Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 203 of 318
Found at i:63790145 original size:40 final size:40
Alignment explanation
Indices: 63790086--63790227 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
63790076 AAATTGAATG
* * *
63790086 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
63790126 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
63790166 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
63790206 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
63790228 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:63790228 original size:40 final size:39
Alignment explanation
Indices: 63790125--63790253 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
63790115 TGCTGGAAAT
* * *
63790125 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
63790165 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
63790205 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
63790245 TATATCCGG
1 TATATCCGG
63790254 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:63793258 original size:93 final size:93
Alignment explanation
Indices: 63793099--63793270 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
63793089 CGCCCATAAG
* * *
63793099 CGAACTCGGACTCAACTCAATGAGCTCAGGCATTCATATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
63793164 ACGAGTTTGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* * *
63793192 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATTCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCACATCCATAAGTGAACTCGGACTCAACTC
63793256 AACGAGTTCGGATGC
65 AACGAGTTCGGATGC
63793271 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:63793267 original size:46 final size:44
Alignment explanation
Indices: 63793093--63793266 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 44
63793083 GTAACCCGCC
* *
63793093 CATAAGCGAACTCGGACTCAACTCAATGAGCTCAGGCATT-CATAT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGCATTCCAT-T
* * * *
63793138 CCATAGGTGAACTCGGACTCAACTCAACGAGTTTGG-ATGCCTAGTT
1 -CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCC-A-TT
*
63793184 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATT
1 -CA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGG-CATTC-CATT
*
63793232 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
63793267 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
44 2 0.02
45 5 0.05
46 60 0.57
47 30 0.29
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (44 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCCATT
Found at i:63801347 original size:38 final size:38
Alignment explanation
Indices: 63801236--63801367 Score: 183
Period size: 38 Copynumber: 3.4 Consensus size: 38
63801226 AATATAACCA
*
63801236 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTTG
63801274 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTTG
** * *
63801312 GGTTAAATCCCAAAGGCCTAGTGCTGGTATTATATTTG
1 GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTTG
* *
63801350 AGATTAAAGTCCTGCAGG
1 -GGTTAAA-TCCCGCAGG
63801368 TTTTGTTCTG
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 71 0.86
39 6 0.07
40 6 0.07
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (38 bp):
GGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATTTG
Found at i:63805670 original size:40 final size:40
Alignment explanation
Indices: 63805625--63805790 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
63805615 CGGAATATAA
63805625 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
63805665 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
63805705 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63805744 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63805783 CCGGATAT
1 CCGGATAT
63805791 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63805747 original size:39 final size:38
Alignment explanation
Indices: 63805641--63805752 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
63805631 ATAATCACGT
* * *
63805641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
63805681 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
63805720 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
63805753 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:63805774 original size:79 final size:78
Alignment explanation
Indices: 63805641--63805790 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
63805631 ATAATCACGT
*
63805641 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
63805706 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
63805720 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
63805783 CCGGATAT
64 CCGGATAT
