGCCCTACCTAT
1 GTGCGAACCCCTACCTAT
54979581 GTGCAAACCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
37 38 0.79
38 10 0.21
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (38 bp):
GTGCGAACCCCTACCTATATGTGAACCCTATATGTGAG
Found at i:54979753 original size:22 final size:22
Alignment explanation
Indices: 54979704--54979753 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
54979694 AACTTGTTAA
*
54979704 GAATGATATGCGAACCTATGAT
1 GAATGATATGCAAACCTATGAT
*
54979726 -ATATGATATGCAAACCTATGTT
1 GA-ATGATATGCAAACCTATGAT
54979748 GAATGA
1 GAATGA
54979754 GGTACGAATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 1 0.04
22 22 0.92
23 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (22 bp):
GAATGATATGCAAACCTATGAT
Found at i:54980442 original size:18 final size:18
Alignment explanation
Indices: 54980408--54980455 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
54980398 TTAATATATA
*
54980408 TGAACTG-TTATTTTATG
1 TGAACTGTTTATTCTATG
*
54980425 TGAGCTGTTTATTCTATG
1 TGAACTGTTTATTCTATG
54980443 TGAACTGTTTATT
1 TGAACTGTTTATT
54980456 TCGTGTGAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 6 0.22
18 21 0.78
ACGTcount: A:0.21, C:0.08, G:0.19, T:0.52
Consensus pattern (18 bp):
TGAACTGTTTATTCTATG
Found at i:54980462 original size:18 final size:18
Alignment explanation
Indices: 54980408--54980466 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
54980398 TTAATATATA
*
54980408 TGAACTG-TTATTTTATG
1 TGAACTGTTTATTTCATG
*
54980425 TGAGCTGTTTA-TTCTATG
1 TGAACTGTTTATTTC-ATG
*
54980443 TGAACTGTTTATTTCGTG
1 TGAACTGTTTATTTCATG
54980461 TGAACT
1 TGAACT
54980467 ATTATTTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 8 0.23
18 24 0.69
19 3 0.09
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.49
Consensus pattern (18 bp):
TGAACTGTTTATTTCATG
Found at i:54980472 original size:35 final size:34
Alignment explanation
Indices: 54980372--54980472 Score: 85
Period size: 34 Copynumber: 2.9 Consensus size: 34
54980362 TACGGTGTGG
* * * * *
54980372 TATGATCTATTATTTCTTATGAACTATTAATATA
1 TATGAACTGTTATTTCATGTGAACTATTATTATA
* * * *
54980406 TATGAACTGTTATTTTATGTGAGCTGTTTATTCTA
1 TATGAACTGTTATTTCATGTGAACT-ATTATTATA
* *
54980441 TGTGAACTGTTTATTTCGTGTGAACTATTATT
1 TATGAACTG-TTATTTCATGTGAACTATTATT
54980473 TTGTGCAAGC
Statistics
Matches: 51, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
34 19 0.37
35 19 0.37
36 13 0.25
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (34 bp):
TATGAACTGTTATTTCATGTGAACTATTATTATA
Found at i:54984099 original size:42 final size:41
Alignment explanation
Indices: 54984006--54984157 Score: 144
Period size: 43 Copynumber: 3.6 Consensus size: 41
54983996 GTCTCAGATG
* * * *
54984006 TGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACA
1 TGGTCTTACACGAAATCAAATAT-GATG-CAATGTCCCAGACA
* *
54984049 GGGTCTTACACGAAATCAAATATGATGTCGATGTCCCAGACA
1 TGGTCTTACACGAAATCAAATATGATG-CAATGTCCCAGACA
* **
54984091 TGGTCTTACACGTAAATTTCAAAT-CGATGCAAATGTCCCAGATG
1 TGGTCTTACACG-AAA--TCAAATATGATGC-AATGTCCCAGACA
*
54984135 TGGTCTTACACGAAATCACATAT
1 TGGTCTTACACGAAATCAAATAT
54984158 CAGAAATCCT
Statistics
Matches: 90, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
41 5 0.06
42 26 0.29
43 27 0.30
44 26 0.29
45 6 0.07
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (41 bp):
TGGTCTTACACGAAATCAAATATGATGCAATGTCCCAGACA
Found at i:54987431 original size:2 final size:2
Alignment explanation
Indices: 54987424--54987457 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
54987414 ACCAGAACAG
54987424 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
54987458 GTGGCGAAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:54988250 original size:27 final size:27
Alignment explanation
Indices: 54988193--54988306 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 27
54988183 CAAAATGGTA
*
54988193 ATTT-TACCCTA-AAGGGTATCTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
54988218 AATTCTACCCTACAAGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
54988245 ATTTCTACCATACAAGGGTAGTTCGGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
* *
54988272 ATTTCTATCCTACAAGGGTATTTCAGT
1 ATTTCTACCCTACAAGGGTATTTCGGT
*
54988299 AATTCTAC
1 ATTTCTAC
54988307 AACTTATCCA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
25 3 0.04
26 7 0.09
27 64 0.86
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
ATTTCTACCCTACAAGGGTATTTCGGT
Found at i:54990490 original size:39 final size:40
Alignment explanation
Indices: 54990318--54990494 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
54990308 CCAAGGCCAA
* * * * * *
54990318 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * *
54990357 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCAC-AATTGCCTT
*
54990397 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
* * * * *
54990437 CGGGTCTTAACCCGGATATAATTTC-AGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
*
54990476 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
54990495 CATTCAATTT
Statistics
Matches: 118, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.33
40 77 0.65
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACTACTAGCACAATTGCCTT
Found at i:54998409 original size:40 final size:40
Alignment explanation
Indices: 54998350--54998518 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
54998340 CGGGACTTTA
* * *
54998350 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
54998390 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
54998430 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
54998470 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
54998510 CCCGGATAT
1 CCCGGATAT
54998519 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:55001905 original size:78 final size:80
Alignment explanation
Indices: 55001763--55001986 Score: 253
Period size: 78 Copynumber: 2.8 Consensus size: 80
55001753 TCGAATGATG
* * * * * *
55001763 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
55001826 TTGTGCA-AGTTACTAAT
64 TTGTG-AGAGTTACTAAA
* *
55001843 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCTGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
55001905 TTTGAGAGTTACTAAA
65 TGTGAGAGTTACTAAA
* * *
55001921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
55001986 G
66 G
55001987 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
77 3 0.02
78 46 0.38
79 24 0.20
80 46 0.38
81 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGAGAGTTACTAAA
Found at i:55001954 original size:40 final size:40
Alignment explanation
Indices: 55001763--55001986 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
55001753 TCGAATGATG
* * * * *
55001763 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
55001803 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
55001843 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
55001881 TCTGGGTTAAGTCCCGAAGGCATTTTTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
55001921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
55001962 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55001987 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 24 0.15
39 19 0.12
40 106 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:55001999 original size:40 final size:40
Alignment explanation
Indices: 55001844--55002005 Score: 126
Period size: 40 Copynumber: 4.1 Consensus size: 40
55001834 GTTACTAATT
55001844 CCGGGCTAAG-CCCGAAGGCATTGTG--CGAGTTA-CTA-AA
1 CCGGGCTAAGTCCCGAAGGCATT-TGAACGAG-TAGCTATAA
* *
55001881 TCTGGGTTAAGTCCCGAAGGCATTTTTG-A-GAGTTA-CTA-AA
1 -CCGGGCTAAGTCCCGAAGGCA--TTTGAACGAG-TAGCTATAA
* ** *
55001921 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
* *
55001962 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
55002002 CCGG
1 CCGG
55002006 TTAAATTCCG
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
