Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 201 of 318
Found at i:63039892 original size:20 final size:20
Alignment explanation
Indices: 63039867--63039929 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
63039857 ATTTTGATAA
*
63039867 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
*
63039887 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63039907 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63039927 ACA
1 ACA
63039930 CGAGATGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63040011 original size:24 final size:24
Alignment explanation
Indices: 63039984--63040149 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
63039974 GAGGAAGTGA
63039984 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63040008 AAAA-GGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
**
63040031 AAAAGGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCCCAGTTATT
*
63040055 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63040079 -AAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
*
63040102 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63040126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63040150 ATGATAAAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 43 0.34
24 73 0.57
25 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63040059 original size:47 final size:47
Alignment explanation
Indices: 63039984--63040150 Score: 221
Period size: 47 Copynumber: 3.5 Consensus size: 47
63039974 GAGGAAGTGA
*
63039984 AAAAGGGCTTATGCCCCAGTTATTAAAA-GGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
** *
63040030 CAAAAGGGCTTATGCCCCAGTTACCAAAAGGGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* *
63040078 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
*
63040126 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
63040151 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
47 67 0.63
48 27 0.25
49 12 0.11
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:63040100 original size:71 final size:71
Alignment explanation
Indices: 63039984--63040149 Score: 244
Period size: 71 Copynumber: 2.3 Consensus size: 71
63039974 GAGGAAGTGA
* *
63039984 AAAAGGGCTTATGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
63040049 GTTACC
66 GTTACC
* *
63040055 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
**
63040120 GTTATT
66 GTTACC
*
63040126 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTACGCC-CCAGTTAT
63040150 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 75 0.87
72 11 0.13
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAAGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTACC
Found at i:63040377 original size:31 final size:31
Alignment explanation
Indices: 63040342--63040405 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63040332 CGTTTACAGT
*
63040342 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
63040373 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63040404 AA
1 AA
63040406 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63044202 original size:16 final size:17
Alignment explanation
Indices: 63044173--63044204 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
63044163 CAATTTAGTC
63044173 CAAAATTCACACTTTTT
1 CAAAATTCACACTTTTT
63044190 CAAAATT-ACACTTTT
1 CAAAATTCACACTTTT
63044205 GCCCCTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
CAAAATTCACACTTTTT
Found at i:63047290 original size:40 final size:39
Alignment explanation
Indices: 63047218--63047364 Score: 136
Period size: 40 Copynumber: 3.7 Consensus size: 39
63047208 AAATTGAATG
* *
63047218 ATATCCGGGCTAAGCCCCGAAGTCATTAATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATT-ATGCTGGAAATT
* * ****
63047258 ATATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTATGCTGGAAATT
* *
63047298 ACATCCGGGCTAAGACCCGAAGGCATT-CG-TGCGAATCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTATGCTG-GAA--ATT
*
63047338 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
63047365 TGTGCACGTG
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
37 1 0.01
38 2 0.02
39 3 0.04
40 76 0.89
41 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTATGCTGGAAATT
Found at i:63047383 original size:40 final size:40
Alignment explanation
Indices: 63047256--63047385 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
63047246 ATGCTGGAAA
* * * *
63047256 TTATATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * * **
63047296 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63047336 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63047376 TTATATCCGG
1 TTATATCCGG
63047386 TTATATTCCG
Statistics
Matches: 71, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
39 1 0.01
40 70 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63047384 original size:80 final size:79
Alignment explanation
Indices: 63047218--63047385 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
63047208 AAATTGAATG
* * *
63047218 ATATCCGGGCTAAGCCCCGAAGTCATTAATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTAATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
63047283 ATTATGCTAGTGGCT
65 ATTATGCTAGTGGCT
* ** *
63047298 ACATCCGGGCTAAGACCCGAAGGCATTCGTGC-GAATCATTCTATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTAATGCGGAA--ATTATATCCGGGCTAAGACCCGAAGGC
* * *
63047362 ATTTGTGC-ACGTGGTT
64 AATTATGCTA-GTGGCT
63047378 ATATCCGG
1 ATATCCGG
63047386 TTATATTCCG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.04
79 1 0.01
80 70 0.95
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTAATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTATGCTAGTGGCT
Found at i:63055266 original size:38 final size:39
Alignment explanation
Indices: 63055215--63055323 Score: 141
Period size: 38 Copynumber: 2.8 Consensus size: 39
63055205 CTGGAAATTA
* *
63055215 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGT-GGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAGGC
**
63055253 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGT-AGGC
*
63055293 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
63055324 ACGTGTTATA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
37 3 0.05
38 29 0.47
40 28 0.45
41 2 0.03
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTAGGC
Found at i:63058999 original size:40 final size:40
Alignment explanation
Indices: 63058933--63059083 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
63058923 AAATTGAATG
* * *
63058933 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
63058972 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
63059012 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
63059052 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
63059084 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63059097 original size:40 final size:40
Alignment explanation
Indices: 63058970--63059099 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63058960 ATGCTGGAAA
* * *
63058970 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63059010 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63059050 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63059090 TTATATCCGG
1 TTATATCCGG
63059100 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63067118 original size:40 final size:40
Alignment explanation
Indices: 63066991--63067120 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
63066981 ATGCTGGAAA
* * *
63066991 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
63067031 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
63067071 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
63067111 TTATATCCGG
1 TTATATCCGG
63067121 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:63074575 original size:32 final size:32
Alignment explanation
Indices: 63074534--63074598 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
63074524 TAGAGCAACC
63074534 TATTCAAGCCACGAAAAAACACAGGATTTGAT
1 TATTCAAGCCACGAAAAAACACAGGATTTGAT
63074566 TATTCAAGCCACGAAAAAACACAGGATTTGAT
1 TATTCAAGCCACGAAAAAACACAGGATTTGAT
63074598 T
1 T
63074599 CGTGTTCCCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.23
Consensus pattern (32 bp):
TATTCAAGCCACGAAAAAACACAGGATTTGAT
Found at i:63092838 original size:17 final size:18
Alignment explanation
Indices: 63092812--63092845 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
63092802 TTTTTGTTTA
63092812 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
63092829 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
63092846 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:63093428 original size:25 final size:26
Alignment explanation
Indices: 63093393--63093458 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
63093383 TTCTCCTAAA
* * *
63093393 TTTTAATTTTATTTAATTATT-TAAT
1 TTTTAAATTTATTGAATCATTATAAT
*
63093418 TTTTCAATTTATTGAATCATTAATAAT
1 TTTTAAATTTATTGAATCATT-ATAAT
63093445 TTTTAAATTT-TTGA
1 TTTTAAATTTATTGA
63093459 GAAAATAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 17 0.50
26 4 0.12
27 13 0.38
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (26 bp):
TTTTAAATTTATTGAATCATTATAAT
Found at i:63103580 original size:42 final size:42
Alignment explanation
Indices: 63103534--63103643 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
63103524 AGATTACGTA
* * *
63103534 TAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAATATGAGATC-CCATG
* *
63103576 TAAGACCATAGCTGGGCTATTGGCATCAATATGAGATCCCATG
1 TAAGACCATATCTGGGATA-TGGCATCAATATGAGATCCCATG
*
63103619 TAAGACCATATTTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
63103644 TGGTATGGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 23 0.40
43 34 0.59
44 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAATATGAGATCCCATG
Found at i:63106555 original size:40 final size:40
Alignment explanation
Indices: 63106500--63106588 Score: 160
Period size: 40 Copynumber: 2.2 Consensus size: 40
63106490 TATGTGCATA
*
63106500 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGAGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
