Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 198 of 318
Found at i:62080808 original size:16 final size:17
Alignment explanation
Indices: 62080787--62080823 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
62080777 AATATTAATG
62080787 TTATTATT-ATTATTA-A
1 TTATTATTGA-TATTATA
62080803 TTATTATTGATATTATA
1 TTATTATTGATATTATA
62080820 TTAT
1 TTAT
62080824 GAAATAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATTATTGATATTATA
Found at i:62082616 original size:19 final size:19
Alignment explanation
Indices: 62082594--62082643 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
62082584 AGATCGACTA
62082594 TTACTGAATAATTTAATTG
1 TTACTGAATAATTTAATTG
* * * *
62082613 TTACTGTAT-ATCTGATTT
1 TTACTGAATAATTTAATTG
62082631 TTACTGAATAATT
1 TTACTGAATAATT
62082644 GACTATTATT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.08, G:0.10, T:0.50
Consensus pattern (19 bp):
TTACTGAATAATTTAATTG
Found at i:62082700 original size:18 final size:18
Alignment explanation
Indices: 62082679--62082739 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
62082669 TGATTGATAC
62082679 TGAATAACTGATTATTAT
1 TGAATAACTGATTATTAT
* ** *
62082697 TGAATAATTGATTGGTAA
1 TGAATAACTGATTATTAT
*
62082715 TGAATAACTGACTATTAT
1 TGAATAACTGATTATTAT
62082733 TGAATAA
1 TGAATAA
62082740 ATAATTGTTC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (18 bp):
TGAATAACTGATTATTAT
Found at i:62082719 original size:36 final size:36
Alignment explanation
Indices: 62082666--62082739 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
62082656 ATAACCGATC
* *
62082666 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGATAATGAATAACTGACTATTATTGAAT
*
62082702 AATTGATTGGTAATGAATAACTGACTATTATTGAAT
1 AATTGATTGATAATGAATAACTGACTATTATTGAAT
62082738 AA
1 AA
62082740 ATAATTGTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.39
Consensus pattern (36 bp):
AATTGATTGATAATGAATAACTGACTATTATTGAAT
Found at i:62087695 original size:18 final size:18
Alignment explanation
Indices: 62087653--62087695 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
62087643 AAAGAGTTGA
62087653 AAGTTAGTGGGTTAGTGG
1 AAGTTAGTGGGTTAGTGG
* *
62087671 GATTTAGT-GGTTAGTGG
1 AAGTTAGTGGGTTAGTGG
62087688 AAGGTTAG
1 AA-GTTAG
62087696 GATAGATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (18 bp):
AAGTTAGTGGGTTAGTGG
Found at i:62090420 original size:8 final size:9
Alignment explanation
Indices: 62090390--62090512 Score: 59
Period size: 10 Copynumber: 12.7 Consensus size: 9
62090380 ACAAAAAGAA
*
62090390 TTTATGATT
1 TTTATAATT
62090399 TTTATAATTT
1 TTTATAA-TT
*
62090409 TTTTTATATT
1 TTTATA-ATT
*
62090419 TTTATCATT
1 TTTATAATT
*
62090428 TTAATAAATT
1 TTTAT-AATT
62090438 TTATATAATT
1 TT-TATAATT
**
62090448 TTCTATGACCT
1 TT-TAT-AATT
*
62090459 TTTATAGTAT
1 TTTATAAT-T
*
62090469 TTTATATTT
1 TTTATAATT
*
62090478 TTTAAAATAT
1 TTTATAAT-T
*
62090488 TTCCATAA-T
1 TT-TATAATT
62090497 TTTATAATAT
1 TTTATAAT-T
62090507 TTTATA
1 TTTATA
62090513 TAATTTCTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
8 4 0.05
9 24 0.28
10 48 0.56
11 10 0.12
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTATAATT
Found at i:62090448 original size:29 final size:29
Alignment explanation
Indices: 62090390--62090481 Score: 73
Period size: 29 Copynumber: 3.1 Consensus size: 29
62090380 ACAAAAAGAA
* * * *
62090390 TTTATGATTTTTATAATTTTTTTTATATT
1 TTTATCATTTTAATAATATTTTATATATT
62090419 TTTATCATTTTAATAA-ATTTTATATAATT
1 TTTATCATTTTAATAATATTTTATAT-ATT
* *
62090448 TTCTATGACCTTTT-ATAGTATTTTATAT-TT
1 TT-TAT--CATTTTAATAATATTTTATATATT
62090478 TTTA
1 TTTA
62090482 AAATATTTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
28 7 0.13
29 21 0.40
30 7 0.13
31 3 0.06
32 14 0.27
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.64
Consensus pattern (29 bp):
TTTATCATTTTAATAATATTTTATATATT
Found at i:62090488 original size:19 final size:19
Alignment explanation
Indices: 62090466--62090525 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
62090456 CCTTTTATAG
*
62090466 TATTTTATATTTTTTAAAA
1 TATTTTATATATTTTAAAA
* *
62090485 TATTTCCATA-ATTTTATAA
1 TATTT-TATATATTTTAAAA
62090504 TATTTTATATAATTTCTAAAA
1 TATTTTATAT-ATTT-TAAAA
62090525 T
1 T
62090526 GTTAATATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 3 0.09
19 17 0.53
20 7 0.22
21 5 0.16
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTTATATATTTTAAAA
Found at i:62090515 original size:20 final size:20
Alignment explanation
Indices: 62090398--62090518 Score: 72
Period size: 19 Copynumber: 6.2 Consensus size: 20
62090388 AATTTATGAT
* * *
62090398 TTTTATAATTTTTTTTATAT
1 TTTTATAATATTTTATATAA
* *
62090418 TTTTATCAT-TTTAATA-AA
1 TTTTATAATATTTTATATAA
* *
62090436 TTTTAT-ATAATTTTCTATGACC
1 TTTTATAAT-ATTTTATAT-A-A
* *
62090458 TTTTATAGTATTTTATAT-T
1 TTTTATAATATTTTATATAA
* **
62090477 TTTTAAAATA-TTTCCATAA
1 TTTTATAATATTTTATATAA
62090496 TTTTATAATATTTTATATAA
1 TTTTATAATATTTTATATAA
62090516 TTT
1 TTT
62090519 CTAAAATGTT
Statistics
Matches: 75, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
17 2 0.03
18 12 0.16
19 27 0.36
20 18 0.24
21 1 0.01
22 14 0.19
23 1 0.01
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTATAATATTTTATATAA
Found at i:62091294 original size:125 final size:126
Alignment explanation
Indices: 62091072--62091631 Score: 712
Period size: 117 Copynumber: 4.5 Consensus size: 126
62091062 TAATTAAATT
*
62091072 AGGATGCACTTTCAGCAAAATTACTG-AAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAGT
* * * * *
62091136 ATCTAAAAAAATAATTTTAAGAAGACATTTCTGAACAAATAATGTCGAAAACGCTTTAAGC
66 ATCTAAAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCTTCAAGC
**
62091197 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTTTT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAGT
* * *
62091262 ATCT-AAAAAATAATTTTGAGGAGACATTTCTGAAAAAATAGTGTCCAAAATGCTTCAAGT
66 ATCTAAAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCTTCAAGC
* * * * *
62091322 AGGATACACTGTCAGCAAAATTACTAAAAAAAAAGCTTCCACATGGACGCTCTTTTGCTTCAGTA
1 AGGATGCACTGTCAGCAAAATTACT--GAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTA
* ** *
62091387 GTATTTGGAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCGTCAAGC
64 GTATCTAAAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCTTCAAGC
* * * *
62091450 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGGTCCCACGTGGACGCTCTTTTGCTACAATAGT
1 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAGT
* ** *
62091515 A--T-------TAATTTCGAGAAGATGTTTCTGAATAAATAGTGTCCAAAACGCTTCAAGC
66 ATCTAAAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCTTCAAGC
* ** * *
62091567 AGGATGTACTGTCAATAAAATTAC-GAAAAAAAGCTCCCACATGGATGCTCTTTTGCTACAGTAG
1 AGGATGCACTGTCAGCAAAATTACTG-AAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAG
62091631 T
65 T
62091632 TCCTATTTGT
Statistics
Matches: 387, Mismatches: 43, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
116 1 0.00
117 101 0.26
124 1 0.00
125 97 0.25
126 75 0.19
127 37 0.10
128 75 0.19
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (126 bp):
AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTCCACGTGGATGCTCTTTTGCTACAGTAGT
ATCTAAAAAAATAATTTTGAGAAGACATTTCTGAAAAAATAGTGTCCAAAACGCTTCAAGC
Found at i:62092957 original size:18 final size:18
Alignment explanation
Indices: 62092934--62092969 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
62092924 TTAGGGTTTT
62092934 TGAATAAAATTTTTATCA
1 TGAATAAAATTTTTATCA
62092952 TGAATAAAATTTTTATCA
1 TGAATAAAATTTTTATCA
62092970 CGTAATGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (18 bp):
TGAATAAAATTTTTATCA
Found at i:62094950 original size:21 final size:21
Alignment explanation
Indices: 62094925--62094977 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
62094915 TGGTTCACCT
* *
62094925 TCCGGCGGGGGTTGTGGTTGC
1 TCCGGCAGGGGTTGTGGTTCC
*
62094946 TCCGGCAGGGATTGTGGTTCC
1 TCCGGCAGGGGTTGTGGTTCC
62094967 TCCGGCAGGGG
1 TCCGGCAGGGG
62094978 ATCTGGTAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.23, G:0.47, T:0.25
Consensus pattern (21 bp):
TCCGGCAGGGGTTGTGGTTCC
Found at i:62094984 original size:21 final size:21
Alignment explanation
Indices: 62094925--62094984 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
62094915 TGGTTCACCT
* * *
62094925 TCCGGCGGGGGTTGTGGTTGC
1 TCCGGCAGGGGATGTGGTTCC
62094946 TCCGGCA-GGGATTGTGGTTCC
1 TCCGGCAGGGGA-TGTGGTTCC
*
62094967 TCCGGCAGGGGATCTGGT
1 TCCGGCAGGGGATGTGGT
62094985 AGTGGGTGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 3 0.09
21 26 0.79
22 4 0.12
ACGTcount: A:0.07, C:0.22, G:0.45, T:0.27
Consensus pattern (21 bp):
TCCGGCAGGGGATGTGGTTCC
Found at i:62096297 original size:48 final size:48
Alignment explanation
Indices: 62096219--62096490 Score: 257
Period size: 48 Copynumber: 5.7 Consensus size: 48
62096209 TTATTTATGG
* *
62096219 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAATATATAA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATATAA
* * *
62096267 G-TCAGTTTAAGACCATATTTGGAACATGGCATCGACATTC-TTATGA-AA
1 GCT-AGTGTAAGACCATGTTTGGAACATGGCATCGACA-TCAATAT-ATAA
* * * * *
62096315 GCTAGTGTAAGACCATGTATGGGACATGGCATC-AGCCTCAATATCTGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGA-CATCAATATATAA
* * * * * * *
62096363 GCTACTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGTGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATATAA
* * ***
62096411 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATA-AGA
1 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATATA-A
*
62096459 GCTAGTGTAAGACCATGTTTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTTTGGAACATGGCAT
62096491 TGGCACCGAT
Statistics
Matches: 185, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
47 4 0.02
48 177 0.96
49 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATCAATATATAA
Found at i:62096384 original size:96 final size:95
Alignment explanation
Indices: 62096219--62096490 Score: 321
Period size: 96 Copynumber: 2.8 Consensus size: 95
62096209 TTATTTATGG
* * *
62096219 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAATATATAAG-TCAGTTTAAGACCAT
1 GCTAGTGTAAGACCATGTATGGGACATGGCATCG-CATCAATATATGAGCT-AGTGTAAGACCAT
* *
62096283 ATTTGGAACATGGCATCGACATTCTTATGAAA
64 GTTTGGAACATGGCATCGACATTATTATGAAA
* * *
62096315 GCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCTCAATATCTGAGCTACTGTAAGACCATG
1 GCTAGTGTAAGACCATGTATGGGACATGGCATC-GCATCAATATATGAGCTAGTGTAAGACCATG
* * **
62096380 TTTGGAACATAGCATCGGCATTATTATGTGA
65 TTTGGAACATGGCATCGACATTATTATGAAA
* * * *** *
62096411 GCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATAAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTATGGGACATGGCATC-GCATCAATATATGAGCTAGTGTAAGACCATG
*
62096476 TTTGGGACATGGCAT
65 TTTGGAACATGGCAT
62096491 TGGCACCGAT
Statistics
Matches: 149, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
96 147 0.99
97 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTATGGGACATGGCATCGCATCAATATATGAGCTAGTGTAAGACCATGT
TTGGAACATGGCATCGACATTATTATGAAA
Found at i:62096484 original size:144 final size:144
Alignment explanation
Indices: 62096219--62096490 Score: 393
Period size: 144 Copynumber: 1.9 Consensus size: 144
62096209 TTATTTATGG
* * * * *
62096219 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCAATATATAAGTCAGTTTAAGACCATA
1 GCTACTGTAAGACCATGTCTGGAACATAGCATCGACATCAATATATAAGCCAGTGTAAGACCATA
62096284 TTTGGAACATGGCATCGACATTCTTATGAAAGCTAGTGTAAGACCATGTATGGGACATGGCATCA
66 TTTGGAACATGGCATCGACATTCTTATGAAAGCTAGTGTAAGACCATGTATGGGACATGGCATCA
62096349 GCCTCAATATCTGA
131 GCCTCAATATCTGA
* * * * * * *
62096363 GCTACTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGTGAGCCAGTGTAAGACCATG
1 GCTACTGTAAGACCATGTCTGGAACATAGCATCGACATCAATATATAAGCCAGTGTAAGACCATA
* * *
62096428 TTTGGAACATGGCATCGGCATTGTTAT-AAGAGCTAGTGTAAGACCATGTTTGGGACATGGCAT
66 TTTGGAACATGGCATCGACATTCTTATGAA-AGCTAGTGTAAGACCATGTATGGGACATGGCAT
62096491 TGGCACCGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
143 2 0.02
144 110 0.98
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (144 bp):
GCTACTGTAAGACCATGTCTGGAACATAGCATCGACATCAATATATAAGCCAGTGTAAGACCATA
TTTGGAACATGGCATCGACATTCTTATGAAAGCTAGTGTAAGACCATGTATGGGACATGGCATCA
GCCTCAATATCTGA
Found at i:62096539 original size:98 final size:96
Alignment explanation
Indices: 62096361--62096543 Score: 224
