Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 193 of 318
Found at i:60567445 original size:40 final size:40
Alignment explanation
Indices: 60567337--60567446 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
60567327 ATTGAATGAT
* * * * *
60567337 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
60567377 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
60567417 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
60567447 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:60567461 original size:40 final size:39
Alignment explanation
Indices: 60567337--60567486 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
60567327 ATTGAATGAT
* * * * * * *
60567337 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
60567377 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
60567417 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
60567457 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
60567487 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:60569441 original size:25 final size:25
Alignment explanation
Indices: 60569413--60569468 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
60569403 TAAGCTCCAC
* * * *
60569413 CGAGCTGGATATCATTAAGCTCTTA
1 CGAGCTGCAAATCAGTAAGCTCATA
*
60569438 CGAGCTGCAAATCGGTAAGCTCATA
1 CGAGCTGCAAATCAGTAAGCTCATA
60569463 CGAGCT
1 CGAGCT
60569469 CTGCCGAGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
CGAGCTGCAAATCAGTAAGCTCATA
Found at i:60575413 original size:27 final size:27
Alignment explanation
Indices: 60575379--60575559 Score: 245
Period size: 27 Copynumber: 6.7 Consensus size: 27
60575369 CAACATATAG
* *
60575379 GGGCAAAACAGTCATCTTACCTCATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
60575406 GGGTAAAACAATCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* * *
60575433 GAGCAAAATAGTCATTTTACCCCATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
60575460 GGGAAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
60575487 GGGCAAAACAATCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
60575514 GGGCAAAACAATCATTTTACCATATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
60575541 GGGCAAAATAGTCATTTTA
1 GGGCAAAACAGTCATTTTA
60575560 TTAATTTGGG
Statistics
Matches: 136, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.25
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCACATAA
Found at i:60576146 original size:340 final size:340
Alignment explanation
Indices: 60575526--60576206 Score: 1182
Period size: 340 Copynumber: 2.0 Consensus size: 340
60575516 GCAAAACAAT
* * *
60575526 CATTTTACCATATAAGGGCAAAATAGTCATTTTATTAATTTGGGGTCTACGCATACTTACCGACA
1 CATTTTACCACATAAAGGCAAAATAGTCATTTTATTAATTTAGGGTCTACGCATACTTACCGACA
* *
60575591 CAACAGTAGGTCTACAGTCGTTTCGGACGACCCGTGCAACCTTATCAATCAAACAGTGAAAATGG
66 CAACAGTAGGTCTACAGTCGTCTCAGACGACCCGTGCAACCTTATCAATCAAACAGTGAAAATGG
* * *
60575656 GCCTAAGGCCCATAATACGGTCTAATGTGGGCCCACATGCCCGTGTGGCCCACAAGCCCAAATTT
131 GCCTAAGGCCCATAATACGGACCAATATGGGCCCACATGCCCGTGTGGCCCACAAGCCCAAATTT
* * *
60575721 GGCCTTGGTCGTGTGGACTACACAGCCTGGCCTAATATTCTCTACATGTTCGTGTGGTTTACCCA
196 GGCCTTGGTCGTGTGGACTACACAGCCTAGCCCAATATTCTCCACATGTTCGTGTGGTTTACCCA
*
60575786 TGTGGGACCCACAAGCCCGTGGGCCCACACGGCCCATTCCAGCCCAACATAGCCTAAAACGGTCT
261 TGTGGGACCCACAAGCCCGTGGGCCCACACGGCCCATTCCAGCCCAACATAGCCCAAAACGGTCT
60575851 AAGCCCATAAAATCG
326 AAGCCCATAAAATCG
* *
60575866 CATTTTATCACATAAAGGCAAAATAGTCATTTTATTAATTTAGGGTCTACGCATACTTACCGACC
1 CATTTTACCACATAAAGGCAAAATAGTCATTTTATTAATTTAGGGTCTACGCATACTTACCGACA
60575931 CAACAGTAGGTCTACAGTCGTCTCAGACGACCCGTGCAACCTTATCAATCAAACAGTGAAAATGG
66 CAACAGTAGGTCTACAGTCGTCTCAGACGACCCGTGCAACCTTATCAATCAAACAGTGAAAATGG
*
60575996 GCCTAAGGCCCATAATGCGGACCAATATGGGCCCACATGCCCGTGTGGCCCACAAGCCCAAATTT
131 GCCTAAGGCCCATAATACGGACCAATATGGGCCCACATGCCCGTGTGGCCCACAAGCCCAAATTT
*
60576061 GGCCTTGGTCGTGTGGACTACATAGCCTAGCCCAATATTCTCCACATGTTCGTGTGGTTTACCCA
196 GGCCTTGGTCGTGTGGACTACACAGCCTAGCCCAATATTCTCCACATGTTCGTGTGGTTTACCCA
* * * *
60576126 TGTGGGGCTCACAAGCCCGTGGGCCCACACGGCCTATTCCAGCCCAACATGGCCCAAAACGGTCT
261 TGTGGGACCCACAAGCCCGTGGGCCCACACGGCCCATTCCAGCCCAACATAGCCCAAAACGGTCT
60576191 AAGCCCATAAAATCG
326 AAGCCCATAAAATCG
60576206 C
1 C
60576207 TCATGGTGGC
Statistics
Matches: 321, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
340 321 1.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (340 bp):
CATTTTACCACATAAAGGCAAAATAGTCATTTTATTAATTTAGGGTCTACGCATACTTACCGACA
CAACAGTAGGTCTACAGTCGTCTCAGACGACCCGTGCAACCTTATCAATCAAACAGTGAAAATGG
GCCTAAGGCCCATAATACGGACCAATATGGGCCCACATGCCCGTGTGGCCCACAAGCCCAAATTT
GGCCTTGGTCGTGTGGACTACACAGCCTAGCCCAATATTCTCCACATGTTCGTGTGGTTTACCCA
TGTGGGACCCACAAGCCCGTGGGCCCACACGGCCCATTCCAGCCCAACATAGCCCAAAACGGTCT
AAGCCCATAAAATCG
Found at i:60582971 original size:25 final size:26
Alignment explanation
Indices: 60582917--60582974 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
60582907 TGAACTCTTT
* *
60582917 CGAGCTA-AATATCGGTAAGCCCCTA
1 CGAGCTACAATATCAGTAAGCCCATA
* *
60582942 TGAGCTACAA-ATCAGTAAGCTCATA
1 CGAGCTACAATATCAGTAAGCCCATA
60582967 CGAGCTAC
1 CGAGCTAC
60582975 GGTGAGTCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
25 25 0.93
26 2 0.07
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (26 bp):
CGAGCTACAATATCAGTAAGCCCATA
Found at i:60583326 original size:48 final size:48
Alignment explanation
Indices: 60583253--60583348 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
60583243 CCCGATTTAA
* * * ** *
60583253 TTTCAAATATTGCTTTTTTTTATCTATATAGTCAAATTTAACTAATTT
1 TTTCAAATACTGCTTTTCTTGATCTATATAAACAAATTTAACAAATTT
*
60583301 TTTCGAATACTGCTTTTCTTGATCTATATAAACAAATTTAACAAATTT
1 TTTCAAATACTGCTTTTCTTGATCTATATAAACAAATTTAACAAATTT
60583349 AGGCATCATT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.49
Consensus pattern (48 bp):
TTTCAAATACTGCTTTTCTTGATCTATATAAACAAATTTAACAAATTT
Found at i:60588708 original size:25 final size:23
Alignment explanation
Indices: 60588670--60588716 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
60588660 AGTTTTCATT
60588670 CATTACTTTGTTTTCACAAGGAGGA
1 CATTACTTTGTTTT-A-AAGGAGGA
60588695 CATTACTTCT-TTTTAAAGGAGG
1 CATTACTT-TGTTTTAAAGGAGG
60588717 TAAGGCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 7 0.33
24 1 0.05
25 12 0.57
26 1 0.05
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (23 bp):
CATTACTTTGTTTTAAAGGAGGA
Found at i:60588738 original size:20 final size:20
Alignment explanation
Indices: 60588715--60588753 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
60588705 TTTTAAAGGA
60588715 GGTAAGGCATTTTGCATGAT
1 GGTAAGGCATTTTGCATGAT
60588735 GGTAAGGCATTTTGCATGA
1 GGTAAGGCATTTTGCATGA
60588754 ATTTTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (20 bp):
GGTAAGGCATTTTGCATGAT
Found at i:60603967 original size:48 final size:48
Alignment explanation
Indices: 60603860--60603977 Score: 114
Period size: 47 Copynumber: 2.5 Consensus size: 48
60603850 CTGCATTAAT
* * **
60603860 GTGACACTGTTCACGATTTTGATTATGTGGCAGTATATCTTCGATTTTG
1 GTGACAATGTTCACGA-TTTGGTTATGTGGCAGTATATCCACGATTTTG
* * * * *
60603909 TTGGC-TTGTTCACGATATTGGTTAT-TGGCATTTTATCCACGATTTTG
1 GTGACAATGTTCACGAT-TTGGTTATGTGGCAGTATATCCACGATTTTG
*
60603956 GTGACAATGTTCACAATTTGGT
1 GTGACAATGTTCACGATTTGGT
60603978 GTGTTAGATA
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
47 27 0.49
48 25 0.45
49 3 0.05
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.43
Consensus pattern (48 bp):
GTGACAATGTTCACGATTTGGTTATGTGGCAGTATATCCACGATTTTG
Found at i:60613660 original size:19 final size:20
Alignment explanation
Indices: 60613630--60613669 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
60613620 ATCAAGGACC
60613630 GTTTTCACAAAATCTACATT
1 GTTTTCACAAAATCTACATT
*
60613650 GTTTT-ACAAAATGTACATT
1 GTTTTCACAAAATCTACATT
60613669 G
1 G
60613670 ACATGATCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (20 bp):
GTTTTCACAAAATCTACATT
Found at i:60625229 original size:46 final size:48
Alignment explanation
Indices: 60625127--60625247 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 48
60625117 AAGCTAACGC
* * * *
60625127 CATGTCCCAGACAGGTTTTACACTAGCTTGTATATCTCAAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGTCGATG
* * * *
60625175 TATTTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGTCGATG
*
60625221 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
60625248 ACACATATTA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
46 37 0.60
47 2 0.03
48 23 0.37
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTACATCTCAAGGTCGATG
Found at i:60633151 original size:48 final size:48
Alignment explanation
Indices: 60632982--60633145 Score: 165
Period size: 48 Copynumber: 3.5 Consensus size: 48
60632972 AAGCTGACGC
* * * * *
60632982 CATGTCCCAAACAGGTCATACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAAGCCGATG
* * * * * *
60633030 CATGTCTCGGACATGTCTTACATTAG--T-TCTCGTCTC-AATACCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATC-TCTCGAA-GCCGATG
* *
60633076 CATGTCTCAGACATGTCTTACACTGGCTTGTATCTCTCGAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAAGCCGATG
60633124 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
60633146 TTGGCTCTCG
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.03
46 33 0.36
48 51 0.55
49 5 0.05
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAAGCCGATG
Found at i:60633155 original size:94 final size:95
Alignment explanation
Indices: 60632977--60633155 Score: 252
Period size: 94 Copynumber: 1.9 Consensus size: 95
60632967 AAAACAAGCT
* * *
60632977 GACGCCATGTCCCAAACAGGTCATACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTCGGAC
1 GACGCCATGTCCCAAACAGGTCATACACTAGCTTGTATATCTCGAAGCCGATGCATGTCCCAGAC
*
60633042 ATGTCTTACATTAGTTCTCGTCTCAATACC
66 ATGTCTTACATTAGCTCTCGTCTCAATACC
* * * * * *
60633072 GACG-CATGTCTCAGACATGTCTTACACTGGCTTGTATCTCTCGAAGCCGATGCATGTCCCAGAC
1 GACGCCATGTCCCAAACAGGTCATACACTAGCTTGTATATCTCGAAGCCGATGCATGTCCCAGAC
*
60633136 ATGTCTTACATTGGCTCTCG
66 ATGTCTTACATTAGCTCTCG
60633156 AAATGTGGCC
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
94 69 0.95
95 4 0.05
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (95 bp):
GACGCCATGTCCCAAACAGGTCATACACTAGCTTGTATATCTCGAAGCCGATGCATGTCCCAGAC
ATGTCTTACATTAGCTCTCGTCTCAATACC
Found at i:60635788 original size:16 final size:17
Alignment explanation
Indices: 60635767--60635801 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
60635757 ACCAAACACA
60635767 CACAAAT-AACCAAATT
1 CACAAATAAACCAAATT
*
60635783 CACAAATAAAGCAAATT
1 CACAAATAAACCAAATT
60635800 CA
1 CA
60635802 TCTTATAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.57, C:0.23, G:0.03, T:0.17
Consensus pattern (17 bp):
CACAAATAAACCAAATT
Found at i:60636963 original size:56 final size:56
Alignment explanation
Indices: 60636834--60636965 Score: 210
Period size: 56 Copynumber: 2.4 Consensus size: 56
60636824 AGACAGGGTT
*
60636834 TTACTCGCACATATATAACGGAATCACATATCGATGCCAACGTATTAAACGTGGTC
1 TTACTCGCACATATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTC
** * *
60636890 TTACTCATACACATATATTGGAATCACATATCGATGCCAACGTATTAAACGTGGTC
1 TTACTCGCACATATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTC
*
60636946 TTACTTGCACATATATATCG
1 TTACTCGCACATATATATCG
60636966 ATGCCATGGT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
TTACTCGCACATATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTC
Found at i:60640597 original size:47 final size:49
