Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 200 of 318
Found at i:62699994 original size:20 final size:20
Alignment explanation
Indices: 62699949--62699995 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
62699939 AAAAGAAGAG
* *
62699949 GAAAAG-ATATGGATGGCAA
1 GAAAAGAATATGGAAGGAAA
* *
62699968 TAGAAGAATATGGAAGGAAA
1 GAAAAGAATATGGAAGGAAA
62699988 GAAAAGAA
1 GAAAAGAA
62699996 GAGAAGAGAT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.55, C:0.02, G:0.30, T:0.13
Consensus pattern (20 bp):
GAAAAGAATATGGAAGGAAA
Found at i:62704110 original size:45 final size:46
Alignment explanation
Indices: 62704028--62704121 Score: 163
Period size: 45 Copynumber: 2.0 Consensus size: 46
62704018 TGTTATGTTG
62704028 GTACATCATGGGAGGAAAAAAAATAAATTAATGGTTATGGGTAATAAA
1 GTACATCATGGGAGG--AAAAAATAAATTAATGGTTATGGGTAATAAA
62704076 GTACATCATGGGAGG-AAAAATAAATTAATGGTTATGGGTAATAAA
1 GTACATCATGGGAGGAAAAAATAAATTAATGGTTATGGGTAATAAA
62704121 G
1 G
62704122 AAATGAAGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
45 31 0.67
48 15 0.33
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (46 bp):
GTACATCATGGGAGGAAAAAATAAATTAATGGTTATGGGTAATAAA
Found at i:62704705 original size:2 final size:2
Alignment explanation
Indices: 62704698--62704723 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
62704688 CGGCTCTAGC
62704698 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
62704724 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62709445 original size:27 final size:28
Alignment explanation
Indices: 62709415--62709484 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
62709405 ATAGTGAGTC
* *
62709415 CGCACATTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
62709442 CGCACACTTAGTGCTGCATGATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
62709470 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62709485 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 19 0.50
28 19 0.50
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:62709478 original size:28 final size:27
Alignment explanation
Indices: 62709415--62709485 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 27
62709405 ATAGTGAGTC
* **
62709415 CGCACATTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTGCATAATCAACT
*
62709442 CGCACACTTAGTGCTGCATGATCAAACT
1 CGCACACTTAGTGCTGCATAATC-AACT
62709470 CGCACACTTAGTGCTG
1 CGCACACTTAGTGCTG
62709486 TACAAGTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 19 0.49
28 20 0.51
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTGCATAATCAACT
Found at i:62712490 original size:40 final size:40
Alignment explanation
Indices: 62712396--62712613 Score: 222
Period size: 40 Copynumber: 5.4 Consensus size: 40
62712386 GAATGGTGTT
* * *
62712396 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAAC
* * *
62712437 TGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAAC
1 CGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* ** *
62712477 CGGGTTAAGTCCCGAAGGCATTTGTGAAAGTTACCAAAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * * *
62712517 CGGGTTAAGTCCTGAAGGCATTCGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
* * * * * *
62712557 CGGGCTAATTCCTGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
*
62712597 CGGGCTATGTCCCGAAG
1 CGGGCTAAGTCCCGAAG
62712614 ACAATCGAGC
Statistics
Matches: 148, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
40 125 0.84
41 23 0.16
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAAC
Found at i:62720500 original size:40 final size:40
Alignment explanation
Indices: 62720404--62720621 Score: 260
Period size: 40 Copynumber: 5.5 Consensus size: 40
62720394 CGAATGGTGT
* * * *
62720404 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
62720445 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
62720485 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
62720525 CCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
62720564 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
62720604 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
62720622 ACAATCGAGC
Statistics
Matches: 157, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 35 0.22
40 97 0.62
41 25 0.16
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:62720578 original size:79 final size:80
Alignment explanation
Indices: 62720404--62720621 Score: 267
Period size: 79 Copynumber: 2.7 Consensus size: 80
62720394 CGAATGGTGT
* * * * * *
62720404 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTT
62720469 GTGCGAGTTACCAAAA
65 GTGCGAGTTACCAAAA
* * *
62720485 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA-TTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTTG
* *
62720549 TGCGAGTTACTAAAG
66 TGCGAGTTACCAAAA
* * * * * *
62720564 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAG
62720622 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
79 65 0.55
80 27 0.23
81 26 0.22
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAACCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACCAAAA
Found at i:62720617 original size:119 final size:121
Alignment explanation
Indices: 62720404--62720621 Score: 298
Period size: 119 Copynumber: 1.8 Consensus size: 121
62720394 CGAATGGTGT
* * *
62720404 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACTAAAGCCGGGTCAATTCCCGAAGGCAATT
* * *
62720469 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
62720525 CCGGGTTAAGTCCCGAAGGC-ATTGTGC-GAGTTACTAAAGCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACTAAAGCCGGGTC-AATTCCCGAAGGCAAT
* * *
62720587 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
62720622 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
118 1 0.01
119 58 0.69
120 6 0.07
121 19 0.23
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCTATTGTGCTAAGTGACTAAAGCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:62720642 original size:40 final size:40
Alignment explanation
Indices: 62720564--62720647 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
62720554 GTTACTAAAG
* * *
62720564 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
62720604 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
62720644 CCGG
1 CCGG
62720648 TTAAATTCGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:62728527 original size:40 final size:40
Alignment explanation
Indices: 62728472--62728681 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
62728462 AACATTGGAA
62728472 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
62728512 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
62728552 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
62728592 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
62728631 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
62728672 CTATATCCGG
1 ATATATCCGG
62728682 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:62736662 original size:40 final size:40
Alignment explanation
Indices: 62736607--62736816 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
62736597 AACATTGGAA
62736607 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
62736647 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
62736687 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
62736727 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
62736766 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
62736807 CTATATCCGG
1 ATATATCCGG
62736817 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:62741683 original size:34 final size:34
Alignment explanation
Indices: 62741636--62741703 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
62741626 TTTGAAGGGA
62741636 GTGGAAGAAGGTGTGCCGATTTGGGCCTCTCACT
1 GTGGAAGAAGGTGTGCCGATTTGGGCCTCTCACT
*
62741670 GTGGAAGAGGGTGTGCCGATTTGGGCCTCTCACT
1 GTGGAAGAAGGTGTGCCGATTTGGGCCTCTCACT
62741704 CCTTGCAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.16, C:0.21, G:0.37, T:0.26
Consensus pattern (34 bp):
GTGGAAGAAGGTGTGCCGATTTGGGCCTCTCACT
Found at i:62742999 original size:12 final size:12
Alignment explanation
Indices: 62742982--62743006 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62742972 ATGTAAGTGA
62742982 TCTTGATGATTT
1 TCTTGATGATTT
62742994 TCTTGATGATTT
1 TCTTGATGATTT
62743006 T
1 T
62743007 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:62751509 original size:6 final size:6
Alignment explanation
Indices: 62751491--62751550 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
62751481 AAGAAACATT
* *
62751491 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
62751540 ATCAAA ATCAG
1 ATCAGA ATCAG
62751551 TAACAGGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 37 0.82
7 4 0.09
8 1 0.02
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:62751534 original size:25 final size:24
Alignment explanation
Indices: 62751505--62751556 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
62751495 GAACTAGAAT
* **
62751505 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAAAATCA-GTAA
62751530 CAGAATCAAAATCAAAATCAGTAA
1 CAGAATCAAAATCAAAATCAGTAA
62751554 CAG
1 CAG
62751557 GTAACAGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.50, C:0.17, G:0.15, T:0.17
Consensus pattern (24 bp):
CAGAATCAAAATCAAAATCAGTAA
Found at i:62751543 original size:31 final size:31
Alignment explanation
Indices: 62751500--62751579 Score: 124
Period size: 31 Copynumber: 2.5 Consensus size: 31
62751490 TATCAGAACT
* *
62751500 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGTAACAGGTAAC
*
62751531 AGAATCAAAATCAAAATCAGTAACAGGTAAC
1 AGAATCAAAATCAGAATCAGTAACAGGTAAC
62751562 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
62751580 GTGAATGCAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
31 34 0.77
32 10 0.23
ACGTcount: A:0.53, C:0.15, G:0.15, T:0.17
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGTAACAGGTAAC
Found at i:62751758 original size:27 final size:26
Alignment explanation