Period size: 96 Copynumber: 1.9 Consensus size: 96
62096351 CTCAATATCT
** * * *
62096361 GAGCTACTGTAAGACCATGTTTGGAACATAGCATCGGCATTATTATGTGAGCCAGTGTAAGACCA
1 GAGCTACTGTAAGACCATGTTTGGAACATAGCATCGGCACGATCATGAGAGCCAATGTAAGACCA
* *
62096426 TGTTTGGAACATGGCATCGGCATTGTTATAA
66 TGCTAGGAACATGGCATCGGCATTGTTATAA
* * * *
62096457 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCACCGATACATGAGAGCCAATGTAAGAC
1 GAGCTACTGTAAGACCATGTTTGGAACATAGCATCGGCA-CGAT-CATGAGAGCCAATGTAAGAC
*
62096522 CATGCCTAGG-ATATGGCATCGG
64 CATG-CTAGGAACATGGCATCGG
62096544 TATTTTACCC
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
96 35 0.49
97 2 0.03
98 32 0.44
99 3 0.04
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (96 bp):
GAGCTACTGTAAGACCATGTTTGGAACATAGCATCGGCACGATCATGAGAGCCAATGTAAGACCA
TGCTAGGAACATGGCATCGGCATTGTTATAA
Found at i:62100730 original size:28 final size:28
Alignment explanation
Indices: 62100683--62100736 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
62100673 CACGAGCTGA
62100683 GACACGGGCGTGTCATGGCCGTGTGAGG
1 GACACGGGCGTGTCATGGCCGTGTGAGG
62100711 GACAC-GGCGTGTGCCA-GGCCGTGTGA
1 GACACGGGCGTGT--CATGGCCGTGTGA
62100737 AAACCCCTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 7 0.29
28 15 0.62
29 2 0.08
ACGTcount: A:0.15, C:0.24, G:0.44, T:0.17
Consensus pattern (28 bp):
GACACGGGCGTGTCATGGCCGTGTGAGG
Found at i:62101351 original size:15 final size:15
Alignment explanation
Indices: 62101327--62101362 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
62101317 CTGAAGAGAC
62101327 TGCGCCAGTTGAAAG
1 TGCGCCAGTTGAAAG
*
62101342 TGCGCTAGTTGAAAG
1 TGCGCCAGTTGAAAG
62101357 TGCGCC
1 TGCGCC
62101363 CGTGACACTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.22
Consensus pattern (15 bp):
TGCGCCAGTTGAAAG
Found at i:62107184 original size:48 final size:48
Alignment explanation
Indices: 62107068--62107492 Score: 404
Period size: 48 Copynumber: 8.8 Consensus size: 48
62107058 TAGGGTTATT
* *
62107068 TGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* * * * * * * * ***
62107116 TGTGAGCCAATGTAAAACCATGTTTTGAACATAGCATTGGCATTGTTA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* *
62107164 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATAGGCCTCAATA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* *
62107212 TGTGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* * * *
62107260 TGTGAGCTAGTGCAAGACCATATTTTGGACATAGCATCGGCCTCAATA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* * * * ***
62107308 TGTGAAG-TAGTGTAAGAACATGTTTGGAACATGGCATTGGCATTGTTA
1 TGTG-AGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* ** * *
62107356 TGAGAGCTAGTGTAAGACCATGACTAGGACATGGCATCGGCCTCTATA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
* * * * * * *
62107404 TGTAAGCCAGTGTAAGACCATGTCTGGAACATGGCAT-TGACACAGATACA
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCA-AT--A
* * * *
62107454 TGTGAGCCAGTTTAAGACCATGTCTAGGACATGGCATCG
1 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
62107493 ACATTTTACC
Statistics
Matches: 301, Mismatches: 70, Indels: 9
0.79 0.18 0.02
Matches are distributed among these distances:
47 5 0.02
48 260 0.86
49 2 0.01
50 34 0.11
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
Found at i:62107267 original size:96 final size:96
Alignment explanation
Indices: 62107068--62107492 Score: 467
Period size: 96 Copynumber: 4.4 Consensus size: 96
62107058 TAGGGTTATT
* * * *
62107068 TGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAATGTAAAA
1 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
* * * ***
62107133 CCATGTTTTGAACATAGCATTGGCATTGTTA
66 CCATGTCTGGAACATGGCATTGGCATCAATA
* * * * * *
62107164 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATAGGCCTCAATATGTGAGCTAGTGCAAGA
1 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
* * *
62107229 CCATGTCTGGGACATGGCATCGGCCTCAATA
66 CCATGTCTGGAACATGGCATTGGCATCAATA
* * * * * *
62107260 TGTGAGCTAGTGCAAGACCATATTTTGGACATAGCATCGGCCTCAATATGTGAAG-TAGTGTAAG
1 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTG-AGCCAGTGTAAG
* * ***
62107324 AACATGTTTGGAACATGGCATTGGCATTGTTA
65 ACCATGTCTGGAACATGGCATTGGCATCAATA
* * * *
62107356 TGAGAGCTAGTGTAAGACCATGACTAGGACATGGCATCGGCCTCTATATGTAAGCCAGTGTAAGA
1 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
*
62107421 CCATGTCTGGAACATGGCATTGACA-CAGATACA
66 CCATGTCTGGAACATGGCATTGGCATCA-AT--A
* *
62107454 TGTGAGCCAGTTTAAGACCATGTCTAGGACATGGCATCG
1 TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
62107493 ACATTTTACC
Statistics
Matches: 272, Mismatches: 52, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
95 2 0.01
96 232 0.85
97 2 0.01
98 36 0.13
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (96 bp):
TGTGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
CCATGTCTGGAACATGGCATTGGCATCAATA
Found at i:62107333 original size:144 final size:144
Alignment explanation
Indices: 62107068--62107424 Score: 464
Period size: 144 Copynumber: 2.5 Consensus size: 144
62107058 TAGGGTTATT
* * *
62107068 TGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAATGTAAAA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
* * *** * *
62107133 CCATGTTTTGAACATAGCATTGGCATTGTTATGAGAGCTAGTGTAAGACCATGTTTGGGACATGG
66 CCATATTTTGAACATAGCATCGGCATCAATATGAGAGCTAGTGTAAGAACATGTTTGGAACATGG
*
62107198 CATAGGCCTCAATA
131 CATAGGCATCAATA
* * *
62107212 TGTGAGCTAGTGCAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCTAGTGCAAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
* * *
62107277 CCATATTTTGGACATAGCATCGGCCTCAATATGTGAAG-TAGTGTAAGAACATGTTTGGAACATG
66 CCATATTTTGAACATAGCATCGGCATCAATATGAG-AGCTAGTGTAAGAACATGTTTGGAACATG
* ***
62107341 GCATTGGCATTGTTA
130 GCATAGGCATCAATA
* * * * *
62107356 TGAGAGCTAGTGTAAGACCATGACTAGGACATGGCATCGGCCTCTATATGTAAGCCAGTGTAAGA
1 TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
62107421 CCAT
66 CCAT
62107425 GTCTGGAACA
Statistics
Matches: 183, Mismatches: 29, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
144 181 0.99
145 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (144 bp):
TGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGA
CCATATTTTGAACATAGCATCGGCATCAATATGAGAGCTAGTGTAAGAACATGTTTGGAACATGG
CATAGGCATCAATA
Found at i:62112109 original size:18 final size:18
Alignment explanation
Indices: 62112088--62112123 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
62112078 AAAAGGAAAT
*
62112088 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
62112106 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
62112124 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:62113900 original size:10 final size:10
Alignment explanation
Indices: 62113885--62113919 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
62113875 TAAAGAGAGC
62113885 TTTGAGAAAA
1 TTTGAGAAAA
62113895 TTTGAGAGAAA
1 TTTGAGA-AAA
*
62113906 TTTGAGAGAA
1 TTTGAGAAAA
62113916 TTTG
1 TTTG
62113920 GAGGGAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (10 bp):
TTTGAGAAAA
Found at i:62113902 original size:21 final size:21
Alignment explanation
Indices: 62113885--62113946 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
62113875 TAAAGAGAGC
62113885 TTTGAGAAAATTTGAGAGAAA
1 TTTGAGAAAATTTGAGAGAAA
* *
62113906 TTTGAGAGAATTTG-GAGGGAA
1 TTTGAGAAAATTTGAGA-GAAA
*
62113927 TTTAGAGAGAATTATGAGAG
1 TTT-GAGAAAATT-TGAGAG
62113947 GACTTTTGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 2 0.06
21 19 0.54
22 9 0.26
23 3 0.09
24 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (21 bp):
TTTGAGAAAATTTGAGAGAAA
Found at i:62113908 original size:11 final size:11
Alignment explanation
Indices: 62113885--62113946 Score: 60
Period size: 11 Copynumber: 5.7 Consensus size: 11
62113875 TAAAGAGAGC
62113885 TTTGAGA-AAA
1 TTTGAGAGAAA
62113895 TTTGAGAGAAA
1 TTTGAGAGAAA
62113906 TTTGAGAG-AA
1 TTTGAGAGAAA
*
62113916 TTTG-GAGGGAA
1 TTTGAGA-GAAA
62113927 TTT-AGAGAGAA
1 TTTGAGAGA-AA
62113938 TTATGAGAG
1 TT-TGAGAG
62113947 GACTTTTGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 11
0.79 0.02 0.20
Matches are distributed among these distances:
9 2 0.05
10 15 0.34
11 22 0.50
12 1 0.02
13 4 0.09
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:62117623 original size:16 final size:15
Alignment explanation
Indices: 62117595--62117629 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
62117585 GTGACCAATA
62117595 AATATTTAAATATAT
1 AATATTTAAATATAT
*
62117610 AATATTATATATATAT
1 AATATT-TAAATATAT
62117626 AATA
1 AATA
62117630 AATTTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATATTTAAATATAT
Found at i:62118841 original size:11 final size:11
Alignment explanation
Indices: 62118827--62118909 Score: 73
Period size: 11 Copynumber: 7.7 Consensus size: 11
62118817 ATATCCAAAT
*
62118827 AATAACAATAA
1 AATAATAATAA
**
62118838 AATAATAGCAA
1 AATAATAATAA
*
62118849 TATAATAATAA
1 AATAATAATAA
62118860 AAT-ATAATAA
1 AATAATAATAA
*
62118870 AATAGAT-AGAA
1 AATA-ATAATAA
*
62118881 AATAATAAGAA
1 AATAATAATAA
*
62118892 AATAATATTAA
1 AATAATAATAA
62118903 AA-AATAA
1 AATAATAA
62118910 AAAGAAAATA
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
10 16 0.28
11 40 0.69
12 2 0.03
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (11 bp):
AATAATAATAA
Found at i:62118842 original size:14 final size:14
Alignment explanation
Indices: 62118823--62118869 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
62118813 TACAATATCC
62118823 AAATAATAACAATA
1 AAATAATAACAATA
*
62118837 AAATAATAGCAATA
1 AAATAATAACAATA
*
62118851 TAATAATAA-AATA
1 AAATAATAACAATA
*
62118864 TAATAA
1 AAATAA
62118870 AATAGATAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 10 0.33
14 20 0.67
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (14 bp):
AAATAATAACAATA
Found at i:62118886 original size:32 final size:33
Alignment explanation
Indices: 62118827--62118908 Score: 98
Period size: 32 Copynumber: 2.5 Consensus size: 33
62118817 ATATCCAAAT
* * *
62118827 AATAACAATAAAATAATAGCAATATAATAATAA
1 AATAATAATAAAATAATAGCAAAATAATAAGAA
62118860 AAT-ATAATAAAATAGATAG-AAAATAATAAGAA
1 AATAATAATAAAATA-ATAGCAAAATAATAAGAA
*
62118892 AATAATATTAAAA-AATA
1 AATAATAATAAAATAATA
62118909 AAAAGAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
31 3 0.07
32 25 0.58
33 15 0.35
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.24
Consensus pattern (33 bp):
AATAATAATAAAATAATAGCAAAATAATAAGAA
Found at i:62126354 original size:41 final size:41
Alignment explanation
Indices: 62126310--62126593 Score: 480
Period size: 41 Copynumber: 6.9 Consensus size: 41
62126300 TTGTAAAACA
* *
62126310 CAGAGCAATAGCGGCGTTTTTGTGAAAAACGCCGCTAAAGA-
1 CAGAGCATTAGCGGCGCTTTTG-GAAAAACGCCGCTAAAGAC
62126351 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
* *
62126392 CAGAGCATTAGCGGCGCTTATGGAAAAACGCCGCTACAGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
* *
62126433 CAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTACAGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
*
62126474 CAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
*
62126515 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGCC
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
62126556 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAA
1 CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAA
62126594 AGTCACATAA
Statistics
Matches: 233, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 18 0.08
41 215 0.92
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCTAAAGAC
Found at i:62126784 original size:21 final size:21
Alignment explanation
Indices: 62126760--62126844 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
62126750 CATTATAGTT
* *
62126760 TATGGTTTATGATTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
62126781 TATGATTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
62126802 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
62126827 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
62126845 GTTTAGGAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 30 0.60
22 2 0.04
24 3 0.06
25 15 0.30
ACGTcount: A:0.29, C:0.01, G:0.25, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:62126824 original size:46 final size:46
Alignment explanation
Indices: 62126767--62126860 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