Alignment explanation
Indices: 60640475--60640654 Score: 191
Period size: 47 Copynumber: 3.8 Consensus size: 49
60640465 TGTAACCCGC
* * * * *
60640475 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-TA-G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
60640521 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
60640571 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
60640615 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
60640655 TCAACCATTC
Statistics
Matches: 113, Mismatches: 8, Indels: 22
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 1 0.01
46 35 0.31
47 59 0.52
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:60640643 original size:94 final size:93
Alignment explanation
Indices: 60640483--60640654 Score: 283
Period size: 94 Copynumber: 1.8 Consensus size: 93
60640473 GCCCATAAGT
* * *
60640483 GAACTCGGACTCAACTCAACGAGCTCTAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
60640548 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
60640576 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCCACATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCGAG-CATT-CACATCCATAAGTGAACTCGGACTCAACTC
60640640 AACGAGTTCGGATGC
64 AACGAGTTCGGATGC
60640655 TCAACCATTC
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
92 1 0.01
93 28 0.38
94 44 0.60
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60644083 original size:44 final size:44
Alignment explanation
Indices: 60643981--60644141 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
60643971 GTCGATGCCG
* * *
60643981 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
60644027 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
60644071 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
60644117 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
60644142 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:60644158 original size:46 final size:43
Alignment explanation
Indices: 60644024--60644186 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
60644014 CCGTGCTGAC
*
60644024 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
60644068 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
60644114 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
60644160 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
60644187 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:60646697 original size:46 final size:47
Alignment explanation
Indices: 60646630--60646759 Score: 226
Period size: 47 Copynumber: 2.8 Consensus size: 47
60646620 TGTAACCCGC
* * *
60646630 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-CACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
60646676 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
60646723 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60646760 TGCTCAACCA
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 38 0.47
47 42 0.52
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCCACAT
Found at i:60652477 original size:4 final size:4
Alignment explanation
Indices: 60652468--60652529 Score: 124
Period size: 4 Copynumber: 15.5 Consensus size: 4
60652458 GCACTTCGTC
60652468 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
60652516 TCTT TCTT TCTT TC
1 TCTT TCTT TCTT TC
60652530 ATCTTTCTAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 58 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
TCTT
Found at i:60661043 original size:9 final size:9
Alignment explanation
Indices: 60661019--60661052 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
60661009 AGAACAAAAC
*
60661019 TTGAGAAAA
1 TTGAGAGAA
60661028 TTGAGAGAA
1 TTGAGAGAA
*
60661037 TTGAGAGAG
1 TTGAGAGAA
60661046 TTGAGAG
1 TTGAGAG
60661053 TTTAGAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:60661702 original size:22 final size:22
Alignment explanation
Indices: 60661659--60661701 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
60661649 ATGCACTGAA
* *
60661659 ATAATCAAATCATACTTAAAAT
1 ATAATCAAATAAAACTTAAAAT
60661681 ATAATCAAAATAAAACTTAAA
1 ATAATC-AAATAAAACTTAAA
60661702 TTGGAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (22 bp):
ATAATCAAATAAAACTTAAAAT
Found at i:60671410 original size:29 final size:29
Alignment explanation
Indices: 60671377--60671456 Score: 124
Period size: 29 Copynumber: 2.8 Consensus size: 29
60671367 GCAAGTTATA
*
60671377 CTGATTTGGCTTTGGGCCATGAATGTTGG
1 CTGATTTGGCTTCGGGCCATGAATGTTGG
*
60671406 CTGATTTGGCTTCAGGCCATGAATGTTGG
1 CTGATTTGGCTTCGGGCCATGAATGTTGG
* *
60671435 TTGATTTGGCTTCGGGACATGA
1 CTGATTTGGCTTCGGGCCATGA
60671457 TATCGGTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.16, C:0.15, G:0.33, T:0.36
Consensus pattern (29 bp):
CTGATTTGGCTTCGGGCCATGAATGTTGG
Found at i:60671716 original size:2 final size:2
Alignment explanation
Indices: 60671711--60671736 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60671701 CTAAATATTG
60671711 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60671737 TCAAATTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60674889 original size:46 final size:44
Alignment explanation
Indices: 60674837--60674967 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 44
60674827 ATATATATAT
* *
60674837 ATATATATAGCCGAAGCCATTTCAATCAT-GCACACTAAGTGCCA
1 ATATATATAGCCGAAGCTATCTCAATC-TCGCACACTAAGTGCCA
**
60674881 ATACATATATAGCCGAAGCTATCTCGGTCTCGCACACTAAGTG-CA
1 AT--ATATATAGCCGAAGCTATCTCAATCTCGCACACTAAGTGCCA
*
60674926 AT-TATATAGCCGAAGCTATCTCAATTTCGCACACTAAGTGCC
1 ATATATATAGCCGAAGCTATCTCAATCTCGCACACTAAGTGCC
60674968 CGTGATTAAT
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
42 35 0.46
43 1 0.01
44 2 0.03
45 5 0.07
46 33 0.43
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (44 bp):
ATATATATAGCCGAAGCTATCTCAATCTCGCACACTAAGTGCCA
Found at i:60675507 original size:20 final size:21
Alignment explanation
Indices: 60675468--60675508 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60675458 ACTTGTATAA
60675468 CTATCATCAAACATTCAAAAT
1 CTATCATCAAACATTCAAAAT
*
60675489 CTATTATCAAACA-TCAAAAT
1 CTATCATCAAACATTCAAAAT
60675509 ACATGCTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (21 bp):
CTATCATCAAACATTCAAAAT
Found at i:60676439 original size:15 final size:15
Alignment explanation
Indices: 60676419--60676452 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
60676409 ATCAACCTTA
60676419 CTGTAATAACTAAAG
1 CTGTAATAACTAAAG
60676434 CTGTAATAACTAAAG
1 CTGTAATAACTAAAG
60676449 CTGT
1 CTGT
60676453 CACTCCAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (15 bp):
CTGTAATAACTAAAG
Found at i:60679784 original size:15 final size:15
Alignment explanation
Indices: 60679766--60679794 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
60679756 CTCTTATATC
60679766 ATTATCAATATGAGT
1 ATTATCAATATGAGT
60679781 ATTATCAATATGAG
1 ATTATCAATATGAG
60679795 GATGCAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
ATTATCAATATGAGT
Found at i:60681600 original size:18 final size:18
Alignment explanation
Indices: 60681577--60681612 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
60681567 TTTCTAGGAG
60681577 GTAGTCTATTATCAACTC
1 GTAGTCTATTATCAACTC
*
60681595 GTAGTCTTTTATCAACTC
1 GTAGTCTATTATCAACTC
60681613 CAACCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.42
Consensus pattern (18 bp):
GTAGTCTATTATCAACTC
Found at i:60692603 original size:24 final size:24
Alignment explanation
Indices: 60692550--60692674 Score: 128
Period size: 24 Copynumber: 5.2 Consensus size: 24
60692540 CAACCAAACG
* * **
60692550 TTGCACACATAGTG-CTTATTATG
1 TTGCACACATAGTGCCATAGTAAA
60692573 TTCGCACACATAGTGCCATAGTAAA
1 TT-GCACACATAGTGCCATAGTAAA
* *
60692598 TTGCACACATAGTGCTACAGTAAA
1 TTGCACACATAGTGCCATAGTAAA
* * *
60692622 TCGCACACATAGTGCTACAGTAAA
1 TTGCACACATAGTGCCATAGTAAA
* *
60692646 TCGCACACATAGTACCATAGTAAA
1 TTGCACACATAGTGCCATAGTAAA
60692670 -TGCAC
1 TTGCAC
60692675 TATGTCGCAC
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 6 0.07
24 76 0.85
25 7 0.08
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (24 bp):
TTGCACACATAGTGCCATAGTAAA
Found at i:60692668 original size:48 final size:48
Alignment explanation
Indices: 60692574--60692674 Score: 141
Period size: 48 Copynumber: 2.1 Consensus size: 48
60692564 CTTATTATGT
* * * *
60692574 TCGCACACATAGTGCCATAGTAAATTGCACACATAGTGCTACAGTAAA
1 TCGCACACATAGTGCCACAGTAAATCGCACACATAGTACCACAGTAAA
* *
60692622 TCGCACACATAGTGCTACAGTAAATCGCACACATAGTACCATAGTAAA
1 TCGCACACATAGTGCCACAGTAAATCGCACACATAGTACCACAGTAAA
60692670 T-GCAC
1 TCGCAC
60692675 TATGTCGCAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.09
48 43 0.91
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.22
Consensus pattern (48 bp):
TCGCACACATAGTGCCACAGTAAATCGCACACATAGTACCACAGTAAA
Found at i:60697237 original size:93 final size:97
Alignment explanation
Indices: 60697055--60697237 Score: 220
Period size: 93 Copynumber: 1.9 Consensus size: 97
60697045 GCCGACGCCA
* *
60697055 TGTCCCAGACATAGTCTTACACTAGCTAGCACATCAAAGTCGATGCCATGTCCTAGACAGGTCTT
1 TGTCCCAGACATAGTCTTACACTAGCTAGCACAACAAAGTCGATGCCATGTCCCAGACAGGTCTT
* * *
60697120 GCATTGACTTTCATATATCGAGGCCAATGTCG
66 ACATAGACTTTCATATATCAAGGCCAATGTCG
60697152 TGTCCCAGACA-AGTCTTACACT-GAC-A-CACAAC-AAG-CTGATGCCATGTCCCAGACAGGTC
1 TGTCCCAGACATAGTCTTACACTAG-CTAGCACAACAAAGTC-GATGCCATGTCCCAGACAGGTC
*
60697211 TTACACTAG-CTTGT-ATATCTCAAGGCC
64 TTACA-TAGACTT-TCATATATCAAGGCC
60697238 GATACTTGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
92 1 0.01
93 42 0.55
94 8 0.11
95 2 0.03
96 12 0.16
97 11 0.14
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (97 bp):
TGTCCCAGACATAGTCTTACACTAGCTAGCACAACAAAGTCGATGCCATGTCCCAGACAGGTCTT
ACATAGACTTTCATATATCAAGGCCAATGTCG
Found at i:60697345 original size:48 final size:46
Alignment explanation
Indices: 60697285--60697405 Score: 154
Period size: 48 Copynumber: 2.6 Consensus size: 46
60697275 CTTAATGCCA
* * *
60697285 ATGCATGTCCTAGAAATGTCTTACACTGGCT-TGTATATCTCGAGGCCG
1 ATGCATGTCCTAGACATGTCTTACACTGGCTCT-CATA-AT-GAGGCCG
* *
60697333 ATGCATGTCCTAGACATGTCTTACCCTGGCTCTCATAATGTGGCCG
1 ATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGAGGCCG
*
60697379 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCTAGACATGTCTTACACT
60697406 AGCACACATA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
46 31 0.48
47 1 0.02
48 32 0.49
49 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGAGGCCG
Found at i:60697365 original size:94 final size:94
Alignment explanation
Indices: 60697194--60697408 Score: 234
Period size: 94 Copynumber: 2.3 Consensus size: 94
60697184 AAGCTGATGC
* * *
60697194 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATACTTGTCCCAAACATGTT
1 CATGTCCCAGAAAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATACATGTCCCAAACATGTC
60697259 TTAAACTAGCTCTCGTCTTAATGCCAATG
66 TTAAACTAGCTCTCGTCTTAATGCCAATG
* * * * * * *
60697288 CATGTCCTAGAAATGTCTTACACTGGCTTGTATATCTCGAGGCCGATGCATGTCCTAGACATGTC
1 CATGTCCCAGAAAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATACATGTCCCAAACATGTC
** * * ** * *
60697353 TTACCCTGGCTCTCATAAT-GTGGCCGATG
66 TTAAACTAGCTCTCGTCTTAAT-GCCAATG
* *
60697382 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGAAAGGTCTTACACTAGC
60697409 ACACATATCA
Statistics
Matches: 99, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
93 1 0.01
94 98 0.99
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGAAAGGTCTTACACTAGCTTGTATATCTCAAGGCCGATACATGTCCCAAACATGTC