63805791 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:63806638 original size:17 final size:19
Alignment explanation
Indices: 63806615--63806660 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
63806605 AAGAAGCATG
63806615 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
63806633 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
63806651 AATCATGCTC
1 AATCATGCTC
63806661 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:63815404 original size:49 final size:49
Alignment explanation
Indices: 63815335--63815536 Score: 368
Period size: 49 Copynumber: 4.1 Consensus size: 49
63815325 GTACATAATA
*
63815335 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
* *
63815384 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
63815433 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
*
63815482 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
63815531 ATATAT
1 ATATAT
63815537 ATGTGGTAAA
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 149 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
Found at i:63815660 original size:37 final size:36
Alignment explanation
Indices: 63815605--63815691 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
63815595 AACTTAGAAA
63815605 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
63815643 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
63815680 TATGTCCGGGTA
1 TATGTCCGGGTA
63815692 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:63817567 original size:40 final size:40
Alignment explanation
Indices: 63817511--63817662 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
63817501 GAGAATTGAG
* *
63817511 AGTGATATATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
63817551 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
63817591 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
** * * *
63817631 AGCAATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
63817663 ATCATGCTGG
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 105 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:63818504 original size:40 final size:40
Alignment explanation
Indices: 63818408--63818586 Score: 180
Period size: 40 Copynumber: 4.5 Consensus size: 40
63818398 TGAATGGTGT
* * * * *
63818408 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTATGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAAA
* *
63818449 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
63818489 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
63818529 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
63818569 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
63818587 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
40 88 0.78
41 25 0.22
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:63818546 original size:80 final size:80
Alignment explanation
Indices: 63818408--63818628 Score: 214
Period size: 80 Copynumber: 2.8 Consensus size: 80
63818398 TGAATGGTGT
* * * * *
63818408 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTATGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGA-GTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
63818473 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
63818489 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
63818553 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * * * * *
63818569 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCC-GGTTAAATCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAACTCCCGAAGGCA
63818629 CGTGATTCGG
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
79 16 0.14
80 73 0.64
81 25 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:63818607 original size:40 final size:40
Alignment explanation
Indices: 63818529--63818625 Score: 99
Period size: 40 Copynumber: 2.5 Consensus size: 40
63818519 GTTATTAAAT
* * *
63818529 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
63818569 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
* *
63818609 CC-GGTTAAATCCCGAAG
1 CCGGGCTAATTCCCGAAG
63818626 GCACGTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
39 13 0.28
40 34 0.72
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.21
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:63820862 original size:49 final size:49
Alignment explanation
Indices: 63820793--63821062 Score: 443
Period size: 49 Copynumber: 5.5 Consensus size: 49
63820783 GTACATAATA
63820793 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
63820842 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
63820891 ATATATGTGATAAGGCCTAATGGCTGATGTAATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
63820940 ATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