62126757 GTTTATGGTT
*
62126767 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
* *
62126813 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
62126859 TA
1 TA
62126861 GTATTTGAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
TATGATTTAAGATATATGATTTAGGGTTTAAGGTTTAGGAGTTAAC
Found at i:62128198 original size:93 final size:93
Alignment explanation
Indices: 62128086--62128257 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
62128076 GCCCATAAGT
* *
62128086 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62128151 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
62128179 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62128244 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
62128258 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:62128253 original size:46 final size:46
Alignment explanation
Indices: 62128078--62128253 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
62128068 TGTAACCCGC
* * *
62128078 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
62128124 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
62128174 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
62128217 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62128254 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:62135431 original size:42 final size:43
Alignment explanation
Indices: 62135384--62135556 Score: 179
Period size: 43 Copynumber: 4.1 Consensus size: 43
62135374 AATTTTTTTA
* * *
62135384 AAAGGTCATGGTTTTTAGCGGCGTTTAT-AAAAAAGCGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGCT
* * * * * * *
62135426 AAAGGTTATAGTTTTTAGTGGCATTTTTGAGAAAAGCGTCGCT
1 AAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGCT
* * **
62135469 AAAGATCATGGTCTTTAGCAGCATTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGCT
* * *
62135512 AAAGGTCATGGCCTTTAGCGGCGTTTG-CAAAAAAGCGCCGCT
1 AAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGCT
62135554 AAA
1 AAA
62135557 TTTTGCGGCG
Statistics
Matches: 107, Mismatches: 23, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
42 38 0.36
43 69 0.64
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
AAAGGTCATGGTCTTTAGCGGCATTTGTGAAAAAAGCGCCGCT
Found at i:62136910 original size:18 final size:20
Alignment explanation
Indices: 62136871--62136911 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
62136861 CTCTAAACAT
*
62136871 AAATTACAAAATAATTTTTA
1 AAATTACAAAATAATTTATA
62136891 AAATT-CAAAAT-ATTTATA
1 AAATTACAAAATAATTTATA
62136909 AAA
1 AAA
62136912 ATTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 9 0.45
19 6 0.30
20 5 0.25
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATTACAAAATAATTTATA
Found at i:62136912 original size:19 final size:20
Alignment explanation
Indices: 62136871--62136914 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
62136861 CTCTAAACAT
*
62136871 AAATTACAAAATAATTTTTA
1 AAATTACAAAATAATTTTAA
62136891 AAATT-CAAAAT-ATTTATAA
1 AAATTACAAAATAATTT-TAA
62136910 AAATT
1 AAATT
62136915 TTAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 13 0.59
20 5 0.23
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATTACAAAATAATTTTAA
Found at i:62151294 original size:47 final size:47
Alignment explanation
Indices: 62151183--62151448 Score: 199
Period size: 47 Copynumber: 5.7 Consensus size: 47
62151173 GTTATTGTAG
* * * * *
62151183 CTAGTGTAAGA-CATGTCTGGGACA-CGCATCAGCCAT-ATTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-GATGAGAA
* * *
62151229 CCAGTGTAAGACCGTGTCTGGGACATGGCATCAACATTGAGATGAGAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATGAGAA
* * * * *
62151277 CTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACG-TAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCA-TCGACTTGAGATGAGAA
* * * * *
62151322 GTCAGTGTAAGA-CATATCTGGGACAT-GCATCGTCTACGAGATGA-TA
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGATGAGAA
* * * *
62151368 GTCAGTGTAAAACCATGTCTGGGACATGGCATCGACTTGAGATGTGAG
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGAGAA
*
62151416 CCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCG
62151449 GCAACTTACC
Statistics
Matches: 177, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 7 0.04
46 62 0.35
47 77 0.44
48 30 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGAGAA
Found at i:62151342 original size:46 final size:46
Alignment explanation
Indices: 62151230--62151448 Score: 212
Period size: 47 Copynumber: 4.7 Consensus size: 46
62151220 TTATGAGAGC
* * * * *
62151230 CAGTGTAAGACCGTGTCTGGGACATGGCATCAACATTGAGATGAGAACT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TCGAGATG-TAAGT
* * *
62151279 -AGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCGAGACGTAAGT
1 CAGTGTAAGACCATGTCTGGGACATGCA-TCGACTCGAGATGTAAGT
* *
62151324 CAGTGTAAGA-CATATCTGGGACATGCATCGTCTACGAGATG-ATAGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGTA-AGT
* * * *
62151370 CAGTGTAAAACCATGTCTGGGACATGGCATCGACTTGAGATGTGAGC
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGTAAGT
62151417 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCG
62151449 GCAACTTACC
Statistics
Matches: 144, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 8 0.06
46 52 0.36
47 67 0.47
48 17 0.12
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGTAAGT
Found at i:62151394 original size:93 final size:94
Alignment explanation
Indices: 62151227--62151448 Score: 238
Period size: 93 Copynumber: 2.4 Consensus size: 94
62151217 ATATTATGAG
* * ** * * * *
62151227 AGCCAGTGTAAGACCGTGTCTGGGACATGGCATCAAC-ATTGAGATGAGA-ACTAGTGTAAGACA
1 AGCCAGTGTAAGACCATATCTGGGACATGGCATCGTCTA-CGAGATGATAGTC-AGTGTAAAACA
* *
62151290 TGTCTGGGACAT-GCATTGGCCTCGAGACGTA
64 TGTCTGGGACATGGCA-TCGACTCGAGACGTA
*
62151321 AGTCAGTGTAAGA-CATATCTGGGACAT-GCATCGTCTACGAGATGATAGTCAGTGTAAAACCAT
1 AGCCAGTGTAAGACCATATCTGGGACATGGCATCGTCTACGAGATGATAGTCAGTGTAAAA-CAT
* * *
62151384 GTCTGGGACATGGCATCGACTTGAGATGTG
65 GTCTGGGACATGGCATCGACTCGAGACGTA
*
62151414 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATATCTGGGACATGGCATCG
62151449 GCAACTTACC
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
92 22 0.21
93 50 0.47
94 28 0.26
95 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATATCTGGGACATGGCATCGTCTACGAGATGATAGTCAGTGTAAAACATG
TCTGGGACATGGCATCGACTCGAGACGTA
Found at i:62153036 original size:14 final size:14
Alignment explanation
Indices: 62153002--62153028 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
62152992 TTTTTCTTTC
62153002 TTATTTTTTTGTAT
1 TTATTTTTTTGTAT
62153016 TTATTTTTTTGTA
1 TTATTTTTTTGTA
62153029 CTTTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (14 bp):
TTATTTTTTTGTAT
Found at i:62153422 original size:13 final size:14
Alignment explanation
Indices: 62153382--62153422 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
62153372 AATCCAAGTC
* *
62153382 AATAAAACAATTAA
1 AATAAAATAACTAA
62153396 AAT-AAATAACTAA
1 AATAAAATAACTAA
62153409 AATAAAATAA-TAA
1 AATAAAATAACTAA
62153422 A
1 A
62153423 TCAAAGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAAATAACTAA
Found at i:62158272 original size:27 final size:27
Alignment explanation
Indices: 62158225--62158303 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 27
62158215 TTTTTAGATT
* *
62158225 AAATTTTTATTTTTAATAAAAAATTTTA
1 AAATTTTAAATTTTAA-AAAAAATTTTA
*
62158253 AAATTTTAAATTTT-AAAAAATTATTTA
1 AAATTTTAAATTTTAAAAAAAAT-TTTA
** *
62158280 AAATTAAAAATTATAAAAAAAATT
1 AAATTTTAAATTTTAAAAAAAATT
62158304 AATAGAATGC
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 6 0.14
27 17 0.40
28 19 0.45
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
AAATTTTAAATTTTAAAAAAAATTTTA
Found at i:62158305 original size:25 final size:25
Alignment explanation
Indices: 62158240--62158305 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 25
62158230 TTTATTTTTA
* **
62158240 ATAAAAAATTTTAAAATTTTAAATT
1 ATAAAAAAATTTAAAATTAAAAATT
*
62158265 TTAAAAAATTATTTAAAATTAAAAATT
1 ATAAAAAA--ATTTAAAATTAAAAATT
*
62158292 ATAAAAAAAATTAA
1 ATAAAAAAATTTAA
62158306 TAGAATGCTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 12 0.36
27 21 0.64
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAAAAAAATTTAAAATTAAAAATT
Found at i:62164704 original size:2 final size:2
Alignment explanation
Indices: 62164697--62164728 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
62164687 AAAATAAAGA
62164697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62164729 GATGTTAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62172900 original size:23 final size:23
Alignment explanation
Indices: 62172870--62172918 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
62172860 CAATAAAAAT
62172870 GGTGAGTTTTAATTATTTTTCAG
1 GGTGAGTTTTAATTATTTTTCAG
62172893 GGTGAGTTTTAATTATTTTTCAG
1 GGTGAGTTTTAATTATTTTTCAG
62172916 GGT
1 GGT
62172919 AAGTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.04, G:0.24, T:0.51
Consensus pattern (23 bp):
GGTGAGTTTTAATTATTTTTCAG
Found at i:62174393 original size:20 final size:20
Alignment explanation
Indices: 62174354--62174393 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
62174344 AAATAAAAAA
* * *
62174354 ATAAAAATTAATTTTTAAAT
1 ATAAAAATTAAATCTCAAAT
62174374 ATAAAAATTAAATCTCAAAT
1 ATAAAAATTAAATCTCAAAT
62174394 TTTATCAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAAAAATTAAATCTCAAAT
Found at i:62179167 original size:24 final size:24
Alignment explanation
Indices: 62179133--62179194 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
62179123 TCACAAAGCT
* * * **
62179133 CACTATCACTATCATCATAGTTTG
1 CACTATTACTATCATAATAGCTCC
62179157 CACTATTACTATCATAATAGCTCC
1 CACTATTACTATCATAATAGCTCC
*
62179181 CGCTATTACTATCA
1 CACTATTACTATCA
62179195 ATTTCTTCGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (24 bp):
CACTATTACTATCATAATAGCTCC
Found at i:62180837 original size:16 final size:18
Alignment explanation
Indices: 62180809--62180844 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
62180799 AATATTAGTT
62180809 ATTAAATTAA-TTTTTCA
1 ATTAAATTAATTTTTTCA
62180826 ATTAAA-TAATTTTTTCA
1 ATTAAATTAATTTTTTCA
62180843 AT
1 AT
62180845 CTATTTCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAATTAATTTTTTCA
Found at i:62186445 original size:14 final size:14
Alignment explanation
Indices: 62186418--62186458 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
62186408 ATAATACAAT
62186418 TAATTTTTATAAAA
1 TAATTTTTATAAAA
62186432 TAATATTTTA-AAAA
1 TAAT-TTTTATAAAA
*
62186446 T-ATTTTAATAAAA
1 TAATTTTTATAAAA
62186459 ATTGAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 4 0.17
13 6 0.25
14 9 0.38
15 5 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TAATTTTTATAAAA
Found at i:62186716 original size:19 final size:20
Alignment explanation
Indices: 62186694--62186744 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 20
62186684 ATATTTTGTA
62186694 TTGAGATATTAAAA-ATTAT
1 TTGAGATATTAAAATATTAT
62186713 TTGAAGCA-ATTAAAATATTAT
1 TTG-AG-ATATTAAAATATTAT
62186734 TT-AGATTATTA
1 TTGAGA-TATTA
62186745 TTTAATTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
18 1 0.04
19 5 0.19
20 13 0.48
21 8 0.30
ACGTcount: A:0.45, C:0.02, G:0.10, T:0.43
Consensus pattern (20 bp):
TTGAGATATTAAAATATTAT
Found at i:62187604 original size:2 final size:2
Alignment explanation
Indices: 62187597--62187623 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
62187587 ATGTTGTTGA
62187597 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
62187624 AACTAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:62202671 original size:23 final size:24
Alignment explanation
Indices: 62202641--62202685 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
62202631 CTAATGAATG
62202641 AAAAAAA-TTTCCAAATAACATAT
1 AAAAAAATTTTCCAAATAACATAT
62202664 AAAAAAATTTTCCAAATAACAT
1 AAAAAAATTTTCCAAATAACAT
62202686 TCGTGTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27
Consensus pattern (24 bp):
AAAAAAATTTTCCAAATAACATAT
Found at i:62203060 original size:69 final size:69
Alignment explanation
Indices: 62202718--62203291 Score: 391
Period size: 69 Copynumber: 8.3 Consensus size: 69
62202708 AGCAAAGTGT
* * * * **
62202718 CATAGCCTTCAACACAATTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGCAT-GCAGATGA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGG-TTCGTAGGCGA