38 12 0.11
39 11 0.10
40 78 0.74
41 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTATAA
Found at i:55008038 original size:79 final size:82
Alignment explanation
Indices: 55007898--55008082 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
55007888 TTGAATGATG
* * *
55007898 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
55007962 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
55007978 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
55008040 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
55008058 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
55008083 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:55008090 original size:40 final size:40
Alignment explanation
Indices: 55007899--55008090 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
55007889 TGAATGATGT
* * * * *
55007899 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
55007939 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
55007979 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
55008018 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
55008058 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
55008091 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:55008113 original size:79 final size:79
Alignment explanation
Indices: 55007898--55008115 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
55007888 TTGAATGATG
* * * * ** *
55007898 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
55007961 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
55007978 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
55008043 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
55008058 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
55008116 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:55013613 original size:40 final size:40
Alignment explanation
Indices: 55013558--55013660 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
55013548 AATGATGTCT
55013558 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AATCC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA-CC
* *
55013598 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACC
1 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACC
* *
55013638 GGGCTATGTCCCGAAGGCATTTG
1 GGGTTAAGTCCCGAAGGCATTTG
55013661 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAACC
Found at i:55013667 original size:40 final size:40
Alignment explanation
Indices: 55013562--55013679 Score: 148
Period size: 40 Copynumber: 3.0 Consensus size: 40
55013552 ATGTCTGGGT
* * *
55013562 TAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAA-CCGGGC
55013602 TAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACCGGGC
* ** * *
55013642 TATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACCGG
55013680 TTAAATTCCG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 67 0.97
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAACCGGGC
Found at i:55016390 original size:16 final size:18
Alignment explanation
Indices: 55016352--55016384 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
55016342 AACTAAAATC
55016352 TCAATGGTATCACATGAA
1 TCAATGGTATCACATGAA
55016370 TCAAT-GTAT-ACATGA
1 TCAATGGTATCACATGA
55016385 TCCAATTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (18 bp):
TCAATGGTATCACATGAA
Found at i:55018411 original size:40 final size:40
Alignment explanation
Indices: 55018356--55018556 Score: 289
Period size: 40 Copynumber: 5.0 Consensus size: 40
55018346 TGAATGATAC
* *
55018356 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
55018396 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
* *
55018436 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
*
55018476 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
55018516 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
55018556 C
1 C
55018557 TGGCTAAATT
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 145 0.98
41 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:55021174 original size:63 final size:63
Alignment explanation
Indices: 55021075--55021200 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
55021065 CCATTGATGC
*
55021075 ATATACATGAGTTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAGACAACTTT
1 ATATACATGAGTTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTT
*
55021138 ATATACATGATTTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTT
1 ATATACATGAGTTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTT
55021201 TGTAAAGAGA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (63 bp):
ATATACATGAGTTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTT
Found at i:55021213 original size:63 final size:63
Alignment explanation
Indices: 55021086--55021217 Score: 212
Period size: 63 Copynumber: 2.1 Consensus size: 63
55021076 TATACATGAG
* * *
55021086 TTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAGACAACTTTATATACATGAT
1 TTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTTATATAAAAGAT
*
55021149 TTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTT-TGTAAAGAGAT
1 TTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTTATATAAA-AGAT
55021212 TTTTGA
1 TTTTGA
55021218 TGAAATTATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
62 4 0.06
63 60 0.94
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.43
Consensus pattern (63 bp):
TTTTGAAGTTTTATGATATAAAATGAATGGTTGTTGTTAGATAAACAACTTTATATAAAAGAT
Found at i:55021834 original size:25 final size:25
Alignment explanation
Indices: 55021780--55021835 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
55021770 GCACTCCATC
* *
55021780 GCTCGTGAGAGCATATCAATTTATA
1 GCTCGTGAGAGCATATCAATTCACA
* *
55021805 ACTCGTGAGAGCATA-CTGATTCACA
1 GCTCGTGAGAGCATATC-AATTCACA
55021830 GCTCGT
1 GCTCGT
55021836 ATTATAACAG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 1 0.04
25 24 0.96
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
GCTCGTGAGAGCATATCAATTCACA
Found at i:55026293 original size:29 final size:29
Alignment explanation
Indices: 55026215--55026294 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 29
55026205 TGCCCCATCT
* *
55026215 TATTCATATGGCCCATCAGGCCCAATTCA
1 TATTCATATGGCCTATCAGGCCCAACTCA
* *
55026244 CATTCATATAGCCTATCAGGCCCAACTCA
1 TATTCATATGGCCTATCAGGCCCAACTCA
* *
55026273 TATTCATATGGCATATTAGGCC
1 TATTCATATGGCCTATCAGGCC
55026295 GAAATCACCT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (29 bp):
TATTCATATGGCCTATCAGGCCCAACTCA
Found at i:55026582 original size:16 final size:16
Alignment explanation
Indices: 55026548--55026582 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
55026538 GTAGCCAAAC
*
55026548 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
*
55026564 TTTCAGCTTTTCGGTA
1 TTTCAGCTTTTCGGCA
55026580 TTT
1 TTT
55026583 TGGCATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.54
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:55030484 original size:27 final size:27
Alignment explanation
Indices: 55030436--55030488 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
55030426 ACATTCAACA
** *
55030436 CTTAGGGGTATTTTGGTCATTTTCTCC
1 CTTAGGGGTATTTCAGTAATTTTCTCC
55030463 CTTAGGGGTATTTCAGTAATTTTCTC
1 CTTAGGGGTATTTCAGTAATTTTCTC
55030489 TTAATTGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.15, C:0.17, G:0.21, T:0.47
Consensus pattern (27 bp):
CTTAGGGGTATTTCAGTAATTTTCTCC
Found at i:55030812 original size:29 final size:29
Alignment explanation
Indices: 55030773--55030843 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
55030763 TAGCCTATCT
*
55030773 CATTCATATGGCCCATCAAGTCCAA-TTCA
1 CATTCATATGGCCCATCAAGCCCAACTT-A
*
55030802 CATTCATATGGCCCATCAGGCCCAACTTA
1 CATTCATATGGCCCATCAAGCCCAACTTA
*
55030831 TATTCATATGGCC
1 CATTCATATGGCC
55030844 TATTAGGCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 36 0.95
30 2 0.05
