Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 202 of 318
Found at i:63477471 original size:150 final size:148
Alignment explanation
Indices: 63477201--63478091 Score: 822
Period size: 150 Copynumber: 5.8 Consensus size: 148
63477191 ATGTTGTTAC
* * *
63477201 TTCTGTTTTCAAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTC-GGGACACGCTGAGG
1 TTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGCACACGCTGAGG
* *
63477265 TAATTTCAATTTCTGTTTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGA
65 TATTTTCAATTTCTGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
*
63477327 CACGTTGAGGTATTTCCAAT
130 CACGCTGAGGTATTT-CAAT
* ** * *
63477347 TTCTGTTTTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAG
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--CACACGCTGAG
63477410 GTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
64 GTATTTTCAATTTCTGT-TTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
*
63477475 GACACGTTGAGGTAATTTCAAT
128 GACACGCTGAGGT-ATTTCAAT
* * * *
63477497 TTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATAAGTTGAGCCACAAG-ACACGTTGAGGT
1 TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGCACACGCTGAGGT
*
63477560 AATTTCAATTTCTGTTTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
66 ATTTTCAATTTCTGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
63477622 ATGCTAAGGTATTTTCAAT
131 ACGCTGAGGTA-TTTCAAT
*
63477641 TTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACATGCT
1 TTCTG-TTTTC----AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGCACACGCT
* * **
63477705 GAAGTATTTTCAATTTCTATTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCC
61 GAGGTATTTTCAATTTC--TGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
* *
63477769 TCAGGACATGCTGAGGTAATTTCAAT
124 TCAAGACACGCTGAGGT-ATTTCAAT
* * * *** * *
63477795 TTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
1 TTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-CACACGCTGAG
* * * **
63477860 GTATTTTCAATTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCGACTCATATTGCGAGAGGT
64 G-----T--A------TTTTCAATTTCTG-TTTTC-AAAAAAATTCAACTCATATTGCGAGAAAT
** * *
63477925 GAGTTGAGCCTTGGC-TCACGCGCTGAGCTATTTTCAAT
114 GAGTTGAGCC-T--CAAGACACGCTGAGGTA-TTTCAAT
** * * *
63477963 TTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAG
1 TTCTGT-TTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-AGCACACGCTGAG
* * * * **
63478028 GTATTTTTTCAATTTATATTTTTCAAAAAAA-TCAACTCACATTGTGAGATGTGAGTTGAGCCTC
64 GTA--TTTTCAATTTCT-GTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
63478092 GGGTCACATG
Statistics
Matches: 631, Mismatches: 68, Indels: 86
0.80 0.09 0.11
Matches are distributed among these distances:
143 1 0.00
144 98 0.16
145 5 0.01
146 35 0.06
147 8 0.01
148 24 0.04
150 194 0.31
151 5 0.01
152 15 0.02
153 4 0.01
154 56 0.09
155 32 0.05
156 7 0.01
157 17 0.03
159 1 0.00
161 1 0.00
163 2 0.00
164 4 0.01
165 18 0.03
166 30 0.05
167 2 0.00
168 68 0.11
169 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (148 bp):
TTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGCACACGCTGAGGT
ATTTTCAATTTCTGTTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
ACGCTGAGGTATTTCAAT
Found at i:63477610 original size:222 final size:221
Alignment explanation
Indices: 63477201--63477882 Score: 944
Period size: 222 Copynumber: 3.1 Consensus size: 221
63477191 ATGTTGTTAC
* **
63477201 TTCTG-TTTTCAAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCGGGACACGCTGAGG
1 TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
*
63477265 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACAC
66 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
63477330 GTTGAGGT-ATTTCCAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT
131 GTTGAGGTAATTT-CAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63477394 C-GGTTCACATGCTGAGGTATTTTCAAT
195 CAGG-TCACATGCTGAGGTATTTTCAAT
* *
63477421 TTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 TTCTGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAG
* *
63477486 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATAAGTTGAGCCACAAGACA
65 GTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
* **
63477551 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
130 CGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* *
63477616 CAAG--ACATGCTAAGGTATTTTCAAT
195 CAGGTCACATGCTGAGGTATTTTCAAT
*
63477641 TTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
1 TTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTG
* * * * **
63477706 AAGTATTTTCAATTTCTATTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
63 AGGTAATTTCAATTTC--TGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
* * * * * * *
63477771 AGGACATGCTGAGGTAATTTCAATTTCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAG
124 AAGACACGTTGAGGTAATTTCAATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAG
* *
63477836 TTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
187 TTGAGCCTCAGGTCACATGCTGAGGTATTTTCAAT
63477871 TTC-GTTTTTCAA
1 TTCTGTTTTTCAA
63477883 TTTCTGCCTT
Statistics
Matches: 408, Mismatches: 39, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
220 35 0.09
221 11 0.03
222 217 0.53
223 12 0.03
224 6 0.01
226 64 0.16
228 35 0.09
229 7 0.02
230 21 0.05
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (221 bp):
TTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
GTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGTCACATGCTGAGGTATTTTCAAT
Found at i:63477957 original size:92 final size:93
Alignment explanation
Indices: 63477805--63477975 Score: 247
Period size: 92 Copynumber: 1.8 Consensus size: 93
63477795 TTCTATTGTC
* *
63477805 AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
63477870 TTTC-GTTTTTCAATTTCTGCCTTTCAA
66 TTTCTGTCTTTCAATTTCTGCCTTTCAA
* * * * *
63477897 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
63477961 ATTTCTGTCTTTCAA
65 ATTTCTGTCTTTCAA
63477976 AAAATCAACT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
91 2 0.03
92 59 0.86
93 8 0.12
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCTGTCTTTCAATTTCTGCCTTTCAA
Found at i:63478007 original size:168 final size:166
Alignment explanation
Indices: 63477731--63478034 Score: 432
Period size: 168 Copynumber: 1.8 Consensus size: 166
63477721 CTATTTTTTC
* *
63477731 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
* * *
63477796 TCTATTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGG
66 TCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
63477861 TATTTTCAATTTCGTTTTTCAATTTCTGCCTTTCAA
131 TATTTTCAATTTCGTTTTTCAATTTCTGCCTTTCAA
* * * *
63477897 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCTAATTTCA
* * * * *
63477961 ATTTCTGTCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACT
63 ATTTCTAT-TGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACC
63478025 GAGGTATTTT
127 GAGGTATTTT
63478035 TTCAATTTAT
Statistics
Matches: 120, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
165 2 0.02
166 38 0.32
168 77 0.64
169 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (166 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAATTTCAATT
TCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGATCACACACCGAGG
TATTTTCAATTTCGTTTTTCAATTTCTGCCTTTCAA
Found at i:63478085 original size:79 final size:76
Alignment explanation
Indices: 63477897--63478088 Score: 233
Period size: 76 Copynumber: 2.5 Consensus size: 76
63477887 TGCCTTTCAA
* * * * *
63477897 AAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTAGATCACACACTGAGCTATTTTCAA
* *
63477962 TTTCTGTCTTTC
65 TTTATATCTTTC
*
63477974 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-AGATCACACACTGAGCTA--TTTTC
*
63478038 AATTTATATTTTTC
63 AATTTATATCTTTC
* * *
63478052 AAAAAAATCAACTCACATTGTGAGATGTGAGTTGAGC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
63478089 CTCGGGTCAC
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
75 3 0.03
76 47 0.47
78 16 0.16
79 33 0.33
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTAGATCACACACTGAGCTATTTTCAAT
TTATATCTTTC
Found at i:63478271 original size:30 final size:30
Alignment explanation
Indices: 63478237--63478295 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
63478227 TAACTCATAT
63478237 TGCGAAAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAAAGGTGAGTTGAGTC-TTTTAATTTC
* *
63478267 TGCGAGAGTTGAGTTGAGTCTTTTAATTT
1 TGCGAAAGGTGAGTTGAGTCTTTTAATTT
63478296 ATGCTTTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.42
Consensus pattern (30 bp):
TGCGAAAGGTGAGTTGAGTCTTTTAATTTC
Found at i:63478503 original size:251 final size:250
Alignment explanation
Indices: 63477899--63478507 Score: 618
Period size: 251 Copynumber: 2.5 Consensus size: 250
63477889 CCTTTCAAAA
* * * * *
63477899 AAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTTTCAATT
* * * * * * *
63477964 TCTG-TCTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC-AC-A
66 TATGTTGTTTTAAAAAAGTCAACTCATATTGCGAAAGATGAGTTGAGCTTTTTA-ATTTCTGCGA
* * * * ** * * *
63478021 CA-CTGAGGT-A-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGTGAGATGTGAG
130 GAGTTGAGTTGAGTCTTTT-AATTTATGCTTTGC--AAAAATCAACTCACATTATGAGAGGTGAG
** * * *
63478083 TTGAGCCTCGGGTCACATGTCAAGGTATTTTCAGAATCTGTTTTTCAAATTCTGTTTTC
192 TTGAGCCTCGGGTCACATACCAAGGTATTTTCAAAATATGTTTTACAAATTCTGTTTTC
* * * *
63478142 CAAAATCAACTCATCTTGCAAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGTTATTTTCAATT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTTTCAATT
* * * * *
63478207 TCTGTTTTTTTCAAAAAATTTAACTCATATTGCGAAAGGTGAGTTGAGCTTTTTAATTTCTGCGA
66 TATGTTGTTTT-AAAAAAGTCAACTCATATTGCGAAAGATGAGTTGAGCTTTTTAATTTCTGCGA
*
63478272 GAGTTGAGTTGAGTCTTTTAATTTATGCTTTGCAAAAATCAACTCATATTATGAGAGGTGAGTTG
130 GAGTTGAGTTGAGTCTTTTAATTTATGCTTTGCAAAAATCAACTCACATTATGAGAGGTGAGTTG
* * *
63478337 AGCCTCGGGTTACATACCGAGGTATTTTCAAAATATGTTTTACAAATTTTGTTTT-
195 AGCCTCGGGTCACATACCAAGGTATTTTCAAAATATGTTTTACAAATTCTGTTTTC
* * **
63478392 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTAGCTTACGTGCTGAGCTA-TTTCTGTT
1 AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTTTC-AAT
* *
63478456 TTAATGTCTAGTTTT-AAAGAGTCAATTCATATTGCGAGAA-ATGAGTTGAGCT
65 TT-ATGT-T-GTTTTAAAAAAGTCAACTCATATTGCGA-AAGATGAGTTGAGCT
63478508 CAGGATCACA
Statistics
Matches: 303, Mismatches: 46, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
243 62 0.20
244 4 0.01
245 6 0.02
246 28 0.09
247 1 0.00
248 3 0.01
249 6 0.02
250 54 0.18
251 110 0.36
252 8 0.03
253 16 0.05
254 5 0.02
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.36
Consensus pattern (250 bp):
AAAAATCAACTCATATTGCAAGAAGTGAGTTGAGCCTTAGCTCACGTGCTGAGCTATTTTCAATT
TATGTTGTTTTAAAAAAGTCAACTCATATTGCGAAAGATGAGTTGAGCTTTTTAATTTCTGCGAG
AGTTGAGTTGAGTCTTTTAATTTATGCTTTGCAAAAATCAACTCACATTATGAGAGGTGAGTTGA
GCCTCGGGTCACATACCAAGGTATTTTCAAAATATGTTTTACAAATTCTGTTTTC
Found at i:63479193 original size:18 final size:18
Alignment explanation
Indices: 63479170--63479223 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
63479160 CCACCACCAA
63479170 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
63479188 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
63479200 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
63479218 CTCCAC
1 CTCCAC
63479224 CATCACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:63479203 original size:30 final size:30
Alignment explanation
Indices: 63479160--63479225 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
63479150 CTAGCCTTTG
63479160 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
63479190 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
63479220 CCACCA
1 CCACCA