TTAAACTAGCTCTCGTCTTAATGCCAATG
Found at i:60705118 original size:16 final size:17
Alignment explanation
Indices: 60705087--60705119 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60705077 TTTCTTGAAT
*
60705087 ATTTTTGTACTTTTGAG
1 ATTTTTGTACTCTTGAG
60705104 ATTTTTGTA-TCTTGAG
1 ATTTTTGTACTCTTGAG
60705120 CTTTCTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.18, C:0.06, G:0.18, T:0.58
Consensus pattern (17 bp):
ATTTTTGTACTCTTGAG
Found at i:60705955 original size:46 final size:46
Alignment explanation
Indices: 60705801--60705971 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
60705791 TTTGTGTGCT
* * * * *
60705801 AGTGTAAGAAATGTCTGGGATATGCATCGGCCAC-ATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * *
60705847 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGAGAGCC
* *
60705895 AGTGTAATACATGTCTAGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-AGAGCC
60705941 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
60705972 TACAAGATGT
Statistics
Matches: 102, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 54 0.53
47 26 0.25
48 21 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:60705980 original size:46 final size:46
Alignment explanation
Indices: 60705801--60706014 Score: 168
Period size: 46 Copynumber: 4.6 Consensus size: 46
60705791 TTTGTGTGCT
* * * ** *
60705801 AGTGTAAGAAATGTCTGGGATATGCATCGGCCACATTATGAGAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
* ** * *
60705847 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-ATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CAAGATGAGAGCC
* * *
60705895 AGTGTAATACATGTCTAGGACATGCATCGGCCT-CGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATG-AGAGCC
* *
60705941 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
* *
60705985 AGTGTAAGACCACGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
60706015 AGTACGGACA
Statistics
Matches: 135, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 61 0.45
47 28 0.21
48 21 0.16
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGAGAGCC
Found at i:60706042 original size:50 final size:47
Alignment explanation
Indices: 60705977--60706111 Score: 157
Period size: 50 Copynumber: 2.8 Consensus size: 47
60705967 TCGGCTACAA
*
60705977 GATGTGTCAGTGTAAGACCACGTCTAGGACATGGCATCAGTACGGACATG
1 GATGAGTCAGTGTAAGACCACGTCTAGGACATGGCATCA--ACGGA-ATG
* * **
60706027 TGA-GAGTCAGGGTAAGACCATGTCTAGGACATGGCATCAACTTAATG
1 -GATGAGTCAGTGTAAGACCACGTCTAGGACATGGCATCAACGGAATG
*
60706074 GATGAGCCAGTGTAAGACCACGTCT-GGTACATGGCATC
1 GATGAGTCAGTGTAAGACCACGTCTAGG-ACATGGCATC
60706112 GACATTATAC
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 4 0.05
47 32 0.43
48 3 0.04
50 33 0.45
51 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (47 bp):
GATGAGTCAGTGTAAGACCACGTCTAGGACATGGCATCAACGGAATG
Found at i:60706107 original size:47 final size:49
Alignment explanation
Indices: 60705984--60706111 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 49
60705974 CAAGATGTGT
*
60705984 CAGTGTAAGACCACGTCTAGGACATGGCATCAGTACGGACATGTGAGAGT
1 CAGTGTAAGACCACGTCTAGGACATGGCATCAG-ACGGACATGTGAGAGC
* * **
60706034 CAGGGTAAGACCATGTCTAGGACATGGCATCA-ACTTA-ATG-GATGAGC
1 CAGTGTAAGACCACGTCTAGGACATGGCATCAGACGGACATGTGA-GAGC
60706081 CAGTGTAAGACCACGTCT-GGTACATGGCATC
1 CAGTGTAAGACCACGTCTAGG-ACATGGCATC
60706112 GACATTATAC
Statistics
Matches: 69, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
46 4 0.06
47 32 0.46
48 3 0.04
50 30 0.43
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCACGTCTAGGACATGGCATCAGACGGACATGTGAGAGC
Found at i:60708616 original size:40 final size:40
Alignment explanation
Indices: 60708542--60708768 Score: 307
Period size: 40 Copynumber: 5.5 Consensus size: 40
60708532 AACCCAAGTA
* *
60708542 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
60708581 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACT-------A-GCACAAATG
*
60708629 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
60708669 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
60708709 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
60708748 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
60708769 GTCATCCGAA
Statistics
Matches: 171, Mismatches: 7, Indels: 20
0.86 0.04 0.10
Matches are distributed among these distances:
39 36 0.21
40 95 0.56
41 2 0.01
48 38 0.22
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:60715185 original size:36 final size:36
Alignment explanation
Indices: 60715102--60715174 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
60715092 GTAATACGAG
*
60715102 TTCAATTTATCATCATAGCGTAGGATCTCGTAGTCA
1 TTCAATTTATCATCATAGCGTAGGATCTAGTAGTCA
60715138 TTCAATTTATCATCATAGCGTAGGATCTAGTAGTCA
1 TTCAATTTATCATCATAGCGTAGGATCTAGTAGTCA
60715174 T
1 T
60715175 ATACTTTATC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (36 bp):
TTCAATTTATCATCATAGCGTAGGATCTAGTAGTCA
Found at i:60721624 original size:29 final size:29
Alignment explanation
Indices: 60721590--60721662 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
60721580 ATCAACCACA
* *
60721590 CACACTTAGTGCCATGTACTTT-AAACTCG
1 CACACTTAGTGCCATGCA-TTTCAAACCCG
*
60721619 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCG
60721648 CACACTTAGTGCCAT
1 CACACTTAGTGCCAT
60721663 TCTCTCAACC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCG
Found at i:60722210 original size:2 final size:2
Alignment explanation
Indices: 60722203--60722235 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
60722193 CCGAATATGC
60722203 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60722236 CAACTATACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60724715 original size:12 final size:12
Alignment explanation
Indices: 60724698--60724725 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
60724688 TAGAGGCCAC
60724698 CATGGGCGATTT
1 CATGGGCGATTT
60724710 CATGGGCGATTT
1 CATGGGCGATTT
60724722 CATG
1 CATG
60724726 TGTTAGGCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (12 bp):
CATGGGCGATTT
Found at i:60725348 original size:33 final size:34
Alignment explanation
Indices: 60725290--60725383 Score: 102
Period size: 34 Copynumber: 2.8 Consensus size: 34
60725280 TTGCATGCTG
* * *
60725290 TACTGATTTTGTAATGGGCTTAGGCCC-CACTGA
1 TACTGATTCTGAAATGGGCTAAGGCCCACACTGA
* * *
60725323 TAC-GGTTACTGAAATGGGCTCAGGCCCACACTGT
1 TACTGATT-CTGAAATGGGCTAAGGCCCACACTGA
*
60725357 TTCTGATTCTGAAATGGGCTAAGGCCC
1 TACTGATTCTGAAATGGGCTAAGGCCC
60725384 TAACCAAAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 3 0.06
33 19 0.38
34 25 0.50
35 3 0.06
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (34 bp):
TACTGATTCTGAAATGGGCTAAGGCCCACACTGA
Found at i:60727479 original size:40 final size:40
Alignment explanation
Indices: 60727373--60727533 Score: 166
Period size: 40 Copynumber: 4.0 Consensus size: 40
60727363 CGGGATTTAA
* * *
60727373 CCGGATATAA-CACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * ** * * *
60727412 CCAGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
*
60727452 CCGGATATAA-CAACTCA-CACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACT-AGCACAAATGCCTTCGGGTCTTAGC
* *
60727492 CCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
60727532 CC
1 CC
60727534 TGGTATCATT
Statistics
Matches: 98, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 7 0.07
40 90 0.92
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:60739687 original size:50 final size:47
Alignment explanation
Indices: 60739632--60739761 Score: 154
Period size: 47 Copynumber: 2.7 Consensus size: 47
60739622 TACAAAATGT
*
60739632 GTCAGTGTAAGACCACGTCTGGGACATGGCATCAGCACGGACATGTGA-GA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCA--ACGGA-ATG-GATGA
* **
60739682 GTCAGTGTAAGACCATGTCTCGGACATGGCATCAACTTAATGGATGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACGGAATGGATGA
* * *
60739729 GCCAGTGTAAGACCATGTTTGGGACATGACATC
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATC
60739762 GGTATTATAC
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.48
48 3 0.04
50 32 0.45
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCAACGGAATGGATGA
Found at i:60739746 original size:47 final size:49
Alignment explanation
Indices: 60739490--60739761 Score: 157
Period size: 45 Copynumber: 5.8 Consensus size: 49
60739480 GGCCACGTTA
* ** *
60739490 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-ACACGGACATG
* * * * *
60739538 TGAGAGCTAGTGTAAGA-CAT-TCTAGGACAT-GCATTTCCCTC-GAGATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA--TCACACGGACATG
* * * * *
60739585 T-A-AGCCAGTGTAAGA-CATGTTTGAGACAT-GCATTGACTAC-AAAATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCA-TCAC-ACGGACATG
* *
60739631 T----GTCAGTGTAAGACCACGTCTGGGACATGGCATCAGCACGGACATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA-CACGGACATG
* * **
60739677 TGAGAGTCAGTGTAAGACCATGTCTCGGACATGGCATCA-ACTTA-ATG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCACACGGACATG
* *
60739724 -GATGAGCCAGTGTAAGACCATGTTTGGGACATGACATC
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
60739762 GGTATTATAC
Statistics
Matches: 180, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 11 0.06
45 40 0.22
46 38 0.21
47 40 0.22
48 19 0.11
50 32 0.18
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCACACGGACATG
Found at i:60747680 original size:28 final size:28
Alignment explanation
Indices: 60747615--60747713 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
60747605 TCATGAATTG
* * *
60747615 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
60747644 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
60747672 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
60747700 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60747714 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:60755543 original size:95 final size:95
Alignment explanation
Indices: 60755434--60755626 Score: 386
Period size: 95 Copynumber: 2.0 Consensus size: 95
60755424 TGAATTGTTG
60755434 AATTAGATTGGATATGATGGTGCCTTATGGCATATTGGTTAGAACTAGGAACTTGAGTTATTTTG
1 AATTAGATTGGATATGATGGTGCCTTATGGCATATTGGTTAGAACTAGGAACTTGAGTTATTTTG
60755499 GAAAATGTTTTGATGTGTTTTGAGTTGATT
66 GAAAATGTTTTGATGTGTTTTGAGTTGATT
60755529 AATTAGATTGGATATGATGGTGCCTTATGGCATATTGGTTAGAACTAGGAACTTGAGTTATTTTG
1 AATTAGATTGGATATGATGGTGCCTTATGGCATATTGGTTAGAACTAGGAACTTGAGTTATTTTG
60755594 GAAAATGTTTTGATGTGTTTTGAGTTGATT
66 GAAAATGTTTTGATGTGTTTTGAGTTGATT
60755624 AAT
1 AAT
60755627 ATGATTTAGT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 98 1.00
ACGTcount: A:0.27, C:0.05, G:0.26, T:0.42
Consensus pattern (95 bp):
AATTAGATTGGATATGATGGTGCCTTATGGCATATTGGTTAGAACTAGGAACTTGAGTTATTTTG
GAAAATGTTTTGATGTGTTTTGAGTTGATT
Found at i:60760050 original size:46 final size:46
Alignment explanation
Indices: 60760000--60760169 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
60759990 TTGAGCATCT
60760000 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * * * *
60760046 GAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* *
60760093 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
*
60760139 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60760170 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:60760153 original size:93 final size:93
Alignment explanation
Indices: 60759994--60760164 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60759984 GGATGGTTGA