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATCAAGCCCAACTTA
Found at i:55033827 original size:17 final size:16
Alignment explanation
Indices: 55033800--55033831 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
55033790 TGGTTGGAGT
55033800 AAACTGAAACTGTAGG
1 AAACTGAAACTGTAGG
55033816 AAACTAGAAACTGTAG
1 AAACT-GAAACTGTAG
55033832 TGAGACCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.47, C:0.12, G:0.22, T:0.19
Consensus pattern (16 bp):
AAACTGAAACTGTAGG
Found at i:55040557 original size:24 final size:25
Alignment explanation
Indices: 55040520--55040567 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 25
55040510 TTGCCACATA
*
55040520 TACTGATACTGGCAGCTTTGCTGCT
1 TACTGATACTGGCAGCCTTGCTGCT
55040545 TACTG-TACTGGCAGCCTTGCTGC
1 TACTGATACTGGCAGCCTTGCTGC
55040568 GATATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.15, C:0.27, G:0.25, T:0.33
Consensus pattern (25 bp):
TACTGATACTGGCAGCCTTGCTGCT
Found at i:55046949 original size:2 final size:2
Alignment explanation
Indices: 55046942--55046986 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
55046932 GATATCTGGC
* * * *
55046942 TA TA TA TA TA TA TA AA TA TA TT TA TA TA TA CA TA TA TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55046984 TA T
1 TA T
55046987 TTGTTAAGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:55052814 original size:38 final size:39
Alignment explanation
Indices: 55052685--55052846 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
55052675 TATGGTAACC
* *
55052685 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
55052725 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55052764 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT-ACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55052802 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
55052841 CGCACA
1 CGCACA
55052847 TTCATTCACA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:55052824 original size:77 final size:79
Alignment explanation
Indices: 55052685--55052835 Score: 261
Period size: 77 Copynumber: 1.9 Consensus size: 79
55052675 TATGGTAACC
55052685 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
55052750 CGGATATCATAGCT
66 CGGATATCATAGCT
* * *
55052764 CGCACAATTGCCTTCGGG-CTTAGCCCGGATAT-ACAATTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
55052827 CGGATATCA
66 CGGATATCA
55052836 CAATTCGCAC
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 39 0.57
78 13 0.19
79 17 0.25
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:55060631 original size:40 final size:39
Alignment explanation
Indices: 55060587--55060779 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
55060577 GTTCAAAACA
* * ** * *
55060587 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
55060627 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
55060667 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
55060706 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
55060745 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
55060780 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:55060698 original size:39 final size:39
Alignment explanation
Indices: 55060617--55060779 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
55060607 TATGGTAACC
* *
55060617 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
55060657 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55060696 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
55060735 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
55060774 CGCACA
1 CGCACA
55060780 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:55066342 original size:44 final size:42
Alignment explanation
Indices: 55066194--55066349 Score: 183
Period size: 43 Copynumber: 3.6 Consensus size: 42
55066184 TCGTACAACA
* * *
55066194 CCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATTGATG
1 CCAACGTCCCAGACATGGTCTTACACGTAAATC-AA-ATCGATG
*
55066237 CC-ACTATCCCAGACATGGTCTTACACG-AAATCAAATACGATG
1 CCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAT-CGATG
*
55066279 CCAATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCGATG
1 CCAACGTCCCAGACATGGTCTTACACGTAAATCA-AA-TCGATG
*
55066323 CCAACGTCCCAGACGTGGTCTTACACG
1 CCAACGTCCCAGACATGGTCTTACACG
55066350 ATAACACAGA
Statistics
Matches: 98, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 2 0.02
42 31 0.32
43 32 0.33
44 32 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
CCAACGTCCCAGACATGGTCTTACACGTAAATCAAATCGATG
Found at i:55066343 original size:86 final size:85
Alignment explanation
Indices: 55066194--55066350 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
55066184 TCGTACAACA
* * *
55066194 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCACTATCCCAGACATGGTCTT
1 CCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAGACATGGTCTT
55066259 ACACGAAATCAAATACGATG
66 ACACGAAATCAAATACGATG
* * * *
55066279 CCAATGTCCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGACGTGGT
1 CCAACGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCC-ACTATCCCAGACATGGT
55066342 CTTACACGA
63 CTTACACGA
55066351 TAACACAGAT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 25 0.40
86 33 0.53
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (85 bp):
CCAACGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCACTATCCCAGACATGGTCTT
ACACGAAATCAAATACGATG
Found at i:55071863 original size:53 final size:53
Alignment explanation
Indices: 55071793--55072002 Score: 179
Period size: 53 Copynumber: 3.9 Consensus size: 53
55071783 TTTTCCTTTT
* * * *
55071793 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTA
* * * *** * *
55071846 TGAACTCACCATTGCCATGCCTTGGTGTGGTCTTACATGGGATCTTTACCTTA
1 TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTA
** * * * * *
55071899 TCATAGTTTATCAATGCCATGTCC-TGACAGGGTCTTACATGATTTCCTTACCTTG
1 T-A-AACTTACCAATGCCATG-CCTTGACATGGTCTTACATGGTATCCTTACCTTA
* * *
55071954 TAAAACTTACCAATGCCATGCCTTGGCTTGGTCTTACTTGGTATCCTTA
1 T-AAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
55072003 AACCCTAATG
Statistics
Matches: 118, Mismatches: 35, Indels: 7
0.74 0.22 0.04
Matches are distributed among these distances:
53 46 0.39
54 34 0.29
55 36 0.31
56 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
TAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTA
Found at i:55075303 original size:40 final size:40
Alignment explanation
Indices: 55075258--55075424 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
55075248 CGGAATATAA
55075258 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
55075298 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
55075338 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
55075378 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
55075417 CCGGATAT
1 CCGGATAT
55075425 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:55083326 original size:40 final size:40
Alignment explanation
Indices: 55083281--55083447 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
55083271 CGGAATATAA
55083281 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
55083321 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
55083361 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
55083401 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
55083440 CCGGATAT
1 CCGGATAT
55083448 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:55092122 original size:47 final size:47
Alignment explanation
Indices: 55092049--55092179 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 47
55092039 AACAATCGAT
* ** * *
55092049 AAGTACCTATACTATGGCTTGGAGCCAAATCAAGGTAACT-TAACCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCT-ACCCA
* * * *
55092096 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGTTAACTCTTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTACCCA
* *