63479226 TCACTTGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.26, C:0.50, G:0.06, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:63479712 original size:24 final size:23
Alignment explanation
Indices: 63479664--63479715 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
63479654 CTTTTTTTGT
*
63479664 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
63479687 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
63479711 TATTA
1 TATTA
63479716 GGCATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:63479748 original size:2 final size:2
Alignment explanation
Indices: 63479741--63479818 Score: 69
Period size: 2 Copynumber: 41.5 Consensus size: 2
63479731 CTATATTACG
*
63479741 TA TA TA TA TA T- TA TA TA TA TA TA TA T- TA TA T- TA T- TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
63479779 TG TA TA TA TC TT TA -A TA CTA TA T- TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA T
63479819 TTTGCATGTT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
1 6 0.10
2 55 0.87
3 2 0.03
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (2 bp):
TA
Found at i:63479752 original size:15 final size:15
Alignment explanation
Indices: 63479732--63479768 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
63479722 TTCTAAATTC
*
63479732 TATATTACGTATATA
1 TATATTACATATATA
*
63479747 TATATTATATATATA
1 TATATTACATATATA
63479762 TATATTA
1 TATATTA
63479769 TATTATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TATATTACATATATA
Found at i:63479853 original size:52 final size:53
Alignment explanation
Indices: 63479741--63479856 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 53
63479731 CTATATTACG
*
63479741 TATATA-TATATTATATATATATATATTATATTATTTTATGTATATATCTTTAA
1 TATATATTATATTATATATATATATATTATATTATCTTATGTATATA-CTTTAA
* *
63479794 TACTATATTATA-TATATATATATATTTTGCATGTTATCTTATGTATATA-TTTAA
1 TA-TATATTATATTATATATATATATATT--ATATTATCTTATGTATATACTTTAA
63479848 T-TATATTAT
1 TATATATTAT
63479857 GTATGTATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 9
0.82 0.04 0.13
Matches are distributed among these distances:
52 8 0.14
53 2 0.04
54 25 0.45
55 4 0.07
56 17 0.30
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.56
Consensus pattern (53 bp):
TATATATTATATTATATATATATATATTATATTATCTTATGTATATACTTTAA
Found at i:63479856 original size:21 final size:21
Alignment explanation
Indices: 63479827--63479866 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
63479817 ATTTTGCATG
*
63479827 TTATCTTATGTATATATTTAA
1 TTATATTATGTATATATTTAA
*
63479848 TTATATTATGTATGTATTT
1 TTATATTATGTATATATTT
63479867 TTTACACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (21 bp):
TTATATTATGTATATATTTAA
Found at i:63479861 original size:25 final size:25
Alignment explanation
Indices: 63479747--63479896 Score: 73
Period size: 25 Copynumber: 6.0 Consensus size: 25
63479737 TACGTATATA
*
63479747 TATATTATATATATATATA-TTATAT
1 TATATTATGTATATATATATTTA-AT
* *
63479772 TATTTTATG--TATATATCTTTAAT
1 TATATTATGTATATATATATTTAAT
*
63479795 ACTATATTATATATATATATATATT--T
1 --TATATTATGTATATATATAT-TTAAT
* * *
63479821 TGCATGTTATCTTATGTATATATTTAAT
1 T--ATATTAT-GTATATATATATTTAAT
* * *
63479849 TATATTATGTATGTAT-TTTTTACAC
1 TATATTATGTATATATATATTTA-AT
*
63479874 TATATTATGTACATAT-T-TTTAAT
1 TATATTATGTATATATATATTTAAT
63479897 ATTATCACGT
Statistics
Matches: 97, Mismatches: 16, Indels: 26
0.70 0.12 0.19
Matches are distributed among these distances:
23 10 0.10
24 13 0.13
25 37 0.38
26 15 0.15
27 18 0.19
28 4 0.04
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (25 bp):
TATATTATGTATATATATATTTAAT
Found at i:63480071 original size:16 final size:15
Alignment explanation
Indices: 63480047--63480081 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
63480037 TAATTATTAT
63480047 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
63480063 TATTTTAATATTTTA
1 TATTCTAATATTTTA
63480078 TATT
1 TATT
63480082 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:63481572 original size:15 final size:15
Alignment explanation
Indices: 63481515--63481577 Score: 56
Period size: 15 Copynumber: 3.9 Consensus size: 15
63481505 ATTCAGCAGT
*
63481515 AAGGAGAAGAAAATAA
1 AAGGAGAAGAAAA-AG
*
63481531 AAGGA-AAGAAAGGAG
1 AAGGAGAAGAAA-AAG
63481546 AAGAGAAGGAAGAAAAAG
1 AAG-G-A-GAAGAAAAAG
63481564 AAGGAGAAGAAAAA
1 AAGGAGAAGAAAAA
63481578 AAGAAGGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
15 19 0.49
16 7 0.18
17 2 0.05
18 5 0.13
19 6 0.15
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (15 bp):
AAGGAGAAGAAAAAG
Found at i:63484904 original size:40 final size:40
Alignment explanation
Indices: 63484849--63485018 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
63484839 AACATTGGAA
63484849 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63484889 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63484929 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63484968 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63485009 CTATATCCGG
1 ATATATCCGG
63485019 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63492998 original size:40 final size:40
Alignment explanation
Indices: 63492943--63493152 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
63492933 AACATTGGAA
63492943 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63492983 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63493023 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63493063 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63493102 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63493143 CTATATCCGG
1 ATATATCCGG
63493153 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63499352 original size:22 final size:21
Alignment explanation
Indices: 63499324--63499365 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
63499314 TAGTACATAA
63499324 TGTTTTAAATATATTATTTAAG
1 TGTTTTAAATAT-TTATTTAAG
*
63499346 TGTTTTAAATATTTTTTTAA
1 TGTTTTAAATATTTATTTAA
63499366 TAAATAATCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (21 bp):
TGTTTTAAATATTTATTTAAG
Found at i:63499416 original size:15 final size:15
Alignment explanation
Indices: 63499396--63499451 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
63499386 ACTTTATTCA
*
63499396 TATTTTTTCGTATAT
1 TATTTTTTCATATAT
* *
63499411 TATTTTTTAAAATA-
1 TATTTTTTCATATAT
* *
63499425 TATTTTTTCCTATTT
1 TATTTTTTCATATAT
63499440 TATTTTTT-ATAT
1 TATTTTTTCATAT
63499452 TATTTTAGCA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
14 13 0.41
15 19 0.59
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (15 bp):
TATTTTTTCATATAT
Found at i:63499687 original size:145 final size:145
Alignment explanation
Indices: 63499138--63500043 Score: 907
Period size: 146 Copynumber: 6.1 Consensus size: 145
63499128 ATAAGTAAAA
* * * * * *
63499138 TATTTTCGTATATTATTT-TTTATATTATTTTAGCA-AAAATGTTTTAAATGTATTATGTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAAGTA
** * *
63499201 TTTTTTTATAATAATTTAATAAATAACACTGATTTTGACACTTT-TTCGTATTTTTTTCGTATCT
66 -TTTTTTAT-ATTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATAT
63499265 T-TTTTTT-AAATATAT
129 TATTTTTTAAAATATAT
* * * * * * *
63499280 TACTTTCGTATTATTTAATT-TTAAAACCTTATTTTAGTACATAATGTTTTAAATATATTATTTA
1 TATTTTCGTA-T-TTTATTTCTTTATA--TTATTTTAGTACATAATGATTCAAATGTATTATTTA
* ** * *
63499344 AGTGTTTTAAATATTTTTTTAATAAATAATCCTGATTTT-AGCACTTTATTCATA-TTTTTTCGT
62 AGTATTTTTTATA-TTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGT
63499407 ATATTATTTTTTAAAATATAT
125 ATATTATTTTTTAAAATATAT
* * * * *
63499428 T-TTTTCCTATTTTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTAT-T-TA--
** *
63499491 ATGTAAGTGTTTTTTTATACTAATTTAATAAATAA-CCTGATTTTGACACTTTTTTCGTATTTTT
62 A-GT-A----TTTTTTATA-TTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTT
*
63499555 TT-GTATCTTATTTTTTAAAATATAT
120 TTCGTATATTATTTTTTAAAATATAT
* *
63499580 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTCAA-T
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTT-AAGT
*
63499644 ATTTTTTATATTTTTTCAATAAATATCCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATA
65 ATTTTTTATATTTTTT-AATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGTATA
63499708 TTATTTTTTAAAATATAT
128 TTATTTTTTAAAATATAT
* * * * ** * *
63499726 TTTTTTCTTATTTTATTT-TTTATATTATTTTAGCA-AAAAAAAATCAAATGTATTAATTAACGT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAA-GT
* *
63499789 -TTCTTTCTATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTT-TTCGTAATTTTTTT
65 ATT-TTT-TA-T-A---TTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGT-A----TTT
*
63499852 ATTTTCGTATATTATTTTTTAATATATAT
118 -TTTTCGTATATTATTTTTTAAAATATAT
*
63499881 TATTTTCGT-TTTTATTTCTTTATATTATTTTAGTACATAATGCTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAAGTA
63499945 TTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACTTTATTCGTATTTTTTTCGTATAT
66 TTTTTTATA-TTTTTTAATAAATAACCCTGATTTTGA-CACTTTATTCGTATTTTTTTCGTATAT
63500009 TATTTTTTAAAATATAT
129 TATTTTTTAAAATATAT
*
63500026 TATTTTGGTATTTTATTT
1 TATTTTCGTATTTTATTT
63500044 TAGCATAAAA
Statistics
Matches: 638, Mismatches: 75, Indels: 98
0.79 0.09 0.12
Matches are distributed among these distances:
142 9 0.01
143 35 0.05
144 47 0.07
145 96 0.15
146 108 0.17
147 43 0.07
148 13 0.02
149 7 0.01
150 53 0.08
151 13 0.02
152 45 0.07
153 45 0.07
154 48 0.08
155 55 0.09
156 21 0.03
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (145 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGATTCAAATGTATTATTTAAGTA
TTTTTTATATTTTTTAATAAATAACCCTGATTTTGACACTTTATTCGTATTTTTTTCGTATATTA
TTTTTTAAAATATAT
Found at i:63499740 original size:299 final size:293
Alignment explanation
Indices: 63499140--63500044 Score: 1153
Period size: 300 Copynumber: 3.1 Consensus size: 293
63499130 AAGTAAAATA
* *
63499140 TTTTCGTATATTATTTTTTATATTATTTTAGC-AAAAATGTTTTAAATGTATTATG-TA-AGTA-
1 TTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGATATAGTAT
63499201 TTTTTTTATAATAATTTAATAAATAACACTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTT
66 TTTTTTTATAATAATTTAATAAATAAC-CTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTT
* * *
63499266 -TTTTTT-AAATATATTACTTTCGTATTATTTAATT-TTAAAACCTTATTTTAGTACATAATGTT
130 ATTTTTTAAAATATATTATTTTCGTA-T-TTTATTTCTTAATA--TTATTTTAGTACATAATGTT
* * * **
63499328 TTAAATATATTATTTAAGTGTTTTAAATATTTTTTTAATAAATAAT-CCTGATTTTAGCACTTTA
191 TCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAAT-ATCCCTGATTTTAGCACTTTA
*
63499392 TTCATA-TTTTTTCGTATATTATTTTTTAAAATATA-TT
255 TTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTT
*
63499429 TTTTCCTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTATATTATG
1 TTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATG-ATA-TA-G
*
63499494 TAAGTGTTTTTTTATACTAATTTAATAAATAACCTGATTTTGACACTTTTTTCGTATTTTTTT-G
63 T-A-T-TTTTTTTATAATAATTTAATAAATAACCTGATTTTGACAC-TTTTTCGTATTTTTTTCG
*
63499558 TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATG
124 TATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATAATG
*
63499623 TTTCAAATGTATTATTTCAA-TATTTTTTATATTTTTTCAATAAATATCCCTGATTTTAGCACTT
189 TTTCAAATGTATTATTT-AAGTATTTTTTATATTTTTTTAATAAATATCCCTGATTTTAGCACTT
63499687 TATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTT
253 TATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTT
* ***
63499728 TTTTCTTATTTTATTTTTTATATTATTTTAGCAAAAAA-AAATCAAATGTATTA--AT-TAACGT
1 TTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGATAT-A-GT
* * ** * *
63499789 -TTCTTTCTATTAAGGGTTTTTTACTAAATAACCCTGATTTTGATACTTTTTCGTAATTTTTTTA
64 ATTTTTTTTA-TAA---TAATTTAATAAATAA-CCTGATTTTGACACTTTTTCGT-A----TTT-
* * *
63499853 TTTTCGTATATTATTTTTTAATATATATTATTTTCGT-TTTTATTTCTTTATATTATTTTAGTAC