63106540 GCATTTGTGAGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGAGGGTTATTATAACCGGGTTAAGTCCCGAAG
63106580 GCATTCGTG
1 GCATTCGTG
63106589 CTGGTTGTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGAGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:63117087 original size:27 final size:27
Alignment explanation
Indices: 63117048--63117141 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
63117038 TAAGGGTAAA
* * *
63117048 TCGGTAGTCCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCATACAGGGGTATT
** *
63117075 TCAATAATTCTACCATACATGGGTATT
1 TCGGTAATTCTACCATACAGGGGTATT
* *
63117102 TCGGTAATTCTACCTTACAGAGGTATT
1 TCGGTAATTCTACCATACAGGGGTATT
63117129 TCGGTAATTCTAC
1 TCGGTAATTCTAC
63117142 AACTTATCCA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
TCGGTAATTCTACCATACAGGGGTATT
Found at i:63123769 original size:27 final size:26
Alignment explanation
Indices: 63123721--63123780 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
63123711 GCGAGGCTGC
*
63123721 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
63123748 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
63123774 TAGATAT
1 CAGATAT
63123781 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63125776 original size:40 final size:40
Alignment explanation
Indices: 63125716--63125837 Score: 149
Period size: 40 Copynumber: 3.0 Consensus size: 40
63125706 TATTCGAATG
*
63125716 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* **
63125756 ATATCCGGACTAAGATCCGAAGGCATTTGTGGGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
63125796 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
63125836 AT
1 AT
63125838 TGTAACACCC
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 65 0.94
41 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:63127359 original size:28 final size:27
Alignment explanation
Indices: 63127297--63127392 Score: 131
Period size: 28 Copynumber: 3.5 Consensus size: 27
63127287 ATAGTGAGTC
63127297 CGCACACTTAGTGCTATAAATC-AACT
1 CGCACACTTAGTGCTATAAATCAAACT
*
63127323 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATA-AATCAAACT
* * *
63127351 CGCACACTTAGTGCTGTACAATTAAACC
1 CGCACACTTAGTGCTATA-AATCAAACT
63127379 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63127393 CATTCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
26 18 0.29
27 3 0.05
28 41 0.66
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAATCAAACT
Found at i:63135297 original size:26 final size:26
Alignment explanation
Indices: 63135268--63135364 Score: 113
Period size: 26 Copynumber: 3.5 Consensus size: 26
63135258 ATAGTGAGTC
63135268 CGCACACTTAGTGCTATAAATCAACT
1 CGCACACTTAGTGCTATAAATCAACT
*
63135294 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATA-AATC-AACT
* * *
63135322 CGCACACTTAGTGCTGTACAAATTAAACC
1 CGCACACTTAGTGC--TATAAA-TCAACT
63135351 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63135365 CATTCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 7
0.84 0.07 0.10
Matches are distributed among these distances:
26 18 0.30
27 3 0.05
28 18 0.30
29 18 0.30
30 4 0.07
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (26 bp):
CGCACACTTAGTGCTATAAATCAACT
Found at i:63135330 original size:28 final size:27
Alignment explanation
Indices: 63135268--63135364 Score: 124
Period size: 29 Copynumber: 3.5 Consensus size: 27
63135258 ATAGTGAGTC
63135268 CGCACACTTAGTGCTATAAATC-AACT
1 CGCACACTTAGTGCTATAAATCAAACT
*
63135294 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATA-AATCAAACT
* * *
63135322 CGCACACTTAGTGCTGTACAAATTAAACC
1 CGCACACTTAGTGC--TATAAATCAAACT
63135351 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63135365 CATTCTCATG
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
26 18 0.29
27 3 0.05
28 18 0.29
29 20 0.32
30 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAATCAAACT
Found at i:63137092 original size:40 final size:40
Alignment explanation
Indices: 63137002--63137080 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
63136992 GGCTGTCACA
* *
63137002 ACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTG
1 ACTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTG
*
63137042 ACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 ACTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGT
63137081 TGTTATCTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ACTATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTG
Found at i:63145362 original size:40 final size:40
Alignment explanation
Indices: 63145155--63145346 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
63145145 TATTCGAATG
* *
63145155 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * **
63145195 ATATCCGGACTAAGATCCGAAGGCATTTGTGGGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
63145235 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
63145275 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
63145315 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
63145347 GAGTTGTTAT
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:63146777 original size:27 final size:26
Alignment explanation
Indices: 63146727--63146777 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63146717 TACGGGGCAT
*
63146727 TACAGATATTGTGACGAAGTCACCGG
1 TACAGATATTGTGACGAAGCCACCGG
* *
63146753 TACAGATATATGTGGCGAGGCCACC
1 TACAGATAT-TGTGACGAAGCCACC
63146778 AGATTCCAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 9 0.43
27 12 0.57
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (26 bp):
TACAGATATTGTGACGAAGCCACCGG
Found at i:63147457 original size:27 final size:27
Alignment explanation
Indices: 63147427--63147484 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
63147417 ATCGGTAGTC
*
63147427 CTACCCTACAGGGGTATTTCAATAATT
1 CTACCATACAGGGGTATTTCAATAATT
**
63147454 CTACCATACAGGGGTATTTCGGTAATT
1 CTACCATACAGGGGTATTTCAATAATT
63147481 CTAC
1 CTAC
63147485 AACTTATCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (27 bp):
CTACCATACAGGGGTATTTCAATAATT
Found at i:63156189 original size:2 final size:2
Alignment explanation
Indices: 63156178--63156210 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
63156168 GGTGTGAAAG
63156178 TA TA -A TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63156211 TTTGAAAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63157608 original size:38 final size:38
Alignment explanation
Indices: 63157557--63157718 Score: 216
Period size: 38 Copynumber: 4.3 Consensus size: 38
63157547 ATATTTGATG
*
63157557 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* ** *
63157595 TATATCCGGGTTAAATTCCATAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
63157633 TATATCAGGGTTAAATCCCGCAGACTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
63157671 TATATCCGAGTTAAATCCCGCAGGCCTAGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
63157709 TATATTCGGG
1 TATATCCGGG
63157719 CCTTTGAGCC
Statistics
Matches: 105, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 105 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:63160529 original size:26 final size:26
Alignment explanation
Indices: 63160495--63160662 Score: 93
Period size: 26 Copynumber: 6.6 Consensus size: 26
63160485 ACTTCCTGCA
63160495 AGGGCTTTCTAGATAACTTCGCCACT
1 AGGGCTTTCTAGATAACTTCGCCACT
* *
63160521 AGGGCTTTCAAGATAACTTCACCACT
1 AGGGCTTTCTAGATAACTTCGCCACT
* * * *
63160547 AAGGCTTCCCAAATAA-TAT-GCCACAT
1 AGGGCTTTCTAGATAACT-TCGCCAC-T
* * * *
63160573 TGGTCTTTC-AAATAAC-TCGCCACA
1 AGGGCTTTCTAGATAACTTCGCCACT
* *
63160597 AAGGCTTTCTAGATAA-TAT-GCCATAT
1 AGGGCTTTCTAGATAACT-TCGCCA-CT
*
63160623 AGGCCTTT-TAGATAAC-TCGCCA-T
1 AGGGCTTTCTAGATAACTTCGCCACT
* *
63160646 AAAGGCTTTCTATATAA
1 -AGGGCTTTCTAGATAA
63160663 TATGCCACAA
Statistics
Matches: 107, Mismatches: 23, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
23 1 0.01
24 14 0.13
25 42 0.39
26 50 0.47
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.30
Consensus pattern (26 bp):
AGGGCTTTCTAGATAACTTCGCCACT
Found at i:63160613 original size:50 final size:50
Alignment explanation
Indices: 63160497--63160704 Score: 204
Period size: 50 Copynumber: 4.1 Consensus size: 50
63160487 TTCCTGCAAG
* *
63160497 GGCTTTCTAGATAACT-TCGCCAC-TAGGGCTTTCAAGATAACTTCACCACTAA
1 GGCTTTCTAGATAA-TAT-GCCACATAGGCCTTTCAA-ATAAC-TCACCACAAA
* * * * * *
63160549 GGCTTCCCAAATAATATGCCACATTGGTCTTTCAAATAACTCGCCACAAA
1 GGCTTTCTAGATAATATGCCACATAGGCCTTTCAAATAACTCACCACAAA
* * * * *
63160599 GGCTTTCTAGATAATATGCCATATAGGCCTTTTAGATAACTCGCCATAAA
1 GGCTTTCTAGATAATATGCCACATAGGCCTTTCAAATAACTCACCACAAA
* * * * *
63160649 GGCTTTCTATATAATATGCCACAAATGCCTTTCAGATAACTTACCACAAA
1 GGCTTTCTAGATAATATGCCACATAGGCCTTTCAAATAACTCACCACAAA
63160699 GGCTTT
1 GGCTTT
63160705 GTTTGGTTTG
Statistics
Matches: 130, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 97 0.75
51 11 0.08
52 22 0.17
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (50 bp):
GGCTTTCTAGATAATATGCCACATAGGCCTTTCAAATAACTCACCACAAA
Found at i:63160619 original size:25 final size:25
Alignment explanation
Indices: 63160497--63160704 Score: 131
Period size: 25 Copynumber: 8.2 Consensus size: 25
63160487 TTCCTGCAAG
* *
63160497 GGCTTTCTAGATAACTTCGCCACTAG
1 GGCTTTCTAGATAACTT-GCCACAAA
* * *
63160523 GGCTTTCAAGATAACTTCACCACTAA
1 GGCTTTCTAGATAACTT-GCCACAAA
* * * **
63160549 GGCTTCCCAAATAA-TATGCCACATT
1 GGCTTTCTAGATAACT-TGCCACAAA
* *
63160574 GGTCTTTC-AAATAACTCGCCACAAA
1 GG-CTTTCTAGATAACTTGCCACAAA
* *
63160599 GGCTTTCTAGATAA-TATGCCATATA
1 GGCTTTCTAGATAACT-TGCCACAAA
* *
63160624 GGCCTTT-TAGATAACTCGCCATAAA
1 GG-CTTTCTAGATAACTTGCCACAAA
*
63160649 GGCTTTCTATATAA-TATGCCACAAA
1 GGCTTTCTAGATAACT-TGCCACAAA
* *
63160674 TGCCTTTC-AGATAACTTACCACAAA
1 -GGCTTTCTAGATAACTTGCCACAAA
63160699 GGCTTT
1 GGCTTT
63160705 GTTTGGTTTG
Statistics
Matches: 144, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
24 16 0.11
25 76 0.53
26 52 0.36
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (25 bp):
GGCTTTCTAGATAACTTGCCACAAA