55092143 AAATACCTATATCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
55092180 TTATTCGCAC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
47 69 0.99
48 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCTACCCA
Found at i:55092766 original size:29 final size:28
Alignment explanation
Indices: 55092720--55092779 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
55092710 CATTCATTTA
* *
55092720 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCACAATTGAACCCCT-AATTGACACT
* * *
55092749 TTTCCCAATTGAATCCCTAATTGACATT
1 TTTCACAATTGAACCCCTAATTGACACT
55092777 TTT
1 TTT
55092780 GTCAAAAATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.28, C:0.27, G:0.03, T:0.42
Consensus pattern (28 bp):
TTTCACAATTGAACCCCTAATTGACACT
Found at i:55099639 original size:47 final size:47
Alignment explanation
Indices: 55099567--55099697 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 47
55099557 CACAATCGAT
* **
55099567 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCTTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* ** * *
55099614 GAGTACCTATACCATGGCCTATAGCCAAATCAAGATAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
* *
55099661 AAATACCTATATCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
55099698 TTATTCACAC
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
Found at i:55107145 original size:24 final size:24
Alignment explanation
Indices: 55107074--55107147 Score: 78
Period size: 24 Copynumber: 3.0 Consensus size: 24
55107064 TCCGAGTTAT
* *
55107074 GAACAGTAAGCTCCTCCTGAGCTGA
1 GAACAGTAAGCTCTTAC-GAGCTGA
* *
55107099 TAGACAGTAAGCT-TTGACAAGCTGA
1 GA-ACAGTAAGCTCTT-ACGAGCTGA
55107124 GAACAGTAAGCTCTTACGAGCTGA
1 GAACAGTAAGCTCTTACGAGCTGA
55107148 TATATCAGTA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
24 18 0.45
25 11 0.28
26 11 0.28
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (24 bp):
GAACAGTAAGCTCTTACGAGCTGA
Found at i:55109231 original size:12 final size:12
Alignment explanation
Indices: 55109214--55109238 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
55109204 CTAGTATGAG
55109214 TATAAGGAATAT
1 TATAAGGAATAT
55109226 TATAAGGAATAT
1 TATAAGGAATAT
55109238 T
1 T
55109239 CGGCCTAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (12 bp):
TATAAGGAATAT
Found at i:55122665 original size:27 final size:26
Alignment explanation
Indices: 55122591--55122691 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
55122581 CCCTTCTCAG
55122591 TAAACTGGGGCA-AAGCCCTTTTTAA
1 TAAACTGGGGCATAAGCCCTTTTTAA
55122616 TAAACTGGGGCATAAGCCCTTTTTAA
1 TAAACTGGGGCATAAGCCCTTTTTAA
55122642 TAAACTGGGGCATAAGCCCTTTTTCAA
1 TAAACTGGGGCATAAGCCCTTTTT-AA
*
55122669 TAAACTAGGGCATAAGCCCTTTT
1 TAAACTGGGGCATAAGCCCTTTT
55122692 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
25 12 0.16
26 37 0.51
27 24 0.33
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
TAAACTGGGGCATAAGCCCTTTTTAA
Found at i:55122687 original size:53 final size:51
Alignment explanation
Indices: 55122591--55122691 Score: 175
Period size: 53 Copynumber: 1.9 Consensus size: 51
55122581 CCCTTCTCAG
*
55122591 TAAACTGGGGCAAAGCCCTTTTTAATAAACTGGGGCATAAGCCCTTTTTAA
1 TAAACTGGGGCAAAGCCCTTTTTAATAAACTAGGGCATAAGCCCTTTTTAA
55122642 TAAACTGGGGCATAAGCCCTTTTTCAATAAACTAGGGCATAAGCCCTTTT
1 TAAACTGGGGCA-AAGCCCTTTTT-AATAAACTAGGGCATAAGCCCTTTT
55122692 GCACTTCCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
51 12 0.26
52 11 0.23
53 24 0.51
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.30
Consensus pattern (51 bp):
TAAACTGGGGCAAAGCCCTTTTTAATAAACTAGGGCATAAGCCCTTTTTAA
Found at i:55129692 original size:40 final size:40
Alignment explanation
Indices: 55129643--55129846 Score: 166
Period size: 40 Copynumber: 5.1 Consensus size: 40
55129633 CAGAATTTAA
** *
55129643 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAAC
* * *
55129683 CCGGTTATAGTAACTCGCACAAATGCCTTTGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * * * *
55129723 CCGGATTTAGTAACTTGCACCAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* **
55129762 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CATAAC
* * * *
55129802 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAAC
55129842 CCGGA
1 CCGGA
55129847 CATCTTTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.22
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:55129773 original size:79 final size:81
Alignment explanation
Indices: 55129664--55129846 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
55129654 TACTCGTTCA
* * *
55129664 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCC-TTCGGATCTTAACCCGG
*
55129727 ATTTAGTAACTT-GCACC
65 ATATAGTAACTTAGCA-C
* **
55129744 AATGCCTTTGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
55129807 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
55129823 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
55129847 CATCTTTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 5 0.06
79 58 0.65
80 26 0.29
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:55132249 original size:25 final size:25
Alignment explanation
Indices: 55132221--55132269 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
55132211 TTATAATATG
* *
55132221 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTTTACCCCTAGGT
55132246 AAAAATGACCATTTTACCCCTAGG
1 AAAAATGACCATTTTACCCCTAGG
55132270 GTTTAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (25 bp):
AAAAATGACCATTTTACCCCTAGGT
Found at i:55132362 original size:21 final size:22
Alignment explanation
Indices: 55132306--55132363 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
55132296 ATGTTGTTAT
55132306 ACATGATATGGC-ATG-GTATGC
1 ACATGATAT-GCTATGAGTATGC
*
55132327 ACATGATATGTTATGAG-ATGC
1 ACATGATATGCTATGAGTATGC
55132348 ACATGATATGCTATGA
1 ACATGATATGCTATGA
55132364 TATACTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (22 bp):
ACATGATATGCTATGAGTATGC
Found at i:55134295 original size:41 final size:40
Alignment explanation
Indices: 55134238--55134385 Score: 192
Period size: 41 Copynumber: 3.7 Consensus size: 40
55134228 TCGGGGTTTA
55134238 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCA-TGTCAT
*
55134279 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCACGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCATGTCAT
* * * * * * *
55134319 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC-ATGTCAT
55134359 AAT-CGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
55134386 TGAGTCAGCG
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
39 23 0.26
40 33 0.37
41 34 0.38
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (40 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCATGTCAT
Found at i:55134377 original size:40 final size:40
Alignment explanation
Indices: 55134242--55134385 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
55134232 GGTTTAAATC
*
55134242 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAAT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAATGTCATAAT
* *
55134282 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCC-ACGTCATAAC
1 -CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAATGTCATAAT
* * * * * * *
55134322 CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCATAAT
1 CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAATGTCATAAT
55134362 CGAGCTTGGTCTCGAAGGGCTTTT
1 CGAGCTTGGTCTCGAAGGGCTTTT
55134386 TGAGTCAGCG
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 22 0.26
40 33 0.39
41 29 0.35
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAGCTTGGTCTCGAAGGGCTTTTGAGCCAATGTCATAAT
Found at i:55142360 original size:41 final size:41
Alignment explanation
Indices: 55142303--55142452 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
55142293 TCGGGGTTTA
55142303 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