118 TTTTCGTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTAC
* *
63499917 ATAATGCTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATAACCCTGATTTTAG
183 ATAATGTTTCAAATGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATATCCCTGATTTTAG
*
63499982 CACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTA
248 CACTTTATTCGTATTTTTTTCGTATATTATTTTTTAAAATATATTT
*
63500028 TTTTGGTATTTTATTTT
1 TTTTCGTATTTTATTTT
63500045 AGCATAAAAT
Statistics
Matches: 548, Mismatches: 36, Indels: 53
0.86 0.06 0.08
Matches are distributed among these distances:
289 30 0.05
290 28 0.05
291 3 0.01
292 2 0.00
293 1 0.00
294 24 0.04
295 18 0.03
296 3 0.01
297 77 0.14
298 69 0.13
299 97 0.18
300 166 0.30
301 30 0.05
ACGTcount: A:0.30, C:0.08, G:0.06, T:0.56
Consensus pattern (293 bp):
TTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGATATAGTAT
TTTTTTTATAATAATTTAATAAATAACCTGATTTTGACACTTTTTCGTATTTTTTTCGTATCTTA
TTTTTTAAAATATATTATTTTCGTATTTTATTTCTTAATATTATTTTAGTACATAATGTTTCAAA
TGTATTATTTAAGTATTTTTTATATTTTTTTAATAAATATCCCTGATTTTAGCACTTTATTCGTA
TTTTTTTCGTATATTATTTTTTAAAATATATTT
Found at i:63499745 original size:17 final size:17
Alignment explanation
Indices: 63499723--63499757 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
63499713 TTTTAAAATA
*
63499723 TATTTTTT-TCTTATTT
1 TATTTTTTATATTATTT
63499739 TATTTTTTATATTATTT
1 TATTTTTTATATTATTT
63499756 TA
1 TA
63499758 GCAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (17 bp):
TATTTTTTATATTATTT
Found at i:63499858 original size:17 final size:19
Alignment explanation
Indices: 63499836--63499870 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
63499826 TTTTGATACT
63499836 TTTTCGTA-ATT-TTTTTA
1 TTTTCGTATATTATTTTTA
63499853 TTTTCGTATATTATTTTT
1 TTTTCGTATATTATTTTT
63499871 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 3 0.19
19 5 0.31
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTTCGTATATTATTTTTA
Found at i:63499884 original size:30 final size:28
Alignment explanation
Indices: 63499850--63499909 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 28
63499840 CGTAATTTTT
63499850 TTATTTTCGTATATTATTT-TTTAATATATA
1 TTATTTTCGT-TATTATTTCTTT-ATAT-TA
*
63499880 TTATTTTCGTTTTTATTTCTTTATATTA
1 TTATTTTCGTTATTATTTCTTTATATTA
63499908 TT
1 TT
63499910 TTAGTACATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 4 0.14
29 11 0.39
30 13 0.46
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.68
Consensus pattern (28 bp):
TTATTTTCGTTATTATTTCTTTATATTA
Found at i:63500168 original size:30 final size:31
Alignment explanation
Indices: 63500132--63500190 Score: 102
Period size: 30 Copynumber: 1.9 Consensus size: 31
63500122 CGTATTTTTT
63500132 TATTTTCAAATTTTATTTTTTTA-ATTATAC
1 TATTTTCAAATTTTATTTTTTTATATTATAC
*
63500162 TATTTTCATATTTTATTTTTTTATATTAT
1 TATTTTCAAATTTTATTTTTTTATATTAT
63500191 TTTAACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (31 bp):
TATTTTCAAATTTTATTTTTTTATATTATAC
Found at i:63500648 original size:14 final size:14
Alignment explanation
Indices: 63500629--63500683 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
63500619 AAAAAATTAC
63500629 CTTTTTCTTTCCTT
1 CTTTTTCTTTCCTT
* *
63500643 CTTTTTCCTTCCCT
1 CTTTTTCTTTCCTT
*
63500657 CTTCTTCTTCTCCTTCT
1 CTTTTTCTT-TCC-T-T
63500674 CTTTTTCTTT
1 CTTTTTCTTT
63500684 TACTTTTTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
14 19 0.59
15 3 0.09
16 1 0.03
17 9 0.28
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
CTTTTTCTTTCCTT
Found at i:63500756 original size:8 final size:8
Alignment explanation
Indices: 63500744--63500782 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
63500734 TTTCTTTCTT
*
63500744 CTTCTTCT
1 CTTCTTCC
63500752 CTTCTTCC
1 CTTCTTCC
63500760 CTTCTTCC
1 CTTCTTCC
*
63500768 CTGCTTCC
1 CTTCTTCC
63500776 CTTCTTC
1 CTTCTTC
63500783 TCTCTTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (8 bp):
CTTCTTCC
Found at i:63500926 original size:27 final size:27
Alignment explanation
Indices: 63500895--63500959 Score: 130
Period size: 27 Copynumber: 2.4 Consensus size: 27
63500885 CAGACACCGA
63500895 TGCCGCCTCTGCCAGAGGCAACACTGG
1 TGCCGCCTCTGCCAGAGGCAACACTGG
63500922 TGCCGCCTCTGCCAGAGGCAACACTGG
1 TGCCGCCTCTGCCAGAGGCAACACTGG
63500949 TGCCGCCTCTG
1 TGCCGCCTCTG
63500960 GCACCAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.15, C:0.38, G:0.29, T:0.17
Consensus pattern (27 bp):
TGCCGCCTCTGCCAGAGGCAACACTGG
Found at i:63501010 original size:10 final size:10
Alignment explanation
Indices: 63500997--63501022 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
63500987 TTCGTTTTTT
63500997 TACTGTTTGG
1 TACTGTTTGG
63501007 TACTGTTTGG
1 TACTGTTTGG
63501017 TACTGT
1 TACTGT
63501023 GCGTCAAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.27, T:0.50
Consensus pattern (10 bp):
TACTGTTTGG
Found at i:63503649 original size:3 final size:3
Alignment explanation
Indices: 63503641--63503682 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
63503631 TTTATCATAA
*
63503641 ATG ATG ATG ATT ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
63503683 GGGACTGTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.31, T:0.36
Consensus pattern (3 bp):
ATG
Found at i:63504989 original size:22 final size:22
Alignment explanation
Indices: 63504964--63505009 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
63504954 GATTTAGGTA
63504964 TTATCATTGTTGAACTTTATTT
1 TTATCATTGTTGAACTTTATTT
*
63504986 TTATCATTTTTGAACTTTATTT
1 TTATCATTGTTGAACTTTATTT
63505008 TT
1 TT
63505010 GTATCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.63
Consensus pattern (22 bp):
TTATCATTGTTGAACTTTATTT
Found at i:63512319 original size:39 final size:39
Alignment explanation
Indices: 63512201--63512383 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63512191 TCGTTCAAAC
* * ** * **
63512201 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
63512241 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
63512281 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63512320 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63512359 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63512384 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:63520978 original size:39 final size:39
Alignment explanation
Indices: 63520860--63521042 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63520850 TCGTTCAAAC
* * ** * **
63520860 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
63520900 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
63520940 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63520979 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63521018 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63521043 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:63522340 original size:22 final size:22
Alignment explanation
Indices: 63522315--63522360 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
63522305 GATTTAGGTA
63522315 TTATCATTGTTGAACTTTATTT
1 TTATCATTGTTGAACTTTATTT
*
63522337 TTATCATTTTTGAACTTTATTT
1 TTATCATTGTTGAACTTTATTT
63522359 TT
1 TT
63522361 GTATCAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.09, G:0.07, T:0.63
Consensus pattern (22 bp):
TTATCATTGTTGAACTTTATTT
Found at i:63529666 original size:39 final size:39
Alignment explanation
Indices: 63529548--63529730 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63529538 TCGTTCAAAC
* * ** * **
63529548 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
63529588 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
63529628 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63529667 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63529706 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63529731 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:63537101 original size:39 final size:39
Alignment explanation
Indices: 63536983--63537165 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
63536973 TCGTTCAAAC
* * ** * **
63536983 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
63537023 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
63537063 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63537102 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
63537141 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
63537166 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:63551989 original size:29 final size:29
Alignment explanation
Indices: 63551956--63552038 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
63551946 GTGACGAGAT
63551956 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
63551985 TGGCACTAAGTGTGTATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63552014 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
63552039 AAAAATACGG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63560089 original size:28 final size:29
Alignment explanation
Indices: 63560042--63560123 Score: 148
Period size: 28 Copynumber: 2.9 Consensus size: 29
63560032 GTGACGAGAT
63560042 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
63560071 TGGCACTAA-TGTGTATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
63560099 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
63560124 AAAAATACGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:63563042 original size:50 final size:47
Alignment explanation
Indices: 63562924--63563052 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
63562914 GGTGTAATGC
63562924 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAACAAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAACAAGT
* * * **
63562971 TGATGCCATGTCCTAGACATGGTCTTACACTGGC-CCTCACATCTCTGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAAC-AAGT
*
63563019 GTCGATGCCATGTCCCAGACATGGTCATACACTG
1 -T-GATGCCATGTCCCAGACATGGTCTTACACTG
63563053 ACATATCTTG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 3 0.04
47 36 0.51
48 2 0.03
49 1 0.01
50 29 0.41
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCAACAAGT
Found at i:63580742 original size:20 final size:20
Alignment explanation
Indices: 63580717--63580754 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
63580707 TAACATAATA
63580717 AATTTTAATTAATTTTGATT
1 AATTTTAATTAATTTTGATT
* *
63580737 AATTTTTATTATTTTTGA
1 AATTTTAATTAATTTTGA
63580755 CAGATTTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (20 bp):
AATTTTAATTAATTTTGATT
Found at i:63588760 original size:27 final size:28
Alignment explanation
Indices: 63588700--63588769 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
63588690 AAACTTGTAC
*
63588700 AGCACTAAGTGTGCGAGTTTGATCATGT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
* *
63588728 ACCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
63588755 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63588770 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:63594466 original size:31 final size:31
Alignment explanation
Indices: 63594423--63594506 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
63594413 TTAGTCTTGA
63594423 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
63594453 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
63594484 CATTTCACTGGGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
63594507 ATTGTAAATG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:63594577 original size:42 final size:42
Alignment explanation
Indices: 63594530--63594621 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
63594520 TGGCCCATAG
* *** *
63594530 GCCCATTTCAATATCACATGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
63594572 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
63594614 GCCCATTT
1 GCCCATTT