* * *
60759994 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
60760059 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
60760087 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60760152 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60760165 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60774091 original size:47 final size:46
Alignment explanation
Indices: 60774026--60774288 Score: 177
Period size: 47 Copynumber: 5.6 Consensus size: 46
60774016 ATTGTTGGCT
60774026 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCACATTATGAGAGCC
* * ** * *
60774072 AGTGTAAGACCATGTCTGGGACATGGCATTGCCATTAAGAAGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGCCA-CATTATGAGAGCC
* * *
60774120 AGTGTAAGACATGGCTGGGAAAT-GCATCGGC-C-TTGA-GACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGCCACATT-ATGA-G--AGCC
* * * * * *
60774166 AGTGTAAGACATGTCTAGGACAT-ACATCGGCTACGA-GATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCAC-ATTATGAGAGCC
*
60774212 AGTGTAAGACCATGTCTGGGACATGGCATCG--AC-TTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGCCACATT---ATGAGAGCC
*
60774259 AGTGTAAGACAATGTCTAGGACATGGCATC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATC
60774289 AACACCTTAC
Statistics
Matches: 168, Mismatches: 30, Indels: 37
0.71 0.13 0.16
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 2 0.01
46 55 0.33
47 78 0.46
48 27 0.16
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCCACATTATGAGAGCC
Found at i:60778855 original size:21 final size:23
Alignment explanation
Indices: 60778831--60778877 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
60778821 AATATGTTGT
* *
60778831 AAATTTAAAGTTTA-TGATAGA-
1 AAATTAAAAGGTTATTGATAGAG
60778852 AAA-TAAAAGGTTATTGATAGAG
1 AAATTAAAAGGTTATTGATAGAG
60778874 AAAT
1 AAAT
60778878 CACTTTTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
20 8 0.38
21 10 0.48
22 3 0.14
ACGTcount: A:0.51, C:0.00, G:0.17, T:0.32
Consensus pattern (23 bp):
AAATTAAAAGGTTATTGATAGAG
Found at i:60778860 original size:20 final size:22
Alignment explanation
Indices: 60778837--60778877 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
60778827 TTGTAAATTT
*
60778837 AAAGTTTA-TGATAGA-AAATA
1 AAAGGTTATTGATAGAGAAATA
60778857 AAAGGTTATTGATAGAGAAAT
1 AAAGGTTATTGATAGAGAAAT
60778878 CACTTTTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 7 0.39
22 4 0.22
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (22 bp):
AAAGGTTATTGATAGAGAAATA
Found at i:60779583 original size:33 final size:33
Alignment explanation
Indices: 60779546--60779676 Score: 107
Period size: 33 Copynumber: 4.2 Consensus size: 33
60779536 CTATCGAATG
*
60779546 TGAAAAGGAAAGGTATACTTTGTGTATACCACA
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
** * * *
60779579 TGAAAAGGCTATGTACACTTTGTGTGTA-CACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
* * * *
60779611 TG-AAACGACA---A-ACTTCGTG--TACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
*
60779637 TGAAAAGGAAAGGTATACTTTGTGTATACCATT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACT
60779670 TGAAAAG
1 TGAAAAG
60779677 AAAATGTGCA
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
25 2 0.03
26 5 0.07
27 13 0.17
28 1 0.01
30 1 0.01
31 12 0.16
32 5 0.07
33 37 0.49
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.30
Consensus pattern (33 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACT
Found at i:60781315 original size:13 final size:13
Alignment explanation
Indices: 60781296--60781327 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
60781286 GTGCATGAGA
60781296 AATTTTGTGAGTT
1 AATTTTGTGAGTT
*
60781309 GATTTTGTGAGTT
1 AATTTTGTGAGTT
60781322 AATTTT
1 AATTTT
60781328 AATGTTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (13 bp):
AATTTTGTGAGTT
Found at i:60782374 original size:48 final size:46
Alignment explanation
Indices: 60782279--60782545 Score: 206
Period size: 47 Copynumber: 5.7 Consensus size: 46
60782269 TTTGTGCACT
* * ** *
60782279 AGTGTAAGACATGTCTGGGACATTCTTCGGCCACA-TTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CACAGAAATGAGTGCC
*
60782325 AGTGTAAGACCATGTCTGGGACACGACATCGGCACAGAAATGAGTGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCACAGAAATGAGTGCC
* * * * * *
60782373 AGAGTAAGACGTGTCTAGAACATGCATCGGC-CTCGACA-GAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAC-AGAAATGAG-T-GCC
* * * *
60782420 AGTGTAAGACGTGTCTGGGACATGCATCGGCTA-AG-AGT-TGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAAATGAGTGCC
* * *
60782464 AGTGTAAGACATGTCTGGGACATGCATCAGCAC-GCATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCACAG-A-A-ATGAGTGCC
60782512 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
60782546 ATTCATCCCA
Statistics
Matches: 177, Mismatches: 27, Indels: 30
0.76 0.12 0.13
Matches are distributed among these distances:
43 2 0.01
44 31 0.18
45 5 0.03
46 22 0.12
47 61 0.34
48 34 0.19
49 14 0.08
50 8 0.05
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAGAAATGAGTGCC
Found at i:60791622 original size:26 final size:26
Alignment explanation
Indices: 60791563--60791615 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
60791553 TTTACGAAAT
60791563 AGCCCTTTTTAGGTGTTTTCATGCAA
1 AGCCCTTTTTAGGTGTTTTCATGCAA
60791589 AGCCCTTTTTAGGTGTTTTCATGCAA
1 AGCCCTTTTTAGGTGTTTTCATGCAA
60791615 A
1 A
60791616 CTTCTTTCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (26 bp):
AGCCCTTTTTAGGTGTTTTCATGCAA
Found at i:60792557 original size:17 final size:17
Alignment explanation
Indices: 60792537--60792573 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
60792527 TATGTGCTGA
*
60792537 TTGGCGAAGTCTATGTT
1 TTGGCAAAGTCTATGTT
60792554 TTGGCAAAGTCTATGTT
1 TTGGCAAAGTCTATGTT
60792571 TTG
1 TTG
60792574 ATGGATTCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.19, C:0.11, G:0.27, T:0.43
Consensus pattern (17 bp):
TTGGCAAAGTCTATGTT
Found at i:60797544 original size:42 final size:41
Alignment explanation
Indices: 60797490--60797611 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 41
60797480 CAGGGTTAGT
60797490 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGCATCGATA
* *
60797532 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGCATCGATA
* * * * *
60797575 CGAGATCCCATGTGAGACCATATCTAGGATATGGCAT
1 TGAGAT-TCGTGTAAGACCATATCTGGGATATGGCAT
60797612 TGGTATGGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:60797724 original size:20 final size:20
Alignment explanation
Indices: 60797694--60797740 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
60797684 CGAAAATGTT
*
60797694 TAAGCTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
60797714 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
60797734 TAAGTTG
1 TAAGTTG
60797741 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:60800179 original size:37 final size:37
Alignment explanation
Indices: 60800126--60800228 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
60800116 CGAATAGTCC
*
60800126 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
60800163 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
60800200 CCACATGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
60800229 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:60800427 original size:48 final size:48
Alignment explanation
Indices: 60800369--60801067 Score: 1155
Period size: 48 Copynumber: 14.6 Consensus size: 48
60800359 ATATACACAC
* *
60800369 ATCTCCTACATATTTCACACTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
60800417 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60800465 ATCTCATTCTTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60800513 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
60800561 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATGTGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
60800609 ATCTCATATATATTTCACACTAGCCATTCGACTTTACCACATGTGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60800657 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
60800705 ATCTCATACATATTGCACATTAGCAATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60800753 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60800801 ATCTCAAACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60800849 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60800897 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60800945 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
60800993 ATCTCATTCATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60801041 ATCTCATTCATATTTCACACTAGCCAT
1 ATCTCATACATATTTCACACTAGCCAT
60801068 ATATATTTCA
Statistics
Matches: 617, Mismatches: 34, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 617 1.00
ACGTcount: A:0.30, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60800629 original size:144 final size:145
Alignment explanation
Indices: 60800369--60801341 Score: 1388
Period size: 144 Copynumber: 6.6 Consensus size: 145
60800359 ATATACACAC
* * *
60800369 ATCTCCTA-CATATTTCACACTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
* *
60800433 ACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCTTATTTCACACTAGCCATTCGGCT
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCT
60800498 TTACCACATATACAT
131 TTACCACATATACAT
60800513 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
* * * *
60800577 ACACTAGCCATTCGGCTTTACCACATGTGCATATCTCATAT-ATATTTCACACTAGCCATTCGAC
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTCAT-TCATATTTCACACTAGCCATTCGGC
* *
60800641 TTTACCACATGTGCAT
130 TTTACCACATATACAT
* * *
60800657 ATCTCATAT-ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTGC
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
* * * *
60800721 ACATTAGCAATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTTGGCT
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCT
60800786 TTACCACATATACAT
131 TTACCACATATACAT
*
60800801 ATCTCA-AACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT-ATATTT
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-TCATATTT
* * *
60800864 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
65 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGC
60800929 TTTACCACATATACAT
130 TTTACCACATATACAT
60800945 ATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
* ***
60801009 ACATTAGCCATTCGGCTTTACCACATATGCATATCTCATTCATATTTCACACTAGCCATAT-ATA
66 ACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCAT-TCGGC
*
60801073 TTTCACACTAGCCATTCAGCTTTACCAC
130 TTT-AC-C-A--CA-T-A----TA-CAT
* *
60801101 ATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAC
1 ATCT-CATA--TC----ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTC
*
60801166 ATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCA
59 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCA
60801231 TTCGGCTTTACCACATATACAT
124 TTCGGCTTTACCACATATACAT
* * *
60801253 ATCTAATA-CATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
60801317 ACATTAGCCATTCGGCTTTACCACA
66 ACATTAGCCATTCGGCTTTACCACA
60801342 CACATATATA
Statistics
Matches: 749, Mismatches: 50, Indels: 60
0.87 0.06 0.07
Matches are distributed among these distances:
143 2 0.00
144 589 0.79
145 6 0.01
146 1 0.00
147 1 0.00
148 1 0.00
149 2 0.00
150 1 0.00
151 4 0.01
152 5 0.01
153 2 0.00
155 2 0.00
156 5 0.01
157 5 0.01
158 1 0.00
159 3 0.00
161 1 0.00
162 1 0.00
163 3 0.00
164 114 0.15