Found at i:63162431 original size:40 final size:40
Alignment explanation
Indices: 63162366--63162547 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
63162356 AACCCAAGTA
* * * * *
63162366 CCTTCGGGATTTA-ACCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
* *
63162405 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAG
*
63162445 CCTTCGGGACTTAGCCCGGATTTAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
*
63162485 CCTTC-GGATCTTAGTCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAAAG
* *
63162525 TCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
63162548 CATTCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
39 15 0.12
40 109 0.85
41 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAAG
Found at i:63174622 original size:43 final size:43
Alignment explanation
Indices: 63174496--63174623 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 43
63174486 ACTTAGGATC
* * *
63174496 CGATATGTG-TTATCATGTAAGACCACGTCTGGGATGTTTGCAT
1 CGATATCTGATTA-CATGTAAGACCACGTCTGGGAAGTTGGCAT
* * * * **
63174539 CG-TATCTAATTTCGTGTACGACCTTGTCTGGGATAG-TGGCAT
1 CGATATCTGATTACATGTAAGACCACGTCTGGGA-AGTTGGCAT
* *
63174581 CGATATTTGATTACATGTAAGACCACGTTTGGGAAGTTGGCAT
1 CGATATCTGATTACATGTAAGACCACGTCTGGGAAGTTGGCAT
63174624 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
42 30 0.47
43 34 0.53
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
CGATATCTGATTACATGTAAGACCACGTCTGGGAAGTTGGCAT
Found at i:63176646 original size:16 final size:16
Alignment explanation
Indices: 63176625--63176659 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
63176615 AGCTCATCTA
*
63176625 AGATTAGGAGGCGGTT
1 AGATTAGGAGACGGTT
63176641 AGATTAGGAGACGGTT
1 AGATTAGGAGACGGTT
63176657 AGA
1 AGA
63176660 GAGTCAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.40, T:0.23
Consensus pattern (16 bp):
AGATTAGGAGACGGTT
Found at i:63180675 original size:40 final size:40
Alignment explanation
Indices: 63180580--63180756 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
63180570 CGAATGGTGT
* * * *
63180580 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
63180620 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
63180660 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
63180700 CC-GGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
63180739 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63180757 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
39 32 0.28
40 65 0.58
41 16 0.14
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:63180741 original size:79 final size:80
Alignment explanation
Indices: 63180580--63180796 Score: 224
Period size: 79 Copynumber: 2.7 Consensus size: 80
63180570 CGAATGGTGT
* * * * * * *
63180580 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTCACTAAATCCGGCTAAATTCCCGAAGGCAATT
* *
63180644 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* *
63180660 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGCT-AATTCCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGCTAAATTCCCGAAGGCAATTG
* *
63180724 TGCGAATCACTATAA
66 TGCGAATCACCAAAA
* * * * * * *
63180739 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAAATT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGCTAAATTCCCGAAGG
63180797 TACGTGATTC
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 72 0.63
80 29 0.25
81 14 0.12
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTCACTAAATCCGGCTAAATTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:63180777 original size:40 final size:40
Alignment explanation
Indices: 63180630--63180782 Score: 132
Period size: 40 Copynumber: 3.9 Consensus size: 40
63180620 CCGGGTCAAT
* * * * * * *
63180630 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* *
63180670 TCCCGAAGGCATTCGTGCGAGTTACTA-AATCC-GGCTAAT-
1 TCCCGAAGGCAATCGTGCGAGTCACTATAA-CCGGGCT-ATG
* *
63180709 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
* * * *
63180749 TCCCGAAGACAATCGAGCGAGTCGCTATATCCGG
1 TCCCGAAGGCAATCGTGCGAGTCACTATAACCGG
63180783 TTAAATTCCG
Statistics
Matches: 94, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
39 32 0.34
40 62 0.66
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (40 bp):
TCCCGAAGGCAATCGTGCGAGTCACTATAACCGGGCTATG
Found at i:63187900 original size:40 final size:40
Alignment explanation
Indices: 63187802--63187949 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 40
63187792 TCGAATGGCG
* * * *
63187802 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAATTCCCGAAGGCATTTGTG-TGAGTTACTAAA
*
63187843 TCCGGG-TCAATTCCCGAAGGCATTTGTGTGAGTTACCAAA
1 TCCGGGCT-AATTCCCGAAGGCATTTGTGTGAGTTACTAAA
* * * *
63187883 ACCGGGTTAAGTT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAA-TTCCCGAAGGCATTTGTGTGAGTTACTAAA
*
63187923 TCCGGGCTAATTCCCGAAGGCAATTGT
1 TCCGGGCTAATTCCCGAAGGCATTTGT
63187950 ACGAATCACT
Statistics
Matches: 90, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 61 0.68
41 27 0.30
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAATTCCCGAAGGCATTTGTGTGAGTTACTAAA
Found at i:63187980 original size:80 final size:81
Alignment explanation
Indices: 63187803--63188021 Score: 203
Period size: 80 Copynumber: 2.7 Consensus size: 81
63187793 CGAATGGCGT
* * *
63187803 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
** * *
63187868 GTGTGAGTTACCAAAA
66 GTACGAATCACCAAAA
* * * *
63187884 CCGGGTTAAGTTCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
63187947 TGTACGAATCACTATAA
65 TGTACGAATCACCAAAA
* * * * * * * * *
63187964 TCGGGCTATGTCCCGAAGACAATCGAGC-AAGTCACTATATCCGGTTAAATT-CCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGG
63188022 TACGTGATTC
Statistics
Matches: 111, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
79 8 0.07
80 79 0.71
81 24 0.22
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTACGAATCACCAAAA
Found at i:63205378 original size:13 final size:13
Alignment explanation
Indices: 63205362--63205498 Score: 86
Period size: 13 Copynumber: 10.3 Consensus size: 13
63205352 AATTATACAA
63205362 AAATAGATATATG
1 AAATAGATATATG
* *
63205375 AAATGGTTATATG
1 AAATAGATATATG
* *
63205388 -AATCGATTATATA
1 AAATAGA-TATATG
63205401 AAAGTAGATATATG
1 AAA-TAGATATATG
* *
63205415 AAATGGTTATATG
1 AAATAGATATATG
63205428 -AATCA-ATTATATAG
1 AAAT-AGA-TATAT-G
*
63205442 AAATAGATGTATG
1 AAATAGATATATG
63205455 AAAT-GATTATATG
1 AAATAGA-TATATG
* *
63205468 -AGTCGATTATATAG
1 AAATAGA-TATAT-G
63205482 AAATAGATATATG
1 AAATAGATATATG
63205495 AAAT
1 AAAT
63205499 GGAACATTGG
Statistics
Matches: 96, Mismatches: 16, Indels: 24
0.71 0.12 0.18
Matches are distributed among these distances:
12 11 0.11
13 52 0.54
14 22 0.23
15 11 0.11
ACGTcount: A:0.47, C:0.02, G:0.17, T:0.34
Consensus pattern (13 bp):
AAATAGATATATG
Found at i:63205384 original size:40 final size:40
Alignment explanation
Indices: 63205328--63205500 Score: 247
Period size: 40 Copynumber: 4.3 Consensus size: 40
63205318 TGAAATTTTA
* * *
63205328 ATATATGAAATAGTTATACGAATCAATTATACAAAAATAG
1 ATATATGAAATGGTTATATGAATCAATTATATAAAAATAG
* *
63205368 ATATATGAAATGGTTATATGAATCGATTATATAAAAGTAG
1 ATATATGAAATGGTTATATGAATCAATTATATAAAAATAG
*
63205408 ATATATGAAATGGTTATATGAATCAATTATATAGAAATAG
1 ATATATGAAATGGTTATATGAATCAATTATATAAAAATAG
* * * * *
63205448 ATGTATGAAATGATTATATGAGTCGATTATATAGAAATAG
1 ATATATGAAATGGTTATATGAATCAATTATATAAAAATAG
63205488 ATATATGAAATGG
1 ATATATGAAATGG
63205501 AACATTGGAT
Statistics
Matches: 119, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 119 1.00
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (40 bp):
ATATATGAAATGGTTATATGAATCAATTATATAAAAATAG
Found at i:63211917 original size:40 final size:39
Alignment explanation
Indices: 63211752--63211935 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63211742 AAATTGAATG
* * *
63211752 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63211792 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63211832 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63211872 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63211911 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63211936 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63211960 original size:80 final size:81
Alignment explanation
Indices: 63211792--63211980 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63211782 GCTGGAAATT
* * * *
63211792 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63211857 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63211873 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63211936 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63211952 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63211981 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63221257 original size:29 final size:29
Alignment explanation
Indices: 63221224--63221316 Score: 143
Period size: 29 Copynumber: 3.2 Consensus size: 29
63221214 GTGACGAGAT
*
63221224 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63221253 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* *
63221282 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
63221310 CGGCACT
1 TGGCACT
63221317 GGGTGTGCGA
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 13 0.22
29 47 0.78
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63221329 original size:28 final size:29
Alignment explanation
Indices: 63221224--63221329 Score: 135
Period size: 29 Copynumber: 3.7 Consensus size: 29
63221214 GTGACGAGAT
*
63221224 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
63221253 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTGGAAATATA
* *
63221282 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAATATA
* **
63221310 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
63221330 CGGAGGGTAT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
28 23 0.33
29 45 0.65
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAATATA
Found at i:63229097 original size:29 final size:28
Alignment explanation
Indices: 63229064--63229221 Score: 126
Period size: 29 Copynumber: 5.6 Consensus size: 28