63820988 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--ATGTAT
* * *
63821039 ATATATGTGGTAAAGCCGAATGGC
1 ATATATGTGATAAGGCCTAATGGC
63821063 TAATGTGAAT
Statistics
Matches: 207, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 47 0.23
49 134 0.65
51 26 0.13
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:63820992 original size:146 final size:149
Alignment explanation
Indices: 63820793--63821073 Score: 478
Period size: 146 Copynumber: 1.9 Consensus size: 149
63820783 GTACATAATA
63820793 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* * * *
63820858 CTAATGGCCGATGTGATGAATGTGAAA-CTGTATATATATGTGATAAGGCCTAATGGCTGATGT-
66 CTAATGGCCGACGTGATGAATGTGAAAGCTGTATATATATGTGATAAAGCCGAATGGCTAATGTG
63820921 AATGAATGTGAAAATGTAT
131 AATGAATGTGAAAATGTAT
63820940 ATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* *
63821004 CTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATATGTGGTAAAGCCGAATGGCTAATGT
66 CTAATGGCCGACGTGATGAATGTGAAAG-CTGTATATATATGTGATAAAGCCGAATGGCTAATGT
63821069 GAATG
130 GAATG
63821074 TTGTAACATG
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
146 64 0.51
147 26 0.21
148 31 0.25
149 4 0.03
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.31
Consensus pattern (149 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
CTAATGGCCGACGTGATGAATGTGAAAGCTGTATATATATGTGATAAAGCCGAATGGCTAATGTG
AATGAATGTGAAAATGTAT
Found at i:63821166 original size:37 final size:36
Alignment explanation
Indices: 63821111--63821197 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
63821101 AACTTAGAAA
63821111 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
63821149 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
63821186 TATGTCCGGGTA
1 TATGTCCGGGTA
63821198 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:63825934 original size:29 final size:29
Alignment explanation
Indices: 63825902--63826059 Score: 203
Period size: 29 Copynumber: 5.4 Consensus size: 29
63825892 AGTGAATCCA
63825902 CACACTTAGTGCTATATATTTTCAGCTCG
1 CACACTTAGTGCTATATATTTTCAGCTCG
63825931 CACACTTAGTGCTATATAATTTTCAGCTCG
1 CACACTTAGTGCTATAT-ATTTTCAGCTCG
63825961 CACACTTAGTGCTATATATTTTCAGCTCG
1 CACACTTAGTGCTATATATTTTCAGCTCG
* * *
63825990 CACACTTAGTGCTGTATA--ATCAAACTCG
1 CACACTTAGTGCTATATATTTTC-AGCTCG
* * * * *
63826018 CACACTTAGTGCTGTACAATTTTAAACCCG
1 CACACTTAGTGCTATA-TATTTTCAGCTCG
63826048 CACACTTAGTGC
1 CACACTTAGTGC
63826060 CAATCTTGTC
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.18
29 47 0.40
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (29 bp):
CACACTTAGTGCTATATATTTTCAGCTCG
Found at i:63825955 original size:30 final size:30
Alignment explanation
Indices: 63825902--63826059 Score: 209
Period size: 30 Copynumber: 5.4 Consensus size: 30
63825892 AGTGAATCCA
63825902 CACACTTAGTGCTATAT-ATTTTCAGCTCG
1 CACACTTAGTGCTATATAATTTTCAGCTCG
63825931 CACACTTAGTGCTATATAATTTTCAGCTCG
1 CACACTTAGTGCTATATAATTTTCAGCTCG
63825961 CACACTTAGTGCTATAT-ATTTTCAGCTCG
1 CACACTTAGTGCTATATAATTTTCAGCTCG
* *
63825990 CACACTTAGTGCTGTATAA---TCAAACTCG
1 CACACTTAGTGCTATATAATTTTC-AGCTCG
* * * * *
63826018 CACACTTAGTGCTGTACAATTTTAAACCCG
1 CACACTTAGTGCTATATAATTTTCAGCTCG
63826048 CACACTTAGTGC
1 CACACTTAGTGC
63826060 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 45 0.38
30 47 0.40
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CACACTTAGTGCTATATAATTTTCAGCTCG
Found at i:63825977 original size:59 final size:57
Alignment explanation
Indices: 63825902--63826059 Score: 210
Period size: 59 Copynumber: 2.7 Consensus size: 57
63825892 AGTGAATCCA
*
63825902 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCTCG
1 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACTCG
*
63825961 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACTCG
1 CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACTCG
* * * * *
63826018 CACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
63826060 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 47 0.52
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (57 bp):
CACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACTCG
Found at i:63831057 original size:21 final size:21
Alignment explanation
Indices: 63831031--63831070 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
63831021 CTTAGAGTGG
*
63831031 AGGCAGCAGCGCGGGAGGCGA
1 AGGCAGCAGCGAGGGAGGCGA
63831052 AGGCAGCAGCGAGGGAGGC
1 AGGCAGCAGCGAGGGAGGC
63831071 TGAGCAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.23, G:0.53, T:0.00
Consensus pattern (21 bp):
AGGCAGCAGCGAGGGAGGCGA
Found at i:63831448 original size:42 final size:42
Alignment explanation