Indices: 62751716--62751817 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
62751706 GCTCAGTTAT
* *
62751716 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
62751743 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
62751769 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
62751797 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
62751818 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:62752001 original size:22 final size:22
Alignment explanation
Indices: 62751976--62752040 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
62751966 GCAAATACGT
* *
62751976 TTGGCATATAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
62751998 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
62752020 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
62752041 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:62752515 original size:27 final size:27
Alignment explanation
Indices: 62752468--62752682 Score: 261
Period size: 27 Copynumber: 8.0 Consensus size: 27
62752458 GGGCAAAATT
* * * *
62752468 GTAATTTTACCCCAC-GAGGGTATCTCG
1 GTAATTCTACCCTACAG-GGGTATTTCA
* *
62752495 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * **
62752522 GTATTTCTACCCTACAAGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62752549 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
62752576 ATAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
62752603 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
62752630 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
62752657 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
62752683 GATAATTTTG
Statistics
Matches: 161, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 160 0.99
28 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:62752611 original size:81 final size:81
Alignment explanation
Indices: 62752496--62752689 Score: 289
Period size: 81 Copynumber: 2.4 Consensus size: 81
62752486 GGTATCTCGG
** * *
62752496 TAATTCTACCCTATAGGGGTATTTTAGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
*
62752561 TACAGGGGTATTTTAA
66 TACAGGGGTATTTCAA
* *
62752577 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
* *
62752642 TATAGGGGTATTTCAG
66 TACAGGGGTATTTCAA
* *
62752658 TAATTCTACCCTACAGGGGTATTTCGATAATT
1 TAATTCTACCCTATAGGGGTATTTCGGTAATT
62752690 TTGTAAATCA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (81 bp):
TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCC
TACAGGGGTATTTCAA
Found at i:62752689 original size:54 final size:54
Alignment explanation
Indices: 62752485--62752681 Score: 313
Period size: 54 Copynumber: 3.6 Consensus size: 54
62752475 TACCCCACGA
* * * * *
62752485 GGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTAGTATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG
* *
62752539 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG
*
62752593 GGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG
*
62752647 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
62752682 CGATAATTTT
Statistics
Matches: 131, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 131 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAG
Found at i:62752715 original size:81 final size:81
Alignment explanation
Indices: 62752496--62752716 Score: 187
Period size: 81 Copynumber: 2.7 Consensus size: 81
62752486 GGTATCTCGG
* * * ** ****
62752496 TAATTCTACCCTATAGGGGTATTT-TAGTATTTCTACCCTACAAGGGTATTTTGGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACAATACAAGGGTAAAACGGTAATTCTACC
*
62752560 CTACAGGGGTATTTTAA
65 CTACAGGGGTATTTCAA
* * ** * *****
62752577 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGATAATTCTACAATACAAGGGTAAAACGGTAATTCTACCC
* *
62752642 TATAGGGGTATTTCAG
66 TACAGGGGTATTTCAA
*
62752658 TAATTCTACCCTACAGGGGTATTTCGATAATTTTGTA-AAT-CAAGGGTAAAACGGTAATT
1 TAATTCTACCCTACAGGGGTATTTCGATAA--TTCTACAATACAAGGGTAAAACGGTAATT
62752717 TTGTAAACTG
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
81 112 0.96
82 1 0.01
83 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGATAATTCTACAATACAAGGGTAAAACGGTAATTCTACCC
TACAGGGGTATTTCAA
Found at i:62752960 original size:108 final size:108
Alignment explanation
Indices: 62752807--62753020 Score: 383
Period size: 108 Copynumber: 2.0 Consensus size: 108
62752797 TTCACAAATC
* *
62752807 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAATGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTA
* *
62752872 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
66 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTGGTAAACCA
62752915 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTA
1 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTA
*
62752980 GTAATTTTACAAACTAAGGGTATTTTGGTAATTTGGTAAAC
66 GTAATTTTACAAACCAAGGGTATTTTGGTAATTTGGTAAAC
62753021 TAAAGTATTC
Statistics
Matches: 101, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (108 bp):
AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTA
GTAATTTTACAAACCAAGGGTATTTTGGTAATTTGGTAAACCA
Found at i:62753020 original size:54 final size:54
Alignment explanation
Indices: 62752807--62753013 Score: 342
Period size: 54 Copynumber: 3.8 Consensus size: 54
62752797 TTCACAAATC
* *
62752807 AGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
* * *
62752861 ATGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
*
62752915 AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
* *
62752969 AGGGTATTTTAGTAATTTTACAAACTAAGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
62753014 GGTAAACTAA
Statistics
Matches: 141, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 141 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
Found at i:62753023 original size:27 final size:27
Alignment explanation
Indices: 62752728--62753013 Score: 304
Period size: 27 Copynumber: 10.6 Consensus size: 27
62752718 TGTAAACTGG
* ** *
62752728 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
*** *** *
62752755 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
62752782 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
62752808 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
62752835 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
62752862 TGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
**
62752889 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
62752916 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
62752943 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
62752970 GGGTATTTTAGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
62752997 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
62753014 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 38, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
26 21 0.10
27 199 0.90
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:62759424 original size:27 final size:27
Alignment explanation
Indices: 62759394--62759445 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
62759384 CCCATACTGA
**
62759394 TAAAATGACGGTTATACCCCTATGAGG
1 TAAAATGACGGACATACCCCTATGAGG
*
62759421 TAAAATGACTGACATACCCCTATGA
1 TAAAATGACGGACATACCCCTATGA
62759446 TATGTATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (27 bp):
TAAAATGACGGACATACCCCTATGAGG
Found at i:62764658 original size:39 final size:39
Alignment explanation
Indices: 62764597--62764765 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 39
62764587 GCTAAAGTTC
* *
62764597 AAACGCTGCTAAAGAACGAGCATTAGCGGCGCTTTTAAA
1 AAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTAAA
* *
62764636 AAATGCCGCTAAAGATCGAGCATTAGCGACGCTTATTAAA
1 AAACGCCGCTAAAGATCGAGCATTAGCGGCGCTT-TTAAA
* * * *
62764676 AAACGCCGCTATAGGTTC-AACTTTAGCGGCGCTTTTCAAA
1 AAACGCCGCTA-AAGATCGAGCATTAGCGGCGCTTTT-AAA
* * * * * * * *
62764716 AAAGCGCTGCTAATGCTTGATCTTTAGCAGCGCTTTACAAA
1 AAA-CGCCGCTAAAGATCGAGCATTAGCGGCGCTTT-TAAA
62764757 AAACGCCGC
1 AAACGCCGC
62764766 AAAAAAATTA
Statistics
Matches: 106, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 32 0.30
40 42 0.40
41 32 0.30
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (39 bp):
AAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTTAAA
Found at i:62764686 original size:40 final size:39
Alignment explanation
Indices: 62764597--62764686 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
62764587 GCTAAAGTTC
* *
62764597 AAACGCTGCTAAAGAACGAGCATTAGCGGCGCTTTTAAA
1 AAACGCCGCTAAAGAACGAGCATTAGCGACGCTTTTAAA
* *
62764636 AAATGCCGCTAAAGATCGAGCATTAGCGACGCTTATTAAA
1 AAACGCCGCTAAAGAACGAGCATTAGCGACGCTT-TTAAA
62764676 AAACGCCGCTA
1 AAACGCCGCTA
62764687 TAGGTTCAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 30 0.67
40 15 0.33
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.20
Consensus pattern (39 bp):
AAACGCCGCTAAAGAACGAGCATTAGCGACGCTTTTAAA
Found at i:62765147 original size:15 final size:14
Alignment explanation
Indices: 62765129--62765163 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
62765119 ATTATTTTAA
*
62765129 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
62765143 GGGTTTAGGGATTAT
1 -GGTTTAGGGATTAT
62765158 GGTTTA
1 GGTTTA
62765164 AGGGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:62765149 original size:22 final size:22
Alignment explanation
Indices: 62765079--62765168 Score: 58
Period size: 22 Copynumber: 4.1 Consensus size: 22
62765069 TTATAGTTTA
* *
62765079 GGTTTACGGTATATGG-TTAAG
1 GGTTTAAGGTTTATGGATTAAG
* **
62765100 GGTTTAATGTTTAT-GAGTTATT
1 GGTTTAAGGTTTATGGA-TTAAG
** *
62765122 ATTTTAAGGTTTATGGATTATG
1 GGTTTAAGGTTTATGGATTAAG
* * *
62765144 GGTTTAGGGATTATGGTTTAAG
1 GGTTTAAGGTTTATGGATTAAG
62765166 GGT
1 GGT
62765169 GGTTTAAGGG
Statistics
Matches: 51, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
20 1 0.02
21 11 0.22
22 37 0.73
23 2 0.04
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTATGGATTAAG
Found at i:62765185 original size:25 final size:25
Alignment explanation
Indices: 62765144--62765191 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