63229054 CGGTGACGAG
63229064 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGGAAA-AT
63229093 ATGGCACTAAGTGTGCGTGCTGG--AAT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAT
**
63229119 ATGGCACTAAGTGTGCAAGCTGGAAAAAT
1 ATGGCACTAAGTGTGCGTGCTGG-AAAAT
* * * ***
63229148 ACGGCACT-GGTGTGCGAGCTCGGAGGGT
1 ATGGCACTAAGTGTGCGTGCT-GGAAAAT
** * * *
63229176 ATGGCACTGTGTGTGCGGGCT-TAAATT
1 ATGGCACTAAGTGTGCGTGCTGGAAAAT
63229203 ACGTGGCACTAAGTGTGCG
1 A--TGGCACTAAGTGTGCG
63229222 AAATCGAGTA
Statistics
Matches: 105, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
26 23 0.22
27 4 0.04
28 19 0.18
29 59 0.56
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
ATGGCACTAAGTGTGCGTGCTGGAAAAT
Found at i:63229127 original size:26 final size:26
Alignment explanation
Indices: 63229064--63229143 Score: 115
Period size: 26 Copynumber: 3.0 Consensus size: 26
63229054 CGGTGACGAG
63229064 ATGGCACTAAGTGTGCGTGCTGGAAATAT
1 ATGGCACTAAGTGTGCGTGCTGG--A-AT
63229093 ATGGCACTAAGTGTGCGTGCTGGAAT
1 ATGGCACTAAGTGTGCGTGCTGGAAT
**
63229119 ATGGCACTAAGTGTGCAAGCTGGAA
1 ATGGCACTAAGTGTGCGTGCTGGAA
63229144 AAATACGGCA
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
26 25 0.51
27 1 0.02
29 23 0.47
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.25
Consensus pattern (26 bp):
ATGGCACTAAGTGTGCGTGCTGGAAT
Found at i:63229132 original size:55 final size:57
Alignment explanation
Indices: 63229064--63229222 Score: 157
Period size: 55 Copynumber: 2.8 Consensus size: 57
63229054 CGGTGACGAG
* *
63229064 ATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCT-GGA-AT
1 ATGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGAGAT
* * * * *
63229119 ATGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACT-GGTGTGCGAGCTCGGAGGGT
1 ATGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGA-GAT
** * *
63229176 ATGGCACTGTGTGTGCGGGCT-TAAAT-TACGTGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGAGCTGGAAATATA--TGGCACTAAGTGTGCGA
63229223 AATCGAGTAA
Statistics
Matches: 83, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
54 10 0.12
55 38 0.46
56 3 0.04
57 24 0.29
58 8 0.10
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.25
Consensus pattern (57 bp):
ATGGCACTAAGTGTGCGAGCTGGAAATATATGGCACTAAGTGTGCGAGCTCGGAGAT
Found at i:63238059 original size:28 final size:28
Alignment explanation
Indices: 63237994--63238094 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
63237984 ATAGTGAATC
*
63237994 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
63238023 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
63238051 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
63238081 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63238095 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:63243924 original size:8 final size:8
Alignment explanation
Indices: 63243906--63243936 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
63243896 TAAGAAATTA
63243906 ATGAAATAT
1 ATGAAA-AT
63243915 ATGAAAAT
1 ATGAAAAT
63243923 ATGAAAAT
1 ATGAAAAT
63243931 ATGAAA
1 ATGAAA
63243937 TTGGGACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 16 0.73
9 6 0.27
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (8 bp):
ATGAAAAT
Found at i:63244593 original size:18 final size:18
Alignment explanation
Indices: 63244553--63244609 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
63244543 TCTCTTTTCT
*
63244553 AATCATCCCTCATCCCTC
1 AATCATCCCTCATCACTC
*
63244571 AATCATCCCTCACTCATTC
1 AATCATCCCTCA-TCACTC
* *
63244590 -ATCATTCTCTCATCTCTC
1 AATCA-TCCCTCATCACTC
63244608 AA
1 AA
63244610 CTCACTTATC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 20 0.65
19 11 0.35
ACGTcount: A:0.25, C:0.42, G:0.00, T:0.33
Consensus pattern (18 bp):
AATCATCCCTCATCACTC
Found at i:63245949 original size:28 final size:27
Alignment explanation
Indices: 63245914--63245979 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 27
63245904 ATTGTGACAG
*
63245914 AGCCACCAAATACAGATATTTATGGTAGT
1 AGCCACCAAAT-CAGATATTTATGGCA-T
*
63245943 -GCCACCAGAATCAGATATTTGTGGCAT
1 AGCCACCA-AATCAGATATTTATGGCAT
63245970 AGCCACCAAA
1 AGCCACCAAA
63245980 ACTCTTCCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 3 0.09
28 27 0.82
29 3 0.09
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (27 bp):
AGCCACCAAATCAGATATTTATGGCAT
Found at i:63254071 original size:28 final size:28
Alignment explanation
Indices: 63254020--63254128 Score: 157
Period size: 28 Copynumber: 3.9 Consensus size: 28
63254010 TGGCTGCTAG
* *
63254020 AACAGATA-TTGTGACAGAGTCACCAGA
1 AACAGATATTTGTGGCAGAGCCACCAGA
*
63254047 AACAGATATTTGTGGCAGTGCCACCAGA
1 AACAGATATTTGTGGCAGAGCCACCAGA
**
63254075 ATGAGATATTTGTGGCAGAGCCACCAGA
1 AACAGATATTTGTGGCAGAGCCACCAGA
*
63254103 AACAGATATTTGTGGCATAGCCACCA
1 AACAGATATTTGTGGCAGAGCCACCA
63254129 AAATGCTTCT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 8 0.11
28 64 0.89
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (28 bp):
AACAGATATTTGTGGCAGAGCCACCAGA
Found at i:63256007 original size:40 final size:40
Alignment explanation
Indices: 63255839--63256018 Score: 143
Period size: 40 Copynumber: 4.5 Consensus size: 40
63255829 TCGAATGGTG
* * * * *
63255839 TCCGGGCTAAGTCCCGAAGTCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAATTCCCGAAGGCATTCGTGCGAA-TGACTAAA
* * * *
63255880 TCCGGG-TCAATTTCCGAAGGCATTCGTGCGAGTTACCAAA
1 TCCGGGCT-AATTCCCGAAGGCATTCGTGCGAATGACTAAA
* * * * * *
63255920 ACCGGGTTAAGTCCCGAATGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAATTCCCGAAGGCATTCGTGCGAATGACTAAA
*
63255960 TCTGGGCTAATTCCCGAAGGCAATT-GTGCGAATGACTATAA
1 TCCGGGCTAATTCCCGAAGGC-ATTCGTGCGAATGACTA-AA
63256001 -CCGGGCT-ATGTCCCGAAG
1 TCCGGGCTAAT-TCCCGAAG
63256019 ACAATCGAGC
Statistics
Matches: 112, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
39 2 0.02
40 81 0.72
41 29 0.26
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAATTCCCGAAGGCATTCGTGCGAATGACTAAA
Found at i:63256031 original size:80 final size:80
Alignment explanation
Indices: 63255874--63256032 Score: 180
Period size: 80 Copynumber: 2.0 Consensus size: 80
63255864 GTGCTAAGTG
* * * *
63255874 ACTAAATCCGGGTCAATTTCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAT
1 ACTAAATCCGGGTCAATTCCCGAAGGCATTCGTGCGAATGACCAAAACCGGGCTAAGTCCCGAAT
* *
63255939 GCATTCGTGCGAGTT
66 GCAATCGAGCGAGTT
* * * *
63255954 ACTAAATCTGGG-CTAATTCCCGAAGGCAATT-GTGCGAATGACTATAACCGGGCTATGTCCCGA
1 ACTAAATCCGGGTC-AATTCCCGAAGGC-ATTCGTGCGAATGACCAAAACCGGGCTAAGTCCCGA
63256017 A-GACAATCGAGCGAGT
64 ATG-CAATCGAGCGAGT
63256033 CGCTATATCC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
79 2 0.03
80 61 0.92
81 3 0.05
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.23
Consensus pattern (80 bp):
ACTAAATCCGGGTCAATTCCCGAAGGCATTCGTGCGAATGACCAAAACCGGGCTAAGTCCCGAAT
GCAATCGAGCGAGTT
Found at i:63262795 original size:40 final size:40
Alignment explanation
Indices: 63262694--63262873 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 40
63262684 TCGAATGGTG
* * * *
63262694 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * * *
63262735 TCCTGGTCAATTCCCGAAGGCATTCGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
*
63262775 ACCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * * * *
63262815 TCCGGGCTAATTCTCAAAGGCAATT-GTGCAAATCACTATAA
1 TCCGGGTTAAGTCCCGAAGGC-ATTCGTGCAAGTTACTA-AA
* *
63262856 -CCGGGCTATGTCCCGAAG
1 TCCGGGTTAAGTCCCGAAG
63262874 ACAATCGAGC
Statistics
Matches: 111, Mismatches: 26, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
40 83 0.75
41 28 0.25
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:63262858 original size:80 final size:81
Alignment explanation
Indices: 63262695--63262873 Score: 202
Period size: 80 Copynumber: 2.2 Consensus size: 81
63262685 CGAATGGTGT
* * * *
63262695 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCTGGTCAATTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCATTC
* * *
63262760 GTGCGAGTTACCAAAA
66 GTGCAAATCACCAAAA
* * *
63262776 CCGGGTTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAATCCGGG-CTAATTCTCAAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AATTCCCAAAGGC-AT
* *
63262839 T-GTGCAAATCACTATAA
64 TCGTGCAAATCACCAAAA
*
63262856 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63262874 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 1 0.01
80 53 0.65
81 28 0.34
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAATTCCCAAAGGCATTC
GTGCAAATCACCAAAA
Found at i:63270015 original size:40 final size:40
Alignment explanation
Indices: 63269941--63270162 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
63269931 AACCCAAGTA
* * * *
63269941 CCTTCAGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
63269980 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
63270020 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
63270060 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
63270100 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
63270140 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
63270163 CATTCAAATA
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 11 0.07
40 152 0.92
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:63273532 original size:42 final size:42
Alignment explanation
Indices: 63273420--63273574 Score: 181
Period size: 42 Copynumber: 3.7 Consensus size: 42
63273410 TACCATACCA
*
63273420 ATGCCATATCTC-AGATATGGTCTTACATCG-AATCTTATATCG
1 ATGCCATATC-CAAGATATGGTCTTACA-CGAAATCTCATATCG
* * * *
63273462 ATGTCAATAGCCCAA-CTATGGTCTTACACGAAATCTCACATCG
1 ATG-CCATA-TCCAAGATATGGTCTTACACGAAATCTCATATCG
* *
63273505 ATGCCATATCCAAGATATGGTCTTACACGAAGTCTCATATCA
1 ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCG
*
63273547 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCAAGATATGGTCTTACAC
63273575 ATAATCTTAG
Statistics
Matches: 96, Mismatches: 12, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
41 4 0.04
42 60 0.62
43 30 0.31
44 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCAAGATATGGTCTTACACGAAATCTCATATCG