*
62202782 AGTGC
65 AGAGC
*** * * * * * *
62202787 TGCAGCCTCTAACACAGTTAATGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTTGTAGGCAAA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
62202852 GAGC
66 GAGC
** * * * * * *
62202856 CGCATCCTCTAACAAATTTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGAGAA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
*
62202921 AAGC
66 GAGC
* * * * * ** * * *
62202925 CACAACATTCAACACAGTTAGCGAGAGCAAAGCTCCCAGTTGTCATATTAAGGTACGTAGGAGAA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
62202990 GAGC
66 GAGC
* * ** *
62202994 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATTATATTAAGATTCACACGCGAA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
**
62203059 GATT
66 GAGC
* * * ** * * * *
62203063 CGTAGCCTTTAACACAATTAGTG-GAAGCAAATCTCTTAGCTATCATATTAAGGTTCGCAAGCTA
1 CATAGCCTTTAACACAGTTAGTGAG-AGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGA
62203127 AGAGC
65 AGAGC
* * * * * * * * * **
62203132 CATAG-CTTTGAACAGAGTTAGTGAAAGAAAAGCTCCCAATTTTCATTTTAATGCTCGCAGATGA
1 CATAGCCTTT-AACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGA
62203196 AGAGC
65 AGAGC
** * ** * * * * * *
62203201 CGCAGCC-TCAACACAGTTAGCAAGAGCAAAGTTCCCAATTGTCATATTAAGGCTCATAAGCGAA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
62203265 GAGC
66 GAGC
* * * * *
62203269 AACAGCCTTCAATATAGTTAGTG
1 CATAGCCTTTAACACAGTTAGTG
62203292 GGAATTAAAA
Statistics
Matches: 389, Mismatches: 110, Indels: 12
0.76 0.22 0.02
Matches are distributed among these distances:
68 56 0.14
69 332 0.85
70 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (69 bp):
CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGTTCGTAGGCGAA
GAGC
Found at i:62203077 original size:138 final size:137
Alignment explanation
Indices: 62202718--62203252 Score: 447
Period size: 138 Copynumber: 3.9 Consensus size: 137
62202708 AGCAAAGTGT
* * * *
62202718 CATAGCCTTCAACACAATTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGCATGCAGA-TGA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGG-ATTCACAGTGA
* * ** *
62202782 AGTGCTGCAGCC-TCTAACACAGTTAATGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTTGTA
65 AGAGCCGCAGCCTTC-AACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGTA
62202846 GGCAAAGAGC
129 GG-AAAGAGC
** * * * * * ** *
62202856 CGCATCCTCTAACAAATTTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGG-TTCGTAGGAGA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGATTCACA-GTGA
* * * * * *
62202920 AAAGCCACAACATTCAACACAGTTAGCGAGAGCAAAGCTCCCAGTTGTCATATTAAGGTACGTAG
65 AGAGCCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGTAG
62202985 GAGAAGAGC
130 GA-AAGAGC
* *
62202994 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATTATATTAA-GATTCACACGCGA
1 CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGATTCACA-GTGA
** * * * * * ** * *
62203058 AGATTCGTAGCCTTTAACACAATTAGTG-GAAGCAAATCTCTTAGCTATCATATTAAGGTTCGCA
65 AGAGCCGCAGCCTTCAACACAGTTAGCGAG-AGCAAAGCTCCCAGCTGTCATATTAAGGTTCG-T
**
62203122 AGCTAAGAGC
128 AGGAAAGAGC
* * * * * * * * *
62203132 CATAG-CTTTGAACAGAGTTAGTGAAAGAAAAGCTCCCAATTTTCATTTTAATG-CTCGCAGATG
1 CATAGCCTTT-AACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGATTCACAG-TG
* * **
62203195 AAGAGCCGCAGCC-TCAACACAGTTAGCAAGAGCAAAGTTCCCAATTGTCATATTAAGG
64 AAGAGCCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGG
62203253 CTCATAAGCG
Statistics
Matches: 308, Mismatches: 78, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
136 3 0.01
137 40 0.13
138 260 0.84
139 5 0.02
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (137 bp):
CATAGCCTTTAACACAGTTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGATTCACAGTGAA
GAGCCGCAGCCTTCAACACAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATATTAAGGTTCGTAGG
AAAGAGC
Found at i:62203401 original size:59 final size:59
Alignment explanation
Indices: 62203305--62203512 Score: 248
Period size: 58 Copynumber: 3.6 Consensus size: 59
62203295 ATTAAAAACT
* * *
62203305 CCCAGTTATCTTATATTTCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATC
1 CCCAGCTATGTTATCTTTCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATC
* * **
62203364 CCCAGCTATGTTAT-TTGTCAAAATTTTCTTAATTAT-AAACAGCTCATTGAGTAACATC
1 CCCAGCTATGTTATCTT-TCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATC
* * * * * *
62203422 CCTATCTGTGTTATCTTTCAAAATTTTTTTAAGTATAAAACAACTCGCGGAGTAA-AT-
1 CCCAGCTATGTTATCTTTCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATC
62203479 --CAGCTATGTTATCTTTCAAAATTTTCTTAAGTAT
1 CCCAGCTATGTTATCTTTCAAAATTTTCTTAAGTAT
62203513 GAAATAGCTT
Statistics
Matches: 127, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
55 30 0.24
58 51 0.40
59 46 0.36
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (59 bp):
CCCAGCTATGTTATCTTTCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATC
Found at i:62203555 original size:113 final size:114
Alignment explanation
Indices: 62203321--62203571 Score: 271
Period size: 113 Copynumber: 2.2 Consensus size: 114
62203311 TATCTTATAT
*
62203321 TTCAAAATTTTCTTAAGTATAAAACAACTCACAGAGTAACATCCCCAGCTATGTTATTTGTCAAA
1 TTCAAAATTTTTTTAAGTATAAAACAACTCACAGAGTAACAT--CCAGCTATGTTATTTGTCAAA
* * * *
62203386 ATTTTCTTAATTATAAACAGCTCATTGAGTAACATCCCTATCTGTGTTATCT
64 ATTTTCTTAAGTATAAACAGCTCA-TGAGTAACAACCCTATCTGTATTATCC
* *
62203438 TTCAAAATTTTTTTAAGTATAAAACAACTCGCGGAGTAA-AT-CAGCTATGTTATCTT-TCAAAA
1 TTCAAAATTTTTTTAAGTATAAAACAACTCACAGAGTAACATCCAGCTATGTTAT-TTGTCAAAA
* * * *
62203500 TTTTCTTAAGTATGAAATAGCTTGCA-GATTCACAACCTTAGT-T-TATTATCC
65 TTTTCTTAAGTAT-AAACAGC-T-CATGAGTAACAACCCTA-TCTGTATTATCC
*
62203551 TTCAAGATTTTTCTTAAGTAT
1 TTCAAAATTTTT-TTAAGTAT
62203572 TAAATAGCTC
Statistics
Matches: 116, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
113 47 0.41
114 27 0.23
115 2 0.02
116 4 0.03
117 36 0.31
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (114 bp):
TTCAAAATTTTTTTAAGTATAAAACAACTCACAGAGTAACATCCAGCTATGTTATTTGTCAAAAT
TTTCTTAAGTATAAACAGCTCATGAGTAACAACCCTATCTGTATTATCC
Found at i:62205730 original size:50 final size:50
Alignment explanation
Indices: 62205655--62205879 Score: 224
Period size: 50 Copynumber: 4.5 Consensus size: 50
62205645 TGAATACACG
*
62205655 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * * ** *
62205705 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * *
62205756 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGA-TGGTAAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAA-GTCACA
* * * * * * *
62205806 TGTGTAGTACTAAGTGTAGGTTACTACGTGTACCGGATTGTT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
62205855 TGTGTAGTACTAAGTGCAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
62205880 GTGCGTATCA
Statistics
Matches: 141, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 27 0.19
50 68 0.48
51 36 0.26
52 3 0.02
53 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:62209028 original size:22 final size:22
Alignment explanation
Indices: 62209003--62209045 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
62208993 AGAGAATATT
*
62209003 GGTACTAGAGACAGCAAATGTC
1 GGTACTAGAGACAACAAATGTC
*
62209025 GGTACTAGGGACAACAAATGT
1 GGTACTAGAGACAACAAATGT
62209046 TAGTACCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (22 bp):
GGTACTAGAGACAACAAATGTC
Found at i:62209051 original size:22 final size:22
Alignment explanation
Indices: 62209004--62209051 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
62208994 GAGAATATTG
* *
62209004 GTACTAGAGACAGCAAATGTCG
1 GTACTAGAGACAACAAATGTCA
* *
62209026 GTACTAGGGACAACAAATGTTA
1 GTACTAGAGACAACAAATGTCA
62209048 GTAC
1 GTAC
62209052 CGAAGGTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (22 bp):
GTACTAGAGACAACAAATGTCA
Found at i:62210248 original size:35 final size:36
Alignment explanation
Indices: 62210186--62210266 Score: 128
Period size: 35 Copynumber: 2.2 Consensus size: 36
62210176 CAATGATATG
62210186 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
*
62210222 CAATTTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
62210257 TGCAATCTTA
1 --CAATCTTA
62210267 AAAGATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
35 19 0.46
36 15 0.37
37 7 0.17
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:62210275 original size:17 final size:19
Alignment explanation
Indices: 62210178--62210266 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
62210168 ATAATCTTCA
62210178 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62210197 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
62210216 ATGATA--CAATTTTAGAT
1 ATGATATGCAATCTTAGAT
62210233 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62210251 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
62210267 AAAGATATGA
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.23
18 15 0.23
19 35 0.54
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:62210582 original size:17 final size:17
Alignment explanation
Indices: 62210558--62210592 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
62210548 TGTTTCCTTG
*
62210558 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
62210576 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
62210593 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:62217352 original size:859 final size:860
Alignment explanation
Indices: 62215692--62217414 Score: 3189
Period size: 859 Copynumber: 2.0 Consensus size: 860
62215682 GAGTCAACAG
* *
62215692 CTTTGAATGGAAGAATAGCGAGGTGGCAAATTCTGCTTTCAGAGTTTGACATAGTTTATGTGAGC
1 CTTTGAATGGAAGAATAGAGAGGTGGAAAATTCTGCTTTCAGAGTTTGACATAGTTTATGTGAGC
*
62215757 CAGAAGGCTATAAAAGGAAGTGCGATAGTGGAATTTCTGGCTAGGAGAGCTCTAGAAGACTATGA
66 CAGAAGGCTATAAAAAGAAGTGCGATAGTGGAATTTCTGGCTAGGAGAGCTCTAGAAGACTATGA
* * *
62215822 GCCGTTAAATTTTGATTTCCCAAATGAGGAGTTGATGTGTGTAGCAGCTATAGAGGATTATCCTT
131 ACCGTTAAATTTTGATTTCCCAAATAAGGAGTTGATGTGTGTAGCAGCTACAGAGGATTATCCTT
62215887 GGAAGTTGAGCTTTGATGGGGCATCTCCAATGCAGTGGGAAATGGAATTGAGGTAGTCTTGGTAT
196 GGAAGTTGAGCTTTGATGGGGCA-CTCCAATGCAGTGGGAAATGGAATTGAGGTAGTCTTGGTAT
62215952 CCCCAAATGGTGATTATTATCCATTCACGTGCAAGTTGGATTTTTATTGCACAAACAATATGGCC
260 CCCCAAATGGTGATTATTATCCATTCACGTGCAAGTTGGATTTTTATTGCACAAACAATATGGCC
*
62216017 GAGTATGAAGCATGCATCATGGGACTCCGAGCAGCTATAGAGTGAAGAATAAGAACCTTGGAAGT
325 GAGTATGAAGCATGCATCATGGGACTCCGAGCAGCTATAGAGCGAAGAATAAGAACCTTGGAAGT
*
62216082 TTATGGAGACTCCGCGTTGGTAATTTACCAGCTTAAAGGTGAATGGGAGACAAGGGATCCTAAAT
390 TTATGGAGACTCCGCGTTGGTAATTTACCAGCTTAAAGGTGAATGAGAGACAAGGGATCCTAAAT
* *
62216147 TGATCAATTATCGAAAGGTAGTTTTGGGGTTACTTGAGGAGTTTGATGACATCACTTTCAATTAT
455 TGATCAATTATCGAAAGGTAGTTTTAGGGTTACTTGAGGAGTTCGATGACATCACTTTCAATTAT
*
62216212 ATCCCACGAGACAAAAGCCAGATGGCAGATGCTCTAGCAACCTTGGCTTCAATGATTAAAGTGAA
520 ATCCCACGAGACAAAAACCAGATGGCAGATGCTCTAGCAACCTTGGCTTCAATGATTAAAGTGAA
62216277 TAAAGAGGAGGAGATGAGACCCATTCAGATGAGTATCTTCGAGGCTCCAGCTCACTGTTGTAACA
585 TAAAGAGGAGGAGATGAGACCCATTCAGATGAGTATCTTCGAGGCTCCAGCTCACTGTTGTAACA
*
62216342 TTGAGGAAGAAGAAAAGGATGATAACCCTTGGTATCAAGATATATTGTGATATGTGAGAGATCGT
650 TTGAGGAAGAAGAAAAGGATGATAACCCTTGGTATCAAGATATATTGCGATATGTGAGAGATCGT
*
62216407 AAATACCCAGAACAGGCAACTGAAAATGACAAGCGAACTTTAAGGAGATTAGCCTGCGACTACGT
715 AAATACCCAGAACAGGCAACTAAAAATGACAAGCGAACTTTAAGGAGATTAGCCTGCGACTACGT
62216472 TTTGGAAGGGGACATCTTGTACAAAAGAAGAAA-AGACCAAGTACTGTTGAGATGTGTTGACGCC
780 TTTGGAAGGGGACATCTTGTACAAAAGAAGAAAGA-ACCAAGTACTGTTGAGATGTGTTGACGCC
62216536 GTGGAAGCTAAGTTAAT
844 GTGGAAGCTAAGTTAAT
62216553 CTTTGAATGGAAGAATAGAGAGGTGGAAAATTCTGCTTTCAGAGTTTGACATAGTTTATGTGAGC
1 CTTTGAATGGAAGAATAGAGAGGTGGAAAATTCTGCTTTCAGAGTTTGACATAGTTTATGTGAGC
*
62216618 CAGAAGGCTATAAAAAGAAGTGCGATAGTGGAATTTTTGGCTAGGAGAGCTCTAGAAGACTATGA
66 CAGAAGGCTATAAAAAGAAGTGCGATAGTGGAATTTCTGGCTAGGAGAGCTCTAGAAGACTATGA
*
62216683 ACCGTTGAATTTTGATTTCCCAAATAAGGAGTTGATGTGTGTAGCAGCTACAGAGGATTATCCTT
131 ACCGTTAAATTTTGATTTCCCAAATAAGGAGTTGATGTGTGTAGCAGCTACAGAGGATTATCCTT
62216748 GGAAGTTGAGCTTTGATGGGGCA-TCCAATGCAGTGGGAAATGGAATTGAGGTAGTCTTGGTATC
196 GGAAGTTGAGCTTTGATGGGGCACTCCAATGCAGTGGGAAATGGAATTGAGGTAGTCTTGGTATC
62216812 CCCAAATGGTGATTATTATCCATTCACGTGCAAGTTGGATTTTTATTGCACAAACAATATGGCCG
261 CCCAAATGGTGATTATTATCCATTCACGTGCAAGTTGGATTTTTATTGCACAAACAATATGGCCG
* **
62216877 AGTATGAAGCGTGCATCATGGGACTCCGAGTGGCTATAGAGCGAAGAATAAGAACCTTGGAAGTT