62765134 ATGGATTATG
62765144 GGTTTAGGGATTATGGTTTAAGGGT
1 GGTTTAGGGATTATGGTTTAAGGGT
*
62765169 GGTTTAAGGG-TTGTGGTTTAAGG
1 GGTTT-AGGGATTATGGTTTAAGG
62765192 TCTAAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (25 bp):
GGTTTAGGGATTATGGTTTAAGGGT
Found at i:62765264 original size:22 final size:22
Alignment explanation
Indices: 62765235--62765282 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
62765225 ATGTTCATGT
62765235 TTTA-GGATTTACG-GTTTAAGG
1 TTTAGGGA-TTACGAGTTTAAGG
* *
62765256 TTTAGGGATTAGGAGTTTAGGG
1 TTTAGGGATTACGAGTTTAAGG
62765278 TTTAG
1 TTTAG
62765283 ATTAATTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (22 bp):
TTTAGGGATTACGAGTTTAAGG
Found at i:62765267 original size:7 final size:7
Alignment explanation
Indices: 62765235--62765282 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
62765225 ATGTTCATGT
*
62765235 TTTAGGA
1 TTTAGGG
*
62765242 TTTACGG
1 TTTAGGG
*
62765249 TTTAAGG
1 TTTAGGG
62765256 TTTAGGG
1 TTTAGGG
*
62765263 ATTAGGAG
1 TTTAGG-G
62765271 TTTAGGG
1 TTTAGGG
62765278 TTTAG
1 TTTAG
62765283 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 28 0.82
8 6 0.18
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:62765478 original size:14 final size:15
Alignment explanation
Indices: 62765444--62765478 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
62765434 ATTATTTTAA
62765444 GGTTTAGGGATCATG
1 GGTTTAGGGATCATG
*
62765459 GGTTTAGGGATTAT-
1 GGTTTAGGGATCATG
62765473 GGTTTA
1 GGTTTA
62765479 TGGTTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.03, G:0.37, T:0.40
Consensus pattern (15 bp):
GGTTTAGGGATCATG
Found at i:62765481 original size:7 final size:7
Alignment explanation
Indices: 62765439--62765526 Score: 52
Period size: 7 Copynumber: 12.3 Consensus size: 7
62765429 GAGTTATTAT
*
62765439 TTTAAGG
1 TTTAGGG
62765446 TTTAGGG
1 TTTAGGG
* *
62765453 ATCATGGG
1 TTTA-GGG
62765461 TTTAGGG
1 TTTAGGG
* *
62765468 ATTATGG
1 TTTAGGG
*
62765475 TTTATGG
1 TTTAGGG
62765482 TTTAAGGG
1 TTT-AGGG
62765490 -TTAGGG
1 TTTAGGG
*
62765496 TTTAAGG
1 TTTAGGG
*
62765503 CTTAGGGG
1 TTTA-GGG
*
62765511 TTAAGGG
1 TTTAGGG
*
62765518 TTAAGGG
1 TTTAGGG
62765525 TT
1 TT
62765527 AAGTGTTAGG
Statistics
Matches: 63, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
6 4 0.06
7 47 0.75
8 12 0.19
ACGTcount: A:0.22, C:0.02, G:0.38, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:62765485 original size:21 final size:20
Alignment explanation
Indices: 62765459--62765523 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
62765449 AGGGATCATG
* *
62765459 GGTTTAGGGATTATGGTTTAT
1 GGTTTAGGG-TTAGGGTTTAA
62765480 GGTTTAAGGGTTAGGGTTTAA
1 GGTTT-AGGGTTAGGGTTTAA
*
62765501 GGCTTAGGGGTTAAGGG-TTAA
1 GGTTTA-GGGTT-AGGGTTTAA
62765522 GG
1 GG
62765524 GTTAAGTGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
20 1 0.03
21 29 0.76
22 8 0.21
ACGTcount: A:0.22, C:0.02, G:0.40, T:0.37
Consensus pattern (20 bp):
GGTTTAGGGTTAGGGTTTAA
Found at i:62765497 original size:14 final size:14
Alignment explanation
Indices: 62765439--62765540 Score: 73
Period size: 14 Copynumber: 7.3 Consensus size: 14
62765429 GAGTTATTAT
*
62765439 TTTAAGGTTTAGGG
1 TTTAAGGGTTAGGG
* * *
62765453 ATCATGGGTTTAGGG
1 TTTAAGGG-TTAGGG
* * * *
62765468 ATTATGGTTTATGG
1 TTTAAGGGTTAGGG
62765482 TTTAAGGGTTAGGG
1 TTTAAGGGTTAGGG
*
62765496 TTTAAGGCTTAGGG
1 TTTAAGGGTTAGGG
*
62765510 GTTAAGGGTTAAGGG
1 TTTAAGGGTT-AGGG
*
62765525 -TTAAGTGTTA-GG
1 TTTAAGGGTTAGGG
62765537 TTTA
1 TTTA
62765541 CTTAAGGATT
Statistics
Matches: 70, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
12 2 0.03
13 4 0.06
14 48 0.69
15 16 0.23
ACGTcount: A:0.23, C:0.02, G:0.36, T:0.39
Consensus pattern (14 bp):
TTTAAGGGTTAGGG
Found at i:62765527 original size:7 final size:7
Alignment explanation
Indices: 62765483--62765534 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
62765473 GGTTTATGGT
62765483 TTAAGGG
1 TTAAGGG
62765490 TT-AGGG
1 TTAAGGG
*
62765496 TTTAAGGC
1 -TTAAGGG
*
62765504 TTAGGGG
1 TTAAGGG
62765511 TTAAGGG
1 TTAAGGG
62765518 TTAAGGG
1 TTAAGGG
*
62765525 TTAAGTG
1 TTAAGGG
62765532 TTA
1 TTA
62765535 GGTTTACTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
6 4 0.11
7 31 0.82
8 3 0.08
ACGTcount: A:0.25, C:0.02, G:0.38, T:0.35
Consensus pattern (7 bp):
TTAAGGG
Found at i:62772940 original size:10 final size:10
Alignment explanation
Indices: 62772925--62772967 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
62772915 TTTCATTACC
62772925 TTTATAATAT
1 TTTATAATAT
62772935 TTTATAATAT
1 TTTATAATAT
*
62772945 TTTATTAT-T
1 TTTATAATAT
*
62772954 TTTTTAA-AT
1 TTTATAATAT
62772963 TTTAT
1 TTTAT
62772968 GACTTTTAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 11 0.39
10 17 0.61
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTATAATAT
Found at i:62773019 original size:43 final size:43
Alignment explanation
Indices: 62772966--62773153 Score: 281
Period size: 43 Copynumber: 4.4 Consensus size: 43
62772956 TTTAAATTTT
* * *
62772966 ATGACTTTTAGCGGCGTTTGTGTGAAAAGCGCTGCTAAATGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATGTC
* *
62773009 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTACAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATGTC
* *
62773052 ATGACCTTTGGAGGCGTTTGT-GG-AAAGCGCCGCTAAATGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATGTC
* *
62773093 ATGACCTTTAGCGGCGTCTGTGGGAAAAACGCCGCTAAATGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATGTC
62773136 ATGACCTTTAGCGGCGTT
1 ATGACCTTTAGCGGCGTT
62773154 GTTTTAAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
41 34 0.26
42 4 0.03
43 91 0.71
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAATGTC
Found at i:62773090 original size:84 final size:86
Alignment explanation
Indices: 62772966--62773153 Score: 281
Period size: 84 Copynumber: 2.2 Consensus size: 86
62772956 TTTAAATTTT
* * * *
62772966 ATGACTTTTAGCGGCGTTTGTGTGAAAAGCGCTGCTAAATGTCATGACCTTTAGCGGCGTTTGTG
1 ATGACCTTTAGAGGCGTTTGTGTGAAAAGCGCCGCTAAATGTCATGACCTTTAGCGGCGTCTGTG
* *
62773031 GGAAAAGCGCCGCTACAGGTC
66 GGAAAAACGCCGCTAAAGGTC
*
62773052 ATGACCTTTGGAGGCGTTTGTG-G-AAAGCGCCGCTAAATGTCATGACCTTTAGCGGCGTCTGTG
1 ATGACCTTTAGAGGCGTTTGTGTGAAAAGCGCCGCTAAATGTCATGACCTTTAGCGGCGTCTGTG
*
62773115 GGAAAAACGCCGCTAAATGTC
66 GGAAAAACGCCGCTAAAGGTC
*
62773136 ATGACCTTTAGCGGCGTT
1 ATGACCTTTAGAGGCGTT
62773154 GTTTTAAATA
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 72 0.78
85 1 0.01
86 19 0.21
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (86 bp):
ATGACCTTTAGAGGCGTTTGTGTGAAAAGCGCCGCTAAATGTCATGACCTTTAGCGGCGTCTGTG
GGAAAAACGCCGCTAAAGGTC
Found at i:62775615 original size:13 final size:13
Alignment explanation
Indices: 62775593--62775625 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62775583 AAGGGTTTAT
62775593 TTAT-TAAACTAA
1 TTATCTAAACTAA
62775605 TTATCTAAACTAA
1 TTATCTAAACTAA
*
62775618 TTAACTAA
1 TTATCTAA
62775626 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:62778570 original size:9 final size:10
Alignment explanation
Indices: 62778534--62778572 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
62778524 CTTTATAATG
62778534 AAAAATAAACAT
1 AAAAA-AAA-AT
62778546 AAAACAAAAAT
1 AAAA-AAAAAT
62778557 AAAAAAAAAT
1 AAAAAAAAAT
62778567 AAAAAA
1 AAAAAA
62778573 TAAGAGGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 12 0.46
11 6 0.23
12 7 0.27
13 1 0.04
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:62783936 original size:13 final size:13
Alignment explanation
Indices: 62783914--62783946 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62783904 AAGGGTTTGT
62783914 TTAT-TAAACTAA
1 TTATCTAAACTAA
62783926 TTATCTAAACTAA
1 TTATCTAAACTAA
*
62783939 TTAACTAA
1 TTATCTAA
62783947 TTTTATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:62797713 original size:53 final size:55
Alignment explanation
Indices: 62797649--62797837 Score: 159
Period size: 55 Copynumber: 3.5 Consensus size: 55
62797639 TTCTAAACTT
* * *
62797649 ACCATTTCCATGTCTTGATATGGTCTTACGTGGTATCCTTGCCTTAT-G-ACCTC
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTACCTC
* * * * * ** *
62797702 ACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATAGTAGTTT
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTACCTC
* * * * * * * *
62797757 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTA-AAACTT
1 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTACCTC
* * *
62797811 ACCAATGCCATGCCTTGGCATGGTCTT
1 ACCATTGCCATGTCTTGACATGGTCTT
62797838 CCTTGGTGTT
Statistics
Matches: 107, Mismatches: 27, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 39 0.36
54 28 0.26
55 40 0.37
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.38
Consensus pattern (55 bp):
ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGTACCTC
Found at i:62797799 original size:55 final size:54
Alignment explanation
Indices: 62797644--62797837 Score: 183
Period size: 53 Copynumber: 3.6 Consensus size: 54
62797634 TTCCTTTCTA
* * * * *
62797644 AACTTACCATTTCCATGTCTTGATATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
62797697 ACCTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
62797751 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
*
62797806 AACTTACCAATGCCATGCCTTGGCATGGTCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTT
62797838 CCTTGGTGTT
Statistics
Matches: 110, Mismatches: 29, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
53 42 0.38
54 28 0.25
55 40 0.36
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:62815360 original size:40 final size:40
Alignment explanation
Indices: 62815302--62815518 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 40
62815292 AACCGAGCTT
* * * * *
62815302 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
62815341 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
62815381 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