63594622 GGGGAGACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:63594844 original size:26 final size:26
Alignment explanation
Indices: 63594767--63594937 Score: 246
Period size: 26 Copynumber: 6.8 Consensus size: 26
63594757 CTCTTTTAAT
63594767 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCGATA
* * *
63594792 AACTGGGGCA-AAACTCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
63594817 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
63594843 AACTGGGGCATAAGCCCTTTTC----
1 AACTGGGGCATAAGCCCTTTTCGATA
*
63594865 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGATA
*
63594891 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGATA
63594917 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
63594938 GCACTTCCTC
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
22 22 0.17
25 32 0.24
26 78 0.59
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGATA
Found at i:63594886 original size:74 final size:74
Alignment explanation
Indices: 63594759--63594937 Score: 240
Period size: 74 Copynumber: 2.4 Consensus size: 74
63594749 GGCCTAGACT
*
63594759 CTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGATAAACTGGGGCAAAACTCTTTTCAATAAACT
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTTC---AAACTGGGGCAAAACCCTTTTCAATAAACT
63594821 GGGGCATAAGCC
63 GGGGCATAAGCC
** * **
63594833 CTTTTCGGTAAACTGGGGCATAAGCCCTTTTC-AACTGGGGCATAAGCCCTTTTCGGTAAACTGG
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTTCAAACTGGGGCA-AAACCCTTTTCAATAAACTGG
63594897 GGCATAAGCC
65 GGCATAAGCC
63594907 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
63594938 GCACTTCCTC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
73 10 0.11
74 61 0.66
75 1 0.01
76 10 0.11
77 11 0.12
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (74 bp):
CTTTTCAATAAACTGGGGCATAAGCCCTTTTCAAACTGGGGCAAAACCCTTTTCAATAAACTGGG
GCATAAGCC
Found at i:63594888 original size:48 final size:49
Alignment explanation
Indices: 63594767--63594937 Score: 240
Period size: 48 Copynumber: 3.4 Consensus size: 49
63594757 CTCTTTTAAT
* * *
63594767 AACTGGGGCA-AAGCCCTTTTCGATAAACTGGGGCA-AAACTCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC---A
63594817 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC-
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCA
63594865 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTC---A
63594917 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
63594938 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 3, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
48 48 0.43
50 10 0.09
51 24 0.21
52 30 0.27
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (49 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCA
Found at i:63595012 original size:20 final size:20
Alignment explanation
Indices: 63594987--63595073 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
63594977 TTATGAATAC
63594987 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
63595007 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
63595027 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
63595047 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
63595067 ATCATGT
1 ATCATGT
63595074 ATATCGTATC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:63595904 original size:27 final size:27
Alignment explanation
Indices: 63595874--63596341 Score: 239
Period size: 27 Copynumber: 17.3 Consensus size: 27
63595864 TTTCATCCTA
* * *
63595874 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
**
63595901 CAAGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
63595928 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * *
63595955 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
63595981 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
* * * **
63596008 CTAGGGGTGTTTTGGTAATTCTACCCTAT
1 C-AAGGGTATTTTGGTAATTTTA-CAAAT
* ** *
63596037 -AGGGGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **** **
63596062 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
***** * **
63596089 CAAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ****** * * *
63596116 CGAGGGTAAAACAATAATTCTATAAAG
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
63596143 CAAGGGTACTTTGGTAATTTTTACAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAAT
*
63596171 CGAA-GGTATTTTAGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * *
63596198 CAGGGGGTATTTTAGTAATTTTACAAAC
1 CA-AGGGTATTTTGGTAATTTTACAAAT
* *
63596226 CAGGGGTATTTTAGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ***
63596252 CTAGGGGTATTTTGGTAATTTTATTGAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* ** *
63596280 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
** *
63596307 CAAGGGTATTTCAGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
63596334 CGAGGGTA
1 CAAGGGTA
63596342 AAATGGTAAT
Statistics
Matches: 352, Mismatches: 75, Indels: 28
0.77 0.16 0.06
Matches are distributed among these distances:
25 2 0.01
26 19 0.05
27 282 0.80
28 47 0.13
29 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:63595971 original size:81 final size:80
Alignment explanation
Indices: 63595876--63596460 Score: 256
Period size: 81 Copynumber: 7.2 Consensus size: 80
63595866 TCATCCTACA
* * * *
63595876 AGGGTGTTTTGGTAAATCTACAAATCAAGGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTG
1 AGGGTATTTCGGTAATTCTACAAA-CAAGGGTATTTCTGTAATTTTATAAATCAAGGGTATTTTG
63595941 GTAATTTTACAAATTG
65 GTAATTTTACAAATTG
* * * *
63595957 AGGGTATTTCGGTAATT-TCACAAACCAGTGGTATTT-TGGTAATTTTACAAA-CTAGGGGTGTT
1 AGGGTATTTCGGTAATTCT-ACAAACAAG-GGTATTTCT-GTAATTTTATAAATC-AAGGGTATT
* ** *
63596019 TTGGTAATTCTACCCTATAG
62 TTGGTAATTTTA-CAAATTG
* * * *** * * *****
63596039 -GGGTATTTCAGTAATT-TCACAATCGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACA
1 AGGGTATTTCGGTAATTCT-ACAAACAAGGGTATTTCTGTAATTTTATAAATCAAGGGTATTTTG
* ** *
63596102 GTAATTCTGTAAATCG
65 GTAATTTTACAAATTG
*** ** * *
63596118 AGGGTAAAACAATAATTCTATAAAGCAAGGGTACTTT-GGTAATTTT-TACAAGTCGAA-GGTAT
1 AGGGTATTTCGGTAATTCTACAAA-CAAGGGTA-TTTCTGTAATTTTATA-AA-TC-AAGGGTAT
* *
63596180 TTTAGTAATTTTACAAATCAG
61 TTTGGTAATTTTACAAAT-TG
* ** * * * *
63596201 GGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT-TAGTAATTTTACAAA-CTAGGGGTATTT
1 AGGGTATTTCGGTAATTCTACAAA-CAAGGGTATTTCT-GTAATTTTATAAATC-AAGGGTATTT
*** *
63596264 TGGTAATTTTATTGATCG
63 TGGTAATTTTACAAATTG
* * ** * * ***
63596282 AGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTATAAATCGAGGGTAAAATG
1 AGGGTATTTCGGTAATTCTACAAA-CAAGGGTATTTCTGTAATTTTATAAATCAAGGGTATTTTG
**
63596347 GTAATTTTGTAAATTG
65 GTAATTTTACAAATTG
*** * ** * * *
63596363 AGGGTAAGACGGTAATTCTGTCTTAC-AGGAGTATTTCAGTAATTTTACAAAATCGAGGGTATTT
1 AGGGTATTTCGGTAATTCT-ACAAACAAGG-GTATTTCTGTAATTTTA-TAAATCAAGGGTATTT
* * *
63596427 TAGTAATTTTGCAAACTG
63 TGGTAATTTTACAAATTG
*
63596445 AGGGTATTTCGATAAT
1 AGGGTATTTCGGTAAT
63596461 CGAGGATATT
Statistics
Matches: 375, Mismatches: 106, Indels: 45
0.71 0.20 0.09
Matches are distributed among these distances:
79 3 0.01
80 54 0.14
81 196 0.52
82 85 0.23
83 36 0.10
84 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.37
Consensus pattern (80 bp):
AGGGTATTTCGGTAATTCTACAAACAAGGGTATTTCTGTAATTTTATAAATCAAGGGTATTTTGG
TAATTTTACAAATTG
Found at i:63596378 original size:54 final size:54
Alignment explanation
Indices: 63596265--63596379 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
63596255 GGGGTATTTT
** *** ***
63596265 GGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGAC
* ***
63596319 AGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATTGAGGGTAAGAC
1 GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGAC
63596373 GGTAATT
1 GGTAATT
63596380 CTGTCTTACA
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.38
Consensus pattern (54 bp):
GGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAACCAAGGGTAAGAC
Found at i:63596426 original size:28 final size:27
Alignment explanation
Indices: 63596393--63596454 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 27
63596383 TCTTACAGGA
63596393 GTATTTCAGTAATTTTACAAAATCGAGG
1 GTATTTCAGTAATTTTACAAAAT-GAGG
* * *
63596421 GTATTTTAGTAATTTTGCAAACTGAGG
1 GTATTTCAGTAATTTTACAAAATGAGG
63596448 GTATTTC
1 GTATTTC
63596455 GATAATCGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAAATGAGG
Found at i:63596460 original size:27 final size:28
Alignment explanation
Indices: 63595897--63596454 Score: 108
Period size: 27 Copynumber: 20.6 Consensus size: 28
63595887 GTAAATCTAC
* * **
63595897 AAATCAAGGGTATTTCTGTAATTTT-GT
1 AAATCGAGGGTATTTCAGTAATTTTACA
* **
63595924 AAATCAAGGGTATTTTGGTAATTTTAC-
1 AAATCGAGGGTATTTCAGTAATTTTACA
* * *
63595951 AAATTGAGGGTATTTCGGTAATTTCAC-
1 AAATCGAGGGTATTTCAGTAATTTTACA
* **
63595978 AAA-CCAGTGGTATTTTGGTAATTTTACA
1 AAATCGAG-GGTATTTCAGTAATTTTACA
* * * ** * *
63596006 AACTAG-GGGTGTTTTGGTAATTCTACC
1 AAATCGAGGGTATTTCAGTAATTTTACA
** *
63596033 CTATAG-GGGTATTTCAGTAA-TTT-CA
1 AAATCGAGGGTATTTCAGTAATTTTACA
* *** * **
63596058 CAATCGAGGGTAAAACGGTAATTTT-GT
1 AAATCGAGGGTATTTCAGTAATTTTACA
* *** * **
63596085 AAATCAAGGGTAAAACAGTAATTCT-GT
1 AAATCGAGGGTATTTCAGTAATTTTACA
*** * * *
63596112 AAATCGAGGGTAAAACAATAATTCTA-T
1 AAATCGAGGGTATTTCAGTAATTTTACA
* * *
63596139 AAAGCAAGGGTACTTT-GGTAATTTTTAC-
1 AAATCGAGGGTA-TTTCAGTAA-TTTTACA
* * *
63596167 AAGTCGAAGGTATTTTAGTAATTTTAC-
1 AAATCGAGGGTATTTCAGTAATTTTACA
* *
63596194 AAATCAGGGGGTATTTTAGTAATTTTAC-
1 AAATC-GAGGGTATTTCAGTAATTTTACA
* *
63596222 AAA-CCAGGGGTATTTTAGTAATTTTACA
1 AAATCGA-GGGTATTTCAGTAATTTTACA
* * ** *
63596250 AACTAG-GGGTATTTTGGTAATTTTA-T
1 AAATCGAGGGTATTTCAGTAATTTTACA
** ** **
63596276 TGATCGAGGGTATTTTGGTAATTTT-GT
1 AAATCGAGGGTATTTCAGTAATTTTACA
* * *
63596303 AAACCAAGGGTATTTCAGTAATTTTA-T
1 AAATCGAGGGTATTTCAGTAATTTTACA
** * **
63596330 AAATCGAGGGTAAAAT-GGTAATTTT-GT
1 AAATCGAGGGT-ATTTCAGTAATTTTACA
* *** *
63596357 AAATTGAGGGTAAGACGGTAATTCTGT-C-
1 AAATCGAGGGTATTTCAGTAATT-T-TACA
**
63596385 TTA-C-AGGAGTATTTCAGTAATTTTACA
1 AAATCGAGG-GTATTTCAGTAATTTTACA
* *
63596412 AAATCGAGGGTATTTTAGTAATTTTGCA
1 AAATCGAGGGTATTTCAGTAATTTTACA
*
63596440 AACT-GAGGGTATTTC
1 AAATCGAGGGTATTTC
63596455 GATAATCGAG
Statistics
Matches: 409, Mismatches: 94, Indels: 56
0.73 0.17 0.10
Matches are distributed among these distances:
25 6 0.01
26 23 0.06
27 307 0.75
28 69 0.17
29 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.37
Consensus pattern (28 bp):
AAATCGAGGGTATTTCAGTAATTTTACA
Found at i:63596521 original size:27 final size:27
Alignment explanation
Indices: 63596458--63596534 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
63596448 GTATTTCGAT
* *
63596458 AATCGAGGATATTTGGGTAATTTTATA
1 AATCGAGGGTATTTGGGTAATTTTACA
* *
63596485 AATTGGGGGTACTTT-GGTAATTTTACA
1 AATCGAGGGTA-TTTGGGTAATTTTACA
* **
63596512 AGTCGAGGGTATTTCAGTAATTT
1 AATCGAGGGTATTTGGGTAATTT
63596535 GGTAAACTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.08
27 34 0.85
28 3 0.08
ACGTcount: A:0.29, C:0.06, G:0.25, T:0.40
Consensus pattern (27 bp):
AATCGAGGGTATTTGGGTAATTTTACA
Found at i:63600553 original size:28 final size:29
Alignment explanation
Indices: 63600484--63600584 Score: 96
Period size: 28 Copynumber: 3.5 Consensus size: 29
63600474 GACAAGATTG
* *
63600484 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-AAATTCTACA
* *
63600514 GCACTAAGTGTGCGAGTTT-GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAATTCTACA
* * * * *
63600542 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTTTAAATTCTACA
*
63600571 GCATTAAGTGTGCG
1 GCACTAAGTGTGCG
63600585 GATTCACTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 23 0.38
29 19 0.32
30 18 0.30
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAATTCTACA
Found at i:63604693 original size:40 final size:40
Alignment explanation
Indices: 63604648--63604814 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63604638 CGGAATATAA
63604648 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63604688 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63604728 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63604768 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63604807 CCGGATAT
1 CCGGATAT
63604815 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63609331 original size:25 final size:24
Alignment explanation
Indices: 63609068--63609420 Score: 87
Period size: 22 Copynumber: 15.0 Consensus size: 24
63609058 GTGATGAATG
63609068 TGAACTTGCATATGTGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* * *
63609093 CGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
*
63609115 TGAACATGCATATATGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* * *
63609140 CGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
*
63609162 TGAACATGCATATATGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* * *
63609187 CGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
* *
63609209 TGAACATGCATATACGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* * *
63609234 CGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
63609256 TGAACTTGCATATGTGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* * *
63609281 CGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
63609303 TGAACTTGCATATGTGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* *
63609328 TGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
*
63609350 TGAACATGCATATATGTGATAAGGC
1 TGAACTTGCATAT-TGTGATAAGGC
* *
63609375 TGAA-TGGCCA-A-TGTGATGAATG-
1 TGAACTTG-CATATTGTGAT-AAGGC
*
63609397 TGAACATGCATATATGTGATAAGG
1 TGAACTTGCATAT-TGTGATAAGG
63609421 TAGAATGGCC
Statistics
Matches: 231, Mismatches: 49, Indels: 97
0.61 0.13 0.26
Matches are distributed among these distances:
22 78 0.34
23 37 0.16
24 38 0.16
25 78 0.34
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (24 bp):
TGAACTTGCATATTGTGATAAGGC
Found at i:63609476 original size:47 final size:47
Alignment explanation
Indices: 63608726--63609441 Score: 1261
Period size: 47 Copynumber: 15.2 Consensus size: 47
63608716 TTTAGGATTT
* *
63608726 AATGAGATGAGTGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
63608773 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63608820 AATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63608867 AATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63608914 AATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63608961 AATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
63609008 AATGTGATGAATGTAAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
63609055 AATGTGATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
63609102 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
63609149 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63609196 AATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
63609243 AATGTGATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
63609290 AATGTGATGAATGTGAACTTGCATATGTGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
63609337 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
**
63609384 AATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
63609431 AATGTGATGAA
1 AATGTGATGAA
63609442 CGTGGAAGTG
Statistics
Matches: 650, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 650 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:63609519 original size:46 final size:46
Alignment explanation
Indices: 63609465--63609637 Score: 283
Period size: 46 Copynumber: 3.8 Consensus size: 46
63609455 ATATGTGGCG
*
63609465 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
63609511 AAGTCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
*
63609557 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATTTGAGGTA
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
* * **
63609603 AAGCCGAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
63609638 TGTATATATA
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTA
Found at i:63619296 original size:49 final size:48
Alignment explanation
Indices: 63619232--63619530 Score: 460
Period size: 49 Copynumber: 6.2 Consensus size: 48
63619222 ATGATAGTAT
63619232 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
63619280 CATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATA
1 -ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
63619329 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 -ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
63619378 CATGTGATAAGGCATAATGGCCGATGTGATGAATGTGAAAGTGTATAT-
1 -ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
63619426 ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT-
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * *
63619473 ATGTGATAGGGCCGAAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 ATGTGATAAGGCCTAA-TGGCCGATGTGATGAATGTGAAAGTGTATATA
63619521 ATGTGATAAG
1 ATGTGATAAG
63619531 TCCCGAAGGG
Statistics
Matches: 236, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
47 59 0.25
48 37 0.16
49 140 0.59
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:63634960 original size:67 final size:67
Alignment explanation
Indices: 63634852--63634982 Score: 262
Period size: 67 Copynumber: 2.0 Consensus size: 67
63634842 AGTATCTGTA
63634852 ACACATGCCAAAAAACTTAGCCACTGGTATGTTGTACGGATCAACACCCAATCACAATGTAACCT
1 ACACATGCCAAAAAACTTAGCCACTGGTATGTTGTACGGATCAACACCCAATCACAATGTAACCT
63634917 CT
66 CT
63634919 ACACATGCCAAAAAACTTAGCCACTGGTATGTTGTACGGATCAACACCCAATCACAATGTAACC
1 ACACATGCCAAAAAACTTAGCCACTGGTATGTTGTACGGATCAACACCCAATCACAATGTAACC
63634983 CCTAATGACA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.21
Consensus pattern (67 bp):
ACACATGCCAAAAAACTTAGCCACTGGTATGTTGTACGGATCAACACCCAATCACAATGTAACCT
CT
Found at i:63638148 original size:43 final size:43
Alignment explanation
Indices: 63638082--63638201 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 43
63638072 TAGCTCGTAT
* * * *
63638082 GATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-ATATC
1 GATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATA-C
* *
63638124 GATGCCAATGTCCTAGACATGGTCTTACACGTAATCATAATAC
1 GATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATAC
* *
63638167 AATGCCAATGT-CTCGGACATGGTCTTACATGTAAT
1 GATGCCAATGTCCT-AGACATGGTCTTACATGTAAT
63638202 TACATCTCGG
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
42 8 0.12
43 55 0.83
44 3 0.05
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (43 bp):
GATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAATAC
Found at i:63646849 original size:16 final size:16
Alignment explanation
Indices: 63646824--63646862 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
63646814 GTAGATCGGC
63646824 AAAAGCCAAAATGCCA
1 AAAAGCCAAAATGCCA
* *
63646840 AAAAGTCAAAATGCCG
1 AAAAGCCAAAATGCCA
63646856 AAAAGCC
1 AAAAGCC
63646863 GAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.54, C:0.23, G:0.15, T:0.08
Consensus pattern (16 bp):
AAAAGCCAAAATGCCA
Found at i:63647123 original size:29 final size:29
Alignment explanation
Indices: 63647081--63647194 Score: 158
Period size: 29 Copynumber: 4.0 Consensus size: 29
63647071 GCATGTATAT
*
63647081 GAATGTGATTTGGGCCTAATGGGCCGTAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* *
63647110 GAATTTGATTTGGGCCTAATGGACCATAC
1 GAATGTGATTTGGGCCTAATGGGCCATAC
*
63647139 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGATTTGGGCCTAATGGGCCATAC
* * *
63647168 AAATGAGA-TTGGGCCTAGTGGGCCATA
1 GAATGTGATTTGGGCCTAATGGGCCATA
63647195 TGCATGTATG
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 18 0.24
29 58 0.76
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (29 bp):
GAATGTGATTTGGGCCTAATGGGCCATAC
Found at i:63648343 original size:19 final size:19
Alignment explanation
Indices: 63648296--63648343 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
63648286 ACAAAGTAAT
* * *
63648296 TAAGGTTTTTCATTCTAAG
1 TAAGGTTTTTCAATCAAAA
* *
63648315 TAAGGGTTTTCAATGAAAA
1 TAAGGTTTTTCAATCAAAA
63648334 TAAGGTTTTT
1 TAAGGTTTTT
63648344 GACAAAACAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (19 bp):
TAAGGTTTTTCAATCAAAA
Found at i:63651234 original size:30 final size:30
Alignment explanation
Indices: 63651200--63651257 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
63651190 GTGGCGCTAC
63651200 TTTGCCACTAGACCATAAGGCTTTTTTTTT
1 TTTGCCACTAGACCATAAGGCTTTTTTTTT
63651230 TTTGCCACTAGACCATAAGGCTTTTTTT
1 TTTGCCACTAGACCATAAGGCTTTTTTT
63651258 GGCACAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.45
Consensus pattern (30 bp):
TTTGCCACTAGACCATAAGGCTTTTTTTTT
Found at i:63651798 original size:22 final size:22
Alignment explanation
Indices: 63651773--63651816 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
63651763 AATTATTAAC
63651773 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* * *
63651795 ATAATTAATTTTGATTATTTTT
1 ATAATGAATTTTAATTAATTTT
63651817 GACATATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:63661919 original size:23 final size:23
Alignment explanation
Indices: 63661863--63661999 Score: 111
Period size: 23 Copynumber: 5.8 Consensus size: 23
63661853 GCCATGATCG
* *
63661863 GTAAGCTCCTTCTGAGCTGATGAATA
1 GTAAGCTCCATC-GAGCTGA--AACA
* * *
63661889 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCCATCGAGCTGAAACA
* * *
63661912 GTAAGCTCTATCGAGTTG-ATCA
1 GTAAGCTCCATCGAGCTGAAACA
63661934 GTAAGC-CCATACGAGCTGAAACA
1 GTAAGCTCCAT-CGAGCTGAAACA
63661957 GTAAGCTCCAAT-GAGCTGAAAACA
1 GTAAGCTCC-ATCGAGCTG-AAACA
63661981 GTAAGCT-CATACGAGCTGA
1 GTAAGCTCCAT-CGAGCTGA
63662000 TATATTGGTA
Statistics
Matches: 92, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
21 3 0.03
22 16 0.17
23 35 0.38
24 20 0.22
25 9 0.10
26 9 0.10
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
GTAAGCTCCATCGAGCTGAAACA
Found at i:63661950 original size:45 final size:46
Alignment explanation
Indices: 63661901--63661999 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
63661891 AAGCTCTATT
* * * *
63661901 GAGCTGAAACGGTAAGCT-CTATCGAGTTG-ATCAGTAAGCCCATAC
1 GAGCTGAAACAGTAAGCTCCAAT-GAGCTGAAACAGTAAGCCCATAC
*
63661946 GAGCTGAAACAGTAAGCTCCAATGAGCTGAAAACAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCCAATGAGCTG-AAACAGTAAGCCCATAC
63661993 GAGCTGA
1 GAGCTGA
63662000 TATATTGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 22 0.48
46 3 0.07
47 21 0.46
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (46 bp):
GAGCTGAAACAGTAAGCTCCAATGAGCTGAAACAGTAAGCCCATAC
Found at i:63665894 original size:39 final size:39
Alignment explanation
Indices: 63665840--63665947 Score: 198
Period size: 39 Copynumber: 2.8 Consensus size: 39
63665830 GAAATGTGTA
*
63665840 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTAC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
*
63665879 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
63665918 TGGAAATGTATCCGGGCTAAAGACCCGCAG
1 TGGAAATGTATCCGGGCTAAAGACCCGCAG
63665948 TCCAAGTGCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.19
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
Found at i:63671442 original size:40 final size:40
Alignment explanation
Indices: 63671417--63671939 Score: 902
Period size: 40 Copynumber: 13.1 Consensus size: 40
63671407 GGACCCAGCT
*
63671417 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
63671457 CAGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
63671497 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
63671537 CGGATACATCACTAGCACGAATGCTCTCCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