55142344 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGCGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
55142385 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
55142425 AATCCGAGCTTGGTCTCGAAGGGCTTTT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTT
55142453 TGAGTCAGCG
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
40 31 0.34
41 61 0.66
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:55146841 original size:63 final size:63
Alignment explanation
Indices: 55146742--55146869 Score: 229
Period size: 63 Copynumber: 2.0 Consensus size: 63
55146732 CATCGTACAT
* * *
55146742 AGTTTGACGAGGTGCTAAACACAAGATCTTCTAACGGGACGTTAAACACAAGGTGGTCCACTA
1 AGTTTGACGAGGTACTAAACACAAGATCGTCTAACGGGACGTTAAACAAAAGGTGGTCCACTA
55146805 AGTTTGACGAGGTACTAAACACAAGATCGTCTAACGGGACGTTAAACAAAAGGTGGTCCACTA
1 AGTTTGACGAGGTACTAAACACAAGATCGTCTAACGGGACGTTAAACAAAAGGTGGTCCACTA
55146868 AG
1 AG
55146870 ATAGTAAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (63 bp):
AGTTTGACGAGGTACTAAACACAAGATCGTCTAACGGGACGTTAAACAAAAGGTGGTCCACTA
Found at i:55149689 original size:10 final size:10
Alignment explanation
Indices: 55149674--55149699 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
55149664 AGTATTAAAG
55149674 CATTTAAGTA
1 CATTTAAGTA
55149684 CATTTAAGTA
1 CATTTAAGTA
55149694 CATTTA
1 CATTTA
55149700 TTCTAAAGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (10 bp):
CATTTAAGTA
Found at i:55151607 original size:15 final size:15
Alignment explanation
Indices: 55151583--55151614 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
55151573 ACCAAAATCC
*
55151583 ATTTATCTATTGACT
1 ATTTAGCTATTGACT
55151598 ATTTAGCTATTGACT
1 ATTTAGCTATTGACT
55151613 AT
1 AT
55151615 ATCTCTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.50
Consensus pattern (15 bp):
ATTTAGCTATTGACT
Found at i:55152989 original size:27 final size:29
Alignment explanation
Indices: 55152931--55152989 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
55152921 GATCTAAATT
* *
55152931 ATTCAAAATTTATTATAAAATTAATTAAA
1 ATTCAAAATTTATAATAAAATTAAGTAAA
*
55152960 ATTCAAAATTT-TAAT-AATTTAAGTAAA
1 ATTCAAAATTTATAATAAAATTAAGTAAA
55152987 ATT
1 ATT
55152990 TAATTATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
28 3 0.11
29 11 0.41
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (29 bp):
ATTCAAAATTTATAATAAAATTAAGTAAA
Found at i:55153671 original size:21 final size:21
Alignment explanation
Indices: 55153647--55153690 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
55153637 AGTACATATG
55153647 CTTTTCTCTTTT-TTTTTTGTT
1 CTTTT-TCTTTTCTTTTTTGTT
*
55153668 CTTTTTCTTTTCTTTTTTTTT
1 CTTTTTCTTTTCTTTTTTGTT
55153689 CT
1 CT
55153691 CAAGCATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (21 bp):
CTTTTTCTTTTCTTTTTTGTT
Found at i:55153672 original size:14 final size:14
Alignment explanation
Indices: 55153648--55153688 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
55153638 GTACATATGC
55153648 TTTTC-TCTTTTTT
1 TTTTCTTCTTTTTT
* *
55153661 TTTTGTTCTTTTTC
1 TTTTCTTCTTTTTT
55153675 TTTTCTT-TTTTTT
1 TTTTCTTCTTTTTT
55153688 T
1 T
55153689 CTCAAGCATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTCTTCTTTTTT
Found at i:55154968 original size:21 final size:21
Alignment explanation
Indices: 55154931--55154970 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
55154921 TCGATCTCTG
*
55154931 TGGAATCTTCTTCTTCTTCTT
1 TGGAATCCTCTTCTTCTTCTT
55154952 TGGAATCCTCATT-TTCTTC
1 TGGAATCCTC-TTCTTCTTC
55154971 AACTCATTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.12, C:0.25, G:0.10, T:0.53
Consensus pattern (21 bp):
TGGAATCCTCTTCTTCTTCTT
Found at i:55156665 original size:43 final size:43
Alignment explanation
Indices: 55156618--55156774 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
55156608 AACATATACA
*
55156618 ATGCCAACGTCCCAGATGTGGTCTTACACGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAACATCG
** * *
55156661 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAGATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAACATCG
* * * * * * *
55156703 ATGTCGATGTCCCAGACATGGTCTTACATGTAAAACATACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCAAACATCG
*
55156747 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
55156775 TGGAAACACA
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 25 0.27
43 39 0.43
44 27 0.30
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAACATCG
Found at i:55158183 original size:24 final size:24
Alignment explanation
Indices: 55158150--55158392 Score: 414
Period size: 24 Copynumber: 10.1 Consensus size: 24
55158140 GAATGTGACT
* *
55158150 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
**
55158174 ATAGCGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55158198 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55158222 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55158246 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55158270 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55158294 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55158318 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55158342 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55158366 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55158390 ATA
1 ATA
55158393 TGGTCTTTGC
Statistics
Matches: 211, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 211 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:55165405 original size:24 final size:24
Alignment explanation
Indices: 55165375--55165617 Score: 423
Period size: 24 Copynumber: 10.1 Consensus size: 24
55165365 GAATGTGACT
* *
55165375 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
55165399 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55165423 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55165447 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55165471 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55165495 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55165519 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55165543 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
55165567 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55165591 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
55165615 ATA
1 ATA
55165618 TGGTCTTTGC
Statistics
Matches: 213, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 213 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:55168256 original size:39 final size:39
Alignment explanation
Indices: 55168176--55168301 Score: 171
Period size: 39 Copynumber: 3.2 Consensus size: 39
55168166 CCGGCAATTT
* * *
55168176 GCCTGCTAGGTATAAACTTGAACTTAACACCAGCACAAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACAAG
* * *
55168215 GCCTACTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACAAG
* **
55168254 GCCTGCTAGGTATAAACCTGAATTTATCACCAGTATGAG
1 GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACAAG
55168293 GCCTGCTAG
1 GCCTGCTAG
55168302 ACATTAAGTC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAATTTATCACCAGCACAAG
Found at i:55170724 original size:11 final size:11
Alignment explanation
Indices: 55170708--55170738 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
55170698 TAACCTTATT
55170708 ATAAACATAAA
1 ATAAACATAAA
55170719 ATAAACATAAA
1 ATAAACATAAA
55170730 ATAAACATA
1 ATAAACATA
55170739 TATTAGATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (11 bp):
ATAAACATAAA
Found at i:55173396 original size:46 final size:43
Alignment explanation
Indices: 55173294--55173411 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 43
55173284 GGGGTGAGGT
*
55173294 GCCGATGCCATGTCCCAAACGTGGTCTTACATGACATATCTCGTA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACATGACATATCTCGTA
* *
55173339 GCCGATACATGTCCCAAACATGTCTTACACTGACTTACGTCTCG-A
1 GCCGATGCATGTCCCAAACATGTCTTACA-TGACATA--TCTCGTA