Indices: 63831368--63831657 Score: 314
Period size: 42 Copynumber: 6.7 Consensus size: 42
63831358 ATTAGGCAAA
* *
63831368 TTAGCGGCGTTTTTATAAAACAAGCGCCGCTAAAAGTCCTATTCT
1 TTAGCGGCGTTTTTCT--AA-AAGCGCCGCTAAAAGTCCTAGTCT
* *
63831413 TTAGCGGTGTTTTTCTAAAAGCGCCGCTAAAAGTCCTTGTCT
1 TTAGCGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTAGTCT
* * *
63831455 TTAGCGGTGTTTTTCTAAAGGCGCCGCTAAAAGTCCTATTCT
1 TTAGCGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTAGTCT
* * *
63831497 TTAGCGGCATTTTTCTAAAGGCGCCGCTAAAAGCCCTAGTCT
1 TTAGCGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTAGTCT
* * * *
63831539 TTAACGGCGTTTGTT-TGAAAAAAACGCTGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTT-TTCT---AAAAGCGCCGCTAAAAGTCCTAGTCT
* * * *
63831584 TCAACGGCGTTTTTCTAAAAGGGCCGCTAAAAGTCCTCGTCT
1 TTAGCGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTAGTCT
*
63831626 TTAGCGGTGTTTTT-TAAAAAAGCGCCGCTAAA
1 TTAGCGGCGTTTTTCT--AAAAGCGCCGCTAAA
63831658 GACGAGGACT
Statistics
Matches: 211, Mismatches: 27, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.00
42 143 0.68
43 18 0.09
44 2 0.01
45 47 0.22
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (42 bp):
TTAGCGGCGTTTTTCTAAAAGCGCCGCTAAAAGTCCTAGTCT
Found at i:63831512 original size:84 final size:84
Alignment explanation
Indices: 63831368--63831657 Score: 348
Period size: 87 Copynumber: 3.4 Consensus size: 84
63831358 ATTAGGCAAA
* *
63831368 TTAGCGGCGTTTTTATAAAACAAGCGCCGCTAAAAGTCCTATTCTTTAGCGGTGTTTTTCTAAAA
1 TTAGCGGTGTTTTT-T-AAA-AAGCGCCGCTAAAAGTCCTATTCTTTAGCGGCGTTTTTCTAAAA
*
63831433 GCGCCGCTAAAAGTCCTTGTCT
63 GCGCCGCTAAAAGTCCTAGTCT
* * *
63831455 TTAGCGGTGTTTTTCT-AAAGGCGCCGCTAAAAGTCCTATTCTTTAGCGGCATTTTTCTAAAGGC
1 TTAGCGGTGTTTTT-TAAAAAGCGCCGCTAAAAGTCCTATTCTTTAGCGGCGTTTTTCTAAAAGC
*
63831519 GCCGCTAAAAGCCCTAGTCT
65 GCCGCTAAAAGTCCTAGTCT
* * * * ** * *
63831539 TTAACGGCGTTTGTTTGAAAAAAACGCTGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAA
1 TTAGCGGTGTTT-TTT--AAAAAGCGCCGCTAAAAGTCCTATTCTTTAGCGGCGTTTTTCTAAAA
* *
63831604 GGGCCGCTAAAAGTCCTCGTCT
63 GCGCCGCTAAAAGTCCTAGTCT
63831626 TTAGCGGTGTTTTTTAAAAAAGCGCCGCTAAA
1 TTAGCGGTGTTTTTT-AAAAAGCGCCGCTAAA
63831658 GACGAGGACT
Statistics
Matches: 173, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
84 71 0.41
85 19 0.11
86 3 0.02
87 80 0.46
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (84 bp):
TTAGCGGTGTTTTTTAAAAAGCGCCGCTAAAAGTCCTATTCTTTAGCGGCGTTTTTCTAAAAGCG
CCGCTAAAAGTCCTAGTCT
Found at i:63831639 original size:129 final size:126
Alignment explanation
Indices: 63831368--63831657 Score: 325
Period size: 129 Copynumber: 2.2 Consensus size: 126
63831358 ATTAGGCAAA
* * * * *
63831368 TTAGCGGCGTTTTTATAAAACAAGCGCCGCTAAAAGTCCTATTCTTTAGCGGTGTTTTTCTAAAA
1 TTAGCGGCATTTTT-T-AAA-AAGCGCCGCTAAAAGCCCTAGTCTTTAACGGCGTTTTTCTAAAA
* * * * * *
63831433 GCGCCGCTAAAAGTCCTTGTCTTTAGCGGTGTTTTTCTAAAGGCGCCGCTAAAAGTCCTATTCT
63 ACGCCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAGGCGCCGCTAAAAGTCCTAGTCT
*
63831497 TTAGCGGCATTTTTCT-AAAGGCGCCGCTAAAAGCCCTAGTCTTTAACGGCGTTTGTT-TGAAAA
1 TTAGCGGCATTTTT-TAAAAAGCGCCGCTAAAAGCCCTAGTCTTTAACGGCGTTT-TTCT---AA
* *
63831560 AAACGCTGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAAGG-GCCGCTAAAAGTCCTCGT
61 AAACGCCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCT-AAAGGCGCCGCTAAAAGTCCTAGT
63831624 CT
125 CT
**
63831626 TTAGCGGTGTTTTTTAAAAAAGCGCCGCTAAA
1 TTAGCGGCATTTTTT-AAAAAGCGCCGCTAAA
63831658 GACGAGGACT
Statistics
Matches: 136, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
126 32 0.24
127 4 0.03
128 1 0.01
129 80 0.59
130 19 0.14
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.32
Consensus pattern (126 bp):
TTAGCGGCATTTTTTAAAAAGCGCCGCTAAAAGCCCTAGTCTTTAACGGCGTTTTTCTAAAAACG
CCGCTAAAAGTCCTGGTCTTCAACGGCGTTTTTCTAAAGGCGCCGCTAAAAGTCCTAGTCT
Found at i:63832431 original size:18 final size:18
Alignment explanation
Indices: 63832408--63832445 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
63832398 GACCCTCGTG
63832408 GTAACGAGTTCAACCATT
1 GTAACGAGTTCAACCATT
63832426 GTAACGAGTTCAACCATT
1 GTAACGAGTTCAACCATT
63832444 GT
1 GT
63832446 TTAGCCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (18 bp):
GTAACGAGTTCAACCATT
Found at i:63847255 original size:16 final size:16
Alignment explanation
Indices: 63847236--63847266 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63847226 CTTCTTCACT
63847236 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63847252 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63847267 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63847272 original size:20 final size:20
Alignment explanation