62815421 CTTCGGGCCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
62815461 CTTCAGGACTTAGCCCGGATATAATCACTAACATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
62815501 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
62815519 GTATCATTCA
Statistics
Matches: 148, Mismatches: 27, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 9 0.06
40 138 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:62820851 original size:53 final size:53
Alignment explanation
Indices: 62820779--62820883 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
62820769 TTCCTTTTTA
* * * *
62820779 AACTTACCATTGCCCTGTCTTGACATGGTATTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTATG
* * * *
62820832 AACTCACCATTGGCATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTAT
62820884 TGTAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTATG
Found at i:62825912 original size:129 final size:128
Alignment explanation
Indices: 62825675--62825914 Score: 345
Period size: 129 Copynumber: 1.9 Consensus size: 128
62825665 AAAATTTTTG
* * *
62825675 AACGAAATTTTCACAGAATCATTTCGTAAAACTATAGACCATAAAAATATAAGAAAAATAAATTT
1 AACGAAATTTTCACAGAATCATTCCATAAAAATATAGACCATAAAAATATAAGAAAAATAAATTT
* * *
62825740 TTCTACGTCGAATTTGTGGTCTCAAAACCACTATTTTGGCTAGACCTTAAATCAGACTATTAC
66 TTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACCTTAAATCAGACTATTAC
* * *
62825803 AACGAAAATTTTGACAGAATCATTCCATAAAAATATAGACCATAAAAATATGAGAAAATTAAATT
1 AACG-AAATTTTCACAGAATCATTCCATAAAAATATAGACCATAAAAATATAAGAAAAATAAATT
* * * * *
62825868 TTTCTATGTTGGATTTTTGGTCCCCAAACCAATATTTTGACTAGACC
65 TTTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACC
62825915 CAAAATCGGG
Statistics
Matches: 97, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
128 4 0.04
129 93 0.96
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (128 bp):
AACGAAATTTTCACAGAATCATTCCATAAAAATATAGACCATAAAAATATAAGAAAAATAAATTT
TTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACCTTAAATCAGACTATTAC
Found at i:62829254 original size:38 final size:38
Alignment explanation
Indices: 62829203--62829345 Score: 191
Period size: 38 Copynumber: 3.8 Consensus size: 38
62829193 CTTAAAGACT
**
62829203 CGCA-GCTTCGTGCTGGTAAAATATTCGGGTTAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCC
* *
62829240 CGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCC
*
62829278 CGCAGGCTTCGTGCTGGTATTATA-TCAGGGATAAATCC
1 CGCAGGCTTCGTGCTGGTATTATATTC-GGGTTAAATCC
* * *
62829316 CGTAGGCCTAGTGCTGGTATTATATTCGGG
1 CGCAGGCTTCGTGCTGGTATTATATTCGGG
62829346 CCTTCGTGTC
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
37 5 0.05
38 86 0.92
39 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.31
Consensus pattern (38 bp):
CGCAGGCTTCGTGCTGGTATTATATTCGGGTTAAATCC
Found at i:62829287 original size:76 final size:77
Alignment explanation
Indices: 62829185--62829346 Score: 204
Period size: 76 Copynumber: 2.1 Consensus size: 77
62829175 ATTTGATGTG
* * *
62829185 TATCCGGGCTTAAAGACTCGCAGCTTCGTGCTGGTAAAATATTC-GGGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGCTTCGTGCTGGTAAAATA-TCAGGGATAAATCCCGCAGGCCT
*
62829249 TGTGCTGGTATTA
65 AGTGCTGGTATTA
* ** *
62829262 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCAGGGATAAATCCCGTAGGCCT
1 TATCCGGGCTTAAAGACCCGCA-GCTTCGTGCTGGTAAAATATCAGGGATAAATCCCGCAGGCCT
62829325 AGTGCTGGTATTA
65 AGTGCTGGTATTA
*
62829338 TATTCGGGC
1 TATCCGGGC
62829347 CTTCGTGTCT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
75 7 0.10
76 58 0.79
77 8 0.11
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (77 bp):
TATCCGGGCTTAAAGACCCGCAGCTTCGTGCTGGTAAAATATCAGGGATAAATCCCGCAGGCCTA
GTGCTGGTATTA
Found at i:62829634 original size:43 final size:43
Alignment explanation
Indices: 62829338--62829621 Score: 451
Period size: 43 Copynumber: 6.6 Consensus size: 43
62829328 GCTGGTATTA
* * *
62829338 TATTCGGGCCTTCGTGTCTAGCAGTCTTCGTGCCGGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * * *
62829381 TATTCGGGCCCTCGTGCCTAGCAGGCTTCGTGCCAGTGAAGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
62829424 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
62829467 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
62829510 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
62829553 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
62829596 TATTCGAGCCTTCGTGCCTAGTAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
62829622 ATAATACCGG
Statistics
Matches: 220, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 220 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:62832135 original size:21 final size:22
Alignment explanation
Indices: 62832084--62832135 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
62832074 GCTTAAAAAT
* *
62832084 AATTTAGAAACAATCATGGAAA
1 AATTTAGAAACAATAATAGAAA
62832106 AATTT-GAAACAA-AATAGAAA
1 AATTTAGAAACAATAATAGAAA
*
62832126 ATTTTAGAAA
1 AATTTAGAAA
62832136 AATTCAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 10 0.38
21 11 0.42
22 5 0.19
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.25
Consensus pattern (22 bp):
AATTTAGAAACAATAATAGAAA
Found at i:62847092 original size:44 final size:42
Alignment explanation
Indices: 62847026--62847188 Score: 159
Period size: 44 Copynumber: 3.8 Consensus size: 42
62847016 CCGATATGTG
** *
62847026 TTTTCGTGTAAGACCACATCTGGGACTTTGGCATCG-ACTTCTGT
1 TTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTA--TCT-T
*
62847070 TTTTCGTGTAAGACCATGTCTGGGACATTGACATCGTATCTT
1 TTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTT
* * * * *
62847112 ATTTCGTGTAAAACCCTGTCTGGGACAGTGGCATC-TATGTT
1 TTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTT
* * *
62847153 TGATTGCATGTAAGACCACGTCTGGGACATTGGCAT
1 T--TTTCGTGTAAGACCATGTCTGGGACATTGGCAT
62847189 TGTAAATGCT
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 5 0.05
42 31 0.31
43 30 0.30
44 32 0.32
45 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.34
Consensus pattern (42 bp):
TTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTT
Found at i:62847177 original size:43 final size:42
Alignment explanation
Indices: 62847032--62847188 Score: 131
Period size: 42 Copynumber: 3.7 Consensus size: 42
62847022 TGTGTTTTCG
* * * * *
62847032 TGTAAGACCACATCTGGGACTTTGGCATCG-ACTTCTGTTTTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTA--TCT-TATTGCA
* * * *
62847076 TGTAAGACCATGTCTGGGACATTGACATCGTATCTTATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATCTTATTGCA
* * *
62847118 TGTAAAACC-CTGTCTGGGACAGTGGCATC-TATGTTTGATTGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGTAT-CTT-ATTGCA
62847161 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
62847189 TGTAAATGCT
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.03
42 32 0.34
43 31 0.33
44 27 0.29
45 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATCTTATTGCA
Found at i:62853346 original size:11 final size:11
Alignment explanation
Indices: 62853330--62853357 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
62853320 TGTTAAAGTT
62853330 TTGGTTGTGAA
1 TTGGTTGTGAA
62853341 TTGGTTGTGAA
1 TTGGTTGTGAA
62853352 TTGGTT
1 TTGGTT
62853358 AAGAAATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (11 bp):
TTGGTTGTGAA
Found at i:62857291 original size:28 final size:29
Alignment explanation
Indices: 62857221--62857295 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
62857211 CTGGAAATAT
* *
62857221 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * *
62857250 ATGGCACTGTGTGTGCGGGCT-AAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
62857278 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
62857296 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.23, C:0.20, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:62865062 original size:30 final size:30
Alignment explanation
Indices: 62865014--62865088 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 30
62865004 TGACGAGATT
62865014 GCACTAAGTGTGGCATGCTGG-AAATATATG
1 GCACTAAGTGT-GCATGCTGGAAAATATATG
62865044 GCACNTAAGTGTGCATGCTGGAAAATATATG
1 GCAC-TAAGTGTGCATGCTGGAAAATATATG
62865075 GCACTAAGTGTGCA
1 GCACTAAGTGTGCA
62865089 GAGCTCGAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
30 23 0.53
31 20 0.47
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (30 bp):
GCACTAAGTGTGCATGCTGGAAAATATATG
Found at i:62865146 original size:24 final size:24
Alignment explanation
Indices: 62865100--62865148 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
62865090 AGCTCGAAGG
** *
62865100 GCATGGCACTGTGTGGGCTAAATC
1 GCATGGCACTAAGTGGGCGAAATC
*
62865124 GCATGGCACTAAGTGTGCGAAATC
1 GCATGGCACTAAGTGGGCGAAATC
62865148 G
1 G
62865149 AGTATTAAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.22
Consensus pattern (24 bp):
GCATGGCACTAAGTGGGCGAAATC
Found at i:62865554 original size:39 final size:40
Alignment explanation
Indices: 62865431--62865596 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
62865421 AAATTGAATG
* * *
62865431 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTAATT
* * ***
62865470 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
*
62865510 ATATCCGGGCTAAG-CCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTAATT
* * *
62865549 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTAATT
62865589 ATATCCGG
1 ATATCCGG
62865597 TTATATTCCG
Statistics
Matches: 104, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.03
39 44 0.42
40 55 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAATT
Found at i:62865563 original size:79 final size:79
Alignment explanation
Indices: 62865431--62865580 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
62865421 AAATTGAATG
*
62865431 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
62865496 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * ** *
62865510 ATATCCGGGCTAAGCCCGAAGGC-ATTCGTGC-GAGTTATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGCCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGC
*
62865573 ATTTGTGC
64 AATTGTGC
62865581 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 4 0.06
79 58 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:62872578 original size:17 final size:18
Alignment explanation
Indices: 62872536--62872584 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
62872526 AGTTGAAAAG
62872536 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
62872555 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
62872572 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
62872585 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:62873472 original size:40 final size:40
Alignment explanation
Indices: 62873406--62873572 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
62873396 AAATTGAATG
* * *
62873406 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
62873445 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
62873485 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
62873525 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
62873565 ATATCCGG
1 ATATCCGG
62873573 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:62884684 original size:28 final size:29
Alignment explanation
Indices: 62884636--62884759 Score: 171
Period size: 28 Copynumber: 4.3 Consensus size: 29
62884626 AAGTCTCCAT
* * *
62884636 ACATACATATGGTCTATTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
62884664 TCATTCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62884692 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
62884721 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
62884750 ACATTCATAT
1 ACATTCATAT
62884760 TCATGCTTTC
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 46 0.53
29 40 0.47
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:62884735 original size:57 final size:57
Alignment explanation
Indices: 62884636--62884759 Score: 169
Period size: 57 Copynumber: 2.2 Consensus size: 57
62884626 AAGTCTCCAT
* * * *
62884636 ACATACATATGGTCTATTAGGCCCAATCTCATTCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAATCACATTCATATGGCCCACTAGGCCCAAATC
* * *
62884692 TCATTCATATGGCCCATTAGGCCCAAATCACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATCACATTCATATGGCCCACTAGGCCCAAATC
62884750 ACATTCATAT
1 ACATTCATAT
62884760 TCATGCTTTC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 20 0.34
57 25 0.43
58 13 0.22
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
ACATTCATATGGCCCATTAGGCCCAATCACATTCATATGGCCCACTAGGCCCAAATC
Found at i:62912433 original size:28 final size:28
Alignment explanation
Indices: 62912402--62912467 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
62912392 TGTATTAGTA
* *
62912402 GCTTTGCCACGTATTTTCTATTTTGGTG
1 GCTTTGCCACGTATTTGCTATTTTCGTG
*
62912430 GCTTAGCCACGTATTTGCTATTTTCGTG
1 GCTTTGCCACGTATTTGCTATTTTCGTG
62912458 GCTTTGCCAC
1 GCTTTGCCAC
62912468 TATACTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (28 bp):
GCTTTGCCACGTATTTGCTATTTTCGTG
Found at i:62918990 original size:27 final size:27
Alignment explanation
Indices: 62918952--62919014 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
62918942 CCTACAAAAC
*
62918952 CTTCTTCTACATCATCTAAGTAGCCCA
1 CTTCTACTACATCATCTAAGTAGCCCA
*
62918979 CTTCTACTACATCTTCTAAGTAGCCCA
1 CTTCTACTACATCATCTAAGTAGCCCA
62919006 CTTCTACTA
1 CTTCTACTA
62919015 ATTTTTCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.25, C:0.33, G:0.06, T:0.35
Consensus pattern (27 bp):
CTTCTACTACATCATCTAAGTAGCCCA
Found at i:62929061 original size:52 final size:52
Alignment explanation
Indices: 62928888--62929135 Score: 224
Period size: 52 Copynumber: 4.8 Consensus size: 52
62928878 AGGGTTTAAG
* *
62928888 GATACCGTGTAAGACCATG-CAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAA
1 GATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAA
* * *
62928941 GGAAATCATGTAAGA-CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAA
1 -GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AA
* * * * *
62928996 GGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAA
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAA
* *
62929048 GATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCA-AA---AG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG-TTCATAAGGCAA
* * * *
62929097 GATACCACGTAAGACCATG-AAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
62929136 GTACCCGCGT
Statistics
Matches: 164, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
48 18 0.11
49 19 0.12
51 2 0.01
52 40 0.24
53 22 0.13
54 38 0.23
55 25 0.15
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGCAA
Found at i:62929088 original size:107 final size:108
Alignment explanation
Indices: 62928895--62929089 Score: 290
Period size: 107 Copynumber: 1.8 Consensus size: 108
62928885 AAGGATACCG
*
62928895 TGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACATG
1 TGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACATG
*
62928960 TCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* *
62929003 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAA-GATACCATGTAAGACC
1 TGTAAGACCATG-CAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGA-C
*
62929064 ATGTCAAGACATGGCAATGGTAAGTT
63 ATGTCAAGACATGGCAATGATAAGTT
62929090 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 5, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
106 15 0.19
107 34 0.43
108 19 0.24
109 11 0.14
ACGTcount: A:0.35, C:0.16, G:0.26, T:0.23
Consensus pattern (108 bp):
TGTAAGACCATGCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACATG
TCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:62929346 original size:16 final size:16
Alignment explanation
Indices: 62929325--62929355 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62929315 ATAAATTTGA
62929325 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
62929341 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
62929356 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:62934377 original size:28 final size:28
Alignment explanation
Indices: 62934308--62934408 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62934298 GACAAGATTG
* * * *
62934308 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62934338 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62934366 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62934395 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62934409 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62942337 original size:28 final size:28
Alignment explanation
Indices: 62942268--62942368 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62942258 GACAAGATTG
* * * *
62942268 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62942298 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62942326 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62942355 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62942369 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62946137 original size:12 final size:12
Alignment explanation
Indices: 62946120--62946145 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
62946110 TTCAGATCCG
62946120 TCACATGTGATT
1 TCACATGTGATT
62946132 TCACATGTGATT
1 TCACATGTGATT
62946144 TC
1 TC
62946146 TCAGACAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42
Consensus pattern (12 bp):
TCACATGTGATT
Found at i:62947717 original size:55 final size:53
Alignment explanation
Indices: 62947589--62947840 Score: 218
Period size: 53 Copynumber: 4.8 Consensus size: 53
62947579 ATTAGGGTTT
* * *
62947589 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATT-GTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * *
62947643 AAGGAAATCATG-AAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * ** *
62947697 AAAGG-TCCCATGTAAGACCATGCCAAGGTATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
* *
62947750 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
62947799 AAGGATACCACGTAAGACCATG-AAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
62947841 GTACCCGTAT
Statistics
Matches: 165, Mismatches: 25, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
48 18 0.11
49 20 0.12
51 3 0.02
52 11 0.07
53 62 0.38
54 20 0.12
55 31 0.19
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:62947793 original size:108 final size:108
Alignment explanation
Indices: 62947599--62947794 Score: 281
Period size: 108 Copynumber: 1.8 Consensus size: 108
62947589 AAGGATACCG
*
62947599 TGTAAGACCATGCCAAGGCATGGCAATTGTAAGGTTTCTAAGGCAAGGAAATCATGAAGACCATG
1 TGTAAGACCATGCCAAGGCATGGCAATTGTAAGGTTTCTAAGGCAAGGAAACCATGAAGACCATG
*
62947664 TCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* * * *
62947707 TGTAAGACCATGCCAAGGTATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATATAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATT-GTAAGGTTTC-TAAGGCAAGGAAACCAT-GAAGACC
*
62947769 ATGTCAAGACATGGCAATGGTAAGTT
63 ATGTCAAGACATGGCAATGATAAGTT
62947795 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
106 3 0.04
107 19 0.24
108 56 0.72
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (108 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGTAAGGTTTCTAAGGCAAGGAAACCATGAAGACCATG
TCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:62948050 original size:16 final size:16
Alignment explanation
Indices: 62948029--62948059 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62948019 ATAAATTTGA
62948029 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
62948045 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
62948060 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:62949987 original size:43 final size:43
Alignment explanation
Indices: 62949874--62950002 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
62949864 GTTGGTGAAT
* *
62949874 AATATTATCGGGCTTCGGGCCTAGCAGACTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* *