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (145 bp):
ATCTCATATCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTC
ACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCT
TTACCACATATACAT
Found at i:60801075 original size:20 final size:20
Alignment explanation
Indices: 60801050--60801087 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
60801040 TATCTCATTC
60801050 ATATTTCACACTAGCCATAT
1 ATATTTCACACTAGCCATAT
60801070 ATATTTCACACTAGCCAT
1 ATATTTCACACTAGCCAT
60801088 TCAGCTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.05, T:0.34
Consensus pattern (20 bp):
ATATTTCACACTAGCCATAT
Found at i:60801089 original size:116 final size:116
Alignment explanation
Indices: 60800949--60801183 Score: 409
Period size: 116 Copynumber: 2.0 Consensus size: 116
60800939 ATACATATCT
* *
60800949 CATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-TCATATTTCACAT
1 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT-ATATTTCACAC
* *
60801013 TAGCCATTCGGCTTTACCACATATGCATATCTCATTCATATTTCACACTAGC
65 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
60801065 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
1 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
*
60801130 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
60801181 CAT
1 CAT
60801184 TTGGCTTTAC
Statistics
Matches: 113, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
116 112 0.99
117 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (116 bp):
CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGC
Found at i:60801111 original size:68 final size:68
Alignment explanation
Indices: 60801002--60801135 Score: 225
Period size: 68 Copynumber: 2.0 Consensus size: 68
60800992 TATCTCATTC
* * *
60801002 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCAT-TCATATTTCACACTAGCC
1 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT-ATATTTCACACTAGCC
60801066 ATAT
65 ATAT
60801070 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
60801135 T
66 T
60801136 TCGGCTTTAC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
68 61 0.98
69 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (68 bp):
ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
TAT
Found at i:60801123 original size:48 final size:48
Alignment explanation
Indices: 60801065--60801341 Score: 473
Period size: 48 Copynumber: 5.8 Consensus size: 48
60801055 TCACACTAGC
* *
60801065 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCT
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
60801113 CATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
* *
60801161 CATACATATTTCACATTAGCCATTTGGCTTTACCACATATACATATCT
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
60801209 CATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
* *
60801257 AATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
*
60801305 CATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 CATACATATTTCACACTAGCCATTCGGCTTTACCACA
60801342 CACATATATA
Statistics
Matches: 218, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 218 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
CATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:60801177 original size:164 final size:164
Alignment explanation
Indices: 60800901--60801231 Score: 608
Period size: 164 Copynumber: 2.0 Consensus size: 164
60800891 ATACATATCT
* *
60800901 CATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACT
1 CATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
*
60800966 AGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACATTAGCCATTCGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
*
60801031 ACATATGCATATCTCATTCATATTTCACACTAGC
131 ACATATACATATCTCATTCATATTTCACACTAGC
*
60801065 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
1 CATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
*
60801130 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
60801195 ACATATACATATCTCATTCATATTTCACACTAGC
131 ACATATACATATCTCATTCATATTTCACACTAGC
60801229 CAT
1 CAT
60801232 TCGGCTTTAC
Statistics
Matches: 161, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
164 161 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (164 bp):
CATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
ACATATACATATCTCATTCATATTTCACACTAGC
Found at i:60801220 original size:212 final size:212
Alignment explanation
Indices: 60800853--60801279 Score: 755
Period size: 212 Copynumber: 2.0 Consensus size: 212
60800843 ATACATATCT
* *
60800853 CATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT
1 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACT
*
60800918 AGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
* * *
60800983 ACATATACATATCTCATTCATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCAT
131 ACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAAT
*
60801048 TCATATTTCACACTAGC
196 ACATATTTCACACTAGC
*
60801065 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACT
1 CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACT
* *
60801130 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACC
66 AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
60801195 ACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAAT
131 ACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAAT
*
60801260 ACATATTTCACATTAGC
196 ACATATTTCACACTAGC
60801277 CAT
1 CAT
60801280 TCGGCTTTAC
Statistics
Matches: 204, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
212 204 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (212 bp):
CATATATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCACACT
AGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACC
ACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAAT
ACATATTTCACACTAGC
Found at i:60801304 original size:260 final size:260
Alignment explanation
Indices: 60800810--60801327 Score: 957
Period size: 260 Copynumber: 2.0 Consensus size: 260
60800800 TATCTCAAAC
*
60800810 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
60800875 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
* *
60800940 TACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATA
131 TACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAATACATA
* *
60801005 TTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATTCATATTTCACACTAGCCATAT
196 TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATAT
60801070 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
*
60801135 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATA
66 TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
60801200 TACATATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAATACAT
131 TACATATCTCATAT-ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAATACAT
*
60801264 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCAT
195 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCAT
60801328 TCGGCTTTAC
Statistics
Matches: 250, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
259 1 0.00
260 249 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (260 bp):
ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
TACATATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTAATACATA
TTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATAT
Found at i:60804546 original size:40 final size:40
Alignment explanation
Indices: 60804490--60804682 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
60804480 GAATGCACAT
* * * *
60804490 CACCAGCATGATTGCTCTTCGAGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
60804530 CACTAGTACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
60804570 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
60804610 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
60804650 CACCAGCACGAATACACTTCGGGACTTAGCCCG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCG
60804683 ACTATATAAC
Statistics
Matches: 142, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:60806225 original size:48 final size:48
Alignment explanation
Indices: 60806167--60806732 Score: 976
Period size: 48 Copynumber: 11.9 Consensus size: 48
60806157 ATATACACAC
*
60806167 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806215 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60806263 ATCTCATTCTTATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806311 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCAC-TATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806358 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACA-ATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806405 ATCTCATATATATTT-ACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60806452 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806500 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806548 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806596 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
60806644 ATCTAATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
60806692 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
60806733 CACATATATA
Statistics
Matches: 495, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 25 0.05
47 86 0.17
48 384 0.78
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:60807511 original size:12 final size:12
Alignment explanation
Indices: 60807494--60807520 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60807484 TTATGCCCTA
60807494 TTATGATTGAAT
1 TTATGATTGAAT
60807506 TTATGATTGAAT
1 TTATGATTGAAT
60807518 TTA
1 TTA
60807521 CTCAACGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (12 bp):
TTATGATTGAAT
Found at i:60809154 original size:27 final size:28
Alignment explanation
Indices: 60809098--60809166 Score: 131
Period size: 27 Copynumber: 2.5 Consensus size: 28
60809088 AAATTTGTAC
60809098 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60809126 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60809153 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
60809167 AGACTCACTA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:60811988 original size:40 final size:40
Alignment explanation
Indices: 60811922--60812088 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
60811912 AAATTGAATG
* * *
60811922 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
60811961 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
60812001 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
60812041 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
60812081 ATATCCGG
1 ATATCCGG
60812089 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:60819854 original size:27 final size:28
Alignment explanation
Indices: 60819798--60819867 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
60819788 AAATTTGTAC
60819798 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60819826 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60819853 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60819868 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:60826417 original size:40 final size:38
Alignment explanation
Indices: 60826368--60826474 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 38
60826358 ATCACGATTT
*
60826368 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60826408 GCACGAATGCCTTC-GGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60826447 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60826475 TTATAATTTC
Statistics