Indices: 63847233--63847272 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63847223 AAACTTCTTC
* *
63847233 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATAAAAT
*
63847253 ACTTACTTACTTAATAAAAT
1 ACTTACTCACTTAATAAAAT
63847273 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATAAAAT
Found at i:63847587 original size:53 final size:54
Alignment explanation
Indices: 63847457--63847711 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
63847447 ACACGGGTAC
* * * *
63847457 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGAATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
63847506 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
63847559 CTCACCAATGCCATGCCTTGGCATGGTCTTACGTGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * *
63847614 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
63847667 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63847712 AAACCCTAAT
Statistics
Matches: 168, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.29
54 10 0.06
55 68 0.40
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:63847648 original size:108 final size:110
Alignment explanation
Indices: 63847504--63847700 Score: 292
Period size: 108 Copynumber: 1.8 Consensus size: 110
63847494 ATCCTTTTGA
* * *
63847504 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTA-GAAACCTCACCAA
63847567 -TGCCATGCCTTGGCATGGTCTTACGTGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACGTGGGACCTTTGCCTTATAGT
* ** *
63847612 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTAGAAACCTCACCAAT
*
63847677 TTCCATGCCTTGGCATGGTCTTAC
66 TGCCATGCCTTGGCATGGTCTTAC
63847701 ACGGTATCCT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.60
109 7 0.09
110 23 0.29
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTACCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACGTGGGACCTTTGCCTTATAGT
Found at i:63859438 original size:20 final size:20
Alignment explanation
Indices: 63859413--63859476 Score: 110
Period size: 20 Copynumber: 3.2 Consensus size: 20
63859403 TAAACAGGAT
63859413 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63859433 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
63859453 ATGTATGATATGCACATGAG
1 ATGTATGATATGCACATGAC
63859473 ATGT
1 ATGT
63859477 TCATAAATGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:63859453 original size:11 final size:11
Alignment explanation
Indices: 63859417--63859471 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63859407 CAGGATATGT
63859417 ATGATATGCAC
1 ATGATATGCAC
* *
63859428 ATGACATG--T
1 ATGATATGCAC
63859437 ATGATATGCAC
1 ATGATATGCAC
*
63859448 ATGATATG--T
1 ATGATATGCAC
63859457 ATGATATGCAC
1 ATGATATGCAC
63859468 ATGA
1 ATGA
63859472 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63859553 original size:23 final size:23
Alignment explanation
Indices: 63859523--63859641 Score: 220
Period size: 23 Copynumber: 5.1 Consensus size: 23
63859513 AGGAAGTGCA
63859523 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
63859546 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
63859570 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63859593 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63859616 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63859639 AAA
1 AAA
63859642 AGAGGCTAGG
Statistics
Matches: 93, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
23 71 0.76
24 22 0.24
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:63859590 original size:47 final size:47
Alignment explanation
Indices: 63859521--63859641 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
63859511 GGAGGAAGTG
63859521 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
63859568 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
63859615 -TAAAGGGCTTATGCCCCAGTTATTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
63859642 AGAGGCTAGG
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
46 26 0.36
47 47 0.64
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:63859636 original size:70 final size:71
Alignment explanation
Indices: 63859523--63859662 Score: 239
Period size: 70 Copynumber: 2.0 Consensus size: 71
63859513 AGGAAGTGCA
*
63859523 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CC
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTCC
63859586 AGTTATT
65 AGTTATT
*
63859593 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCA
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCA
63859658 GTTAT
66 GTTAT
63859663 ATGATAAAGC
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
70 55 0.83
71 11 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (71 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCA
GTTATT
Found at i:63859891 original size:31 final size:31
Alignment explanation
Indices: 63859856--63859919 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
63859846 CATTTACCGT
* *
63859856 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
63859887 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
63859918 AA
1 AA
63859920 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:63868231 original size:47 final size:46
Alignment explanation
Indices: 63868114--63868286 Score: 198
Period size: 45 Copynumber: 3.8 Consensus size: 46
63868104 GGATGGTTGA
63868114 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTA-GGATGCGAAT
* *
63868161 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GT-GAGATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAG-GATGCGAA-T
63868204 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TA-GGATGCGAAT
* *
63868253 -CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
63868287 TAGGGGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 24
0.78 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
45 31 0.28
46 31 0.28
47 30 0.28
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTAGGATGCGAAT
Found at i:63868283 original size:93 final size:92
Alignment explanation
Indices: 63868114--63868283 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
63868104 GGATGGTTGA
***
63868114 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACACCCGAACTCGTTGAGTT
63868179 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
63868206 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACACCCGAACTCGTTGAGT
63868271 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
63868284 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 34 0.47
93 39 0.53
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACACCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63869981 original size:15 final size:15
Alignment explanation
Indices: 63869961--63869989 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
63869951 ACAATTTTAA
63869961 AATAAAACGTACCTT
1 AATAAAACGTACCTT
63869976 AATAAAACGTACCT
1 AATAAAACGTACCT
63869990 GATCTGCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (15 bp):
AATAAAACGTACCTT
Found at i:63870902 original size:21 final size:20
Alignment explanation
Indices: 63870878--63870917 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
63870868 GTTGGATAGA
*
63870878 AACATGAAAAAAGACCAAAAG
1 AACATCAAAAAA-ACCAAAAG
*
63870899 AACATCTAAAAAACCAAAA
1 AACATCAAAAAAACCAAAA
63870918 TGGAATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.68, C:0.17, G:0.07, T:0.07
Consensus pattern (20 bp):
AACATCAAAAAAACCAAAAG
Found at i:63877488 original size:10 final size:10
Alignment explanation
Indices: 63877444--63877473 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
63877434 ACCACTTTTC
*
63877444 ATATATATAT
1 ATATATTTAT
63877454 ATATATTTAT
1 ATATATTTAT
63877464 ATATATTTAT
1 ATATATTTAT
63877474 CTTATATACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
ATATATTTAT
Found at i:63877519 original size:25 final size:28
Alignment explanation
Indices: 63877491--63877549 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
63877481 ACATTTATCT
*
63877491 TCTAAA-TTAAAATCC-AAAATT-ATAC
1 TCTAAATTTAAAACCCTAAAATTGATAC
*
63877516 TCTAAATTTAAAACCCTAAACTTGATAC
1 TCTAAATTTAAAACCCTAAAATTGATAC
63877544 TCTAAA
1 TCTAAA
63877550 CCCTAAACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 6 0.21
26 8 0.28
27 5 0.17
28 10 0.34
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.32
Consensus pattern (28 bp):
TCTAAATTTAAAACCCTAAAATTGATAC
Found at i:63878357 original size:14 final size:14
Alignment explanation
Indices: 63878331--63878375 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
63878321 TAAACCTGCT
*
63878331 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
63878345 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
63878359 TAAACCTTAAACTA
1 TAAACCTTAAACCA
63878373 TAA
1 TAA
63878376 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:63878627 original size:40 final size:40
Alignment explanation
Indices: 63878532--63878669 Score: 188
Period size: 41 Copynumber: 3.4 Consensus size: 40
63878522 GTTATATGAC
63878532 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTAGT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTA-T
*
63878573 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTAT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTAT
* **
63878613 TTTTAGCGGCGTTTTTTTACTAAAA-CGGCGCTGTTGCTCTAT
1 TTTTAGCGGCG---TTTTACTAAAAGCGCCGCTAATGCTCTAT
*