Found at i:63274179 original size:20 final size:20
Alignment explanation
Indices: 63274141--63274179 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
63274131 TGTTTCTTTA
*
63274141 ACCATAAACATGCATAATAT
1 ACCATAAACATGCAAAATAT
63274161 ACCATTAAACAT-CAAAATA
1 ACCA-TAAACATGCAAAATA
63274180 CACAAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.21, G:0.03, T:0.23
Consensus pattern (20 bp):
ACCATAAACATGCAAAATAT
Found at i:63286901 original size:27 final size:26
Alignment explanation
Indices: 63286857--63286907 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
63286847 CTCGCTGTAA
*
63286857 TCTGGTGGCCTCGCCACATATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
63286884 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
63286908 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.27, G:0.18, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:63286956 original size:2 final size:2
Alignment explanation
Indices: 63286951--63286978 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
63286941 ACACACACAC
63286951 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63286979 CTGTTCTGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63287190 original size:8 final size:8
Alignment explanation
Indices: 63287177--63287207 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
63287167 TCTGTATCTG
63287177 CTATGGGC
1 CTATGGGC
63287185 CTATGGGC
1 CTATGGGC
63287193 CTATGGGC
1 CTATGGGC
63287201 CTATGGG
1 CTATGGG
63287208 TTTTATTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.13, C:0.23, G:0.39, T:0.26
Consensus pattern (8 bp):
CTATGGGC
Found at i:63290434 original size:30 final size:30
Alignment explanation
Indices: 63290398--63290459 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
63290388 AAATCAGAAG
63290398 TATGACCCCTAGGCCGAATTCATGAGTGCC
1 TATGACCCCTAGGCCGAATTCATGAGTGCC
63290428 TATGACCCCTAGGCCGAATTCATGAGTGCC
1 TATGACCCCTAGGCCGAATTCATGAGTGCC
63290458 TA
1 TA
63290460 AAGTCAACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (30 bp):
TATGACCCCTAGGCCGAATTCATGAGTGCC
Found at i:63304884 original size:30 final size:30
Alignment explanation
Indices: 63304848--63304906 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
63304838 GCTGCTGTTC
* *
63304848 AATACTGTTTTAATGTTAATTTCAGTTTTA
1 AATACTGTTTTAATGCTAATTTCAATTTTA
63304878 AATACTGTTTTAATGCTAATTTCAATTTT
1 AATACTGTTTTAATGCTAATTTCAATTTT
63304907 TCATGATTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.53
Consensus pattern (30 bp):
AATACTGTTTTAATGCTAATTTCAATTTTA
Found at i:63305746 original size:55 final size:54
Alignment explanation
Indices: 63305672--63305809 Score: 152
Period size: 55 Copynumber: 2.5 Consensus size: 54
63305662 GAACTCAGTG
* * *
63305672 ATGCCACACCTTGGAATGGTCTTACATG-GGACCTTTACCTTATAGTGACACATCA
1 ATGCCATACCTTGGCATGGTCTTACATGAGGACC-TTACCTTATAGAG-CACATCA
** *** * **
63305727 ATGCCATGTCTTGGCATGGTCTTACATGATTTCCTTGCCTTATAGAGCTTATCA
1 ATGCCATACCTTGGCATGGTCTTACATGAGGACCTTACCTTATAGAGCACATCA
63305781 ATGCCATACCTTGGCATGGTCTTACATGA
1 ATGCCATACCTTGGCATGGTCTTACATGA
63305810 TATCCTTATC
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
54 32 0.46
55 35 0.51
56 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (54 bp):
ATGCCATACCTTGGCATGGTCTTACATGAGGACCTTACCTTATAGAGCACATCA
Found at i:63305852 original size:47 final size:47
Alignment explanation
Indices: 63305795--63305916 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
63305785 CATACCTTGG
*
63305795 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGCTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGCTCCAAA
* * * * *
63305842 CATGGCCTTACATGGCATCCTTGTCTTACCAAATGCCATGTTCGAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGCTCCAAA
* *
63305889 CATGGTCTTACATGGTATCTTTCTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
63305917 GTGCCAATGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.34
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGCTCCAAA
Found at i:63305995 original size:47 final size:47
Alignment explanation
Indices: 63305931--63306052 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 47
63305921 CAATGGCACA
* * * *
63305931 TCTTGATATGGTCTTACATGGATTCCTTAATCAATGCCGATGCCATG
1 TCTTGACATGGTCTTACATGGATTCCTTAAGCAATACCAATGCCATG
* * **
63305978 TCTTGACATTGTCTTACACGGGA-TCCTT--GCCTTACCAATGCCATG
1 TCTTGACATGGTCTTACA-TGGATTCCTTAAGCAATACCAATGCCATG
63306023 TCTTGACATGGTCTTACATGG-TATCCTTAA
1 TCTTGACATGGTCTTACATGGAT-TCCTTAA
63306053 CCGTCAATTC
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
44 2 0.03
45 34 0.57
47 21 0.35
48 3 0.05
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (47 bp):
TCTTGACATGGTCTTACATGGATTCCTTAAGCAATACCAATGCCATG
Found at i:63311170 original size:18 final size:17
Alignment explanation
Indices: 63311147--63311186 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
63311137 TATTTTATGC
63311147 AAAAGAAAAGAAAAAAA
1 AAAAGAAAAGAAAAAAA
63311164 TAAAAG-AAAGAAAAAAA
1 -AAAAGAAAAGAAAAAAA
63311181 AAAAGA
1 AAAAGA
63311187 GTTAGCTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.24
17 11 0.52
18 5 0.24
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAGAAAAAAA
Found at i:63312590 original size:40 final size:40
Alignment explanation
Indices: 63312535--63312739 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
63312525 ATGATACCCA
* *
63312535 GGCTAAG-CCCAGAAGGCATTTATGCTAG-TGATTATATCCG
1 GGCTAAGACCC-GAAGGCATTTGTGCGAGTTG-TTATATCCG
*
63312575 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
*
63312615 GGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
*
63312655 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
* * ** *
63312695 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
63312734 GGCTAA
1 GGCTAA
63312740 ATTCTGAAGA
Statistics
Matches: 149, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 5 0.03
40 139 0.93
41 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
Found at i:63320690 original size:40 final size:40
Alignment explanation
Indices: 63320632--63320831 Score: 253
Period size: 40 Copynumber: 5.0 Consensus size: 40
63320622 TGAATGATAC
*
63320632 CCGGGCTAAG-CCCGGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCC-GAAGGCATTTGTGCTAGTTG-TTATAT
*
63320672 CCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTTGTTATAT
* *
63320712 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * *
63320752 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
63320792 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
63320832 TCGACTAAAT
Statistics
Matches: 141, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 5 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:63320829 original size:80 final size:80
Alignment explanation
Indices: 63320628--63320831 Score: 311
Period size: 80 Copynumber: 2.5 Consensus size: 80
63320618 CATTTGAATG
* * *
63320628 ATACCCGGGCTAAG-CCCGGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCC-GAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGC
*
63320692 ATTTGTGTGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
63320708 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
63320773 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
63320788 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATAT
63320832 TCGACTAAAT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
80 108 0.97
81 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:63323918 original size:54 final size:54
Alignment explanation
Indices: 63323744--63323940 Score: 209
Period size: 55 Copynumber: 3.6 Consensus size: 54
63323734 AACTTACCAT
* * * * *
63323744 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTAACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAGCTAATCAA
* * * * * *
63323797 TGCCATGCCTTCGCATGGTCGTACATGGGA-CCTTTTCCTTATAGTGACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTATAGAG-CTAATCAA
* * *
63323852 TGCCATGTCTTGGCATGGTCTTACGTGGTATCCTTGCCTTATAGAGCTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAGCTAATCAA
* * *
63323906 TTCCATGCCTTGGTATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
63323941 ATCTTACCAA
Statistics
Matches: 116, Mismatches: 24, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
52 2 0.02
53 32 0.28
54 38 0.33
55 42 0.36
56 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAGCTAATCAA
Found at i:63323972 original size:47 final size:47
Alignment explanation
Indices: 63323920--63324040 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
63323910 ATGCCTTGGT
*
63323920 ATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAAC
* * *
63323967 ATGGTCTTACATGGCATCCTTGTCTTACTAAATGCCATGTTCCAAAC
1 ATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAAC
*
63324014 ATGGTCTTACATGGTATCCTTCTCTTA
1 ATGGTCTTACATGGTATCCTTATCTTA
63324041 GTGCCAATGC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (47 bp):
ATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAAC
Found at i:63334564 original size:24 final size:24
Alignment explanation
Indices: 63334532--63334618 Score: 165
Period size: 24 Copynumber: 3.6 Consensus size: 24
63334522 AATCTCAAAT
63334532 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
63334556 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
63334580 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
63334604 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
63334619 ACATAATAAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:63334584 original size:48 final size:48
Alignment explanation
Indices: 63334532--63334640 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
63334522 AATCTCAAAT
** *
63334532 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
63334580 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
63334628 GCACTATGTGTGC
1 GCACTATGTGTGC
63334641 AACGTTTGGT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:63334631 original size:24 final size:24
Alignment explanation
Indices: 63334532--63334640 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