326 AGTATGAAGCATGCATCATGGGACTCCGAGCAGCTATAGAGCGAAGAATAAGAACCTTGGAAGTT
* *
62216942 TATGGAGACTCTGTGTTGGTAATTTACCAGCTTAAAGGTGAATGAGAGACAAGGGATCCTAAATT
391 TATGGAGACTCCGCGTTGGTAATTTACCAGCTTAAAGGTGAATGAGAGACAAGGGATCCTAAATT
*
62217007 GATCAATTATTGAAAGGTAGTTTTAGGGTTACTTGAGGAGTTCGATGACATCACTTTCAATTATA
456 GATCAATTATCGAAAGGTAGTTTTAGGGTTACTTGAGGAGTTCGATGACATCACTTTCAATTATA
62217072 TCCCACGAGACAAAAACCAGATGGCAGATGCTCTAGCAACCTTGGCTTCAATGATTAAAGTGAAT
521 TCCCACGAGACAAAAACCAGATGGCAGATGCTCTAGCAACCTTGGCTTCAATGATTAAAGTGAAT
62217137 AAAGAGGAGGAGATGAGACCCATTCAGATGAGTATCTTCGAGGCTCCAGCTCACTGTTGTAACAT
586 AAAGAGGAGGAGATGAGACCCATTCAGATGAGTATCTTCGAGGCTCCAGCTCACTGTTGTAACAT
*
62217202 TGAGGAAGAAGAAAAGGATGATAACCCTTGGTATCAGGATATATTGCGATATGTGAGAGATCGTA
651 TGAGGAAGAAGAAAAGGATGATAACCCTTGGTATCAAGATATATTGCGATATGTGAGAGATCGTA
* *
62217267 AATACCCAGAACAGGCAACTAAAAATGATAAGTGAACTTTAAGGAGATTAGCCTGCGACTACGTT
716 AATACCCAGAACAGGCAACTAAAAATGACAAGCGAACTTTAAGGAGATTAGCCTGCGACTACGTT
*
62217332 TTGGATGGGGACATCTTGTACAAAAGAAGAAAGAACCAAGTACTGTTGAGATGTGTTGACGCCGT
781 TTGGAAGGGGACATCTTGTACAAAAGAAGAAAGAACCAAGTACTGTTGAGATGTGTTGACGCCGT
62217397 GGAAGCTAAGTTAAT
846 GGAAGCTAAGTTAAT
62217412 CTT
1 CTT
62217415 GGAAGAAGTT
Statistics
Matches: 836, Mismatches: 25, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
859 625 0.75
860 1 0.00
861 210 0.25
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (860 bp):
CTTTGAATGGAAGAATAGAGAGGTGGAAAATTCTGCTTTCAGAGTTTGACATAGTTTATGTGAGC
CAGAAGGCTATAAAAAGAAGTGCGATAGTGGAATTTCTGGCTAGGAGAGCTCTAGAAGACTATGA
ACCGTTAAATTTTGATTTCCCAAATAAGGAGTTGATGTGTGTAGCAGCTACAGAGGATTATCCTT
GGAAGTTGAGCTTTGATGGGGCACTCCAATGCAGTGGGAAATGGAATTGAGGTAGTCTTGGTATC
CCCAAATGGTGATTATTATCCATTCACGTGCAAGTTGGATTTTTATTGCACAAACAATATGGCCG
AGTATGAAGCATGCATCATGGGACTCCGAGCAGCTATAGAGCGAAGAATAAGAACCTTGGAAGTT
TATGGAGACTCCGCGTTGGTAATTTACCAGCTTAAAGGTGAATGAGAGACAAGGGATCCTAAATT
GATCAATTATCGAAAGGTAGTTTTAGGGTTACTTGAGGAGTTCGATGACATCACTTTCAATTATA
TCCCACGAGACAAAAACCAGATGGCAGATGCTCTAGCAACCTTGGCTTCAATGATTAAAGTGAAT
AAAGAGGAGGAGATGAGACCCATTCAGATGAGTATCTTCGAGGCTCCAGCTCACTGTTGTAACAT
TGAGGAAGAAGAAAAGGATGATAACCCTTGGTATCAAGATATATTGCGATATGTGAGAGATCGTA
AATACCCAGAACAGGCAACTAAAAATGACAAGCGAACTTTAAGGAGATTAGCCTGCGACTACGTT
TTGGAAGGGGACATCTTGTACAAAAGAAGAAAGAACCAAGTACTGTTGAGATGTGTTGACGCCGT
GGAAGCTAAGTTAAT
Found at i:62219684 original size:89 final size:87
Alignment explanation
Indices: 62219555--62219717 Score: 220
Period size: 89 Copynumber: 1.9 Consensus size: 87
62219545 ATTCGACGGA
* *
62219555 GAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACAC-T-GAAGCAGATCCAAGATG
62219620 ATTTGGCATCTTTGCGTTGACAAG
64 ATTTGGCATCTTTGCGTTGACAAG
* ** * * *
62219644 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCA-GATGTTTACACTGAAGCAGATCCAAGATGA
62219708 TTTGGCATCT
65 TTTGGCATCT
62219718 CTGTACTATC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
87 26 0.40
88 1 0.02
89 37 0.57
90 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCAGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCTTTGCGTTGACAAG
Found at i:62219884 original size:78 final size:78
Alignment explanation
Indices: 62219750--62220199 Score: 695
Period size: 78 Copynumber: 5.8 Consensus size: 78
62219740 GAAGAAACAA
** * * * * * *
62219750 ATTTGGCATCTCCATATTCGACGGAGAGCAGATTGAAGACATAGCAGATCTGACCTTTATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
62219815 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
62219828 ATTTAGCATCTCTGTATTAGACGGGGAACAAATCGAAGATACAACAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
*
62219893 CAGATCTAAGATG
66 CAGATCCAAGATG
*
62219906 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCAATGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
*
62219971 CAAATCCAAGATG
66 CAGATCCAAGATG
*
62219984 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
*
62220049 TAGATCCAAGATG
66 CAGATCCAAGATG
*
62220062 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCT-GACCTTCATTGAA
62220126 GCAGATCCAAGATG
65 GCAGATCCAAGATG
* * *
62220140 ATTTGGTATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCAT
62220200 GTGTTTACAC
Statistics
Matches: 341, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 339 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:62220292 original size:45 final size:44
Alignment explanation
Indices: 62220228--62220376 Score: 181
Period size: 44 Copynumber: 3.4 Consensus size: 44
62220218 ATCCAAGATG
* * *
62220228 ACAGATTTGGCATATCTGTATTAGACGGGGAGTAAATCGGAGATA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA-A
* * *
62220273 ACAGATTTGGCATCTCTGTATTAGACAGGGAGCAGATTGAAGAA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGAA
* * * * *
62220317 GCAGATTTGACGTCTCTGTATTAGTCGGGGAACAAATCGAAGAA
1 ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGAA
*
62220361 ACAAATTTGGCATCTC
1 ACAGATTTGGCATCTC
62220377 CATATTCTTC
Statistics
Matches: 86, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 49 0.57
45 37 0.43
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (44 bp):
ACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGAA
Found at i:62220984 original size:35 final size:37
Alignment explanation
Indices: 62220913--62221010 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
62220903 ATAATCTTCA
62220913 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
62220951 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
62220986 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
62221011 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:62221010 original size:17 final size:19
Alignment explanation
Indices: 62220913--62221003 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
62220903 ATAATCTTCA
62220913 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62220932 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62220951 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62220968 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
62220986 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
62221004 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:62221029 original size:22 final size:22
Alignment explanation
Indices: 62220913--62221026 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
62220903 ATAATCTTCA
62220913 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
62220932 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
62220951 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
62220968 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
62220986 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
62221008 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
62221027 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:62221317 original size:17 final size:17
Alignment explanation
Indices: 62221293--62221327 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
62221283 TGTTTCCCTG
*
62221293 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
62221311 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
62221328 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:62222824 original size:20 final size:20
Alignment explanation
Indices: 62222799--62222837 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
62222789 CGAGTTAGAA
62222799 CATATTTTTAAGGTAACTTT
1 CATATTTTTAAGGTAACTTT
62222819 CATATTTTTAAGGTAACTT
1 CATATTTTTAAGGTAACTT
62222838 AACTTTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (20 bp):
CATATTTTTAAGGTAACTTT
Found at i:62230681 original size:24 final size:21
Alignment explanation
Indices: 62230650--62230696 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
62230640 GAAATTTTTA
62230650 TGAAACAGGGTCACACGTACGTG
1 TGAAACAGGG--ACACGTACGTG
*
62230673 TGAACACAGGGACACGTTCGTG
1 TGAA-ACAGGGACACGTACGTG
62230695 TG
1 TG
62230697 TCTTCAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 4 0.18
24 6 0.27
ACGTcount: A:0.28, C:0.21, G:0.32, T:0.19
Consensus pattern (21 bp):
TGAAACAGGGACACGTACGTG
Found at i:62232435 original size:50 final size:50
Alignment explanation
Indices: 62232360--62232747 Score: 354
Period size: 50 Copynumber: 7.7 Consensus size: 50
62232350 ACTGAAGCTC
* * * *
62232360 TCTGGTACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * * * *
62232410 TCTGGTATATGTAGTAGCCTGCACTTAGTATTACACACGTAACTTAATC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCT-ATCAA
* ** *
62232460 TCTGATACACGTAGTAG-CTGCACTTAGTACTACACATGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* ** * *
62232511 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
* * * *
62232560 TCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACT-TGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA-TGTGACCTATCAA
* * * ** *
62232610 TCTGATACACGTAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAA
* * * * * * * *
62232662 T-GGGTACGCATAATAACCTGCACTTAGTACTACAAATGCGACCTATTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
62232711 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
62232748 CGTGGCTCAC
Statistics
Matches: 264, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
49 30 0.11
50 171 0.65
51 61 0.23
52 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
Found at i:62232716 original size:151 final size:150
Alignment explanation
Indices: 62232363--62232750 Score: 623
Period size: 151 Copynumber: 2.6 Consensus size: 150
62232353 GAAGCTCTCT
* * *
62232363 GGTACGCATAGTATCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTATATGTAGTAGC
1 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
62232428 CTGCACTTAGTATTACACACGTAACTTAATCATCTGATACACGTAGTAGCTGCACTTAGTACTAC
66 CTGCACTTAGTACTACACACGTAACTTAACCATCTGATACACGTAGTACCTGCACTTAGTACTAC
*
62232493 ACATGTGATCGAAGTTAACG
131 ACACGTGATCGAAGTTAACG
* *
62232513 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
62232578 CTGCATTTAGTACTACACACTTGACTTAACCATCTGATACACGTAGTATCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACGTAACTTAACCATCTGATACACGTAGTA-CCTGCACTTAGTACTA
*
62232643 CACACGTGATCGAAGTTAATG
130 CACACGTGATCGAAGTTAACG
* * *
62232664 GGTACGCATAATAACCTGCACTTAGTACTACAAATGCGACCTATTAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
62232729 CTGCACTTAGTACTACACACGT
66 CTGCACTTAGTACTACACACGT
62232751 GGCTCACAAC
Statistics
Matches: 218, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
150 104 0.48
151 114 0.52
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (150 bp):
GGTACGCATAGTAACCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACACGTAACTTAACCATCTGATACACGTAGTACCTGCACTTAGTACTAC
ACACGTGATCGAAGTTAACG
Found at i:62236128 original size:40 final size:40
Alignment explanation
Indices: 62236083--62236249 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62236073 CGGAATATAA
62236083 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62236123 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
62236163 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62236203 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62236242 CCGGATAT
1 CCGGATAT
62236250 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62244145 original size:40 final size:40
Alignment explanation
Indices: 62244100--62244266 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
62244090 CGGAATATAA
62244100 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62244140 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
62244180 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
62244220 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
62244259 CCGGATAT
1 CCGGATAT
62244267 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62246517 original size:15 final size:15
Alignment explanation
Indices: 62246499--62246557 Score: 84
Period size: 15 Copynumber: 3.9 Consensus size: 15
62246489 ACCAGGATTA
*
62246499 AGAAGTCCAAGATAG
1 AGAAATCCAAGATAG
*
62246514 AGAAGTCCAAGATAG
1 AGAAATCCAAGATAG
62246529 AGAAATCCAAGATA-
1 AGAAATCCAAGATAG
62246543 AGGAAATCCAAGATA
1 A-GAAATCCAAGATA
62246558 CAATATCATA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
14 1 0.02
15 41 0.98
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAG
Found at i:62250285 original size:50 final size:50
Alignment explanation
Indices: 62250058--62250448 Score: 344
Period size: 50 Copynumber: 7.8 Consensus size: 50
62250048 ACTGAAGCTC
* * **