Matches: 59, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
37 1 0.02
38 4 0.07
39 29 0.49
40 25 0.42
ACGTcount: A:0.21, C:0.30, G:0.25, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60826458 original size:39 final size:39
Alignment explanation
Indices: 60826368--60826517 Score: 126
Period size: 40 Copynumber: 3.8 Consensus size: 39
60826358 ATCACGATTT
*
60826368 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
60826408 GCACGAATGCCTTC-GGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * * ** *
60826447 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
60826487 GCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
60826518 TCATTCAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
37 1 0.01
38 4 0.04
39 29 0.33
40 54 0.61
41 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:60828864 original size:27 final size:27
Alignment explanation
Indices: 60828840--60829117 Score: 290
Period size: 27 Copynumber: 10.3 Consensus size: 27
60828830 TTAGTTTACG
**
60828840 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
60828867 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCT-TGGTTTGTA
* * *
60828894 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
** *
60828921 AAATCGCCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
60828948 AAATTACCAAAATACCCTTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
60828975 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
60829002 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
60829029 AAATTACCAAAATACCCTCGACTTT-TA
1 AAATTACCAAAATACCCTTG-GTTTGTA
*** * **
60829056 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
60829083 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
60829110 GAATTACC
1 AAATTACC
60829118 GTTTTACCCT
Statistics
Matches: 208, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.02
27 197 0.95
28 6 0.03
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:60829069 original size:81 final size:82
Alignment explanation
Indices: 60828840--60829156 Score: 306
Period size: 81 Copynumber: 3.9 Consensus size: 82
60828830 TTAGTTTACG
* *
60828840 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATA-CCTCTG-GTTTGTAAAATTACT-
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTC-GAGTTTGTAAAATTACTG
* * *
60828902 AGAATACCCTTGGTTTATA
65 A-AATACCCCTGATTTGTA
** * * **
60828921 AAATCGCCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-TAGTTTGTAAAATTACCAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGAGTTTGTAAAATTACTGA
*
60828985 AATACCCCTGATTTGTG
66 AATACCCCTGATTTGTA
* * * *
60829002 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTCGACTTT-TAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGAGTTTGTAAAATTACTGA
*
60829066 AATA-CCCTCGACTTGTA
66 AATACCCCT-GATTTGTA
* * * * **** ** *
60829083 AAATTACCAAAGTACCCTTGATTTATAGAATTACCGTTTTACCCTCGA-TTTACAAAATTATTGA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGAGTTTGTAAAATTACTGA
60829147 AATACCCCTG
66 AATACCCCTG
60829157 TAGGGTAGAA
Statistics
Matches: 197, Mismatches: 32, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
80 7 0.04
81 178 0.90
82 12 0.06
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (82 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCTCGAGTTTGTAAAATTACTGA
AATACCCCTGATTTGTA
Found at i:60829152 original size:27 final size:27
Alignment explanation
Indices: 60828840--60829153 Score: 104
Period size: 27 Copynumber: 11.6 Consensus size: 27
60828830 TTAGTTTACG
* * * * *
60828840 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTATCGAAATACCCTCGATTTATA
* * * *
60828867 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTATCGAAATACCCTC-GATTTATA
* * *
60828894 AAATTA-CTAGAATACCCTTGGTTTATA
1 AAATTATCGA-AATACCCTCGATTTATA
*** * * *
60828921 AAATCGCCAAAATACCC-CTGGTTTGTA
1 AAATTATCGAAATACCCTC-GATTTATA
* * * *
60828948 AAATTACCAAAATACCCT-TAGTTTGTA
1 AAATTATCGAAATACCCTCGA-TTTATA
* * * *
60828975 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTATCGAAATACCCTC-GATTTATA
* * * *
60829002 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTATCGAAATACCCTCGA-TTTATA
* *
60829029 AAATTACCAAAATACCCTCGACTTT-TA
1 AAATTATCGAAATACCCTCGA-TTTATA
* * *
60829056 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTATCGAAATACCCTCGATTTATA
* *
60829083 AAATTA-CCAAAGTACCCTTGATTTATA
1 AAATTATCGAAA-TACCCTCGATTTATA
* * *** *
60829110 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTATCGAAATACCCTCGATTTATA
*
60829137 AAATTATTGAAATACCC
1 AAATTATCGAAATACCC
60829154 CTGTAGGGTA
Statistics
Matches: 230, Mismatches: 43, Indels: 28
0.76 0.14 0.09
Matches are distributed among these distances:
26 11 0.05
27 207 0.90
28 12 0.05
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATTTATA
Found at i:60829168 original size:27 final size:27
Alignment explanation
Indices: 60829145--60829630 Score: 657
Period size: 27 Copynumber: 18.0 Consensus size: 27
60829135 CAAAATTATT
60829145 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
60829172 GAAACACCCTTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829199 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829226 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60829253 GAAATACCCTTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829280 GAAATACCCATGTAAGGTAGAATTCCC
1 GAAATACCCCTGTAGGGTAGAATTACC
60829307 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
60829334 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60829361 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829388 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829415 AAAATACCCCTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60829442 GAAATACCCCTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60829469 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60829496 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60829523 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60829550 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60829577 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
60829604 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
60829631 ATTTTACCCT
Statistics
Matches: 412, Mismatches: 47, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 412 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:60829638 original size:27 final size:27
Alignment explanation
Indices: 60829608--60829673 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
60829598 ATTATCGAGA
60829608 TACCCTTGTGGGGTAAAATTACCATTT
1 TACCCTTGTGGGGTAAAATTACCATTT
* * **
60829635 TACCCTTAGT-GTGTTAAATTACTGTTT
1 TACCCTT-GTGGGGTAAAATTACCATTT
*
60829662 TGCCCTTGTGGG
1 TACCCTTGTGGG
60829674 CAAGTGACTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.06
27 27 0.87
28 2 0.06
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (27 bp):
TACCCTTGTGGGGTAAAATTACCATTT
Found at i:60830174 original size:6 final size:6
Alignment explanation
Indices: 60830143--60830199 Score: 55
Period size: 6 Copynumber: 9.3 Consensus size: 6
60830133 TTGCATTCAC
* *
60830143 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
60830191 AGTTCTG AT
1 A-TTCTG AT
60830200 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 2 0.05
6 35 0.83
7 4 0.10
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60832083 original size:28 final size:28
Alignment explanation
Indices: 60832038--60832105 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
60832028 ATTTAAAACC
*
60832038 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
*
60832065 TAGGGGTAATTTCGGTAATTTTGTTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
60832093 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
60832106 TGTTCTCGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 18 0.47
28 20 0.53
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.46
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:60833755 original size:20 final size:20
Alignment explanation
Indices: 60833732--60833769 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
60833722 CACATCCAAA
*
60833732 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
60833752 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
60833770 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:60834461 original size:40 final size:41
Alignment explanation
Indices: 60834400--60834533 Score: 141
Period size: 40 Copynumber: 3.3 Consensus size: 41
60834390 TTGGAATGAT
* * *
60834400 ATCCGGGCTAAGTCCCAAAGGCAATT-ATACTAG-TAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAA-TAC
* * *
60834440 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAC
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
* * * *
60834480 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
60834520 ATCCGGGCTAAGAC
1 ATCCGGGCTAAGAC
60834534 TCGAGGGCCT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.04
40 80 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (41 bp):
ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
Found at i:60834564 original size:40 final size:40
Alignment explanation
Indices: 60834440--60834591 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
60834430 TAGTAATTAC
*
60834440 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAC
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAA
*
60834480 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAA
* * * * * *
60834520 ATCCGGGCTAAGACTCGAGGGCCTTTGTGCAAGTT-ACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAA
** *
60834560 ATCCGGTTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
60834592 ATCACTATAA
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 94 0.99
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAA
Found at i:60841727 original size:40 final size:41
Alignment explanation
Indices: 60841668--60841805 Score: 149
Period size: 40 Copynumber: 3.4 Consensus size: 41
60841658 TTGGAATGAT
* *
60841668 ATCCGGGCTAAGTCCCGAAGGCAATT-ATACTAG-TAATTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAA-TAC
* * * *
60841708 ATCTGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAC
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
* * * *
60841748 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
60841788 ATCCGGGCTAAGACCCGA
1 ATCCGGGCTAAGACCCGA
60841806 GGGCCTTTGT
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.03
40 83 0.94
41 2 0.02
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
ATCCGGGCTAAGACCCGAAGGCAATTCATACGAGTTAATAC
Found at i:60841801 original size:80 final size:80
Alignment explanation
Indices: 60841668--60841859 Score: 199
Period size: 80 Copynumber: 2.4 Consensus size: 80
60841658 TTGGAATGAT
* ** * * * * *
60841668 ATCCGGGCTAAGTCCCGAAGGCAATTATACTAG-TAATTACATCTGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCAT
* * *
60841732 TCGTGCGAGTTGA-TAC
65 TCGTGCAAGTT-ACCAA
* * *
60841748 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAGGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
60841813 TGTGCAAGTTACCAA
66 CGTGCAAGTTACCAA
**
60841828 ATCCGGTTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGA
60841860 ATCACTATAA
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
79 1 0.01
80 89 0.97
81 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTACCAA
Found at i:60841832 original size:40 final size:40
Alignment explanation
Indices: 60841712--60841859 Score: 190
Period size: 40 Copynumber: 3.7 Consensus size: 40