63334522 AATCTCAAAT
*
63334532 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
63334556 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
63334580 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
63334604 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
63334628 GCACTATGTGTGC
1 GCACTATGTGTGC
63334641 AACGTTTGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 73 0.94
25 5 0.06
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:63341447 original size:25 final size:25
Alignment explanation
Indices: 63341413--63341470 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
63341403 CTACAGGTAT
63341413 TTACATGAAGTACATGGAAGTGATG
1 TTACATGAAGTACATGGAAGTGATG
63341438 TTACATGAAGTACATGGAAGTGATG
1 TTACATGAAGTACATGGAAGTGATG
63341463 TTACATGA
1 TTACATGA
63341471 TATATTGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (25 bp):
TTACATGAAGTACATGGAAGTGATG
Found at i:63342078 original size:43 final size:43
Alignment explanation
Indices: 63342025--63342125 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
63342015 ACACTAGGGG
* *
63342025 ACACATGGCCGTGTCACCTGACCATGTGTCAGACACGGCTAAA
1 ACACACGGCCGTGTCACCTGACCATGTGTCAGACAAGGCTAAA
* *
63342068 ACACACGGCCGTGTCACCTGACCATGTGTCAGACAAGGCTGAG
1 ACACACGGCCGTGTCACCTGACCATGTGTCAGACAAGGCTAAA
*
63342111 ACACACGCCCGTGTC
1 ACACACGGCCGTGTC
63342126 TCTTCTCGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.26, C:0.33, G:0.25, T:0.17
Consensus pattern (43 bp):
ACACACGGCCGTGTCACCTGACCATGTGTCAGACAAGGCTAAA
Found at i:63349441 original size:48 final size:48
Alignment explanation
Indices: 63349303--63349443 Score: 194
Period size: 48 Copynumber: 2.9 Consensus size: 48
63349293 TATACACATC
** * *
63349303 TCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCATGGC
1 TCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATATAGA
* *
63349351 TCATACATATTTCACATTAGCC-TTTCGACTTTACCACATATATATATA
1 TCATACATATTTCACATTAGCCATTT-GGCTTTACCACATATATATAGA
* *
63349399 TCATACGTATTTTACATTAGCCATTTGGCTTTACCACATATATAT
1 TCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATAT
63349444 CTCTTGTACA
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
47 3 0.04
48 76 0.93
49 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.39
Consensus pattern (48 bp):
TCATACATATTTCACATTAGCCATTTGGCTTTACCACATATATATAGA
Found at i:63350760 original size:26 final size:27
Alignment explanation
Indices: 63350715--63350767 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
63350705 TTAAATTCTG
*
63350715 GCATGCATTCGAACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
63350742 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
63350768 CTAGCTGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:63355640 original size:17 final size:16
Alignment explanation
Indices: 63355607--63355645 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
63355597 AATTTATCAT
63355607 TTAATTACCTATTTAA
1 TTAATTACCTATTTAA
63355623 TTAATTAACCT-TTATAA
1 TTAATT-ACCTATT-TAA
63355640 TTAATT
1 TTAATT
63355646 CAAATTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATTACCTATTTAA
Found at i:63367620 original size:40 final size:40
Alignment explanation
Indices: 63367576--63367763 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
63367566 GCTACTTGCT
63367576 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63367616 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
63367656 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
63367696 CAAATGCCTTCGGG-CTTAGCCCGGAGT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
*
63367735 CAAATGCCTTCGGGACTTAGCCGGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63367764 CATCCAAATA
Statistics
Matches: 138, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 35 0.25
40 103 0.75
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63367754 original size:119 final size:119
Alignment explanation
Indices: 63367543--63367763 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
63367533 AAACCAAGTA
* * *
63367543 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGT
*
63367608 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
63367662 CCTTCGGGACTTAGCCCGGATATAG-TAACTTGCACAAATGCCTTCGGG-CTTAGCCCGGAGT-T
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTTGCACAAATGCCTTCGGGACTTAGCCCGG-GTAT
* *
63367724 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCGGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63367764 CATCCAAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
119 61 0.66
120 31 0.34
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTTGCACAAATGCCTTCGGGACTTAGCCCGGGTATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:63371793 original size:46 final size:45
Alignment explanation
Indices: 63371743--63371915 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
63371733 TGGTTGAGCA
*
63371743 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
63371789 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
* * *
63371834 CATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATATGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGAT-GGAATG
* *
63371882 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTA
63371916 GGGCGGGTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:63371899 original size:93 final size:93
Alignment explanation
Indices: 63371740--63371910 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
63371730 GGATGGTTGA
* * * * *
63371740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
63371805 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
63371833 GCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATATGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
63371898 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63371911 ACTTAGGGCG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63380310 original size:16 final size:15
Alignment explanation
Indices: 63380283--63380316 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
63380273 ATAACTAGTA
*
63380283 TATAATTATATTTAT
1 TATAATTATATTAAT
63380298 TATAATATATATTAAT
1 TATAAT-TATATTAAT
63380314 TAT
1 TAT
63380317 TATCAACTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:63380992 original size:17 final size:18
Alignment explanation
Indices: 63380956--63380998 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
63380946 TTTCTCCTAA
**
63380956 ATTTAATTTTATTTAATT
1 ATTTAATTTTATCAAATT
63380974 ATTTAATTTT-TCAAATT
1 ATTTAATTTTATCAAATT
*
63380991 ATTGAATT
1 ATTTAATT
63380999 ATTAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTAATTTTATCAAATT
Found at i:63386162 original size:19 final size:20
Alignment explanation
Indices: 63386124--63386162 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63386114 TCACCACTCT
*
63386124 ATTGTTATTAGGTATTGAATA
1 ATTGTTATTA-GTATGGAATA
63386145 ATTGTTATT-GTATGGAAT
1 ATTGTTATTAGTATGGAAT
63386163 GTGTGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.49
Consensus pattern (20 bp):
ATTGTTATTAGTATGGAATA
Found at i:63386339 original size:48 final size:48
Alignment explanation
Indices: 63386268--63386504 Score: 267
Period size: 48 Copynumber: 4.9 Consensus size: 48
63386258 TAGGGTTATT
* *
63386268 TGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATA
* *** ***
63386316 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCTATATTTTTA
1 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATA
* * *
63386364 TGAGAGGCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATA
1 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATA
* * * * ** * *
63386412 TGTAAGCCAGTGGAAGACCATGTCTGGGACATGGAAAAGGCAACGATACA
1 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC-A-ATA
*
63386462 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
1 TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
63386505 TTTACCCTTT
Statistics
Matches: 149, Mismatches: 38, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
48 111 0.74
49 1 0.01
50 37 0.25
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
TGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCAATA
Found at i:63386444 original size:96 final size:97
Alignment explanation
Indices: 63386271--63386502 Score: 308
Period size: 96 Copynumber: 2.4 Consensus size: 97
63386261 GGTTATTTGT
* * *
63386271 GAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGTAAGCCAGTGGAAGACCA
* * * ** **
63386336 TGTTTGGAACATGG-CA-TCTATA-TTTTTATGA
66 TGTCTGGAACATGGAAAGGC-A-ACGATACATGA
*
63386367 GAGGCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGTAAGCCAGTGGAAGACCA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGTAAGCCAGTGGAAGACCA
*
63386432 TGTCTGGGACATGGAAAAGGCAACGATACATGA
66 TGTCTGGAACATGG-AAAGGCAACGATACATGA
63386465 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
63386503 ATTTTACCCT
Statistics
Matches: 119, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
96 73 0.61
97 1 0.01
98 44 0.37
99 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (97 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCAATATGTAAGCCAGTGGAAGACCA
TGTCTGGAACATGGAAAGGCAACGATACATGA
Found at i:63392779 original size:23 final size:23
Alignment explanation
Indices: 63392749--63392797 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
63392739 TTGCCATTTG
*
63392749 ATGAATTTGATGTTATTTTGGGT
1 ATGAATTTGATGTTATTTTAGGT
63392772 ATGAATTTGATGTTATTTTAGGT
1 ATGAATTTGATGTTATTTTAGGT
63392795 ATG
1 ATG
63392798 GATTGGTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (23 bp):
ATGAATTTGATGTTATTTTAGGT
Found at i:63396764 original size:30 final size:30
Alignment explanation
Indices: 63396728--63396787 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
63396718 TTCCCGAGCC
* *
63396728 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
* *
63396758 TAGGGGCAAAAATATAATTTTGCCAAAGTT
1 TAGGGGCAAAAATATAATTATGCAAAAGTT
63396788 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTATGCAAAAGTT
Found at i:63413804 original size:21 final size:21
Alignment explanation