63878655 TTTTAGCAGCGTTTT
1 TTTTAGCGGCGTTTT
63878670 TTTTTAAAAT
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
39 4 0.05
40 12 0.14
41 38 0.43
42 24 0.27
43 10 0.11
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTAT
Found at i:63878701 original size:42 final size:42
Alignment explanation
Indices: 63878543--63878693 Score: 139
Period size: 41 Copynumber: 3.6 Consensus size: 42
63878533 TTTAGCGGCG
* * *
63878543 TTTTACTAAAAGCGCCGCTAATGCTCTAGTTTTTAGCGGCG---
1 TTTTACTAAAA-CGCCACTATTGCTCTA-TTTTTAGCAGCGTTT
* * * *
63878584 TTTTACCAAAAGCGCCGCTAATGCTCTATTTTTAGCGGCGTTT
1 TTTTACTAAAA-CGCCACTATTGCTCTATTTTTAGCAGCGTTT
* * *
63878627 TTTTACTAAAACGGCGCTGTTGCTCTATTTTTAGCAGCGTTT
1 TTTTACTAAAACGCCACTATTGCTCTATTTTTAGCAGCGTTT
* *
63878669 TTTT-TTAAAATGCCACTATTGCTCT
1 TTTTACTAAAACGCCACTATTGCTCT
63878694 GTATTTTAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 12 0.12
41 43 0.45
42 31 0.32
43 10 0.10
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (42 bp):
TTTTACTAAAACGCCACTATTGCTCTATTTTTAGCAGCGTTT
Found at i:63880344 original size:27 final size:28
Alignment explanation
Indices: 63880314--63880413 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
63880304 ATAGTGAGTC
63880314 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
63880341 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
63880369 CGCACACTTAGTGCTGTACAAATTAAAAACC
1 CGCACACTTAGTGCTATA-AAA-T-CAAACT
63880400 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63880414 CATTCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
30 1 0.02
31 18 0.29
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:63897673 original size:17 final size:18
Alignment explanation
Indices: 63897631--63897679 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
63897621 AGTTGAAAAG
63897631 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
63897650 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
63897667 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
63897680 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:63898568 original size:40 final size:40
Alignment explanation
Indices: 63898502--63898668 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
63898492 AAATTGAATG
* * *
63898502 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
63898541 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
63898581 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
63898621 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
63898661 ATATCCGG
1 ATATCCGG
63898669 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:63909827 original size:28 final size:27
Alignment explanation
Indices: 63909764--63909833 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
63909754 ATAGTGAGTC
*
63909764 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63909791 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63909819 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63909834 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63917767 original size:28 final size:27
Alignment explanation
Indices: 63917704--63917773 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
63917694 ATAGTGAGTC
*
63917704 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
63917731 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
63917759 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63917774 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63928577 original size:40 final size:40
Alignment explanation
Indices: 63928518--63928725 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 40
63928508 CATTGGAATG
* * * *
63928518 ATATCCGGGCTATGTCCCGAAGGCAATTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
**
63928558 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATT
* * * **
63928598 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* * *
63928638 AAATCCGGGTTAAGACCCGAAGGCAATTGTGCGAGTCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
* ** * * *
63928678 ATAACCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
63928718 ATATCCGG
1 ATATCCGG
63928726 TTAAATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATT
Found at i:63934090 original size:37 final size:37
Alignment explanation
Indices: 63933946--63934090 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
63933936 GCTCAGACGA
* * * *
63933946 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
*
63933983 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
63934020 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
*
63934057 AATCTCCACACGTAGTCATCGGGTCTTATCCAGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCAGA
63934091 ATATATTTTC