55173384 GGCCGATGCATGTCCCAAACATGTCTTA
1 -GCCGATGCATGTCCCAAACATGTCTTA
55173412 GCCGATGCCA
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
43 8 0.12
44 19 0.29
45 7 0.11
46 31 0.48
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (43 bp):
GCCGATGCATGTCCCAAACATGTCTTACATGACATATCTCGTA
Found at i:55173417 original size:27 final size:29
Alignment explanation
Indices: 55173385--55173440 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 29
55173375 ACGTCTCGAG
55173385 GCCGATG-CATGTCCCAAACAT-GTCTTA
1 GCCGATGCCATGTCCCAAACATGGTCTTA
*
55173412 GCCGATGCCATGTCCCAGACATGGTCTTA
1 GCCGATGCCATGTCCCAAACATGGTCTTA
55173441 TACTGGCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 7 0.27
28 13 0.50
29 6 0.23
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (29 bp):
GCCGATGCCATGTCCCAAACATGGTCTTA
Found at i:55173869 original size:30 final size:30
Alignment explanation
Indices: 55173829--55173887 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
55173819 AAATTCATAT
* * *
55173829 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGATAAAATGACCATCTTACCCCTAGA
55173859 CTTTGATAAAATGACCATCTTACCCCTAG
1 CTTTGATAAAATGACCATCTTACCCCTAG
55173888 GCCCGAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (30 bp):
CTTTGATAAAATGACCATCTTACCCCTAGA
Found at i:55177130 original size:25 final size:25
Alignment explanation
Indices: 55177102--55177163 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
55177092 TTAATTAGTA
* *
55177102 TAAAATATTAATAATTCAATAAATT
1 TAAAATATTAATAATTAAATAAAAT
55177127 TAAAA-ATTAAATAATTAAATAAAAT
1 TAAAATATT-AATAATTAAATAAAAT
*
55177152 TGAAAT-TTAATA
1 TAAAATATTAATA
55177164 GAAAAATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 7 0.22
25 25 0.78
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAAATATTAATAATTAAATAAAAT
Found at i:55177367 original size:14 final size:14
Alignment explanation
Indices: 55177348--55177378 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
55177338 CTGGTGTGCT
*
55177348 GGTGCGTGCGAGCA
1 GGTGCGTGAGAGCA
55177362 GGTGCGTGAGAGCA
1 GGTGCGTGAGAGCA
55177376 GGT
1 GGT
55177379 CTGGCGTGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (14 bp):
GGTGCGTGAGAGCA
Found at i:55181801 original size:39 final size:39
Alignment explanation
Indices: 55181749--55181975 Score: 262
Period size: 39 Copynumber: 5.8 Consensus size: 39
55181739 AACATGCATG
* *
55181749 ATATTTGAGAATTATATCCGGA-TTAAAAGTCCGCAGGCT
1 ATATGTGAGAATTATATCCGGACTT-AAAGTCCGTAGGCT
* *
55181788 ATATGTGGGAATTATATCCGGACTTAAAGTTCGTAGGCT
1 ATATGTGAGAATTATATCCGGACTTAAAGTCCGTAGGCT
** *
55181827 ATATGTGAGAATTATATCTAGACTTAAAGTCCATAGGCT
1 ATATGTGAGAATTATATCCGGACTTAAAGTCCGTAGGCT
*
55181866 ATATGCT-AGAATTATATCCGGACTTAAAGTCCGCAGGCT
1 ATATG-TGAGAATTATATCCGGACTTAAAGTCCGTAGGCT
** *
55181905 ATATGCAAGAATTATATCCGGACTTAAGGTCCGTAGGCT
1 ATATGTGAGAATTATATCCGGACTTAAAGTCCGTAGGCT
** * * *
55181944 ACGTGCTGGGAA-TATATCTGGGCTTAAAGTCC
1 ATATG-TGAGAATTATATCCGGACTTAAAGTCC
55181976 CGAAGGCTTT
Statistics
Matches: 160, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 154 0.96
40 6 0.04
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (39 bp):
ATATGTGAGAATTATATCCGGACTTAAAGTCCGTAGGCT
Found at i:55181962 original size:117 final size:117
Alignment explanation
Indices: 55181756--55181975 Score: 318
Period size: 117 Copynumber: 1.9 Consensus size: 117
55181746 ATGATATTTG
*** *
55181756 AGAATTATATCCGGATTAAAAGTCCGCAGGCTATATGTGGGAATTATATCCGGACTTAAAGTTCG
1 AGAATTATATCCGGATTAAAAGTCCGCAGGCTATATGCAAGAATTATATCCGGACTTAAAGTCCG
*
55181821 TAGGCTATATGTGAGAATTATATCTAGACTTAAAGTCCATAGGCTATATGCT
66 TAGGCTACATGTGAGAATTATATCTAGACTTAAAGTCCATAGGCTATATGCT
*
55181873 AGAATTATATCCGGACTT-AAAGTCCGCAGGCTATATGCAAGAATTATATCCGGACTTAAGGTCC
1 AGAATTATATCCGGA-TTAAAAGTCCGCAGGCTATATGCAAGAATTATATCCGGACTTAAAGTCC
* * * *
55181937 GTAGGCTACGTGCTGGGAA-TATATCTGGGCTTAAAGTCC
65 GTAGGCTACATG-TGAGAATTATATCTAGACTTAAAGTCC
55181976 CGAAGGCTTT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
117 84 0.92
118 7 0.08
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (117 bp):
AGAATTATATCCGGATTAAAAGTCCGCAGGCTATATGCAAGAATTATATCCGGACTTAAAGTCCG
TAGGCTACATGTGAGAATTATATCTAGACTTAAAGTCCATAGGCTATATGCT
Found at i:55192544 original size:28 final size:28
Alignment explanation
Indices: 55192504--55192573 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
55192494 ATGAAAATTT
* *
55192504 CACTAAGCATGCGAGTTTGGTTAAT-GAG
1 CACTAAGTATGCGAGTTTGATT-ATCGAG
*
55192532 CACTAAGTGTGCGAGTTTGATTATCGAG
1 CACTAAGTATGCGAGTTTGATTATCGAG
55192560 CACTAAGTATGCGA
1 CACTAAGTATGCGA
55192574 AAGAAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.05
28 35 0.95
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
CACTAAGTATGCGAGTTTGATTATCGAG
Found at i:55192902 original size:25 final size:23
Alignment explanation
Indices: 55192846--55192902 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
55192836 AGTTGAAAAG
55192846 TATAA-AATAAAATAAATAATAA
1 TATAATAATAAAATAAATAATAA
* *
55192868 TAATAATAATAAAATGATATGATATA
1 T-ATAATAATAAAAT-AAATAATA-A
55192894 TATAATAAT
1 TATAATAAT
55192903 GTTTGATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
22 1 0.03
23 4 0.14
24 8 0.28
25 14 0.48
26 2 0.07
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAAATAATAA
Found at i:55193501 original size:2 final size:2
Alignment explanation
Indices: 55193494--55193519 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
55193484 TGCATAATTG
55193494 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
55193520 GTTCGGCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:55200548 original size:39 final size:39
Alignment explanation
Indices: 55200497--55200676 Score: 211
Period size: 39 Copynumber: 4.6 Consensus size: 39
55200487 AATGTTCGAG
55200497 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
55200536 TGATATCTGGGCTAAGCCCGAA-GCAA-TGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
55200573 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
55200612 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
55200652 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
55200677 GTTTGAACGA
Statistics
Matches: 118, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
37 31 0.26
38 8 0.07
39 51 0.43
40 28 0.24
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:55207886 original size:24 final size:24
Alignment explanation
Indices: 55207594--55207878 Score: 516
Period size: 24 Copynumber: 11.9 Consensus size: 24
55207584 GCAAAGACCA
55207594 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55207618 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55207642 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55207666 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55207690 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
55207714 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
55207738 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55207762 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
55207786 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
55207810 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
55207834 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
55207858 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
55207879 TGCTATAGTC
Statistics
Matches: 256, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 256 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:55215942 original size:24 final size:24
Alignment explanation
Indices: 55215652--55215934 Score: 498
Period size: 24 Copynumber: 11.9 Consensus size: 24
55215642 GCAAAGACCA
55215652 TATGGCACTA--TGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55215674 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55215698 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55215722 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55215746 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