62250058 TCTGGTACGCATAGTATG-CTGCACTTAGTACTACACA-GCAACCTATCAA
1 TCTGGTACACGTAGTA-GCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * *
62250107 TCTGGTATATGTAGTAGCCTGCACTGAGTACTACACACGTGACTTAATC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT-ATCAA
* * * ** *
62250157 TCTGATACACGTAGTAG-CTGCACATAGTACTACACATGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* ** * * *
62250208 -CGGGTATGCATAGTAGGCTGCACTTAGTACTACACACGGGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * * * *
62250257 TCTGGTACACGTAGTAGCCTGCATTTAGTATTACACACGTGACTTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
* * ** *
62250307 TCTGATACACGTAGTATCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAA
* * * * * * *
62250359 T-GGGTACGCATAGTAACCTGTACTTAGTACTACAAATGTGACCTATCAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
*
62250408 TCTGGTACACGTAGTAGCCTGCACTTAATACTACACACGTG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG
62250449 GCTCGCAACA
Statistics
Matches: 264, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
48 1 0.00
49 59 0.22
50 143 0.54
51 59 0.22
52 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAA
Found at i:62250402 original size:151 final size:149
Alignment explanation
Indices: 62250061--62250448 Score: 569
Period size: 151 Copynumber: 2.6 Consensus size: 149
62250051 GAAGCTCTCT
* * * *
62250061 GGTACGCATAGTATGCTGCACTTAGTACTACACAGCAACCTATCAATCTGGTATATGTAGTAGCC
1 GGTACGCATAGTAAGCTGCACTTAGTACTACACAGCGACCTATCAATCTGGTACACGTAGTAGCC
* * *
62250126 TGCACTGAGTACTACACACGTGACTTAATCATCTGATACACGTAGTAGCTGCACATAGTACTACA
66 TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTACCTGCACATAGTACTACA
*
62250191 CATGTGATCGAAGTTAACG
131 CACGTGATCGAAGTTAACG
* * *
62250210 GGTATGCATAGTAGGCTGCACTTAGTACTACACACGGGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAAGCTGCACTTAGTACTACACA-GCGACCTATCAATCTGGTACACGTAGTAGC
* * *
62250275 CTGCATTTAGTATTACACACGTGACTTAACCATCTGATACACGTAGTATCCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTA-CCTGCACATAGTACTA
*
62250340 CACACGTGATCGAAGTTAATG
129 CACACGTGATCGAAGTTAACG
* * * *
62250361 GGTACGCATAGTAACCTGTACTTAGTACTACAAATGTGACCTATCAATCTGGTACACGTAGTAGC
1 GGTACGCATAGTAAGCTGCACTTAGTACTACACA-GCGACCTATCAATCTGGTACACGTAGTAGC
*
62250426 CTGCACTTAATACTACACACGTG
65 CTGCACTTAGTACTACACACGTG
62250449 GCTCGCAACA
Statistics
Matches: 213, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
149 32 0.15
150 70 0.33
151 111 0.52
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (149 bp):
GGTACGCATAGTAAGCTGCACTTAGTACTACACAGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTACCTGCACATAGTACTACA
CACGTGATCGAAGTTAACG
Found at i:62251916 original size:15 final size:15
Alignment explanation
Indices: 62251896--62251926 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
62251886 CACACGCCCT
62251896 TGTCCATCGCCCGTG
1 TGTCCATCGCCCGTG
62251911 TGTCCATCGCCCGTG
1 TGTCCATCGCCCGTG
62251926 T
1 T
62251927 CCCTCACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.26, T:0.29
Consensus pattern (15 bp):
TGTCCATCGCCCGTG
Found at i:62251926 original size:13 final size:13
Alignment explanation
Indices: 62251890--62251928 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
62251880 GCCTCGCACA
*
62251890 CGCCCTTGTCCAT
1 CGCCCGTGTCCAT
62251903 CGCCCGTGTGTCCAT
1 CGCCC--GTGTCCAT
62251918 CGCCCGTGTCC
1 CGCCCGTGTCC
62251929 CTCACACGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 11 0.48
15 12 0.52
ACGTcount: A:0.05, C:0.46, G:0.23, T:0.26
Consensus pattern (13 bp):
CGCCCGTGTCCAT
Found at i:62253214 original size:48 final size:48
Alignment explanation
Indices: 62253143--62253417 Score: 259
Period size: 48 Copynumber: 5.8 Consensus size: 48
62253133 AAGGTAAATT
* * * * *
62253143 GCCGATTCCATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
62253191 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTTTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
62253239 GTCGATGCCATGTCCCAGACATGGTTTTACA-TTGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
** *** * * * * * *
62253286 GTTGATATTATGTCCCAGACATAGTCTTACACCAGCACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
62253334 ACCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
62253382 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
62253418 ATACATATCA
Statistics
Matches: 176, Mismatches: 47, Indels: 8
0.76 0.20 0.03
Matches are distributed among these distances:
47 35 0.20
48 139 0.79
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:62253317 original size:95 final size:96
Alignment explanation
Indices: 62253144--62253427 Score: 320
Period size: 96 Copynumber: 3.0 Consensus size: 96
62253134 AGGTAAATTG
* * * * * * *
62253144 CCGATTCCATGTTCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAAT-GTGGCCGATACCATGTCCCA
* * * * **
62253208 GACATGGTCTTACACTAGCTCTCGTTTCAATG
65 GACATGGTCTTACACTAGCACACATATCAACA
* ** * ** **
62253240 TCGATGCCATGTCCCAGACATGGTTTTACA-TTGCTCTCATAATGTGGTTGATATTATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAATGTGGCCGATACCATGTCCCAG
* *
62253304 ACATAGTCTTACACCAGCACACATATCAACA
66 ACATGGTCTTACACTAGCACACATATCAACA
*
62253335 CCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAATGTGGCCGATACCATGTCCCAG
*
62253400 ACATGGTCTTACACTAGCATACATATCA
66 ACATGGTCTTACACTAGCACACATATCA
62253428 CCCAAATGTC
Statistics
Matches: 153, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
95 73 0.48
96 80 0.52
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
CCGATGCCATGTCCCAGACATGGCCTTACACTGGCTCTCATAATGTGGCCGATACCATGTCCCAG
ACATGGTCTTACACTAGCACACATATCAACA
Found at i:62254644 original size:5 final size:5
Alignment explanation
Indices: 62254636--62254695 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
62254626 TAATAGATGA
* * *
62254636 GATAT GATAT GATAT GATAT GATAAGA GATAT GATGT GATAT GCTAT GAGATAT
1 GATAT GATAT GATAT GATAT GAT-A-T GATAT GATAT GATAT GATAT --GATAT
62254690 GATAT G
1 GATAT G
62254696 GCATATGCTA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 36 0.80
6 2 0.04
7 7 0.16
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:62254666 original size:22 final size:22
Alignment explanation
Indices: 62254641--62254695 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
62254631 GATGAGATAT
62254641 GATATGATATGATATGATAAGA
1 GATATGATATGATATGATAAGA
* * *
62254663 GATATGATGTGATATGCTATGA
1 GATATGATATGATATGATAAGA
62254685 GATATGATATG
1 GATATGATATG
62254696 GCATATGCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.38, C:0.02, G:0.25, T:0.35
Consensus pattern (22 bp):
GATATGATATGATATGATAAGA
Found at i:62254693 original size:27 final size:25
Alignment explanation
Indices: 62254631--62254695 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 25
62254621 TGTTATAATA
62254631 GATGAGATATGATATGATATGATAT
1 GATGAGATATGATATGATATGATAT
* *
62254656 GAT-A-AGA-GATATGATGTGATAT
1 GATGAGATATGATATGATATGATAT
62254678 GCTATGAGATATGATATG
1 G--ATGAGATATGATATG
62254696 GCATATGCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
22 15 0.47
23 2 0.06
24 3 0.09
25 4 0.12
26 2 0.06
27 6 0.19
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34
Consensus pattern (25 bp):
GATGAGATATGATATGATATGATAT
Found at i:62254701 original size:12 final size:11
Alignment explanation
Indices: 62254636--62254707 Score: 60
Period size: 12 Copynumber: 6.5 Consensus size: 11
62254626 TAATAGATGA
62254636 GATAT-GATAT
1 GATATGGATAT
62254646 GATAT-GATAT
1 GATATGGATAT
*
62254656 GATAAGAGATAT
1 GATATG-GATAT
*
62254668 GATGT-GATAT
1 GATATGGATAT
*
62254678 GCTATGAGATAT
1 GATATG-GATAT
62254690 GATATGGCATAT
1 GATATGG-ATAT
*
62254702 GCTATG
1 GATATG
62254708 CCGTGATATG
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
10 22 0.44
11 1 0.02
12 27 0.54
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.35
Consensus pattern (11 bp):
GATATGGATAT
Found at i:62262563 original size:50 final size:50
Alignment explanation
Indices: 62262483--62262579 Score: 167
Period size: 50 Copynumber: 1.9 Consensus size: 50
62262473 TACTATAGAG
* * *
62262483 ATAGTACGCCTCCATGGGATTCCTTTATCCATTGTGTTAGATAGGGATTC
1 ATAGTACGCCTCCATGGGATTCCCTCATCCATTGTGTCAGATAGGGATTC
62262533 ATAGTACGCCTCCATGGGATTCCCTCATCCATTGTGTCAGATAGGGA
1 ATAGTACGCCTCCATGGGATTCCCTCATCCATTGTGTCAGATAGGGA
62262580 ATTGAGGTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (50 bp):
ATAGTACGCCTCCATGGGATTCCCTCATCCATTGTGTCAGATAGGGATTC
Found at i:62267214 original size:38 final size:38
Alignment explanation
Indices: 62267110--62267242 Score: 135
Period size: 38 Copynumber: 3.5 Consensus size: 38
62267100 ATGTAAAAAT
** * *
62267110 AGTAGACATGCTTAACATGTATTCAATTCAATAGTAGC
1 AGTAGACATGCTTAACATGTATTCGGTTCAACAGTAAC
* *
62267148 AATAGACATGCTTAACATGTATTGGGTTCAACAGTAAC
1 AGTAGACATGCTTAACATGTATTCGGTTCAACAGTAAC
* * *
62267186 AGTAGGCATGCTTAACATGT-TCTCGGTTCAGCAATAAC
1 AGTAGACATGCTTAACATGTAT-TCGGTTCAACAGTAAC
* *
62267224 AGCAGGCATG-TTGAACATG
1 AGTAGACATGCTT-AACATG
62267243 CAATCGGTAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
37 3 0.04
38 78 0.96
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (38 bp):
AGTAGACATGCTTAACATGTATTCGGTTCAACAGTAAC
Found at i:62272161 original size:2 final size:2
Alignment explanation
Indices: 62272154--62272180 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
62272144 TACTAACACG
62272154 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
62272181 GATGGAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62273843 original size:13 final size:13
Alignment explanation
Indices: 62273825--62273852 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62273815 CTGCAATTCT
62273825 AATTAATCTAAAC
1 AATTAATCTAAAC
62273838 AATTAATCTAAAC
1 AATTAATCTAAAC
62273851 AA
1 AA
62273853 GAAATAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
AATTAATCTAAAC
Found at i:62277486 original size:50 final size:50
Alignment explanation
Indices: 62277427--62277525 Score: 198
Period size: 50 Copynumber: 2.0 Consensus size: 50
62277417 ACGGTAGACG
62277427 TTCACGTCTAACCCTCTTCTGAGTTCCTCCAATGGATTTGTTTCTATCAT
1 TTCACGTCTAACCCTCTTCTGAGTTCCTCCAATGGATTTGTTTCTATCAT
62277477 TTCACGTCTAACCCTCTTCTGAGTTCCTCCAATGGATTTGTTTCTATCA
1 TTCACGTCTAACCCTCTTCTGAGTTCCTCCAATGGATTTGTTTCTATCA
62277526 CCAGTAACAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.18, C:0.28, G:0.12, T:0.41
Consensus pattern (50 bp):
TTCACGTCTAACCCTCTTCTGAGTTCCTCCAATGGATTTGTTTCTATCAT
Found at i:62279861 original size:25 final size:24
Alignment explanation
Indices: 62279831--62279878 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 24
62279821 TTTTTGGCCC
62279831 TAAAAAATATATAAA-TATTTAAATT
1 TAAAAAA-A-ATAAATTATTTAAATT
62279856 TAAAAAAAATAAATTTATTTAAA
1 TAAAAAAAATAAA-TTATTTAAA
62279879 ATTTTTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 1 0.05
25 15 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
TAAAAAAAATAAATTATTTAAATT
Found at i:62280931 original size:29 final size:30
Alignment explanation
Indices: 62280884--62280940 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
62280874 TTAAAAAATT
* * *
62280884 TCTAACTAAAATTTGAAT-ATTTCATAATG
1 TCTAAATAAAATATCAATAATTTCATAATG
*
62280913 TCTAAATAAAATATCAATAATTTTATAA
1 TCTAAATAAAATATCAATAATTTCATAA
62280941 ATATTAGCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 15 0.65
30 8 0.35
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (30 bp):
TCTAAATAAAATATCAATAATTTCATAATG
Found at i:62289111 original size:13 final size:13
Alignment explanation
Indices: 62289093--62289137 Score: 81
Period size: 13 Copynumber: 3.5 Consensus size: 13
62289083 ATGAGGTAAT
62289093 CCGTTGTACAGTC
1 CCGTTGTACAGTC
62289106 CCGTTGTACAGTC
1 CCGTTGTACAGTC
62289119 CCGTTGTACAGTC
1 CCGTTGTACAGTC
*
62289132 CTGTTG
1 CCGTTG
62289138 CAGTTATACT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.13, C:0.29, G:0.24, T:0.33
Consensus pattern (13 bp):
CCGTTGTACAGTC
Found at i:62292444 original size:22 final size:22
Alignment explanation
Indices: 62292404--62292445 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
62292394 ACAATGTGGT
*
62292404 AGAGGCACACGCCAGTGTGAAA
1 AGAGGCACAAGCCAGTGTGAAA
62292426 AGAGGCACAAGACCA-TGTGA
1 AGAGGCACAAG-CCAGTGTGA
62292446 CTAAGGCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.38, C:0.21, G:0.31, T:0.10
Consensus pattern (22 bp):