63671577 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
63671617 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
63671657 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
63671697 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
63671737 CGGATACATCACTAGCACGAATGCCCTTCGGGATTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* *
63671777 CGGATATATCACTAGCACGAATGCCCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
63671817 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
*
63671857 CGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGTC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
* * * *
63671897 CGGATATATCACTAGCACAAATGCTCTTCGGGACTTAGCC
1 CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
63671937 CGG
1 CGG
63671940 CTATACAACT
Statistics
Matches: 466, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 466 1.00
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGTC
Found at i:63674205 original size:2 final size:2
Alignment explanation
Indices: 63674198--63674224 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
63674188 ATTTGGCCAC
63674198 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
63674225 CATCTCATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:63674311 original size:65 final size:64
Alignment explanation
Indices: 63674239--63674369 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 64
63674229 TCATACATAT
63674239 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTCGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTT-GCATTAGCCATTCGGC
63674304 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTGCATTAGCCATTCGGC
1 CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTGCATTAGCCATTCGGC
63674368 CT
1 CT
63674370 TACCACATAT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 18 0.27
65 48 0.73
ACGTcount: A:0.24, C:0.31, G:0.11, T:0.34
Consensus pattern (64 bp):
CTCACATTAGCCATTTGGCTTTACCACATATCTATCTCATACACATTTGCATTAGCCATTCGGC
Found at i:63674351 original size:32 final size:32
Alignment explanation
Indices: 63674250--63674352 Score: 95
Period size: 32 Copynumber: 3.2 Consensus size: 32
63674240 TCACATTAGC
63674250 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
* * * ** *
63674282 CATTTCGCATTAGC-CAT-TCGGCCTCACATTAGC-
1 CATTTGGCTTTACCACATATC--TATCTCA-TA-CA
63674315 CATTTGGCTTTACCACATATCTATCTCATACA
1 CATTTGGCTTTACCACATATCTATCTCATACA
63674347 CATTTG
1 CATTTG
63674353 CATTAGCCAT
Statistics
Matches: 52, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
30 2 0.04
31 4 0.08
32 23 0.44
33 17 0.33
34 4 0.08
35 2 0.04
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (32 bp):
CATTTGGCTTTACCACATATCTATCTCATACA
Found at i:63674415 original size:47 final size:47
Alignment explanation
Indices: 63674353--63674568 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
63674343 TACACATTTG
* * * *
63674353 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63674400 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63674447 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
63674494 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
*
63674541 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
63674569 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
Found at i:63674458 original size:94 final size:94
Alignment explanation
Indices: 63674353--63674594 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
63674343 TACACATTTG
*
63674353 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
63674418 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* * **
63674447 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
63674512 ATCACACATACACATGTTCACATTCATCA
66 ATCACACATACACATGTTCACATTCATCA
* *
63674541 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
63674595 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACACATGTTCACATTCATCA
Found at i:63678838 original size:12 final size:12
Alignment explanation
Indices: 63678823--63678860 Score: 67
Period size: 12 Copynumber: 3.2 Consensus size: 12
63678813 ATAAAAGTGA
63678823 TATTGTATGAGG
1 TATTGTATGAGG
63678835 TATTGTATGAGG
1 TATTGTATGAGG
*
63678847 TATTGTATGTGG
1 TATTGTATGAGG
63678859 TA
1 TA
63678861 GTTATCTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.45
Consensus pattern (12 bp):
TATTGTATGAGG
Found at i:63679252 original size:14 final size:15
Alignment explanation
Indices: 63679233--63679262 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
63679223 TCTATGTTTG
63679233 TTATATGT-AAAATA
1 TTATATGTGAAAATA
63679247 TTATATGTGAAAATA
1 TTATATGTGAAAATA
63679262 T
1 T
63679263 CGTATTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (15 bp):
TTATATGTGAAAATA
Found at i:63681030 original size:39 final size:39
Alignment explanation
Indices: 63680976--63681083 Score: 198
Period size: 39 Copynumber: 2.8 Consensus size: 39
63680966 GAAATGTGTA
*
63680976 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTAC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
*
63681015 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
63681054 TGGAAATGTATCCGGGCTAAAGACCCGCAG
1 TGGAAATGTATCCGGGCTAAAGACCCGCAG
63681084 TCCAAGTGCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.27, C:0.25, G:0.29, T:0.19
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTAC
Found at i:63686355 original size:36 final size:36
Alignment explanation
Indices: 63686308--63686393 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
63686298 TACGAAGTCT
63686308 TACCCGGACATAATC-CCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63686343 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63686380 TCACCCGGAACATA
1 T-ACCCGG-ACATA
63686394 TTTCTAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 16 0.34
37 26 0.55
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:63686532 original size:49 final size:49
Alignment explanation
Indices: 63686467--63686717 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
63686457 ACATATATAT
* *
63686467 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63686516 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63686565 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63686614 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63686663 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63686712 ATATAT
1 ATATAT
63686718 TATTATGTAC
Statistics
Matches: 198, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 198 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:63689659 original size:40 final size:40
Alignment explanation
Indices: 63689606--63689757 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 40
63689596 TTATAGTGAT
*
63689606 TCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAATAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAATAAC
* ** * * * * **
63689646 TCGTATGAATGCCTTCGGGACTTAACTCGGTTTTGGTAAC
1 TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAATAAC
* * *
63689686 TCGCACAAATGCCTTCGGGAGTT-GACCCGGATTTAGTCAC
1 TCGCACAAATGCCTTCGGGAATTAG-CCCGGATTTAATAAC
* * *
63689726 TTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 -TCGCACAAATGCCTTCGGGAATTAGCCCGGA
63689758 CACCATTCAA
Statistics
Matches: 87, Mismatches: 22, Indels: 5
0.76 0.19 0.04
Matches are distributed among these distances:
40 60 0.69
41 26 0.30
42 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGGAATTAGCCCGGATTTAATAAC
Found at i:63690567 original size:40 final size:40
Alignment explanation
Indices: 63690501--63690732 Score: 383
Period size: 40 Copynumber: 5.8 Consensus size: 40
63690491 CCAGCATGAT
* * * * *
63690501 TGCTCTTCGGGACCTAGCCCGAATACATCGCTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
63690541 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
* *
63690581 TACTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
63690621 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
63690661 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
63690701 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
63690733 CTCAATTCTC
Statistics
Matches: 182, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:63692606 original size:36 final size:36
Alignment explanation
Indices: 63692559--63692644 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
63692549 TACGAAGTCT
63692559 TACCCGGACATAATC-CCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63692594 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
63692631 TCACCCGGAACATA
1 T-ACCCGG-ACATA
63692645 TTTCTAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 16 0.34
37 26 0.55
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.20
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:63692782 original size:49 final size:49
Alignment explanation
Indices: 63692715--63692958 Score: 412
Period size: 49 Copynumber: 5.1 Consensus size: 49
63692705 TACCACATAT
* *
63692715 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63692764 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63692813 ATATATATACAGTTTCACATTCATCACATCGG-C-----GCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63692856 ATATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63692904 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
63692953 ATATAT
1 ATATAT
63692959 TATTATGTAC
Statistics
Matches: 185, Mismatches: 3, Indels: 14
0.92 0.01 0.07
Matches are distributed among these distances:
42 20 0.11
43 22 0.12
48 22 0.12
49 121 0.65
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:63692890 original size:91 final size:93
Alignment explanation
Indices: 63692715--63692936 Score: 358
Period size: 91 Copynumber: 2.4 Consensus size: 93
63692705 TACCACATAT
*
63692715 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTC
1 ATATATATACACTTTCACATTCATCACATCGG-C---A-GCCTTATCACATATATATACATTTTC
63692780 ACATTCATCACATCGGCCATTAGGCCTTATCAC
61 ACATTCATCACATCGGCCATTAGGCCTTATCAC
*
63692813 ATATATATACAGTTTCACATTCATCACATCGGC-GCCTTATCACATATATATACA-TTTCACATT
1 ATATATATACACTTTCACATTCATCACATCGGCAGCCTTATCACATATATATACATTTTCACATT
63692876 CATCACATCGGCCATTAGGCCTTATCAC
66 CATCACATCGGCCATTAGGCCTTATCAC
*
63692904 ATATATATACATTTTCACATTCATCACATCGGC
1 ATATATATACACTTTCACATTCATCACATCGGC
63692937 CATTAGGCCT
Statistics
Matches: 121, Mismatches: 3, Indels: 7
0.92 0.02 0.05
Matches are distributed among these distances:
91 69 0.57
92 21 0.17
97 1 0.01
98 30 0.25
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.34
Consensus pattern (93 bp):
ATATATATACACTTTCACATTCATCACATCGGCAGCCTTATCACATATATATACATTTTCACATT
CATCACATCGGCCATTAGGCCTTATCAC
Found at i:63702506 original size:46 final size:46
Alignment explanation
Indices: 63702423--63702638 Score: 224
Period size: 46 Copynumber: 4.6 Consensus size: 46
63702413 TAGTCGATGC
* *
63702423 CATGTCCCAGACATGGTCTTACACTGACTATCA-TCTCGTAGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGGCT-TAAGTCTCGTAGCCAATG
* * *
63702470 CATGTCCCAAACATGCCTTACACTGGCTTAAGTCTCGTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCGTAGCCAATG
*
63702516 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGCCAATG
1 CATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCGTA-GCCAATG
* * * * * * *
63702562 CATATCCCAGACATGTCTTACACTAGCACT-CGTCTC-AATGCCGATTC
1 CATGTCCCAGACATGTCTTACACTGGC-TTAAGTCTCGTA-GCC-AATG
63702609 CATGTCCCAGACATGGTCTTACACTGGCTT
1 CATGTCCCAGACAT-GTCTTACACTGGCTT
63702639 TCACAATGTG
Statistics
Matches: 145, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.02
46 100 0.69
47 30 0.21
48 12 0.08
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTAAGTCTCGTAGCCAATG
Found at i:63702559 original size:92 final size:93
Alignment explanation