55215770 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
55215794 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
55215818 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTCAC
*
55215842 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
55215866 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
**
55215890 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTCAC
*
55215914 TATAGCACTATGTGTGCGATT
1 TATGGCACTATGTGTGCGATT
55215935 TGCTATAGTC
Statistics
Matches: 254, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
22 10 0.04
24 244 0.96
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:55222861 original size:40 final size:40
Alignment explanation
Indices: 55222795--55222961 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
55222785 AAATTGAATG
* * *
55222795 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
55222834 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
55222874 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
55222914 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
55222954 ATATCCGG
1 ATATCCGG
55222962 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:55225971 original size:40 final size:40
Alignment explanation
Indices: 55225863--55225972 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
55225853 ATTGAATGAT
* * * * *
55225863 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
55225903 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
55225943 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
55225973 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:55225987 original size:40 final size:39
Alignment explanation
Indices: 55225863--55226012 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
55225853 ATTGAATGAT
* * * * * * *
55225863 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
55225903 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
55225943 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
55225983 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
55226013 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:55230372 original size:40 final size:40
Alignment explanation
Indices: 55230276--55230494 Score: 258
Period size: 40 Copynumber: 5.5 Consensus size: 40
55230266 CGAATGATGT
* * * * *
55230276 CCGGGTTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
55230317 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
55230357 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
55230397 CCGGGTTAAGTCCCGGAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
55230437 CCGGGCTAATTCCCGAAGGCAATTATGCGAATTACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
55230477 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
55230495 ACAATCGAGC
Statistics
Matches: 155, Mismatches: 23, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 130 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:55230490 original size:120 final size:121
Alignment explanation
Indices: 55230276--55230494 Score: 307
Period size: 120 Copynumber: 1.8 Consensus size: 121
55230266 CGAATGATGT
* * *
55230276 CCGGGTTAAGTCCCGAAGGCTTTTGTGCTAAGTGATTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
55230341 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 ATGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
55230397 CCGGGTTAAGTCCCGGAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* * *
55230460 TATGCGAATTACTATAACCGGGCTATGTCCCGAAG
65 TATGCGAATTACCAAAACCGGGCTAAGTCCCGAAG
55230495 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
119 1 0.01
120 58 0.68
121 26 0.31
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (121 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
ATGCGAATTACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:55237278 original size:46 final size:46
Alignment explanation
Indices: 55237228--55237400 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
55237218 TTGAGCATCA
* *
55237228 GAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * *
55237274 GAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
55237321 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
55237367 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55237401 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:55237381 original size:93 final size:93
Alignment explanation
Indices: 55237222--55237392 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
55237212 GGATGATTGA
* **
55237222 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTTCGAACTCATTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAAGCCCGAACTCATTGAGT
55237287 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
55237315 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAGCTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAAGCCCGAACTCATTGAGT
*
55237380 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
55237393 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAAAGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55239038 original size:19 final size:19
Alignment explanation
Indices: 55239014--55239063 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
55239004 CGGGTTTGGG
55239014 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
55239033 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
55239052 ACACGGGCGTGT
1 ACACGGGCGTGT
55239064 GCTCTATACC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTAGC
Found at i:55240080 original size:46 final size:47
Alignment explanation
Indices: 55239985--55240139 Score: 192
Period size: 47 Copynumber: 3.3 Consensus size: 47
55239975 TTTGTATGCC
55239985 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGA-GGCT
*
55240033 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATATTATGA-GA-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT-TGA-GACGAGGCT
* *
55240079 AGTGTAAGACCATGTATGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAG-GCT
**
55240127 AGTACAAGACCAT
1 AGTGTAAGACCAT
55240140 AGTTGAACTA
Statistics
Matches: 93, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
45 2 0.02
46 23 0.25
47 33 0.35
48 33 0.35
49 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGCT
Found at i:55243633 original size:46 final size:46
Alignment explanation
Indices: 55243479--55243647 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
55243469 GAGCATCGAA
* ** *
55243479 CTCGTTGAGTTGAGTCCGAGTT-ACTTATGGATGCGAATGTTCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAG
* * *
55243524 CTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA--A-GC--CCGAG
55243571 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAG
55243617 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
55243648 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 10, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 25 0.24
46 36 0.35
47 26 0.25
48 4 0.04
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAG
Found at i:55243637 original size:93 final size:91
Alignment explanation
Indices: 55243471--55243639 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 91
55243461 GGATGGTTGA
* **
55243471 GCATCGAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCGAATGTTCGAACTCGTTGAGTTG
1 GCATCGAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCGAAAGCCCGAACTCGTTGAGTTG
55243536 AGTCCGAGTTCGTGAGATGTAACTAG
66 AGTCCGAGTTCGTGAGATGTAACTAG
* *
55243562 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAGCTCGTTGAGT
1 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTT-ACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
55243627 TGAGTCCGAGTTC
64 TGAGTCCGAGTTC
55243640 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 4 0.06
92 25 0.35
93 42 0.59
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (91 bp):