AGAGGCACAAGCCAGTGTGAAA
Found at i:62293206 original size:18 final size:17
Alignment explanation
Indices: 62293164--62293208 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
62293154 AAAGAAAAAG
62293164 AAAAAATAAAAATAAAT
1 AAAAAATAAAAATAAAT
*
62293181 AAATAAATAAAATATATAT
1 AAA-AAATAAAA-ATAAAT
*
62293200 ACAAAATAA
1 AAAAAATAA
62293209 CAAAAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 14 0.58
19 7 0.29
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAAAATAAAAATAAAT
Found at i:62293208 original size:22 final size:22
Alignment explanation
Indices: 62293181--62293222 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
62293171 AAAAATAAAT
62293181 AAATAA-ATAAAATATATATACA
1 AAATAACA-AAAATATATATACA
62293203 AAATAACAAAAATATATATA
1 AAATAACAAAAATATATATA
62293223 TATTAGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATAACAAAAATATATATACA
Found at i:62312766 original size:19 final size:19
Alignment explanation
Indices: 62312742--62312781 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
62312732 TGACTAAAAT
62312742 ATCATTGTTTTTACAAAGG
1 ATCATTGTTTTTACAAAGG
62312761 ATCATTGTTTTTACAAAGG
1 ATCATTGTTTTTACAAAGG
62312780 AT
1 AT
62312782 ATTATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (19 bp):
ATCATTGTTTTTACAAAGG
Found at i:62315769 original size:40 final size:39
Alignment explanation
Indices: 62315725--62315852 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
62315715 GCTCGATTGT
* *
62315725 CTTCGGGACATAGCCCGGTTATAGTGATTCGCAC-AATTGC
1 CTTCGGGACATAGCCCGGTT-TAGTAACTCGCACGAA-TGC
62315765 CTTCGGGA-ATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACA-TAGCCCGG-TTTAGTAACTCGCACGAATGC
* * * *
62315805 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACGAATGC
1 CTTCGGGACATAGCCCGG-TTTAGTAACTCGCACGAATGC
62315845 CTTCGGGA
1 CTTCGGGA
62315853 ATTGACTCAG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
39 1 0.01
40 71 0.93
41 4 0.05
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.27
Consensus pattern (39 bp):
CTTCGGGACATAGCCCGGTTTAGTAACTCGCACGAATGC
Found at i:62315866 original size:80 final size:81
Alignment explanation
Indices: 62315725--62315903 Score: 193
Period size: 80 Copynumber: 2.2 Consensus size: 81
62315715 GCTCGATTGT
* * * * * * *
62315725 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAATTGCCTTCGGGAATTAGCCCAGATTTAGT
* * *
62315790 AAC-TCGCACGAATGC
66 AACTTAGCACAAAAGC
* *
62315805 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACGAA-TGCCTTCGGGAATT-GACTCAGATTTA
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCAC-AATTGCCTTCGGGAATTAG-CCCAGATTTA
*
62315868 GTCACTTAGCACAAAAGC
64 GTAACTTAGCACAAAAGC
*
62315886 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
62315904 ACACCATTCG
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
79 1 0.01
80 53 0.65
81 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (81 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAATTGCCTTCGGGAATTAGCCCAGATTTAGT
AACTTAGCACAAAAGC
Found at i:62337520 original size:40 final size:40
Alignment explanation
Indices: 62337423--62337573 Score: 114
Period size: 40 Copynumber: 3.8 Consensus size: 40
62337413 AATTGAATGA
* * * **
62337423 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTT
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * * * *
62337463 TATCTGGGTTAAAACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
62337504 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
62337543 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
62337574 ACATGGTTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 14
0.75 0.14 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.06
40 74 0.84
41 5 0.06
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:62337587 original size:40 final size:40
Alignment explanation
Indices: 62337476--62337589 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 40
62337466 CTGGGTTAAA
* * * * *
62337476 ACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAG
1 ACCCGAAGGCATTTGTGCGAATGGTTATATCCGGGCTAAG
* ** *
62337516 ACCCGAAGGCATTCGTGCGAGA-CATTCTATCCGGGCTAAG
1 ACCCGAAGGCATTTGTGCGA-ATGGTTATATCCGGGCTAAG
62337556 ACCCGAAGGCATTTGTGC-ACATGGTTATATCCGG
1 ACCCGAAGGCATTTGTGCGA-ATGGTTATATCCGG
62337590 TTATGTTCCG
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
39 2 0.03
40 56 0.97
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ACCCGAAGGCATTTGTGCGAATGGTTATATCCGGGCTAAG
Found at i:62344812 original size:26 final size:26
Alignment explanation
Indices: 62344770--62344867 Score: 83
Period size: 30 Copynumber: 3.5 Consensus size: 26
62344760 GTTAGGTGGC
*
62344770 TAGGTTTTTTTAT-TTTTTTTT-GGT
1 TAGGTTTTTTTTTCTTTTTTTTGGGT
62344794 TAGGTTTCTTTTTTCTTTTTTTTTTTTGGGT
1 TAGGTTT-TTTTTTC----TTTTTTTTGGGT
62344825 TAGGTTTTTCTTTTTCTTTTTTTTTTAGGGT
1 TAGG-TTTT-TTTTTC--TTTTTTTT-GGGT
62344856 TAGGTTTTTTTT
1 TAGGTTTTTTTT
62344868 GGGGGGGCTT
Statistics
Matches: 63, Mismatches: 1, Indels: 15
0.80 0.01 0.19
Matches are distributed among these distances:
24 7 0.11
25 5 0.08
29 4 0.06
30 22 0.35
31 16 0.25
32 9 0.14
ACGTcount: A:0.06, C:0.04, G:0.16, T:0.73
Consensus pattern (26 bp):
TAGGTTTTTTTTTCTTTTTTTTGGGT
Found at i:62344820 original size:31 final size:30
Alignment explanation
Indices: 62344774--62344867 Score: 122
Period size: 31 Copynumber: 3.1 Consensus size: 30
62344764 GGTGGCTAGG
*
62344774 TTTTT-TTATTTTTTTTT-GGTTAGGTTTCT
1 TTTTTCTTTTTTTTTTTTGGGTTAGGTTT-T
62344803 TTTTTCTTTTTTTTTTTTGGGTTAGGTTTT
1 TTTTTCTTTTTTTTTTTTGGGTTAGGTTTT
*
62344833 TCTTTT-TCTTTTTTTTTTAGGGTTAGGTTTT
1 T-TTTTCT-TTTTTTTTTTTGGGTTAGGTTTT
62344864 TTTT
1 TTTT
62344868 GGGGGGGCTT
Statistics
Matches: 59, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
29 5 0.08
30 17 0.29
31 37 0.63
ACGTcount: A:0.05, C:0.04, G:0.15, T:0.76
Consensus pattern (30 bp):
TTTTTCTTTTTTTTTTTTGGGTTAGGTTTT
Found at i:62345719 original size:30 final size:30
Alignment explanation
Indices: 62345683--62345744 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
62345673 TTTTGAAAAA
62345683 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
62345713 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
62345743 CA
1 CA
62345745 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:62345920 original size:86 final size:89
Alignment explanation
Indices: 62345767--62345933 Score: 175
Period size: 85 Copynumber: 1.9 Consensus size: 89
62345757 TTTTTTGAAA
* * *
62345767 AAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTC-AATATGAG
1 AAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCATATGAG
62345831 TTGA-TTTTTG-AAAACAGAA-TT
66 TTGATTTTTTGAAAAACAGAACTT
* ** * * * *
62345852 GAAAAACAGATTTTGAAAATACCTC-GACATGTGA-CCGAGGCTCAACTCACATCTCGCAATGTG
1 AAAAAACAGAAATTGAAAATACCTCAG-CACGTGAGCCAAGGCTCAACTCACCTCTCGC-ATATG
62345915 AGTTGATTTTTTTGAAAAA
64 AGTTGA-TTTTTTGAAAAA
62345934 TATAAATTGA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
84 20 0.30
85 27 0.40
86 10 0.15
88 6 0.09
89 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (89 bp):
AAAAAACAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCATATGAG
TTGATTTTTTGAAAAACAGAACTT
Found at i:62346236 original size:71 final size:72
Alignment explanation
Indices: 62345864--62346762 Score: 524
Period size: 71 Copynumber: 11.8 Consensus size: 72
62345854 AAAACAGATT
* * * *
62345864 TTGAAAATACCTC-GACATGTGACCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTT
1 TTGAAAATACCTCAG-CGTGT-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
* *
62345928 GAAAAATATAAA
64 G---AACAGAAA
* * *
62345940 TTGAAAAAATACCTCATGTGTGAT-CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTG--AAAATACCTCA-GCGTG-TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
62346004 TTGAAAGACAGAAA
62 TTG--A-ACAGAAA
* ** *
62346018 TTGAAAATAGCTCAGCGCATGAGCCAAGG-TCAACTCACCTCTCGCAATAT-AGTTGA-TTTTTT
1 TTGAAAATACCTCAGCG--TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
62346080 GAAAACAGAAA
64 G--AACAGAAA
* ** * ***
62346091 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA-TTTTGAAA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
62346154 ACAGAAA
66 ACAGAAA
*
62346161 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTT-
*
62346226 AAAAAATTGAAAATGAAA
62 ------TTGAACA-GAAA
* *
62346244 TTGAAAATACCTC-GACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 TTGAAAATACCTCAG-CGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
62346307 TGAAACAGAAA
63 TG-AACAGAAA
*
62346318 TTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
*
62346382 ACAAAAAA
66 AC-AGAAA
** *** * * * * *
62346390 TTGAAAA-A-CGGAAATTGAAATACCTCGGCGTGTGACTGAGGCTCAACTCACTCGCAATACGAG
1 TTGAAAATACCTCAGCGTG---T--C-C--CGAG-G-CTCA-ACTC-AC-CTCTCGCAATATGAG
62346453 TTGA-TTTTTTGACAACAGAAA
53 TTGATTTTTTTG--AACAGAAA
* *
62346474 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTG
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG
62346539 AAAGACAGAAA
65 --A-ACAGAAA
** *** * * * * * * *
62346550 TTGAAAA-A-CGGAAATTGAAAATACCTCG-GCGTGTGACCTGAGGCTCAACTCGC-CTCTCGCA
1 TTGAAAATACCTCAGCGTG----T-CC-CGAG-G-CTCAACTCA--C-C-TCTCGCAATAT-G-A
* * ** **
62346611 ATACGAGTTGATTAAAACAGAAA
52 GT-TGA-TTTTTTTGAACAGAAA
62346634 TTGAAAATACCTCAGCGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGA
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-
62346696 AACAGAAA
65 AACAGAAA
* *
62346704 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
62346763 GAAAAAGTAA
Statistics
Matches: 642, Mismatches: 106, Indels: 153
0.71 0.12 0.17
Matches are distributed among these distances:
69 3 0.00
70 66 0.10
71 78 0.12
72 69 0.11
73 64 0.10
74 31 0.05
75 29 0.05
76 51 0.08
77 15 0.02
78 63 0.10
79 9 0.01
80 6 0.01
81 13 0.02
82 7 0.01
83 32 0.05
84 44 0.07
85 46 0.07
86 10 0.02
87 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (72 bp):
TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
ACAGAAA
Found at i:62346289 original size:227 final size:221
Alignment explanation
Indices: 62345888--62346762 Score: 660
Period size: 230 Copynumber: 3.8 Consensus size: 221
62345878 ACATGTGACC
* * *
62345888 GAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACC
1 GAGGCTCAACTCACATCTCGCAATATGAGTTGA---TTTTGAAAAACAGAAATTG-AAAAATACC
* * *
62345953 TCATGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
62 TCATGCGTGATCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAAAGAAA
*
62346018 TTGAAAATAGCTCAGCGCATGAGCCAAGGTCAACTCACCTCTCGCAATAT-AGTTGATTTTTTGA
127 TTGAAAATACCTCAGCGCATGAGCCAAGGTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-
*
62346082 AAACAGAAATTGAAAATACCTCAACGTGTCTT
191 AAACAGAAATTG-AAATACCTCAACGTGTCCT
* *
62346114 GAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTG-AAAACAGAAATTG-AAATTACCTCA-
1 GAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAAATACCTCAT
*
62346175 GCGTG-TCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAAAATTGAAAA
66 GCGTGAT-CCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG---AAA--G-AAA
** * **
62346239 TGAAATTGAAAATACCTC-GACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
123 -GAAATTGAAAATACCTCAG-CGCATGAGCCAAGG-TCAACTCACCTCTCGCAATATGAGTTGAT
*
62346303 TTTTTGAAACAGAAATTGAAATACCTCAGCGTGTCCT
185 TTTTTGAAACAGAAATTGAAATACCTCAACGTGTCCT
* * **
62346340 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAACAAAAAATTGAAAAACGGAAAT
1 GAGGCTCAACTCACATCTCGCAATATGAGTTGA---TTTTG-A-AAAACA--G--AAATTG-AA-
* * * *
62346405 TGAAATACCTC-GGCGTG-TGACTGAGGCTCAACTCA---CTCGCAATACGAGTTGA-TTTTTTG
55 --AAATACCTCATGCGTGAT--CCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * * *
62346464 ACA-ACAGAAATTGAAATTACCTCAGCG--TG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
116 AAAGAAAGAAATTGAAAATACCTCAGCGCATGAGCC-AAGG-TCAACTCACCTCTCGCAATATGA
**
62346525 GTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCT
179 GTTGA--TTTTTTG-AA-AC------------A--GAAATTG-AAATACCTCAACGTGT--CCT
* * *
62346589 GAGGCTCAACTCGCCTCTCGCAATACGAGTTGA--TT--AAAACAGAAATTG-AAAATACCTCA-
1 GAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAAATACCTCAT
* *
62346648 GCGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AA-ACAGAAATTGA
66 GCGTGATCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAAAGAAATTGA
* * *