Indices: 63413763--63413804 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
63413753 AAGTTGTTTA
* *
63413763 TCTATCAATAATTTTTCATTT
1 TCTATCAATAATTTCTAATTT
63413784 TCTA-CAATAAATTTCTAATTT
1 TCTATCAAT-AATTTCTAATTT
63413805 CCAGCATAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.33, C:0.14, G:0.00, T:0.52
Consensus pattern (21 bp):
TCTATCAATAATTTCTAATTT
Found at i:63413850 original size:30 final size:30
Alignment explanation
Indices: 63413815--63413876 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
63413805 CCAGCATAAC
63413815 ACATCCATGACCCATTTTCATACCTTGATA
1 ACATCCATGACCCATTTTCATACCTTGATA
*
63413845 ACATCCATGACCCATTTTTATACCTTGATA
1 ACATCCATGACCCATTTTCATACCTTGATA
63413875 AC
1 AC
63413877 TTTTCAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (30 bp):
ACATCCATGACCCATTTTCATACCTTGATA
Found at i:63416330 original size:104 final size:104
Alignment explanation
Indices: 63416150--63416458 Score: 447
Period size: 104 Copynumber: 3.0 Consensus size: 104
63416140 CACAAACCTA
* * * *
63416150 TGCTCCCAACTGATGTTTAAAGGTTAGCTAAGTTATACTCACAACCTTCATTTATTTGAGTTAGT
1 TGCTCCCAGCTGATGTTTAAAGTTTAGCTGAGTTATACTCACAACCTTCATTTATTTGAGTTAGC
**
63416215 TGAGTTAAGCTCACTACTTCGAAACAACTCATGGACTTT
66 TGAGTTAAGCTCACTACTTCGAAACAACTCACAGACTTT
* * *
63416254 TGCTCCCAGTTGATGTTTAAAGTTTAACTGAGTTACACTCACAACCTTCATTTATTTGAGTTAGC
1 TGCTCCCAGCTGATGTTTAAAGTTTAGCTGAGTTATACTCACAACCTTCATTTATTTGAGTTAGC
* * *
63416319 TAAGTTAAGCTCACTACTTCAAAACAACTCGCAGACTTT
66 TGAGTTAAGCTCACTACTTCGAAACAACTCACAGACTTT
* *
63416358 TTCTCCCAGCTGATGTTTAAAGTTTAGCTGAGTTATATTCACAACCTTCATTTATTTGAGTTAGC
1 TGCTCCCAGCTGATGTTTAAAGTTTAGCTGAGTTATACTCACAACCTTCATTTATTTGAGTTAGC
** * * *
63416423 TGAGTTAAGCTTGCTACTCCGAAACAGCTCGCAGAC
66 TGAGTTAAGCTCACTACTTCGAAACAACTCACAGAC
63416459 CTACACTTCC
Statistics
Matches: 182, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
104 182 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (104 bp):
TGCTCCCAGCTGATGTTTAAAGTTTAGCTGAGTTATACTCACAACCTTCATTTATTTGAGTTAGC
TGAGTTAAGCTCACTACTTCGAAACAACTCACAGACTTT
Found at i:63416809 original size:214 final size:214
Alignment explanation
Indices: 63416440--63416868 Score: 786
Period size: 214 Copynumber: 2.0 Consensus size: 214
63416430 AGCTTGCTAC
63416440 TCCGAAACAGCTCGCAGACCTACACTTCCAGCTAATAAACTTCAACACAACTCGCAGTTGATACT
1 TCCGAAACAGCTCGCAGACCTACACTTCCAGCTAATAAACTTCAACACAACTCGCAGTTGATACT
*
63416505 TAAAGGTTAGTTGAGTTATACTCACAACTTTCATTTATTTGAGTTGGCTAATTTAAACTCACTAC
66 TAAAGGTTAGTTGAGTTATACTCACAACTTTCATTTATTTGAGTTGGCTAATGTAAACTCACTAC
* *
63416570 TCCAAAATAACTCACGGCCTACGCTCCCAGTTGATAAACTTCAATATTGTTCGCGAACCTACGCT
131 TCCAAAACAACTCACGGCCTACGCTCCCAGTTGAAAAACTTCAATATTGTTCGCGAACCTACGCT
63416635 CCCAGTTGATGTTTAAAGG
196 CCCAGTTGATGTTTAAAGG
* * * *
63416654 TCCGAAATAGCTCGCAGACCTACACTTCCAGCTAATAAACTTCACCACAGCTCGCAGTTGATGCT
1 TCCGAAACAGCTCGCAGACCTACACTTCCAGCTAATAAACTTCAACACAACTCGCAGTTGATACT
*
63416719 TAAAGGTTAGTTGAGTTATACTCACAACTTTCATTTATTTGAGTTGGCTGATGTAAACTCACTAC
66 TAAAGGTTAGTTGAGTTATACTCACAACTTTCATTTATTTGAGTTGGCTAATGTAAACTCACTAC
63416784 TCCAAAACAACTCACGGCCTACGCTCCCAGTTGAAAAACTTCAATATTGTTCGCGAACCTACGCT
131 TCCAAAACAACTCACGGCCTACGCTCCCAGTTGAAAAACTTCAATATTGTTCGCGAACCTACGCT
63416849 CCCAGTTGATGTTTAAAGG
196 CCCAGTTGATGTTTAAAGG
63416868 T
1 T
63416869 TAGTTGAGTA
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 207 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (214 bp):
TCCGAAACAGCTCGCAGACCTACACTTCCAGCTAATAAACTTCAACACAACTCGCAGTTGATACT
TAAAGGTTAGTTGAGTTATACTCACAACTTTCATTTATTTGAGTTGGCTAATGTAAACTCACTAC
TCCAAAACAACTCACGGCCTACGCTCCCAGTTGAAAAACTTCAATATTGTTCGCGAACCTACGCT
CCCAGTTGATGTTTAAAGG
Found at i:63417923 original size:46 final size:46
Alignment explanation
Indices: 63417870--63418044 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
63417860 GTTTGGGCAC
*
63417870 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGT
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGT
* *** * * ** *
63417916 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCAT
1 CCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGT
* * *
63417963 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-
1 CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGT
* *
63418008 CCCAAGCTCATTGAGTTGAGTCCGAGCTCACTTATGG
1 CCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGG
63418045 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
45 3 0.03
46 63 0.62
47 35 0.35
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (46 bp):
CCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGT
Found at i:63421030 original size:14 final size:15
Alignment explanation
Indices: 63420981--63421030 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
63420971 GTATCTTGGG
*
63420981 TTTCTTTATACTGGA
1 TTTCTTTATTCTGGA
*
63420996 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
63421011 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
63421025 TTTCTT
1 TTTCTT
63421031 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.12, C:0.16, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:63427032 original size:95 final size:95
Alignment explanation
Indices: 63426755--63427073 Score: 354
Period size: 95 Copynumber: 3.3 Consensus size: 95
63426745 TGAAATCCCA
* * * * * * * *
63426755 TGTAAGACCATGTCTGAGACATGGCATCAGCATCCGAGATGA-GAGCCAGTGTAAGACCATGTTT
1 TGTAAGACCATATCTGGGACATGGCATCGGCGT-TGATAT-ATGTGCCAATGTAAGACCAT-TTT
* * * *
63426819 AGGACATGGCATCGGCGTTGATATGTGTACCAC
63 GGGACATGGCATCGGTGTTGATATGTGTGCCAG
* * * * *
63426852 TGTAAGACCATATCTGGGACATGGCATCGGTGTTGATATGTGTGCCACTATAAGACCATGTATGG
1 TGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATATGTGCCAATGTAAGACCAT-TTTGG
63426917 GACATGGCATCGGTGTTGATATGTGTGCCAG
65 GACATGGCATCGGTGTTGATATGTGTGCCAG
* * *
63426948 TGTAAGACCATCTCTGGAACATGGCAT-TGCGTTGATATATGTGCCAATGTAAGACCATTTCTGG
1 TGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATATGTGCCAATGTAAGACCATTT-TGG
* * *
63427012 GACATGGCATCTGTGATGATATGTGTGCTAG
65 GACATGGCATCGGTGTTGATATGTGTGCCAG
* *
63427043 TGTAAGACCATGTTTGGGACATGGCATCGGC
1 TGTAAGACCATATCTGGGACATGGCATCGGC
63427074 ACCAATATGA
Statistics
Matches: 188, Mismatches: 31, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
94 1 0.01
95 81 0.43
96 78 0.41
97 28 0.15
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (95 bp):
TGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATATGTGCCAATGTAAGACCATTTTGGG
ACATGGCATCGGTGTTGATATGTGTGCCAG
Found at i:63427082 original size:48 final size:48
Alignment explanation
Indices: 63426755--63427073 Score: 370
Period size: 48 Copynumber: 6.6 Consensus size: 48
63426745 TGAAATCCCA
* * * * * * *
63426755 TGTAAGACCATGTCTGAGACATGGCATCAGCATCCGAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGT-TGATATGTGTGCCAG
* * * *
63426804 TGTAAGACCATGTTTAGGACATGGCATCGGCGTTGATATGTGTACCAC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* * *
63426852 TGTAAGACCATATCTGGGACATGGCATCGGTGTTGATATGTGTGCCAC
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* * *
63426900 TATAAGACCATGTATGGGACATGGCATCGGTGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* * * * *
63426948 TGTAAGACCATCTCTGGAACATGGCAT-TGCGTTGATATATGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* * * * *
63426995 TGTAAGACCATTTCTGGGACATGGCATCTGTGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
*
63427043 TGTAAGACCATGTTTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
63427074 ACCAATATGA
Statistics
Matches: 230, Mismatches: 39, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
47 41 0.18
48 161 0.70
49 28 0.12
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
Found at i:63427082 original size:143 final size:144
Alignment explanation
Indices: 63426755--63427085 Score: 414
Period size: 143 Copynumber: 2.3 Consensus size: 144
63426745 TGAAATCCCA
* * * * * *
63426755 TGTAAGACCATGTCTGAGACATGGCATCAGCATCCGAGATGAGAGCCAGTGTAAGACCATGTTTA
1 TGTAAGACCATGTATGGGACATGGCATCGGCA-CCGATATGAGAGCCAGTGTAAGACCATCTCTA
* * *
63426820 GGACATGGCATCGGCGTTGATATGTGTACCACTGTAAGACCATATCTGGGACATGGCATCGGTGT
65 GGACATGGCATCGGCGTTGATATATGTACCAATGTAAGACCATATCTGGGACATGGCATCGGTGA
63426885 TGATATGTGTGCCAC
130 TGATATGTGTGCCAC
* **** * *
63426900 TATAAGACCATGTATGGGACATGGCATCGGTGTTGATATGTGTGCCAGTGTAAGACCATCTCT-G
1 TGTAAGACCATGTATGGGACATGGCATCGGCACCGATATGAGAGCCAGTGTAAGACCATCTCTAG
* * * *
63426964 GAACATGGCAT-TGCGTTGATATATGTGCCAATGTAAGACCATTTCTGGGACATGGCATCTGTGA
66 G-ACATGGCATCGGCGTTGATATATGTACCAATGTAAGACCATATCTGGGACATGGCATCGGTGA
* *
63427028 TGATATGTGTGCTAG
130 TGATATGTGTGCCAC
* *
63427043 TGTAAGACCATGTTTGGGACATGGCATCGGCACCAATATGAGA
1 TGTAAGACCATGTATGGGACATGGCATCGGCACCGATATGAGA
63427086 CTTCGTATAA
Statistics
Matches: 154, Mismatches: 31, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
143 95 0.62
144 33 0.21
145 26 0.17
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (144 bp):
TGTAAGACCATGTATGGGACATGGCATCGGCACCGATATGAGAGCCAGTGTAAGACCATCTCTAG
GACATGGCATCGGCGTTGATATATGTACCAATGTAAGACCATATCTGGGACATGGCATCGGTGAT
GATATGTGTGCCAC
Found at i:63428771 original size:28 final size:27
Alignment explanation
Indices: 63428708--63428777 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
63428698 ATAGTGAGTC
63428708 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
63428735 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
63428763 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63428778 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:63438584 original size:15 final size:15
Alignment explanation
Indices: 63438559--63438631 Score: 85
Period size: 15 Copynumber: 4.9 Consensus size: 15
63438549 GATATGACAT
*
63438559 GAAAACCAAGATAAA
1 GAAATCCAAGATAAA
*
63438574 GAAGTCCAAGATAAA
1 GAAATCCAAGATAAA
**
63438589 GAAATCTTAGATAAA
1 GAAATCCAAGATAAA
*
63438604 GAAATCCAAGAT-AC
1 GAAATCCAAGATAAA
63438618 GAAAATCCAAGATA
1 G-AAATCCAAGATA
63438632 CAATATCATA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
14 2 0.04
15 46 0.96
ACGTcount: A:0.56, C:0.14, G:0.15, T:0.15