62949917 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGATGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* *** * *
62949960 AATGATATCGGGCTTCAAACCTGGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
62950002 A
1 A
62950003 TGAGTTCAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 11 0.15
43 63 0.85
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:62955111 original size:29 final size:29
Alignment explanation
Indices: 62955078--62955151 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
62955068 CCTTCGAGCT
62955078 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62955107 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62955136 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62955152 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62955112 original size:58 final size:58
Alignment explanation
Indices: 62955019--62955151 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
62955009 ATACTCGATT
* * * * *
62955019 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
62955077 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
62955135 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
62955152 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:62962994 original size:29 final size:29
Alignment explanation
Indices: 62962961--62963034 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
62962951 CCTTCGAGCT
62962961 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
62962990 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
62963019 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
62963035 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:62962995 original size:58 final size:58
Alignment explanation
Indices: 62962902--62963034 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
62962892 ATACTCGATT
* * * * *
62962902 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
62962960 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
62963018 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
62963035 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:62969808 original size:31 final size:28
Alignment explanation
Indices: 62969770--62969869 Score: 87
Period size: 26 Copynumber: 3.5 Consensus size: 28
62969760 CATGAGAATG
*
62969770 GCACTAAGTGTGCGGGTTTAAAACTTGTACA
1 GCACTAAGTGTGCGGGTTT-AAACATGT--A
* * *
62969801 GCACTAAGTGTGCGAGTTTGATCATGTA
1 GCACTAAGTGTGCGGGTTTAAACATGTA
* ** *
62969829 GCACTAAGTGTGC-GG-TTGATTATATA
1 GCACTAAGTGTGCGGGTTTAAACATGTA
62969855 GCACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
62969870 ACTCACTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
26 22 0.36
27 2 0.03
28 14 0.23
30 5 0.08
31 18 0.30
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGGGTTTAAACATGTA
Found at i:62969856 original size:26 final size:27
Alignment explanation
Indices: 62969800--62969869 Score: 106
Period size: 26 Copynumber: 2.6 Consensus size: 27
62969790 AAACTTGTAC
*
62969800 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCG-GTTTGATCATAT
*
62969828 AGCACTAAGTGTGCGG-TTGATTATAT
1 AGCACTAAGTGTGCGGTTTGATCATAT
62969854 AGCACTAAGTGTGCGG
1 AGCACTAAGTGTGCGG
62969870 ACTCACTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
26 24 0.60
27 1 0.03
28 15 0.38
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGATCATAT
Found at i:62972230 original size:40 final size:39
Alignment explanation
Indices: 62972185--62972371 Score: 149
Period size: 40 Copynumber: 4.7 Consensus size: 39
62972175 AAATTGAATG
* * * *
62972185 ATATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT
* * * ***
62972225 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGAC-ATTATGCTAGTAATT
* * * *
62972265 ACATCCGGGCTAAGTCCTGAGGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGACA-TTATGCTAGTAATT
* * * **
62972305 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGACATT-ATGCTAGTAATT
* *
62972345 AAATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGACATT
62972372 TGTGCAAATC
Statistics
Matches: 114, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
39 3 0.03
40 109 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGACATTATGCTAGTAATT
Found at i:62972320 original size:80 final size:80
Alignment explanation
Indices: 62972187--62972371 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 80
62972177 ATTGAATGAT
* * *
62972187 ATCCGGGCTAAGTCCCGAAGACGTTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGC-AT
* *
62972252 T-GTGCTAGTGGCTAC
65 TCGTGCAAGTGGCTAA
* * * *
62972267 ATCCGGGCTAAGTCCTGAGGACATTTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
* *
62972332 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGCTAA
* *
62972347 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGACATT
62972372 TGTGCAAATC
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
79 3 0.03
80 86 0.97
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGACATTAATGCTAGAAATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGCTAA
Found at i:62972377 original size:40 final size:40
Alignment explanation
Indices: 62972227--62972378 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
62972217 TGGAAATTAT
* * * * * *
62972227 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
* * * * * *
62972267 ATCCGGGCTAAGTCCTG-AGGACATTTATGCTAGTAATTAT
1 ATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAGTTAA
* *
62972307 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
62972347 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
62972379 ATCGTGATAT
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
39 3 0.03
40 86 0.93
41 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTTAA
Found at i:62972389 original size:80 final size:80
Alignment explanation
Indices: 62972225--62972408 Score: 201
Period size: 80 Copynumber: 2.3 Consensus size: 80
62972215 GCTGGAAATT
* * * *
62972225 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGTCCTGAGGACA
1 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
* * *
62972290 TTTATGCTAGTAATT
66 TTTATGCAAATAATG
* * *
62972305 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAAATCCGGGCTAAGACCCGAAGG-
1 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTGGCTAAATCCGGGCTAAGACCCG-AGGA
* **
62972368 CATTTGTGCAAATCGTG
64 CATTTATGCAAATAATG
* *
62972385 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGTTAAGACCCGAAGGC
62972409 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
79 3 0.03
80 80 0.93
81 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCTAAATCCGGGCTAAGACCCGAGGACA
TTTATGCAAATAATG
Found at i:62972391 original size:40 final size:38
Alignment explanation
Indices: 62972224--62972408 Score: 147
Period size: 40 Copynumber: 4.7 Consensus size: 38
62972214 TGCTGGAAAT
* * *
62972224 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * * * * *
62972263 CTACATCCGGGCTAAGTCCTG-AGGACATTTATGCTAGTAAT
1 -TATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGT--G
*
62972304 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TG
* *
62972343 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-G
* * *
62972383 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
62972409 CTTGGTGCGG
Statistics
Matches: 116, Mismatches: 22, Indels: 14
0.76 0.14 0.09
Matches are distributed among these distances:
39 5 0.04
40 107 0.92
41 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG
Found at i:62978330 original size:23 final size:23
Alignment explanation
Indices: 62978300--62978375 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
62978290 CTGATGAACA
62978300 GTAAGCTCTAATGAGCTAAAACG
1 GTAAGCTCTAATGAGCTAAAACG
* * *
62978323 GTAAGCTCT-ATCAAGCT-GAACA
1 GTAAGCTCTAAT-GAGCTAAAACG
*
62978345 GTAAGCTC-ATACGAGCTAAAACG
1 GTAAGCTCTA-ATGAGCTAAAACG
*
62978368 GTAGGCTC
1 GTAAGCTC
62978376 CAAAGAGTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
22 17 0.41
23 24 0.59
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (23 bp):
GTAAGCTCTAATGAGCTAAAACG
Found at i:62978351 original size:22 final size:22
Alignment explanation
Indices: 62978294--62978352 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
62978284 CCTGAGCTGA
*
62978294 TGAACAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTAATAAGC
* *
62978316 TAAAACGGTAAGCTCT-ATCAAGC
1 T-GAACAGTAAGCTCTAAT-AAGC
62978339 TGAACAGTAAGCTC
1 TGAACAGTAAGCTC
62978353 ATACGAGCTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 14 0.47
23 16 0.53
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATAAGC
Found at i:62978361 original size:22 final size:21
Alignment explanation
Indices: 62978294--62978361 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 21
62978284 CCTGAGCTGA
*
62978294 TGAACAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCT-ACGAGC
* * *
62978316 TAAAACGGTAAGCTCTATCAAGC
1 T-GAACAGTAAGCTCTA-CGAGC
62978339 TGAACAGTAAGCTCATACGAGC
1 TGAACAGTAAGCTC-TACGAGC
62978361 T
1 T
62978362 AAAACGGTAG
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
22 18 0.50
23 18 0.50
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (21 bp):
TGAACAGTAAGCTCTACGAGC
Found at i:62979781 original size:16 final size:15
Alignment explanation
Indices: 62979760--62979789 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
62979750 CAAACATGCT
62979760 TTAACACATTATCAAA
1 TTAACACATT-TCAAA
62979776 TTAACACATTTCAA
1 TTAACACATTTCAA
62979790 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAACACATTTCAAA
Found at i:62980878 original size:30 final size:30
Alignment explanation
Indices: 62980834--62980892 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
62980824 TCTGAGCCTT
*
62980834 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
62980864 GGGGCAAAAA-TGTAATTTTGCAAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
62980893 GGGTTAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.29
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:62981340 original size:55 final size:53
Alignment explanation