62346708 AATTACCTCAGCG--TG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
131 AAATACCTCAGCGCATGAGCC-AAGG-TCAACTCACCTCTCGCAATATGAGTTGATTT
62346763 GAAAAAGTAA
Statistics
Matches: 554, Mismatches: 38, Indels: 112
0.79 0.05 0.16
Matches are distributed among these distances:
217 1 0.00
218 37 0.07
219 18 0.03
221 11 0.02
222 8 0.01
224 1 0.00
225 20 0.04
226 68 0.12
227 53 0.10
228 65 0.12
230 94 0.17
231 42 0.08
232 2 0.00
233 5 0.01
234 1 0.00
235 3 0.01
236 4 0.01
237 4 0.01
238 8 0.01
239 1 0.00
240 21 0.04
242 14 0.03
243 14 0.03
244 3 0.01
246 7 0.01
247 15 0.03
249 34 0.06
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.29
Consensus pattern (221 bp):
GAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAAATACCTCAT
GCGTGATCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAAAGAAATTGA
AAATACCTCAGCGCATGAGCCAAGGTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACA
GAAATTGAAATACCTCAACGTGTCCT
Found at i:62346456 original size:84 final size:84
Alignment explanation
Indices: 62346309--62346479 Score: 240
Period size: 86 Copynumber: 2.0 Consensus size: 84
62346299 TGATTTTTTG
* *
62346309 AAACAGAAATTGAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAACAGAAATTGAAATACCTCAGCGTGTACTGAGGCTCAACTCA-C-CTCGCAATACGAGTTGA-
62346374 TTTTTTGAACAA-A-AAATTGAA
63 TTTTTTG-ACAACAGAAATTGAA
* *
62346395 AAACGGAAATTGAAATACCTCGGCGTGTGACTGAGGCTCAACTCA-CTCGCAATACGAGTTGATT
1 AAACAGAAATTGAAATACCTCAGCGTGT-ACTGAGGCTCAACTCACCTCGCAATACGAGTTGATT
62346459 TTTTGACAACAGAAATTGAA
65 TTTTGACAACAGAAATTGAA
62346479 A
1 A
62346480 TTACCTCAGC
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
82 4 0.05
83 8 0.10
84 25 0.32
86 26 0.33
87 15 0.19
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (84 bp):
AAACAGAAATTGAAATACCTCAGCGTGTACTGAGGCTCAACTCACCTCGCAATACGAGTTGATTT
TTTGACAACAGAAATTGAA
Found at i:62346515 original size:313 final size:312
Alignment explanation
Indices: 62346081--62346989 Score: 979
Period size: 313 Copynumber: 3.0 Consensus size: 312
62346071 TGATTTTTTG
*
62346081 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGA
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA-TCTCGCAATACGAGTTGA
62346146 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
65 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
* *
62346211 AGTTGATTTTTTTTG-A-A-A-AAATTG-AAAA-TGAAATTGAAAATACCTCGACGTGTGATCTG
130 AGTTGATTTTTTTTGAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGACCTG
* *
62346270 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAGAAATTG-AAATACCTCAGCG
195 AGGCTCAACTCACCTCTCGCAATACGAGTTGA----TTAAAACAGAAATTGAAAATACCTCAGCG
62346334 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AACAAAAAATTGA
256 TG-CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAC-AAAAATTGA
* **
62346394 AAAACGGAAATTG-AAATACCTCGGCGTGTGAC-TGAGGCTCAACTCA-CTCGCAATACGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATCTCGCAATACGAGTTG
* *
62346456 ATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
64 A--TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
*
62346521 ATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA
127 ATGAGTTGATTTTTTTTG-AAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGA
*
62346586 CCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTAAAACAGAAATTGAAAATACCTCAGCG
191 CCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTAAAACAGAAATTGAAAATACCTCAGCG
62346651 TGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT----------TTG-
256 TGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGA
* * * *
62346695 -AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA--TCTCGCAATACGAGTTG
* **
62346759 A-TTTGAAAA-AG----TAAAATTA--AAAG-GT-T--C-A----C--CT-ACCTCTCGCAATAT
64 ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
* * * *
62346804 GAGTTGA-TTC--TTGAACA-ACGTAAATTG-AAAACAGAAATTGAAAATACCTC-A-GCGTGAC
129 GAGTTGATTTTTTTTGAAGACA-G-AAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGAC
* *
62346862 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAATTGAAAATACCTCAG
192 CTGAGGCTCAACTCACCTCTCGCAATACGAGTTG--ATTAAAACA-GAAATTGAAAATACCTCAG
* ***
62346927 CGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-A
254 CGTG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGA
62346987 AAA
1 AAA
62346990 GGCTTAACTC
Statistics
Matches: 526, Mismatches: 32, Indels: 96
0.80 0.05 0.15
Matches are distributed among these distances:
275 38 0.07
276 1 0.00
277 35 0.07
278 31 0.06
280 36 0.07
281 21 0.04
282 4 0.01
284 1 0.00
288 1 0.00
291 1 0.00
292 4 0.01
293 4 0.01
295 7 0.01
299 3 0.01
300 32 0.06
301 14 0.03
302 3 0.01
303 16 0.03
311 16 0.03
312 18 0.03
313 104 0.20
314 1 0.00
315 34 0.06
316 17 0.03
317 16 0.03
318 6 0.01
319 4 0.01
320 58 0.11
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (312 bp):
AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCGCAATACGAGTTGAT
TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTTGAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGACGTGTGACCTGA
GGCTCAACTCACCTCTCGCAATACGAGTTGATTAAAACAGAAATTGAAAATACCTCAGCGTGCCG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACAAAAATTGA
Found at i:62346551 original size:70 final size:70
Alignment explanation
Indices: 62346400--62346535 Score: 186
Period size: 70 Copynumber: 1.9 Consensus size: 70
62346390 TTGAAAAACG
*
62346400 GAAATTGAAA-TACCTCGGCGTGTGACTGAGGCTCAACTCACTCGCAATACGAGTTGATTTTTTG
1 GAAA-TGAAATTACCTCAGCGTGTGACTGAGGCTCAACTCACTCGCAATACGAGTTGATTTTTTG
62346464 ACAACA
65 ACAACA
* *
62346470 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAA-TGAAATTACCTCAGCGTGTGACTGAGGCTCAACTCA---CTCGCAATACGAGTTGATTTT
62346534 TT
62 TT
62346536 TTGAAAGACA
Statistics
Matches: 59, Mismatches: 3, Indels: 5
0.88 0.04 0.07
Matches are distributed among these distances:
70 25 0.42
71 12 0.20
73 22 0.37
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (70 bp):
GAAATGAAATTACCTCAGCGTGTGACTGAGGCTCAACTCACTCGCAATACGAGTTGATTTTTTGA
CAACA
Found at i:62346555 original size:14 final size:14
Alignment explanation
Indices: 62346536--62346570 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
62346526 TTGATTTTTT
*
62346536 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
62346550 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
62346564 TTGAAAA
1 TTGAAAA
62346571 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:62346753 original size:72 final size:71
Alignment explanation
Indices: 62346554--62346989 Score: 336
Period size: 70 Copynumber: 6.2 Consensus size: 71
62346544 CAGAAATTGA
* * * *
62346554 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
62346619 TGA---TT
64 TGATTTTT
62346624 AAAACAGAAATTGAAAATACCTCAGCGTG-CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
62346687 ATTTTTT
66 A-TTTTT
* *
62346694 GAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
62346759 A-TTTG
66 ATTTTT
* * *** * ** * * * *
62346764 AAAA-AGTAAAATT-AAAAGGTTCACCT-A-CCTCT-C-GCAATATGAGTTGA-TTCTTG-AACA
1 AAAACAG--AAATTGAAAA---T-ACCTCAGCGTGTCCTG-AGGCTCAACTCACCTCTCGCAATA
** *
62346821 --ACG-T-AAATTG
59 TGA-GTTGATTTTT
*
62346831 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
**
62346896 A-AATT
66 ATTTTT
* * * *
62346901 AAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTT
1 AAAACA-GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
62346966 GATTTTGA
65 GATTTT-T
*
62346974 AAAACAAAAATT-AAAA
1 AAAACAGAAATTGAAAA
62346990 GGCTTAACTC
Statistics
Matches: 292, Mismatches: 44, Indels: 59
0.74 0.11 0.15
Matches are distributed among these distances:
63 4 0.01
64 2 0.01
65 2 0.01
66 43 0.15
67 20 0.07
68 6 0.02
69 6 0.02
70 80 0.27
71 74 0.25
72 43 0.15
73 8 0.03
74 4 0.01
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (71 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTT
Found at i:62346981 original size:71 final size:70
Alignment explanation
Indices: 62346550--62346982 Score: 324
Period size: 71 Copynumber: 6.2 Consensus size: 70
62346540 AAGACAGAAA
* * * * *
62346550 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATAC
1 TTGAAAAAC-AAAATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATAT
62346615 GAGTTGA-
63 GAGTTGAT
62346622 TT--AAAACAGAAATTGAAAATACCTCAGCGTG--CCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACA-AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
62346683 GTTGATT
65 GTTGA-T
*** * * *
62346690 TTTTGAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACA-AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
62346755 GTTGAT
65 GTTGAT
* * * *** * ** * * *
62346761 TTGAAAAAGTAAAATT-AAAAGGTTCACCT-A-CCT--CTCGCAATATGAGTTGA-TTCTTG-AA
1 TTGAAAAA-CAAAATTGAAAA---T-ACCTCAGCGTGACCCG-AGGCTCAACTCACCTCTCGCAA
* * *
62346819 CA--ACG-TAAA
60 TATGA-GTTGAT
*
62346828 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACA-AAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
*
62346892 GTTGAAA
65 GTTG-AT
* *
62346899 TT-AAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGAAAA-ACAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGA
62346963 GTTGATT
65 GTTGA-T
62346970 TTGAAAAACAAAA
1 TTGAAAAACAAAA
62346983 ATTAAAAGGC
Statistics
Matches: 284, Mismatches: 47, Indels: 61
0.72 0.12 0.16
Matches are distributed among these distances:
63 4 0.01
64 2 0.01
65 3 0.01
66 46 0.16
67 16 0.06
68 9 0.03
69 4 0.01
70 62 0.22
71 86 0.30
72 46 0.16
73 2 0.01
74 4 0.01
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (70 bp):
TTGAAAAACAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGAT
Found at i:62347132 original size:71 final size:71
Alignment explanation
Indices: 62346989--62347252 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
62346979 AAAAATTAAA
* * * * *
62346989 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
62347052 GCCCCG
66 GCCCCG
* *
62347058 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
62347123 GTCTTG
66 GCCCCG
* * *
62347129 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
62347192 TGCCCCG
65 TGCCCCG
*
62347199 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
62347253 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:62347210 original size:70 final size:69
Alignment explanation
Indices: 62346989--62347252 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
62346979 AAAAATTAAA
* ** * * *
62346989 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
62347054 CCCG
66 CCCG
* * *
62347058 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
62347123 GTCTTG
64 GCCCCG
* *
62347129 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
62347194 CCCCG
65 CCCCG
*
62347199 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
62347253 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:62347223 original size:263 final size:255
Alignment explanation
Indices: 62346828--62347418 Score: 1020
Period size: 256 Copynumber: 2.3 Consensus size: 255
62346818 ACAACGTAAA
* * * * * *
62346828 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
62346893 TTGAAATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
66 TTG--ATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAA
62346958 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
129 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
62347023 TAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
194 T-----A-AAACT-AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
62347088 GATT
252 GATT
62347092 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
62347157 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACAC-AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
62347222 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
130 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
62347287 AAAACTAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 AAAACTAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
*
62347348 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
62347413 TTGATT
66 TTGATT
62347419 TTCCTTGAAA
Statistics
Matches: 318, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
256 124 0.39
257 5 0.02
258 1 0.00
262 10 0.03
263 116 0.36
264 62 0.19
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (255 bp):
TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
AAACTAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Done.