GCATCGAACTCGTTGAGTTGAGTCCGAGTTACTTATGGATGCGAAAGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAG
Found at i:55250936 original size:45 final size:45
Alignment explanation
Indices: 55250872--55251030 Score: 198
Period size: 45 Copynumber: 3.6 Consensus size: 45
55250862 CATACAGTAA
* * * *
55250872 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCAGGTGAAATAC
* * *
55250917 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCGGGTGAAATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCAGGTGAAATAC
* *
55250962 TATTCGAGCCTTCGAGCCTAGTAGGCTATAATGCAGGTGAAATGA-
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCAGGTGAAAT-AC
*
55251007 TA-TCGGG-CTTCAAGCCTAGCAGGC
1 TATTCGGGCCTTCGAGCCTAGCAGGC
55251031 GAAATGCCAG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
43 15 0.15
44 4 0.04
45 81 0.80
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCAGGTGAAATAC
Found at i:55256473 original size:17 final size:17
Alignment explanation
Indices: 55256440--55256473 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
55256430 ATGATGATGA
* *
55256440 AAAAAGAAAAGAGAAAG
1 AAAAAGAAAAAAAAAAG
55256457 AAAAAGAAAAAAAAAAG
1 AAAAAGAAAAAAAAAAG
55256474 CTCTCATGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAAAGAAAAAAAAAAG
Found at i:55257824 original size:40 final size:39
Alignment explanation
Indices: 55257728--55258020 Score: 375
Period size: 40 Copynumber: 7.5 Consensus size: 39
55257718 TGGATGATAA
* * *
55257728 CCGGACTAAGTCCCGAAGGCATT-TGCGCTGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG-AGTTACTA-TAT
* *
55257767 CAGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
55257807 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
*
55257847 CCGGGCTAAGTCCC-AAAGCATTGTGCGAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
55257884 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
55257924 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* *
55257964 CCGGGCTATG-CCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTA-CTATAT
* *
55258003 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
55258021 TACTTGGCTT
Statistics
Matches: 229, Mismatches: 15, Indels: 20
0.87 0.06 0.08
Matches are distributed among these distances:
37 22 0.10
38 20 0.09
39 71 0.31
40 110 0.48
41 6 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:55257868 original size:79 final size:80
Alignment explanation
Indices: 55257728--55258020 Score: 404
Period size: 79 Copynumber: 3.7 Consensus size: 80
55257718 TGGATGATAA
* * * * *
55257728 CCGGACTAAGTCCCGAAGGCATTTGCGC-TGTGACTAGT-TCAGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
*
55257791 GTGCGAGTTACTACAT
65 GTGCGAGTTACTATAT
*
55257807 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC-AAAGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
55257870 TGCGAG-TACTATAT
66 TGCGAGTTACTATAT
55257884 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
55257949 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* * * * *
55257964 CCGGGCTATG-CCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
55258021 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 13, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
77 61 0.31
78 30 0.15
79 67 0.34
80 37 0.19
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTATAT
Found at i:55257985 original size:117 final size:118
Alignment explanation
Indices: 55257728--55258020 Score: 407
Period size: 117 Copynumber: 2.5 Consensus size: 118
55257718 TGGATGATAA
* * *
55257728 CCGGACTAAGTCCCGAAGGCATT-TGCGCTGTGACTAGT-TCAGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG-AGT-ACTA-TATCCGGGCTAAGTCCCGAAGGCATTG
*
55257791 GTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63 GTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* *
55257847 CCGGGCTAAGTCCC-AAAGCATTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTG
*
55257911 CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
66 CGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
* * * *
55257964 CCGGGCTATG-CCCGAAGGCATTCGAGCGAGTAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTA-CTATATCCGGGCTAAGTCCCGAAGG
55258021 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
116 4 0.03
117 97 0.62
118 31 0.20
119 25 0.16
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTG
CGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
Found at i:55264441 original size:40 final size:39
Alignment explanation
Indices: 55264286--55264543 Score: 391
Period size: 39 Copynumber: 6.6 Consensus size: 39
55264276 TTGATGATAA
*
55264286 CCGGGCTAAGTCCCGAAGGCATT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTGTGCG--AGTTACTA-TAT
55264326 -CGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
55264364 CC-GGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
55264402 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
55264442 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAT
55264481 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
* * *
55264521 TCGGGCTATGTCCCAAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
55264544 CGAGCAATAG
Statistics
Matches: 206, Mismatches: 4, Indels: 16
0.91 0.02 0.07
Matches are distributed among these distances:
37 1 0.00
38 46 0.22
39 81 0.39
40 78 0.38
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAT
Found at i:55264499 original size:79 final size:79
Alignment explanation
Indices: 55264287--55264543 Score: 414
Period size: 79 Copynumber: 3.3 Consensus size: 79
55264277 TGATGATAAC
* * *
55264287 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T-CGGGCTAAGTCCCGAAGGCATT-G
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGG
55264349 TGCGAGTTACTATAT
65 TGCGAGTTACTATAT
*
55264364 CCGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
55264428 GCGAGTTACTATAT
66 GCGAGTTACTATAT
55264442 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
55264507 GCGAGTTACTATATT
66 GCGAGTTACTATA-T
* *
55264522 CGGGCTATGTCCCAAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATT
55264544 CGAGCAATAG
Statistics
Matches: 168, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
75 1 0.01
76 13 0.08
77 41 0.24
78 35 0.21
79 57 0.34
80 21 0.12
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTATAT
Found at i:55266604 original size:9 final size:9
Alignment explanation
Indices: 55266590--55266614 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
55266580 TTAGATTAAG
55266590 AATCAAAGA
1 AATCAAAGA
55266599 AATCAAAGA
1 AATCAAAGA
55266608 AATCAAA
1 AATCAAA
55266615 TTTGGATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.12, G:0.08, T:0.12
Consensus pattern (9 bp):
AATCAAAGA
Found at i:55267149 original size:16 final size:16
Alignment explanation
Indices: 55267128--55267163 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
55267118 GCATAACATG
55267128 AAGTAAAAGAATGAGT
1 AAGTAAAAGAATGAGT
55267144 AAGTAAAAGAATGAGT
1 AAGTAAAAGAATGAGT
55267160 AAGT
1 AAGT
55267164 TTGGTCTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.25, T:0.19
Consensus pattern (16 bp):
AAGTAAAAGAATGAGT
Found at i:55267295 original size:43 final size:41
Alignment explanation
Indices: 55267247--55267382 Score: 146
Period size: 43 Copynumber: 3.2 Consensus size: 41
55267237 GTTAAATGAT
*
55267247 ATATGTGTGTGCGTGTAAGACCATGTCTGGGACGTTGGCATCG
1 ATATGTGT-T-CGTGTAAGACCACGTCTGGGACGTTGGCATCG
* *
55267290 ATATGTGATTACGTGTAAGACCACGTCTAGGATGTTGGCATCG
1 ATATGTG-TT-CGTGTAAGACCACGTCTGGGACGTTGGCATCG
* * * * *
55267333 ATATGTGACTCTGTATAAGACTACATCTGGGACGTTTGCATCG
1 ATATGTG-TTC-GTGTAAGACCACGTCTGGGACGTTGGCATCG
55267376 ATATGTG
1 ATATGTG
55267383 ATTATGTGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 78 0.98
44 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.32
Consensus pattern (41 bp):
ATATGTGTTCGTGTAAGACCACGTCTGGGACGTTGGCATCG
Done.