Indices: 63702409--63702638 Score: 272
Period size: 92 Copynumber: 2.5 Consensus size: 93
63702399 GTGGCTCACA
* *
63702409 TCTCTAGTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTAGCCAATGCAT
1 TCTCTAGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGTAGCCAATGCAT
* * *
63702473 GTCCCAAACATGCCTTACACTGGC-TTAAG
65 ATCCCAAACATGCCTTACACTAGCACT-AG
*
63702502 TCTCGTAGCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCG-AGGCCAATGCA
1 TCTC-TAGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGTA-GCCAATGCA
* * *
63702564 TATCCCAGACATGTCTTACACTAGCACTCG
64 TATCCCAAACATGCCTTACACTAGCACTAG
* *
63702594 TCTCAATGCCGATTCCATGTCCCAGACATGGTCTTACACTGGCTT
1 TCTCTA-GCCGA-TGCATGTCCCAGACATGGTCTTACACTGGCTT
63702639 TCACAATGTG
Statistics
Matches: 119, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
91 2 0.02
92 58 0.49
93 36 0.30
94 23 0.19
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (93 bp):
TCTCTAGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTATCATCTCGTAGCCAATGCATA
TCCCAAACATGCCTTACACTAGCACTAG
Found at i:63704167 original size:29 final size:29
Alignment explanation
Indices: 63704135--63704198 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
63704125 CTTCGAGCTC
* *
63704135 GCACACCCAGGGCCGTATTTTTCCAGCAT
1 GCACACCCAGGGCCATATATTTCCAGCAT
** *
63704164 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGGGCCATATATTTCCAGCAT
63704193 GCACAC
1 GCACAC
63704199 TTAGTGCCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
GCACACCCAGGGCCATATATTTCCAGCAT
Found at i:63705415 original size:24 final size:24
Alignment explanation
Indices: 63705374--63705429 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
63705364 TTTTTTTCCT
63705374 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
63705399 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
63705422 TATTCTTT
1 T-TTCTTT
63705430 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:63713316 original size:23 final size:25
Alignment explanation
Indices: 63713268--63713324 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 25
63713258 ACTTTTTTTT
63713268 TCTTTCTTTGTTTTTCATCATATTC
1 TCTTTCTTTGTTTTTCATCATATTC
**
63713293 TCTTTCTTT-TTTTTTTTCAT-TTC
1 TCTTTCTTTGTTTTTCATCATATTC
*
63713316 TTTTTCTTT
1 TCTTTCTTT
63713325 ACATAATCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 11 0.38
24 9 0.31
25 9 0.31
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.74
Consensus pattern (25 bp):
TCTTTCTTTGTTTTTCATCATATTC
Found at i:63717999 original size:42 final size:41
Alignment explanation
Indices: 63717904--63718043 Score: 165
Period size: 42 Copynumber: 3.4 Consensus size: 41
63717894 AATGATTTTT
* *
63717904 ACAAGCTGTGTATCAGCAAAGCTCCCTACTGAGCTTAAGTG
1 ACAAGCTGTGTATCAGCAATGCTCCTTACTGAGCTTAAGTG
* *
63717945 ACAAGTTGTGTATCAGCGATGCTCCTTACATGAGCTTAAGTG
1 ACAAGCTGTGTATCAGCAATGCTCCTTAC-TGAGCTTAAGTG
* * *
63717987 ATAAGCTATGTATCAGCAAAT-CTCCTTACGTGAGCTTAAGCG
1 ACAAGCTGTGTATCAGC-AATGCTCCTTAC-TGAGCTTAAGTG
* *
63718029 AAAAACTGTGTATCA
1 ACAAGCTGTGTATCA
63718044 AATAAGCTCC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
41 25 0.30
42 57 0.68
43 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (41 bp):
ACAAGCTGTGTATCAGCAATGCTCCTTACTGAGCTTAAGTG
Found at i:63718053 original size:84 final size:83
Alignment explanation
Indices: 63717906--63718072 Score: 190
Period size: 84 Copynumber: 2.0 Consensus size: 83
63717896 TGATTTTTAC
* * * ** ** * *
63717906 AAGCTGTGTATCAGCAAAGCTCCCTACTGAGCTTAAGTGACAAGTTGTGTATCAGCGATGCTCCT
1 AAGCTATGTATCAGCAAAGCTCCCTACTGAGCTTAAGCGAAAAACTGTGTATCAAAGAAGCTCCC
*
63717971 TACATGAGCTTAAGTGAT
66 TACATGAGCTTAAATGAT
* * *
63717989 AAGCTATGTATCAGCAAATCTCCTTACGTGAGCTTAAGCGAAAAACTGTGTATCAAATAAGCTCC
1 AAGCTATGTATCAGCAAAGCTCCCTAC-TGAGCTTAAGCGAAAAACTGTGTATCAAAGAAGCTCC
**
63718054 CTATGTGAGCTTAAATGAT
65 CTACATGAGCTTAAATGAT
63718073 TGTGCTCCTC
Statistics
Matches: 68, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
83 24 0.35
84 44 0.65
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (83 bp):
AAGCTATGTATCAGCAAAGCTCCCTACTGAGCTTAAGCGAAAAACTGTGTATCAAAGAAGCTCCC
TACATGAGCTTAAATGAT
Found at i:63719998 original size:40 final size:40
Alignment explanation
Indices: 63719953--63720118 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
63719943 CGGAATATAA
63719953 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63719993 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63720033 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63720072 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63720111 CCGGATAT
1 CCGGATAT
63720119 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63720075 original size:39 final size:38
Alignment explanation
Indices: 63719969--63720080 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
63719959 ATAATCACGT
* * *
63719969 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
63720009 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
63720048 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
63720081 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:63720102 original size:79 final size:78
Alignment explanation
Indices: 63719969--63720118 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
63719959 ATAATCACGT
*
63719969 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
63720034 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
63720048 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
63720111 CCGGATAT
64 CCGGATAT
63720119 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:63720962 original size:17 final size:19
Alignment explanation
Indices: 63720939--63720984 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63720929 AAGAAGCATG
63720939 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63720957 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63720975 AATCATGCTC
1 AATCATGCTC
63720985 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63727979 original size:40 final size:40
Alignment explanation
Indices: 63727934--63728100 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63727924 CGGAATATAA
63727934 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63727974 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63728014 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63728054 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63728093 CCGGATAT
1 CCGGATAT
63728101 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63728084 original size:80 final size:79
Alignment explanation
Indices: 63727934--63728100 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
63727924 CGGAATATAA
* *
63727934 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
63727999 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
63728014 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
63728076 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
63728093 CCGGATAT
1 CCGGATAT
63728101 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:63728948 original size:17 final size:19
Alignment explanation
Indices: 63728925--63728970 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63728915 AAGAAGCATG
63728925 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63728943 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63728961 AATCATGCTC
1 AATCATGCTC
63728971 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63733945 original size:40 final size:40
Alignment explanation
Indices: 63733858--63734069 Score: 203
Period size: 40 Copynumber: 5.3 Consensus size: 40
63733848 CCTTCGGAAT
* * *
63733858 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * * *
63733897 -GAAGCCCGGTTATAGTGACTCGTACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
63733937 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
63733977 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
63734017 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
63734057 TTAGCCCGGATAT
1 TTAACCCGGATAT
63734070 CATTCCAATG
Statistics
Matches: 142, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
38 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:63733983 original size:80 final size:80
Alignment explanation
Indices: 63733858--63734069 Score: 239
Period size: 80 Copynumber: 2.7 Consensus size: 80
63733848 CCTTCGGAAT
* * * ** * *** *
63733858 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGTAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
63733922 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
63733937 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
63734002 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
63734017 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
63734070 CATTCCAATG
Statistics
Matches: 109, Mismatches: 22, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 103 0.94
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:63739195 original size:17 final size:17
Alignment explanation
Indices: 63739149--63739197 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
63739139 GTATAAGGGA
63739149 GAAATAGATTGAAT-T-T
1 GAAAT-GATTGAATGTAT
*
63739165 G-AATGA-TGATTGTAT
1 GAAATGATTGAATGTAT
63739180 GAAATGATTGAATGTAT
1 GAAATGATTGAATGTAT
63739197 G
1 G
63739198 TGAAAAGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 4 0.15
14 3 0.11
15 5 0.19
16 6 0.22
17 9 0.33
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (17 bp):
GAAATGATTGAATGTAT
Found at i:63740879 original size:19 final size:19
Alignment explanation
Indices: 63740855--63740894 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
63740845 TGTGTCATCA
*
63740855 TAAATTCGTAGGCATAACT
1 TAAATTCATAGGCATAACT
*
63740874 TAAATTTATAGGCATAACT
1 TAAATTCATAGGCATAACT
63740893 TA
1 TA
63740895 CACATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:63743233 original size:40 final size:39
Alignment explanation
Indices: 63743068--63743251 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
63743058 AAATTGAATG
* * *
63743068 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
63743108 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
63743148 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
63743188 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
63743227 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
63743252 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:63743276 original size:80 final size:81
Alignment explanation
Indices: 63743108--63743296 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
63743098 GCTGGAAATT
* * * *
63743108 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
63743173 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
63743189 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
63743252 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
63743268 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
63743297 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:63747957 original size:49 final size:49
Alignment explanation
Indices: 63747890--63748128 Score: 316
Period size: 49 Copynumber: 4.8 Consensus size: 49
63747880 GTAGACAAGG
*
63747890 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * * *
63747939 TTATCTAGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
** * * * *
63747989 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* *
63748039 GTTATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
*
63748089 TTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
63748129 CAGGACCTCA
Statistics
Matches: 164, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
49 79 0.48
50 46 0.28
51 39 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:63748412 original size:27 final size:27