Consensus pattern (15 bp):
GAAATCCAAGATAAA
Found at i:63448878 original size:46 final size:47
Alignment explanation
Indices: 63448772--63448893 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
63448762 TGTCTTCGAC
** * *
63448772 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
63448822 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
63448868 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
63448894 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:63453378 original size:20 final size:21
Alignment explanation
Indices: 63453345--63453383 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
63453335 CAATTCCAAT
*
63453345 TATTTTACACATTT-ACAACC
1 TATTTTACAAATTTCACAACC
*
63453365 TATTTTATAAATTTCACAA
1 TATTTTACAAATTTCACAA
63453384 AATGGTCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (21 bp):
TATTTTACAAATTTCACAACC
Found at i:63456971 original size:14 final size:14
Alignment explanation
Indices: 63456952--63456979 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63456942 TTATCCACTG
63456952 ACCAAACCCCTACC
1 ACCAAACCCCTACC
63456966 ACCAAACCCCTACC
1 ACCAAACCCCTACC
63456980 CCTTTAGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.57, G:0.00, T:0.07
Consensus pattern (14 bp):
ACCAAACCCCTACC
Found at i:63457984 original size:2 final size:2
Alignment explanation
Indices: 63457977--63458005 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
63457967 GAATTTAAAT
63457977 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63458006 GTTTTATGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63458251 original size:21 final size:21
Alignment explanation
Indices: 63458227--63458266 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63458217 TTTAAATTAT
*
63458227 TTTAATTCTT-TTTTTTTTAAA
1 TTTAA-TCTTCTTTTATTTAAA
63458248 TTTAATCTTCTTTTATTTA
1 TTTAATCTTCTTTTATTTA
63458267 TTTGCTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTAATCTTCTTTTATTTAAA
Found at i:63460954 original size:18 final size:17
Alignment explanation
Indices: 63460931--63461044 Score: 51
Period size: 18 Copynumber: 7.4 Consensus size: 17
63460921 CCACCACCAA
*
63460931 CTCCACTAGCCATACTT
1 CTCCACTAGCCACACTT
*
63460948 GCTCCACCA-CCA-AC-T
1 -CTCCACTAGCCACACTT
63460963 --CCACTAGCCACACTT
1 CTCCACTAGCCACACTT
*
63460978 ACTCCACT----AC-CTA
1 -CTCCACTAGCCACACTT
63460991 CTCCACTAGCCACACTT
1 CTCCACTAGCCACACTT
*
63461008 GCTCCACT----AC-CTA
1 -CTCCACTAGCCACACTT
63461021 CTCCACTAGCCACACTT
1 CTCCACTAGCCACACTT
63461038 GCTCCAC
1 -CTCCAC
63461045 CACCACTTGT
Statistics
Matches: 72, Mismatches: 6, Indels: 36
0.63 0.05 0.32
Matches are distributed among these distances:
12 19 0.26
13 7 0.10
14 6 0.08
15 2 0.03
16 6 0.08
17 7 0.10
18 25 0.35
ACGTcount: A:0.25, C:0.47, G:0.06, T:0.22
Consensus pattern (17 bp):
CTCCACTAGCCACACTT
Found at i:63460957 original size:30 final size:30
Alignment explanation
Indices: 63460921--63461049 Score: 204
Period size: 30 Copynumber: 4.3 Consensus size: 30
63460911 CTAGCCTTTG
*
63460921 CCACCACCAACTCCACTAGCCATACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
63460951 CCACCACCAACTCCACTAGCCACACTTACT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
63460981 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
63461011 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
63461041 CCACCACCA
1 CCACCACCA
63461050 CTTGTACCTA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 92 1.00
ACGTcount: A:0.26, C:0.49, G:0.05, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:63461610 original size:2 final size:2
Alignment explanation
Indices: 63461603--63461681 Score: 67
Period size: 2 Copynumber: 40.5 Consensus size: 2
63461593 CTATATTACG
* * * *
63461603 TA TA TA TA TA T- TA TA CTA T- TT TA TG TA TA TA TC TT TA -A TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
63461643 CTA TA T- TA TT TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63461682 TTACATGTTA
Statistics
Matches: 63, Mismatches: 8, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
1 4 0.06
2 55 0.87
3 4 0.06
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (2 bp):
TA
Found at i:63461621 original size:25 final size:25
Alignment explanation
Indices: 63461593--63461752 Score: 111
Period size: 25 Copynumber: 6.7 Consensus size: 25
63461583 ATTCTAAATT
*
63461593 CTATATTACGTATATATATATTATA
1 CTATATTATGTATATATATATTATA
* *
63461618 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATT-ATA
*
63461643 CTATATTATTTATATATATA-TATA
1 CTATATTATGTATATATATATTATA
* * * *
63461667 -TATA-TATATATATATTTA-CATG
1 CTATATTATGTATATATATATTATA
* *
63461689 TTATCTTATGTATATAT-T-TTA-A
1 CTATATTATGTATATATATATTATA
* * * * *
63461711 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATATATTATA
*
63461736 CTATATTATGTACATAT
1 CTATATTATGTATATAT
63461753 TTTTAATATT
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
22 29 0.27
23 10 0.09
24 18 0.17
25 51 0.47
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (25 bp):
CTATATTATGTATATATATATTATA
Found at i:63461714 original size:22 final size:22
Alignment explanation
Indices: 63461547--63461796 Score: 95
Period size: 25 Copynumber: 10.9 Consensus size: 22
63461537 ATTTCTTAAT
* *
63461547 ATTATATTATATATATTCTTTTA
1 ATTATATTATGTATA-TATTTTA
* * *
63461570 A-TATATTAGGTATAT-TCTAA
1 ATTATATTATGTATATATTTTA
*
63461590 ATTCTATATTACGTATATATATATTA
1 A-T-TATATTATGTATATAT-T-TTA
* *
63461616 TACTATTTTATGTATATATCTTTA
1 -ATTATATTATGTATATAT-TTTA
* *
63461640 ATACTATATTATTTATATA-TAT-
1 AT--TATATTATGTATATATTTTA
*
63461662 A-TATATATATATATATATATTTA
1 ATTATAT-TATGTATATAT-TTTA
*
63461685 CATGTTATCTTATGTATATATTTTA
1 -A--TTATATTATGTATATATTTTA
*
63461710 ATTATATTATGTATGTATTTTTTA
1 ATTATATTATGTA--TATATTTTA
* *
63461734 CACTATATTATGTACATATTTTTA
1 -ATTATATTATGTATATA-TTTTA
* * *
63461758 A-TATTATCACGTATTTATTTT-
1 ATTA-TATTATGTATATATTTTA
*
63461779 -TTATA-TATGTACATATTT
1 ATTATATTATGTATATATTT
63461797 ATGTAGTATT
Statistics
Matches: 172, Mismatches: 32, Indels: 50
0.68 0.13 0.20
Matches are distributed among these distances:
19 14 0.08
20 15 0.09
21 3 0.02
22 31 0.18
23 29 0.17
24 19 0.11
25 44 0.26
26 12 0.07
27 5 0.03
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (22 bp):
ATTATATTATGTATATATTTTA
Found at i:63461763 original size:20 final size:20
Alignment explanation
Indices: 63461738--63461796 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
63461728 TTTTTACACT
63461738 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
63461758 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
63461781 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
63461797 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:63461944 original size:8 final size:8
Alignment explanation
Indices: 63461908--63461945 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
63461898 TATTAATTAT
*
63461908 TATTCTAA
1 TATTTTAA
63461916 TATTCTT-A
1 TATT-TTAA
63461924 TATTTTAA
1 TATTTTAA
63461932 TATTTTAA
1 TATTTTAA
63461940 TATTTT
1 TATTTT
63461946 TCACATCACT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
7 2 0.07
8 24 0.89
9 1 0.04
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (8 bp):
TATTTTAA
Found at i:63467470 original size:40 final size:40
Alignment explanation
Indices: 63467411--63467603 Score: 206
Period size: 40 Copynumber: 4.8 Consensus size: 40
63467401 CAATTGAATG
* * * *
63467411 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
63467451 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63467491 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
63467531 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * *
63467571 CTATCTGGGCTAAGACCCGAAGGCATTCGTGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
63467604 TGTGGTTATA
Statistics
Matches: 129, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 129 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:63477320 original size:72 final size:73
Alignment explanation
Indices: 63477201--63477878 Score: 794
Period size: 72 Copynumber: 9.1 Consensus size: 73
63477191 ATGTTGTTAC
* **
63477201 TTCTGTTTTCAAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGT
63477266 AATTTCAAT
65 AATTTCAAT
* * *
63477275 TTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGT-
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
63477338 ATTTCCAAT
66 ATTT-CAAT
* ** * *
63477347 TTCTGTTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAG
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGCTGAG
*
63477410 GTATTTTCAAT
63 GTAATTTCAAT
*
63477421 TTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 TTCTGT-TTTC-AAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
63477486 GTAATTTCAAT
63 GTAATTTCAAT
* * * *
63477497 TTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATAAGTTGAGCCACAAGACACGTTGAGGTA
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
63477561 ATTTCAAT
66 ATTTCAAT
* * *
63477569 TTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTAAGGTA
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
*
63477633 TTTTCAAT
66 ATTTCAAT
*
63477641 TTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
1 TTCTG-TTTTC----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
* *
63477706 AAGTATTTTCAAT
61 AGGTAATTTCAAT
* ** * *
63477719 TTCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAG
1 TTC--TGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
63477784 GTAATTTCAAT
63 GTAATTTCAAT
* * * *** * *
63477795 TTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
1 TTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAG
*
63477860 GTATTTTCAAT
63 GTAATTTCAAT
63477871 TTC-GTTTT
1 TTCTGTTTT
63477879 TCAATTTCTG
Statistics
Matches: 535, Mismatches: 49, Indels: 39
0.86 0.08 0.06
Matches are distributed among these distances:
71 5 0.01
72 220 0.41
73 9 0.02
74 76 0.14
75 14 0.03
76 107 0.20
77 5 0.01
78 92 0.17
79 6 0.01
80 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (73 bp):
TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
ATTTCAAT
Done.