Indices: 62981233--62981475 Score: 228
Period size: 55 Copynumber: 4.6 Consensus size: 53
62981223 GGGTTTAAGA
* * * *
62981233 ATACCATGAAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-G-TTCATAAGGCAAGG
* * *
62981288 AAATCATGTAAGACCATGTCAAGACATGTCATTGATAAGTTACTATAAGGCAAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC-AAGG
* * * * *
62981344 -TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAGG
* * *
62981396 ATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TTAA---AAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAGG
* * *
62981445 ATACCACGTAAGACCATGACAAGTCATGGCA
1 ATACCATGTAAGACCATGTCAAGACATGGCA
62981476 ATGGTAAGGT
Statistics
Matches: 159, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 32 0.20
52 9 0.06
53 44 0.28
54 8 0.05
55 62 0.39
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGCAAGG
Found at i:62981435 original size:108 final size:110
Alignment explanation
Indices: 62981236--62981436 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
62981226 TTTAAGAATA
*
62981236 CCATGAAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGAAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
62981301 CCATGTCAAGACATGTCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
62981346 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGAAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
62981408 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
62981437 TTAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGAAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:62981696 original size:16 final size:16
Alignment explanation
Indices: 62981675--62981705 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62981665 ATAAATTTGA
62981675 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
62981691 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
62981706 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:62987541 original size:27 final size:27
Alignment explanation
Indices: 62987511--62987762 Score: 326
Period size: 27 Copynumber: 9.3 Consensus size: 27
62987501 CCCTAATTGA
* *
62987511 TAAAATGACTATTTTTCCCTTAGGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
62987538 TAAAATGACTATTTTACCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
62987565 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
62987592 TAAAATG-CTTGTTTTGCCCTTAGGTGG
1 TAAAATGAC-TATTTTGCCCTTATGTGG
* * *
62987619 TAAAATAACTGTTTTACCCTTATAGTGG
1 TAAAATGACTATTTTGCCCTTAT-GTGG
*
62987647 TAAAATGACTATTTTGCCCTTATGCGG
1 TAAAATGACTATTTTGCCCTTATGTGG
62987674 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
** * *
62987701 TAAAATGGTTGTTTTGCCATTATGTGG
1 TAAAATGACTATTTTGCCCTTATGTGG
* *
62987728 TAAAATAACTATTTTGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATGTGG
*
62987755 TAAGATGA
1 TAAAATGA
62987763 TTCGCCCTAT
Statistics
Matches: 197, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 171 0.87
28 25 0.13
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGTGG
Found at i:62987657 original size:109 final size:109
Alignment explanation
Indices: 62987511--62987762 Score: 382
Period size: 109 Copynumber: 2.3 Consensus size: 109
62987501 CCCTAATTGA
* * * *
62987511 TAAAATGACTATTTTTCCCTTA-GGTGGTAAAATGACTATTTTACCCTTATGTGGTAAAATGACT
1 TAAAATAACTATTTTACCCTTATAGTGGTAAAATGACTATTTTACCCTTATGCGGTAAAATGACT
* *
62987575 GTTTTGCCCTTATGTGGTAAAATGCTTGTTTTGCCCTTAGGTGG
66 ATTTTGCCCTTATGTGGTAAAATGCTTGTTTTGCCATTAGGTGG
* *
62987619 TAAAATAACTGTTTTACCCTTATAGTGGTAAAATGACTATTTTGCCCTTATGCGGTAAAATGACT
1 TAAAATAACTATTTTACCCTTATAGTGGTAAAATGACTATTTTACCCTTATGCGGTAAAATGACT
* *
62987684 ATTTTGCCCTTATGTGGTAAAATGGTTGTTTTGCCATTATGTGG
66 ATTTTGCCCTTATGTGGTAAAATGCTTGTTTTGCCATTAGGTGG
* *
62987728 TAAAATAACTATTTTGCCCTTATA-TGGTAAGATGA
1 TAAAATAACTATTTTACCCTTATAGTGGTAAAATGA
62987763 TTCGCCCTAT
Statistics
Matches: 130, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
108 29 0.22
109 101 0.78
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (109 bp):
TAAAATAACTATTTTACCCTTATAGTGGTAAAATGACTATTTTACCCTTATGCGGTAAAATGACT
ATTTTGCCCTTATGTGGTAAAATGCTTGTTTTGCCATTAGGTGG
Found at i:62990892 original size:27 final size:28
Alignment explanation
Indices: 62990836--62990905 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
62990826 AAACTTGTAC
62990836 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
62990864 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
62990891 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
62990906 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:62990916 original size:27 final size:27
Alignment explanation
Indices: 62990836--62990917 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
62990826 AAACTTGTAC
* *
62990836 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
62990864 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
62990891 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
62990918 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:62995677 original size:37 final size:38
Alignment explanation
Indices: 62995590--62995691 Score: 104
Period size: 37 Copynumber: 2.8 Consensus size: 38
62995580 GTTAAGCTTA
*
62995590 ATCACTTTAATATTAAA-TTAATATAATACTTATCAAG
1 ATCACTTTAATATTAAATTTAATATAATACTTAACAAG
* * * * *
62995627 ATAAATATT-ATATTAAATTTAATTTAATA-TTAAGATG
1 ATCACT-TTAATATTAAATTTAATATAATACTTAACAAG
*
62995664 ATCACTTTAATATTAAA-TTAATAAAATA
1 ATCACTTTAATATTAAATTTAATATAATA
62995692 ATATTAATAT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
36 11 0.21
37 29 0.56
38 12 0.23
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (38 bp):
ATCACTTTAATATTAAATTTAATATAATACTTAACAAG
Found at i:62995679 original size:74 final size:74
Alignment explanation
Indices: 62995590--62995727 Score: 197
Period size: 74 Copynumber: 1.9 Consensus size: 74
62995580 GTTAAGCTTA
* * *
62995590 ATCACTTTAATATTAAATTAATATAATACTTATCAAGATAAATATTATATTAAATTTAAT-TTAA
1 ATCACTTTAATATTAAATTAATAAAATA-ATATCAAGATAAATATTAAATTAAATTTAATATTAA
62995654 TATTAAGATG
65 TATTAAGATG
* * * *
62995664 ATCACTTTAATATTAAATTAATAAAATAATATTAATATAAGTATTAAATTTAATTTAATATTAA
1 ATCACTTTAATATTAAATTAATAAAATAATATCAAGATAAATATTAAATTAAATTTAATATTAA
62995728 ATCGATTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 25 0.45
74 31 0.55
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.43
Consensus pattern (74 bp):
ATCACTTTAATATTAAATTAATAAAATAATATCAAGATAAATATTAAATTAAATTTAATATTAAT
ATTAAGATG
Found at i:62996241 original size:15 final size:17
Alignment explanation
Indices: 62996210--62996242 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
62996200 CACTATTTCC
62996210 GAAACATAAACAAGAAA
1 GAAACATAAACAAGAAA
62996227 GAAA-ATAAA-AAGAAA
1 GAAACATAAACAAGAAA
62996242 G
1 G
62996243 CTAGGGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.73, C:0.06, G:0.15, T:0.06
Consensus pattern (17 bp):
GAAACATAAACAAGAAA
Found at i:63001973 original size:25 final size:26
Alignment explanation
Indices: 63001944--63001997 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
63001934 TTTATCTTTC
*
63001944 TTTATCTT-CTTTAAGTACT-TTTTAT
1 TTTATCTTCCTTTAA-TACTATTTCAT
*
63001969 TTTATTTTCCTTTAATACTATTTCAT
1 TTTATCTTCCTTTAATACTATTTCAT
63001995 TTT
1 TTT
63001998 TAGGTTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.20, C:0.13, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTATCTTCCTTTAATACTATTTCAT
Found at i:63005063 original size:49 final size:49
Alignment explanation
Indices: 63004994--63005636 Score: 1205
Period size: 49 Copynumber: 13.1 Consensus size: 49
63004984 GTACATAATA
63004994 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005043 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005092 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63005141 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63005190 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005239 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005288 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005337 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005386 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63005435 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63005484 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63005533 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
63005582 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63005631 ATATAT
1 ATATAT
63005637 ATAATGTGGT
Statistics
Matches: 582, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 582 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:63005767 original size:37 final size:36
Alignment explanation
Indices: 63005708--63005794 Score: 129
Period size: 37 Copynumber: 2.3 Consensus size: 36
63005698 AACTTAGAAA
*
63005708 TATGTTCCGGGTGAGACTCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
*
63005746 TATGTCCGGGTACGACCCGATGACTACGTGTGGGGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
63005783 TATGTCCGGGTA
1 TATGTCCGGGTA
63005795 AGACTTCGTA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 41 0.89
38 4 0.09
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:63011440 original size:18 final size:19
Alignment explanation
Indices: 63011409--63011444 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
63011399 AAATTTAGTG
*
63011409 AATTAATTGAATTATGTTA
1 AATTAAATGAATTATGTTA
63011428 AATTAAATG-ATTATGTT
1 AATTAAATGAATTATGTT
63011445 GCCAAGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (19 bp):
AATTAAATGAATTATGTTA
Found at i:63011893 original size:57 final size:57
Alignment explanation
Indices: 63011832--63011951 Score: 231
Period size: 57 Copynumber: 2.1 Consensus size: 57
63011822 CAAGAGAGCT
63011832 ACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
1 ACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
*
63011889 ACAAGACATTATGATGTAGCTTGGTCGCATGGGTGATACTATGTGTACACCATGTAG
1 ACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