Alignment explanation
Indices: 63748382--63748435 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63748372 TCGTACAACC
* *
63748382 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
63748409 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
63748436 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:63754283 original size:27 final size:27
Alignment explanation
Indices: 63754253--63754306 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
63754243 TCGTACAACC
* *
63754253 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
63754280 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
63754307 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:63762263 original size:20 final size:20
Alignment explanation
Indices: 63762238--63762289 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
63762228 ATATAGTCTC
*
63762238 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
63762258 ACACGCTCGTGTAGCTTGGG
1 ACACGCCCGTGTAGCTTGGG
*
63762278 ACACTCCCGTGT
1 ACACGCCCGTGT
63762290 CCTTAACTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.13, C:0.31, G:0.33, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTAGCTTGGG
Found at i:63763215 original size:46 final size:46
Alignment explanation
Indices: 63763150--63763413 Score: 350
Period size: 46 Copynumber: 5.7 Consensus size: 46
63763140 TTATCTTCGA
* * * ** * *
63763150 CATGATGCCATAGTCTCTTTCAAGAATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
*
63763196 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
*
63763242 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
*
63763288 CATGTTGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
* * *
63763334 CATGTTGTCATGGTATCTTTCAACCATAGTCTTATTCATTT-CTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCT-GT
* * * * *
63763380 CATATTTCCATAGTGTCTTTCAACTATGGTCTTA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA
63763414 CACATTTGAA
Statistics
Matches: 194, Mismatches: 23, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
45 2 0.01
46 192 0.99
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
Found at i:63763443 original size:45 final size:45
Alignment explanation
Indices: 63763150--63763510 Score: 195
Period size: 46 Copynumber: 7.9 Consensus size: 45
63763140 TTATCTTCGA
** ***
63763150 CATGATGCCATAGTC-TCTTTCAAGAATGGTCTTACTCATTTTCTGT
1 CATGATGCCATAG-CGTCTTTCAACTATGGTCTTACTCA-TTTGAAT
* * ** * * **
63763196 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTAT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTT-GAAT
* * ** * * ***
63763242 CATGCTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTT-GAAT
* ** ** * * ***
63763288 CATGTTGCCACGGTATCTTTCAACCATGGTCTTATTCATTTCCTGT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTT-GAAT
* * * ** * * * **
63763334 CATGTTGTCATGGTATCTTTCAACCATAGTCTTATTCATTTCTCAT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTT-GAAT
* * *
63763380 CAT-ATTTCCATAGTGTCTTTCAACTATGGTCTTACACATTTGAAT
1 CATGA-TGCCATAGCGTCTTTCAACTATGGTCTTACTCATTTGAAT
* *
63763425 CATGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTTGAAT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTTGAAT
** *
63763470 TGTGATGCCATAGCGTCTTTCAATTATGGTCTTACTCATTT
1 CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTT
63763511 ATGGTATGAT
Statistics
Matches: 273, Mismatches: 38, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
45 79 0.29
46 194 0.71
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (45 bp):
CATGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTTGAAT
Found at i:63763521 original size:45 final size:44
Alignment explanation
Indices: 63763387--63763527 Score: 176
Period size: 45 Copynumber: 3.1 Consensus size: 44
63763377 CATCATATTT
* * *
63763387 CCATAGTGTCTTTCAACTATGGTCTTACACATTTGAATCATGATG
1 CCATAGCGTCTTTCAACTATGGTCTTACTCATTT-AATTATGATG
* * *
63763432 CCATAGCGTCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATG
1 CCATAGCGTCTTTCAACTATGGTCTTACTCATTT-AATTATGATG
*
63763477 CCATAGCGTCTTTCAATTATGGTCTTACTCATTT-ATGGTATGATG
1 CCATAGCGTCTTTCAACTATGGTCTTACTCATTTAAT--TATGATG
63763522 CCATAG
1 CCATAG
63763528 TCCAACTATG
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.02
45 82 0.98
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (44 bp):
CCATAGCGTCTTTCAACTATGGTCTTACTCATTTAATTATGATG
Found at i:63763572 original size:33 final size:33
Alignment explanation
Indices: 63763520--63763675 Score: 111
Period size: 33 Copynumber: 4.7 Consensus size: 33
63763510 TATGGTATGA
* * * *
63763520 TGCCATAGTCCAACTATGGTCTTACACGTGTAT
1 TGCCATAGCCCAGCCATGGTCTTACACATGTAT
* * **
63763553 TGCCATGGCCCAGCCATGGTCTTGCAC-TCGTGG
1 TGCCATAGCCCAGCCATGGTCTTACACAT-GTAT
* * ** *
63763586 TGCCATATCCTAGATATGGTCTTATCATCAAG-A-
1 TGCCATAGCCCAGCCATGGTCTTA-CA-CATGTAT
* * *
63763619 TGCCATAGCCTAGCTATGGTCTTACACATATAT
1 TGCCATAGCCCAGCCATGGTCTTACACATGTAT
*
63763652 TGCCATGGCCCAGCCATGGTCTTA
1 TGCCATAGCCCAGCCATGGTCTTA
63763676 TCCGTCAATT
Statistics
Matches: 95, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
31 2 0.02
32 4 0.04
33 85 0.89
34 2 0.02
35 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (33 bp):
TGCCATAGCCCAGCCATGGTCTTACACATGTAT
Found at i:63765517 original size:30 final size:29
Alignment explanation
Indices: 63765481--63765552 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
63765471 CATCCTTAAA
**
63765481 ATATTTACTCTATTAGTCCTTCAAATTTTC
1 ATATTTACTCT-TTAACCCTTCAAATTTTC
* * *
63765511 ATATTTACACTTTAACCCTTCAAGTTTTG
1 ATATTTACTCTTTAACCCTTCAAATTTTC
63765540 AGTATTTACTCTT
1 A-TATTTACTCTT
63765553 GTGCACCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (29 bp):
ATATTTACTCTTTAACCCTTCAAATTTTC
Found at i:63766262 original size:568 final size:567
Alignment explanation
Indices: 63765167--63766290 Score: 1739
Period size: 568 Copynumber: 2.0 Consensus size: 567
63765157 TGATGGCTCT
*
63765167 TCATCTTTCTTTCCTTATATATACTAAATAAAATAATAATAAAATAATAAAATATCATTTAAAAA
1 TCATCTTTCTTTCCATATATATACTAAATAAAATAATAATAAAATAATAAAATATCATTTAAAAA
* * *
63765232 ATAAATTAAAATATTAATAAACTATTATTTGTTTATTTGATCTAAAATATCTTCAACATTAACAT
66 ATAAATTAAAATATTAATAAACTATTATTTATTTATTTAATCTAAAATATCTTCAACATCAACAT
* *
63765297 TACCTTCTAGATTTCTCTCTCCTTCTAATTGAACATTTTCCCTTTATGATCTTTTATAATTCCAT
131 TACCTTCTAAATTTCTCTCTCCTTCTAATCGAACATTTTCCCTTTATGATCTTTTATAATTCCAT
* * *
63765362 CCTTGAGTCATCATTTAAATTTGGTAAAATTGTAATTTAGTCCCTCATAAATCTTCACCCATTCA
196 CATTGAGTCATCAATTAAATTTGGTAAAATTGCAATTTAGTCCCTCATAAATCTTCACCCATTCA
*
63765427 AATTGGTCTTAATTCATCCAGTTTTCTTAGTTTCTAGATCATTCCATCCTTAAAATATTTACTCT
261 AATTGGTCTTAATTCATCCAGTTTTCTTAGTTTCTAGATCATTCCATCCTTAAAATATTTACACT
* * * *
63765492 ATTAGTCCTTCAAATTTTCATATTTACACTTTAACCCTTCAAGTTTTGAGTATTTACTCTTGTGC
326 ATTAGTCCTTCAAATTTTCATATTTACACTTTAACCCCTCAAATTTTGAGTATTTACACTTATGC
* *
63765557 ACCAAAACTTTTCTCACTTTTACAATTTAGTCCTTTCTTGAATTAATATATTAGAATATACTCCC
391 AACAAAACTTTTCTCACTTTTACAATTTAGTCCTTTCTTGAATTAATATATCAGAATATACTCCC
* *
63765622 CAATATTGACATAACTCAAAATTTCTCTTTTTGCCACTTTATTTCCTTATTTTACTATATGAAGG
456 CAATATTGACATAACTCAAAATTTCCCTTTTTGCCACTTTATTTCCTTATTTTACTATATCAAGG
*
63765687 ATAATATCTTACTGTAAAAATTTTCGGTGTATTACATTGAAGAGCCA
521 ATAATATCTTACTGTAAAAATTTTCGGGGTATTACATTGAAGAGCCA
* *
63765734 TCATCTTTCTTTTCATATATATACT-AA-AAAA-AAT-A-AAAA-AATCAAATATCA-TTAAAAA
1 TCATCTTTCTTTCCATATATATACTAAATAAAATAATAATAAAATAATAAAATATCATTTAAAAA
63765792 ATCAAATTAAAATATTAATAAACTAATATTTATTTATTTATTTAATCTAAAATATCTTCAACATC
66 AT-AAATTAAAATATTAATAAAC---TA-TTATTTATTTATTTAATCTAAAATATCTTCAACATC
* * *
63765857 ATCATTACCTTCTAAATTTCTCTCTCCTTTTAATCGACCATTTTACCCTTTATGATCTTTTA-AA
126 AACATTACCTTCTAAATTTCTCTCTCCTTCTAATCGAACATTTT-CCCTTTATGATCTTTTATAA
* *
63765921 GTTCCATCATTGAGTCATCAATTAAATTTGGTAAAATTGCAATTTATTCCCTCATAATTCTTCAC
190 -TTCCATCATTGAGTCATCAATTAAATTTGGTAAAATTGCAATTTAGTCCCTCATAAATCTTCAC
* *
63765986 CTATTCAATTTGGTCCTT-ATTCATCCA-TTTTCCTTAGTTTCTAGATCATTCCA-CCATTAAAA
254 CCATTCAAATTGGT-CTTAATTCATCCAGTTTT-CTTAGTTTCTAGATCATTCCATCC-TTAAAA
* *
63766048 TATTTACACTATTAGTCCTTCAAAATTTTTCATATTTACTCTTTAACCCCTCAAATTTTGATTAT
316 TATTTACACTATTAGTCCTTC-AAA-TTTTCATATTTACACTTTAACCCCTCAAATTTTGAGTAT
*
63766113 TTACACTTATGCAACAAAACTTTTCTCACTTTTACGATTTAGTCCTTTCTTGAATTAATATATCA
379 TTACACTTATGCAACAAAACTTTTCTCACTTTTACAATTTAGTCCTTTCTTGAATTAATATATCA
* * *
63766178 TAATATACTCCCCAATGTTGACATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATTTT
444 GAATATACTCCCCAATATTGACATAACTCAAAATTTCCCTTTTTGCCACTTTATTTCCTTATTTT
* *
63766243 ACTATATCAAGGTTAATATCTTATTGTAAAAATTTTCGGGGTATTACA
509 ACTATATCAAGGATAATATCTTACTGTAAAAATTTTCGGGGTATTACA
63766291 AATTCAGCCA
Statistics
Matches: 509, Mismatches: 36, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
560 9 0.02
561 31 0.06
562 4 0.01
563 1 0.00
564 5 0.01
565 84 0.17
566 146 0.29
567 29 0.06
568 200 0.39
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (567 bp):
TCATCTTTCTTTCCATATATATACTAAATAAAATAATAATAAAATAATAAAATATCATTTAAAAA
ATAAATTAAAATATTAATAAACTATTATTTATTTATTTAATCTAAAATATCTTCAACATCAACAT
TACCTTCTAAATTTCTCTCTCCTTCTAATCGAACATTTTCCCTTTATGATCTTTTATAATTCCAT
CATTGAGTCATCAATTAAATTTGGTAAAATTGCAATTTAGTCCCTCATAAATCTTCACCCATTCA
AATTGGTCTTAATTCATCCAGTTTTCTTAGTTTCTAGATCATTCCATCCTTAAAATATTTACACT
ATTAGTCCTTCAAATTTTCATATTTACACTTTAACCCCTCAAATTTTGAGTATTTACACTTATGC
AACAAAACTTTTCTCACTTTTACAATTTAGTCCTTTCTTGAATTAATATATCAGAATATACTCCC
CAATATTGACATAACTCAAAATTTCCCTTTTTGCCACTTTATTTCCTTATTTTACTATATCAAGG
ATAATATCTTACTGTAAAAATTTTCGGGGTATTACATTGAAGAGCCA
Found at i:63767065 original size:42 final size:42
Alignment explanation
Indices: 63766975--63767090 Score: 98
Period size: 41 Copynumber: 2.8 Consensus size: 42
63766965 AGAATCATAC
* * *
63766975 CAATGCC-ATATCCTAGATATGGTCTTACATTGGATCTCACAT
1 CAATGCCAATAGCCCAGATATGGTCTTACA-TCGATCTCACAT
** *
63767017 TGATGCCAATAGCCCAGCTATGGTCTTACA-CGATTCTCACAT
1 CAATGCCAATAGCCCAGATATGGTCTTACATCGA-TCTCACAT
* *
63767059 CAATGCC-AT-GTTCCAGACATGGTCTTAC-TCGA
1 CAATGCCAATAG-CCCAGATATGGTCTTACATCGA
63767091 AATCTCATAC
Statistics
Matches: 59, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
40 1 0.02
41 21 0.36
42 18 0.31
43 19 0.32
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (42 bp):
CAATGCCAATAGCCCAGATATGGTCTTACATCGATCTCACAT
Found at i:63769846 original size:55 final size:55
Alignment explanation
Indices: 63769762--63769872 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
63769752 GATTGGATAA
63769762 ATCATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGT
1 ATCATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGT
*
63769817 ATCATTTGATGTAGTTACAAGTGTTACTTACCTAAATAACCATAATCTTGAGAGT
1 ATCATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGT
63769872 A
1 A
63769873 AAGCCAAAGC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.35
Consensus pattern (55 bp):
ATCATTTGATGTAGTTACAAGTGTTACTTACCTAAAAAACCATAATCTTGAGAGT
Found at i:63787313 original size:37 final size:38
Alignment explanation
Indices: 63787232--63787388 Score: 156
Period size: 38 Copynumber: 4.1 Consensus size: 38
63787222 GCAGGCTATA
* * * *
63787232 TGCTGGAAATATATCC-AGGTTAAATCTCGCAGGCTTCG
1 TGCTGGTATTATATCCGA-GTTAAATCCCACAGGCTTCG
63787270 TGCTGGTATTATATCCGAGTTAAATCCC-CAGGCTTCG
1 TGCTGGTATTATATCCGAGTTAAATCCCACAGGCTTCG
* * * * *
63787307 TACTGGTATTATATCCGTGTTAAATCCCAAAGGCCTAG
1 TGCTGGTATTATATCCGAGTTAAATCCCACAGGCTTCG
* * * *
63787345 TGCTGGTATTATATCTGAGCTTAAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATATCCGAG-TTAAA-TCCCACAGGCTTCG
63787385 TGCT
1 TGCT
63787389 AGTGACTGGA
Statistics
Matches: 99, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
37 35 0.35
38 45 0.45
39 6 0.06
40 13 0.13
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGAGTTAAATCCCACAGGCTTCG
Done.