60841702 AATTACATCT
*
60841712 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATACATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAAATCC
*
60841752 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAAATCC
* * * * *
60841792 GGGCTAAGACCCGAGGGCCTTTGTGCAAGTT-ACCAAATCC
1 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAAATCC
** *
60841832 GGTTTAAGACCCGAAGGCAATCGTGCGA
1 GGGCTAAGACCCGAAGGCATTCGTGCGA
60841860 ATCACTATAA
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 92 0.99
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAAATCC
Found at i:60841874 original size:80 final size:80
Alignment explanation
Indices: 60841712--60841887 Score: 194
Period size: 80 Copynumber: 2.2 Consensus size: 80
60841702 AATTACATCT
* * * *
60841712 GGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATACATCCGGGCTAAGACCCGAAGGCATTCGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGACAAATCCGGGCTAAGACCCGAAGGCAATCGTG
* * *
60841777 CGAGTTGATATATCC
66 CGAGATCATATAACC
* * * **
60841792 GGGCTAAGACCCGAGGGCCTTTGTGCAAGTT-ACCAAATCCGGTTTAAGACCCGAAGGCAATCGT
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGA-CAAATCCGGGCTAAGACCCGAAGGCAATCGT
60841856 GCGA-ATCACTATAACC
65 GCGAGATCA-TATAACC
* *
60841872 GGGCTAGGTCCCGAAG
1 GGGCTAAGACCCGAAG
60841888 ACAATCGAGC
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.04
80 76 0.96
ACGTcount: A:0.26, C:0.25, G:0.29, T:0.20
Consensus pattern (80 bp):
GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGACAAATCCGGGCTAAGACCCGAAGGCAATCGTG
CGAGATCATATAACC
Found at i:60844815 original size:27 final size:27
Alignment explanation
Indices: 60844792--60845051 Score: 304
Period size: 27 Copynumber: 9.6 Consensus size: 27
60844782 TAAGTTTACG
* **
60844792 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
60844819 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * * *
60844846 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
60844873 AAATCACCAAAATAACCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
60844900 AAATTACCAAAATACACCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* *
60844927 AAATTATCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
60844954 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
60844981 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * * *
60845008 AAATTACGAAAATGCCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTA
*
60845035 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
60845052 TCGACTTGTA
Statistics
Matches: 200, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 200 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:60844907 original size:81 final size:82
Alignment explanation
Indices: 60844792--60845067 Score: 342
Period size: 81 Copynumber: 3.4 Consensus size: 82
60844782 TAAGTTTACG
* ** *
60844792 AAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AG
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTCAA
* *
60844856 AATACCCTTGGTTTATA
66 AATACCCCTAGTTTATA
* * *
60844873 AAATCACCAAAATAACCTTGGTTTGTAAAATTACCAAAATACACCTGGTTTGTAAAATTA-TCAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTCAA
60844937 AATACCCCTAGTTTATA
66 AATACCCCTAGTTTATA
* * * *
60844954 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTAC-GAA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTCAA
* * * *
60845018 AATGCCCCTAATTTGTG
66 AATACCCCTAGTTTATA
* * **
60845035 AAATTACTAAAATACCCTCGACTTGTAAAATTA
1 AAATTACCAAAATACCCTTGGTTTGTAAAATTA
60845068 TTGAAATACC
Statistics
Matches: 168, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
80 1 0.01
81 167 0.99
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (82 bp):
AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTCAA
AATACCCCTAGTTTATA
Found at i:60845060 original size:27 final size:27
Alignment explanation
Indices: 60844818--60845104 Score: 131
Period size: 27 Copynumber: 10.6 Consensus size: 27
60844808 CTTAGTTTAC
* **
60844818 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GACTTGT
* * ** *
60844845 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACTAAAATACCCTCGACTTGT
* * * * **
60844872 AAAATCACCAAAATAACCTTGGTTTGT
1 AAAATTACTAAAATACCCTCGACTTGT
* **
60844899 AAAATTACCAAAATACACCT-GGTTTGT
1 AAAATTACTAAAATAC-CCTCGACTTGT
* * *
60844926 AAAATTA-TCAAAATACCC-CTAGTTTAT
1 AAAATTACT-AAAATACCCTCGA-CTTGT
* **
60844953 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTACTAAAATACCCTC-GACTTGT
* *
60844980 AAAATTA-TCAAAATACCC-CTAGTTTGT
1 AAAATTACT-AAAATACCCTCGA-CTTGT
* * * *
60845007 AAAATTACGAAAATGCCC-CTAATTTGT
1 AAAATTACTAAAATACCCTC-GACTTGT
*
60845034 GAAATTACTAAAATACCCTCGACTTGT
1 AAAATTACTAAAATACCCTCGACTTGT
* * *
60845061 AAAATTATTGAAATACCCTCGACTTGC
1 AAAATTACTAAAATACCCTCGACTTGT
* *
60845088 AAAATTACCAAAGTACC
1 AAAATTACTAAAATACC
60845105 TTGATTTATA
Statistics
Matches: 210, Mismatches: 38, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
26 2 0.01
27 203 0.97
28 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGACTTGT
Found at i:60845092 original size:81 final size:80
Alignment explanation
Indices: 60844792--60845122 Score: 217
Period size: 81 Copynumber: 4.1 Consensus size: 80
60844782 TAAGTTTACG
* * * * *
60844792 AAATTACCAAAATA-CCCTTAGTT-TACAAAATTACCAAAATACCCCTG-GTTTGTAAAATTACT
1 AAATTACCAAAATACCCCTGACTTGT--AAAATTATCAAAATACCCC-GAGCTTGCAAAATTAC-
* * **
60844854 AGAATACCCTTGGTTTATA
62 AAAATACCCCTAATTTATA
* * * ** * * * *
60844873 AAATCACCAAAATAACCTTGGTTTGTAAAATTACCAAAATACACCTG-GTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGACTTGTAAAATTATCAAAATAC-CCCGAGCTTGCAAAATTA-CAA
*
60844937 AATACCCCTAGTTTATA
64 AATACCCCTAATTTATA
** * * *
60844954 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACGAAA
1 AAATTACCAAAATACCCCTGACTTGTAAAATTATCAAAATACCCCGAGCTTGCAAAATTAC-AAA
* * *
60845019 ATGCCCCTAATTTGTG
65 ATACCCCTAATTTATA
* **
60845035 AAATTACTAAAATA-CCCTCGACTTGTAAAATTATTGAAATACCCTCGA-CTTGCAAAATTACCA
1 AAATTACCAAAATACCCCT-GACTTGTAAAATTATCAAAATACCC-CGAGCTTGCAAAATTA-CA
* * *
60845098 AAGTA-CCTTGATTTATA
63 AAATACCCCTAATTTATA
*
60845115 GAATTACC
1 AAATTACC
60845123 GTTTTACCCT
Statistics
Matches: 206, Mismatches: 35, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
80 21 0.10
81 173 0.84
82 11 0.05
83 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGACTTGTAAAATTATCAAAATACCCCGAGCTTGCAAAATTACAAAA
TACCCCTAATTTATA
Found at i:60845173 original size:27 final size:27
Alignment explanation
Indices: 60845151--60845581 Score: 558
Period size: 27 Copynumber: 16.0 Consensus size: 27
60845141 AAAATTATTA
*
60845151 AAATACCCCTGTAAGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
60845178 CAATACCCTTGTAAGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
60845205 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
60845232 AAATACCCTTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
60845259 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
60845286 AAATACCCCTGTAGGGTAGAATTAGCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
60845313 AAATACCCTTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
60845340 AAATACCCTTGTAGGGTAGAAATT-TCG
1 AAATACCCCTGTAGGGTAG-AATTACCG
* *
60845367 AAATACCCCTGTAGGATAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
60845394 AAATACCCCTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
**
60845421 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
60845448 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
60845475 AAATACCCTTGTAAGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
60845502 AAATATCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
60845529 AAATACCCCTGTATGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * *
60845556 AGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
60845582 ATTTTACCCC
Statistics
Matches: 357, Mismatches: 45, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 3 0.01
27 350 0.98
28 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:60845945 original size:26 final size:27
Alignment explanation
Indices: 60845916--60845975 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
60845906 CCACATATAT
*
60845916 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
60845942 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
60845969 ATATCTG
1 ATATCTG
60845976 GCAGTCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:60846125 original size:6 final size:6
Alignment explanation
Indices: 60846094--60846156 Score: 67
Period size: 6 Copynumber: 10.3 Consensus size: 6
60846084 TTGCATTCAC
* *
60846094 ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
60846143 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
60846157 AATGTTTCTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
5 2 0.04
6 41 0.85
7 4 0.08
8 1 0.02
ACGTcount: A:0.17, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:60847172 original size:30 final size:30
Alignment explanation
Indices: 60847138--60847199 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
60847128 AAGTTCTAGT
*
60847138 TGAAGTGTGATAGTGATAATAGTATCAGAG
1 TGAAGTGTGATAGTGATAATAGGATCAGAG
*
60847168 TGAAGTGTGATAGTGATAGTAGGATCAGAG
1 TGAAGTGTGATAGTGATAATAGGATCAGAG
60847198 TG
1 TG
60847200 CGCAGTGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.34, T:0.29
Consensus pattern (30 bp):
TGAAGTGTGATAGTGATAATAGGATCAGAG
Found at i:60848153 original size:27 final size:27
Alignment explanation
Indices: 60848123--60848391 Score: 331
Period size: 27 Copynumber: 10.0 Consensus size: 27
60848113 TAGAATACTT
* * *
60848123 TAGTTTATGAAATTACCAAAATACCCT
1 TAGTTTGTAAAATTACCAAAATACCCC
**
60848150 TAGTTTACAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* * * *
60848177 TGGTTTGTAAAATTACTAGAATACCCT
1 TAGTTTGTAAAATTACCAAAATACCCC
* * * *
60848204 TGGTTTATGAAATCACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
60848231 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* * *
60848258 TGGTTTGTAAAATTATCAAAATAGCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
60848285 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* * *
60848312 TGGTTTGTAAAATTATCAAAATACCTC
1 TAGTTTGTAAAATTACCAAAATACCCC
60848339 TAGTTTGTAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCC
* * **
60848366 TAATTTGTGAAATTACTGAAATACCC
1 TAGTTTGTAAAATTACCAAAATACCC
60848392 TCGACTTGTA
Statistics
Matches: 207, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 207 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
TAGTTTGTAAAATTACCAAAATACCCC
Found at i:60848373 original size:54 final size:54
Alignment explanation
Indices: 60848123--60848444 Score: 340
Period size: 54 Copynumber: 6.0 Consensus size: 54
60848113 TAGAATACTT
* * * * **
60848123 TAGTTTATGAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
* * * * * * *
60848177 TGGTTTGTAAAATTACTAGAATACCCTTGGTTTATGAAATCACCAAAATACCCC
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
* *
60848231 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATAGCCC
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
* *
60848285 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCTC
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
** * **
60848339 TAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATA-CCC
1 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
* * *** * ** * *
60848392 TCGACTTGTAAAATTATTGAAATACCCTTGACTTGTATAATTACCAAAGTACC
1 TAG-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC
60848445 ATTGATTTAT
Statistics
Matches: 226, Mismatches: 40, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
53 4 0.02
54 221 0.98
55 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCC
Found at i:60848401 original size:81 final size:80
Alignment explanation
Indices: 60848123--60848444 Score: 329
Period size: 81 Copynumber: 4.0 Consensus size: 80
60848113 TAGAATACTT
* ** **
60848123 TAGTTTATGAAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAA
1 TAGTTTGTGAAATTACCAAAATACCCCGA-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAA
* * *
60848188 ATTACTAGAATACCCT
65 ATTACCAAAATACCCC
* * * *
60848204 TGGTTTATGAAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAA
1 TAGTTTGTGAAATTACCAAAATACCCCGA-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAA
* *
60848269 ATTATCAAAATAGCCC
65 ATTACCAAAATACCCC
* * * * *
60848285 TAGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCTCTAGTTTGTAAA
1 TAGTTTGTGAAATTACCAAAATACCCC-GATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAA
60848350 ATTACCAAAATACCCC
65 ATTACCAAAATACCCC
* ** * *** * ** *
60848366 TAATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTATTGAAATACCCTTGACTTGTATA
1 TAGTTTGTGAAATTACCAAAATACCC-CGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAA
*
60848431 ATTACCAAAGTACC
65 ATTACCAAAATACC
60848445 ATTGATTTAT
Statistics
Matches: 203, Mismatches: 36, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
81 202 1.00
82 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (80 bp):
TAGTTTGTGAAATTACCAAAATACCCCGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAA
TTACCAAAATACCCC
Found at i:60848444 original size:27 final size:27
Alignment explanation
Indices: 60848132--60848463 Score: 285
Period size: 27 Copynumber: 12.3 Consensus size: 27
60848122 TTAGTTTATG
**
60848132 AAATTACCAAAATACCCTT-AGTTTACA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
60848159 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * * * *
60848186 AAATTACTAGAATACCCTTGGTTTATG
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60848213 AAATCACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* *
60848240 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60848267 AAATTATCAAAATAGCCCTAG-TTTGTA
1 AAATTACCAAAATA-CCCTTGATTTGTA
* *
60848294 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* *
60848321 AAATTATCAAAATACCTCTAG-TTTGTA
1 AAATTACCAAAATACC-CTTGATTTGTA
* * *
60848348 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
** * *
60848375 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*** *
60848402 AAATTATTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* * * *
60848429 TAATTACCAAAGTACCATTGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
*
60848456 GAATTACC
1 AAATTACC
60848464 GTTTTACCCT
Statistics
Matches: 248, Mismatches: 50, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
26 5 0.02
27 237 0.96
28 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:60848514 original size:27 final size:27
Alignment explanation
Indices: 60848491--60848914 Score: 539
Period size: 27 Copynumber: 15.7 Consensus size: 27
60848481 CAAAATTATT
*
60848491 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60848518 GAAATACCCTTGTAGGGTAGGAA-TACC
1 GAAATACCCCTGTAGGGTA-GAATTACC
*
60848545 GAAATACCCTTGTAGGGTAGGAA-TACC
1 GAAATACCCCTGTAGGGTA-GAATTACC
* * * *
60848572 GAAATACCCTTGTACGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60848599 GAAATACCCTTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
60848626 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60848653 GAAATACCTCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60848680 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60848707 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60848734 GAAATACCCTTGTAGGATAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60848761 GAAATACCCCTGTAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60848788 GAAATACCCCTTTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60848815 AAAATACCCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60848842 GAAATACCCTTGTAAGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60848869 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
60848896 GAAATA-CCCTGTAGAGTAG
1 GAAATACCCCTGTAGGGTAG
60848915 TGTGACAGCC
Statistics
Matches: 357, Mismatches: 38, Indels: 5
0.89 0.09 0.01
Matches are distributed among these distances:
26 15 0.04
27 339 0.95
28 3 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:60850622 original size:40 final size:40
Alignment explanation
Indices: 60850563--60850709 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
60850553 CATTGGAATG
* * *
60850563 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTATT
* * *
60850603 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCAAGTTATT
* * **
60850643 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTATT
* *
60850683 AAATCCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
60850710 CGTGCGAATC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.03
40 86 0.95
41 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTATT
Found at i:60850665 original size:80 final size:80
Alignment explanation
Indices: 60850563--60850716 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
60850553 CATTGGAATG
* * ** *
60850563 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
60850628 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
60850643 ATATCCGGGCTAAGACCCGAAGGCATTTTTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
60850708 ATCGTGCGA
66 ATCGTGCGA
60850717 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:60850731 original size:40 final size:40
Alignment explanation
Indices: 60850563--60850770 Score: 166
Period size: 40 Copynumber: 5.2 Consensus size: 40
60850553 CATTGGAATG
* ** * * * *
60850563 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * ***
60850603 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* ** * *
60850643 ATATCCGGGCTAAGACCCGAAGGCATTTTTGC-AAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAA-TCACT
* *
60850683 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
* * * * * * *
60850723 ATAACCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
60850763 ATATCCGG
1 ATATCCGG
60850771 TTAAATCCCG
Statistics
Matches: 136, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 133 0.98
41 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATCGTGCGAATCACT
Found at i:60850731 original size:80 final size:80
Alignment explanation
Indices: 60850567--60850749 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
60850557 GGAATGATAT
* ** * *
60850567 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
60850632 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
60850647 CCGGGCTAAGACCCGAAGGCATTTTTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
60850712 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
60850727 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
60850750 CGAGCGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:60852555 original size:26 final size:27
Alignment explanation
Indices: 60852526--60852585 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
60852516 CCACATATAT
*
60852526 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
60852552 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
60852579 ATATCTG
1 ATATCTG
60852586 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:60854912 original size:24 final size:24
Alignment explanation
Indices: 60854882--60855148 Score: 489
Period size: 24 Copynumber: 11.1 Consensus size: 24
60854872 GAATGTGACT
* *
60854882 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
60854906 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60854930 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60854954 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60854978 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
60855002 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60855026 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60855050 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60855074 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60855098 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
60855122 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60855146 ATA
1 ATA
60855149 TGGTCTTTGC
Statistics
Matches: 238, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 238 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:60860709 original size:24 final size:24
Alignment explanation
Indices: 60860679--60860945 Score: 480
Period size: 24 Copynumber: 11.1 Consensus size: 24
60860669 GAATGTGACT
* *
60860679 ATAGCAAATCGCACACATAGTGCT
1 ATAGTAAATCGCACACATAGTGCC
*
60860703 ATAGCAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860727 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860751 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860775 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
**
60860799 ATAGTGTATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860823 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860847 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860871 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860895 ATAGTAAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
*
60860919 ATAGTGAATCGCACACATAGTGCC
1 ATAGTAAATCGCACACATAGTGCC
60860943 ATA
1 ATA
60860946 TGGTCTTTGC
Statistics
Matches: 236, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 236 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
ATAGTAAATCGCACACATAGTGCC
Found at i:60864331 original size:27 final size:26
Alignment explanation
Indices: 60864283--60864342 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
60864273 GCGAGGCTGC
*
60864283 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
60864310 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
60864336 CAGATAT
1 CAGATAT
60864343 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:60864355 original size:33 final size:32
Alignment explanation
Indices: 60864304--60864367 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
60864294 ACGAAGTCAC
* *
60864304 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
60864336 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
60864368 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:60864993 original size:27 final size:27
Alignment explanation
Indices: 60864963--60865025 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
60864953 ATAATCATTT
*
60864963 TACCCTCCAGGGGTAAATCGGTAGTCC
1 TACCCTACAGGGGTAAATCGGTAGTCC
* ** * *
60864990 TACCCTACATGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTAAATCGGTAGTCC
60865017 TACCCTACA
1 TACCCTACA
60865026 ATGGTATTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (27 bp):
TACCCTACAGGGGTAAATCGGTAGTCC
Found at i:60865031 original size:27 final size:27
Alignment explanation
Indices: 60864980--60865035 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
60864970 CAGGGGTAAA
60864980 TCGGTAGTCCTACCCTACATGGGTATT
1 TCGGTAGTCCTACCCTACATGGGTATT
* *
60865007 TCGGTATTTCTACCCTACAAT-GGTATT
1 TCGGTAGTCCTACCCTAC-ATGGGTATT
60865034 TC
1 TC
60865036 TATAATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.38
Consensus pattern (27 bp):
TCGGTAGTCCTACCCTACATGGGTATT
Done.