63011946 ACAAGA
1 ACAAGA
63011952 GAGCTACGGG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 62 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (57 bp):
ACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:63017096 original size:28 final size:30
Alignment explanation
Indices: 63017063--63017147 Score: 133
Period size: 29 Copynumber: 3.0 Consensus size: 30
63017053 CATACATGCA
*
63017063 TATGG-CCTTCTAGGCCC-AATCACATTCG
1 TATGGCCCATCTAGGCCCAAATCACATTCG
63017091 TATGGCCCATC-AGGCCCAAATCACATTCG
1 TATGGCCCATCTAGGCCCAAATCACATTCG
63017120 TATGGCCCAT-TAGGCCCAAATCACATTC
1 TATGGCCCATCTAGGCCCAAATCACATTC
63017148 ATATTCATGC
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
28 11 0.21
29 42 0.79
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (30 bp):
TATGGCCCATCTAGGCCCAAATCACATTCG
Found at i:63021497 original size:28 final size:28
Alignment explanation
Indices: 63021465--63021555 Score: 112
Period size: 29 Copynumber: 3.2 Consensus size: 28
63021455 TACATACATA
63021465 CATATGGCCCACTAGGCCC-AATCTCATT
1 CATATGGCCCA-TAGGCCCAAATCTCATT
*
63021493 CATATGGCCCATCAGGCCCAAATATCATT
1 CATATGGCCCAT-AGGCCCAAATCTCATT
* * *
63021522 CGTATGGGCCATTAGGCCCAAATCACATT
1 CATATGGCCCA-TAGGCCCAAATCTCATT
63021551 CATAT
1 CATAT
63021556 TCATGCTTTC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.31
29 35 0.65
30 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (28 bp):
CATATGGCCCATAGGCCCAAATCTCATT
Found at i:63021791 original size:16 final size:16
Alignment explanation
Indices: 63021772--63021802 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63021762 AATTTTTGCA
*
63021772 TTTCGGCATTTCAGCT
1 TTTCGACATTTCAGCT
63021788 TTTCGACATTTCAGC
1 TTTCGACATTTCAGC
63021803 ATTTGCCGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (16 bp):
TTTCGACATTTCAGCT
Found at i:63023816 original size:149 final size:149
Alignment explanation
Indices: 63023626--63023927 Score: 604
Period size: 149 Copynumber: 2.0 Consensus size: 149
63023616 GAAAAAGCTA
63023626 AAACCACTTTCCTATTTGAGAGATTTCGACTTAGGGCTCCAAAACTTCATGTTTTTATTCAGTTA
1 AAACCACTTTCCTATTTGAGAGATTTCGACTTAGGGCTCCAAAACTTCATGTTTTTATTCAGTTA
63023691 GTGTAATTTAATCATTTTCTTGTAATGTTTATATTTTTTGAAATCTTGAAAGTTTAATTTAGCTG
66 GTGTAATTTAATCATTTTCTTGTAATGTTTATATTTTTTGAAATCTTGAAAGTTTAATTTAGCTG
63023756 ATTCGTGTGTTCAGTTTTG
131 ATTCGTGTGTTCAGTTTTG
63023775 AAACCACTTTCCTATTTGAGAGATTTCGACTTAGGGCTCCAAAACTTCATGTTTTTATTCAGTTA
1 AAACCACTTTCCTATTTGAGAGATTTCGACTTAGGGCTCCAAAACTTCATGTTTTTATTCAGTTA
63023840 GTGTAATTTAATCATTTTCTTGTAATGTTTATATTTTTTGAAATCTTGAAAGTTTAATTTAGCTG
66 GTGTAATTTAATCATTTTCTTGTAATGTTTATATTTTTTGAAATCTTGAAAGTTTAATTTAGCTG
63023905 ATTCGTGTGTTCAGTTTTG
131 ATTCGTGTGTTCAGTTTTG
63023924 AAAC
1 AAAC
63023928 TATTATAGTT
Statistics
Matches: 153, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (149 bp):
AAACCACTTTCCTATTTGAGAGATTTCGACTTAGGGCTCCAAAACTTCATGTTTTTATTCAGTTA
GTGTAATTTAATCATTTTCTTGTAATGTTTATATTTTTTGAAATCTTGAAAGTTTAATTTAGCTG
ATTCGTGTGTTCAGTTTTG
Found at i:63033771 original size:13 final size:13
Alignment explanation
Indices: 63033753--63033777 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63033743 TGGAATGATT
63033753 GTTTGAAAATTTC
1 GTTTGAAAATTTC
63033766 GTTTGAAAATTT
1 GTTTGAAAATTT
63033778 TGATTTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
GTTTGAAAATTTC
Found at i:63038056 original size:27 final size:27
Alignment explanation
Indices: 63038004--63038268 Score: 314
Period size: 27 Copynumber: 9.8 Consensus size: 27
63037994 ATTACCAAAG
* * *
63038004 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
63038031 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
63038058 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
63038085 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
63038112 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
63038139 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
63038166 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
63038193 TACCATCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * **
63038220 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
63038247 TATCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
63038269 AGAAATACCC
Statistics
Matches: 205, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 205 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:63038280 original size:27 final size:27
Alignment explanation
Indices: 63037904--63038470 Score: 156
Period size: 27 Copynumber: 20.9 Consensus size: 27
63037894 AATACTTTAG
* * *
63037904 TTTACTAAAATTACCGAAATACCCTTAGT
1 TTTAC-AAAATTACAGAAATACCC-TCGA
*
63037933 TTGTA-AAAA-TACTGAAATACCCTCGA
1 TT-TACAAAATTACAGAAATACCCTCGA
** * *
63037959 TTTGTAAAATTACTGAAATACCTTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ** * *
63037986 CTTGTAAAATTACCA-AAGTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* *** *
63038013 TTTACAGAATTATC-GTTTTACCCCCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* * *** *
63038040 TTTACATAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* *** *
63038067 TTTACAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * ***
63038094 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * *** *
63038121 TTTATAAAATTACCGTTTTACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* ***
63038148 TTTACAGAATTACTA-TTTTACCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*** *
63038175 TTTACAAAATTATC-GTTTTACCATCGA
1 TTTACAAAATTA-CAGAAATACCCTCGA
* *** *
63038202 TTTATAAAATTACTA-TTTTACCCTTGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
* *** *
63038229 TTTACAGAATTACTA-TTTTATCCTCGA
1 TTTACAAAATTAC-AGAAATACCCTCGA
*
63038256 TTTACAAAATTACAGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
** *
63038283 TTTGTAAAATTACCA-AAATACCC-CTA
1 TTTACAAAATTA-CAGAAATACCCTCGA
** *
63038309 GTTTGTAAAATTACCA-AAATACCACT-GG
1 -TTTACAAAATTA-CAGAAATACC-CTCGA
*** * *
63038337 TTTGTGAAATTACCGAAATACCCTCAA
1 TTTACAAAATTACAGAAATACCCTCGA
**
63038364 TTTGTAAAATTACCA-AAATACCC-CTGA
1 TTTACAAAATTA-CAGAAATACCCTC-GA
* *
63038391 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTACAAAATTACAGAAATACCCTCGA
* * * *
63038418 CTTT-CTAAAAATTATAGAAATACCATTGG
1 -TTTAC--AAAATTACAGAAATACCCTCGA
*
63038447 TTTACAAAATTACTGAAATACCCT
1 TTTACAAAATTACAGAAATACCCT
63038471 TGGTTTGTAG
Statistics
Matches: 441, Mismatches: 71, Indels: 54
0.78 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 19 0.04
27 382 0.87
28 16 0.04
29 21 0.05
30 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TTTACAAAATTACAGAAATACCCTCGA
Found at i:63038291 original size:81 final size:80
Alignment explanation
Indices: 63038004--63038297 Score: 372
Period size: 81 Copynumber: 3.6 Consensus size: 80
63037994 ATTACCAAAG
* * * * * *
63038004 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
* **
63038069 TACAAAATTACCGTTT
65 TACAGAATTACTATTT
* * *
63038085 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
63038150 TACAGAATTACTATTT
65 TACAGAATTACTATTT
* *
63038166 TACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTATAAAATTACTATTTTACCCTTGATT
1 TACCCTCGATTTACAAAATTA-CGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATT
63038231 TACAGAATTACTATTT
65 TACAGAATTACTATTT
* *** * *
63038247 TATCCTCGATTTACAAAATTACAGAAATACCCTCAATTTGTAAAATTACCA
1 TACCCTCGATTTACAAAATTAC-GTTTTACCCTCGATTTATAAAATTACCA
63038298 AAATACCCCT
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
80 2 0.01
81 186 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.40
Consensus pattern (80 bp):
TACCCTCGATTTACAAAATTACGTTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGATTT
ACAGAATTACTATTT
Found at i:63038305 original size:81 final size:80
Alignment explanation
Indices: 63038058--63038396 Score: 270
Period size: 81 Copynumber: 4.2 Consensus size: 80
63038048 ATTACCGTTT
* * * * *** *
63038058 TACCCTTGATTTACAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
****
63038123 TATAAAATTACCGTTT
65 TATAAAATTACCAAAA
* *** * *
63038139 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTTTACCATCGATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA-CGAAATACCCTCAATT
* ***
63038204 TATAAAATTACTATTT
65 TATAAAATTACCAAAA
* *
63038220 TACCCTTGATTTACAGAATTACTATTTTATCCTCGATTTACAAAATTACAGAAATACCCTCAATT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-GAAATACCCTCAATT
*
63038285 TGTAAAATTACCAAAA
65 TATAAAATTACCAAAA
* * *** * ***
63038301 TACCCCTAGTTTGTA-A-AATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAATACCCTCA
1 TA-CCCTTGATT-TACAGAATTACCATTTTACC-CTCGATTTACAAAATTA-CGAAATACCCTCA
*
63038363 ATTTGTAAAATTACCAAAA
62 ATTTATAAAATTACCAAAA
*
63038382 TACCCCTGATTTACA
1 TACCCTTGATTTACA
63038397 AAGTTACAGA
Statistics
Matches: 218, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
79 2 0.01
80 8 0.04
81 194 0.89
82 12 0.06
83 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (80 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACGAAATACCCTCAATTT
ATAAAATTACCAAAA
Found at i:63038560 original size:27 final size:27
Alignment explanation
Indices: 63038529--63038621 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
63038519 TACCCCTATT
*
63038529 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
* *
63038556 GGGTAAAGTGACCGTAAAGCCCCTGTA
1 AGGTAAAATGACCGTAAAGCCCCTGTA
*
63038583 AGGTAAAGTGACCGTAATA-CCCCTGTA
1 AGGTAAAATGACCGTAA-AGCCCCTGTA
*
63038610 TGGTAAAATGAC
1 AGGTAAAATGAC
63038622 GAATATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 58 0.98
28 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAATGACCGTAAAGCCCCTGTA
Found at i:63039343 original size:8 final size:8
Alignment explanation
Indices: 63039332--63039359 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
63039322 TTAAAGTGAT
63039332 AAATGCCG
1 AAATGCCG
63039340 AAATGCCG
1 AAATGCCG
63039348 AAATGCCG
1 AAATGCCG
63039356 AAAT
1 AAAT
63039360 TCTGGCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Done.