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
Found at i:63934362 original size:48 final size:48
Alignment explanation
Indices: 63934236--63934420 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
63934226 GCACATCGCC
*
63934236 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
63934286 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
63934334 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
63934382 TACATATTTCACATTAGCCATTCGGCTATACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
63934421 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:63934425 original size:98 final size:97
Alignment explanation
Indices: 63934236--63934419 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
63934226 GCACATCGCC
*
63934236 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
*
63934301 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTATACCACATATGCATATCTCA
* *
63934334 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
63934397 AGCCATTCGGCTATACCACATAT
66 A-CCATTCAGCTATACCACATAT
63934420 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 34 0.43
98 45 0.56
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTATACCACATATGCATATCTCA
Found at i:63934483 original size:47 final size:47
Alignment explanation
Indices: 63934390--63934583 Score: 275
Period size: 47 Copynumber: 4.1 Consensus size: 47
63934380 CATACATATT
* * *
63934390 TCACATTAGCCATTCGG-CTATACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCT-TATCACATATATGCATGTTCACATTCA
* *
63934437 TCACATTGGCCATTCGGCCTTATCACACATAT-CAATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGC-ATGTTCACATTCA
63934484 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
63934531 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
63934578 TCACAT
1 TCACAT
63934584 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 129 0.97
48 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:63934510 original size:22 final size:22
Alignment explanation
Indices: 63934483--63934554 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
63934473 GCTCACATTC
63934483 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
63934505 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
63934529 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
63934552 ATC
1 ATC
63934555 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:63940243 original size:43 final size:43
Alignment explanation
Indices: 63940118--63940244 Score: 123
Period size: 43 Copynumber: 3.0 Consensus size: 43
63940108 CAGAAAGCTC
* * * * *
63940118 ATACAATGCCAACGTCCCAGATGTGGTCTTACATGT-GATCAA
1 ATACGATGCCAATGTCCCAGATATGGTCTTACAAGTAAATCAA
* * * * *
63940160 ATATTGATGCTACTGTCCCAGATAGGGTCTTACACG-AAATCAA
1 ATA-CGATGCCAATGTCCCAGATATGGTCTTACAAGTAAATCAA
* *
63940203 ATACGATGCCAATGTTCCAGACATGGTCTTACAAGTAAATCA
1 ATACGATGCCAATGTCCCAGATATGGTCTTACAAGTAAATCA
63940245 TAAGTCAATG
Statistics
Matches: 66, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
42 28 0.42
43 38 0.58
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (43 bp):
ATACGATGCCAATGTCCCAGATATGGTCTTACAAGTAAATCAA
Found at i:63945327 original size:21 final size:21
Alignment explanation
Indices: 63945302--63945341 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63945292 TCTTTAGTCT
63945302 TGAT-GATAAATCCGGCTTCTA
1 TGATGGATAAAT-CGGCTTCTA
*
63945323 TGATGGATCAATCGGCTTC
1 TGATGGATAAATCGGCTTC
63945342 CCTTGAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (21 bp):
TGATGGATAAATCGGCTTCTA
Found at i:63947900 original size:15 final size:16
Alignment explanation
Indices: 63947880--63947917 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
63947870 ACTTGGAAAG
*
63947880 ATGAAAA-GTGATTAA
1 ATGAAAATGTAATTAA
*
63947895 ATGAAAATTTAATTAA
1 ATGAAAATGTAATTAA
63947911 ATGAAAA
1 ATGAAAA
63947918 AGAAAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (16 bp):
ATGAAAATGTAATTAA
Found at i:63948254 original size:20 final size:20
Alignment explanation
Indices: 63948229--63948269 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
63948219 ACTAAAATGT
*
63948229 AAAATTGTGAAATTTGATGA
1 AAAATTCTGAAATTTGATGA
* *
63948249 AAAATTCTGAATTTTTATGA
1 AAAATTCTGAAATTTGATGA
63948269 A
1 A
63948270 TACATGTGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.39
Consensus pattern (20 bp):
AAAATTCTGAAATTTGATGA
Found at i:63952064 original size:48 final size:48
Alignment explanation
Indices: 63951837--63952064 Score: 233
Period size: 48 Copynumber: 4.8 Consensus size: 48
63951827 TAAAGTACCA
* * * ** * *
63951837 ATGCCATGTCCCCGAGATGGTCTTACATGAATC-CACATATCATCACCA
1 ATGCCATGTCCCAGACATGGTCTTACA-CAGGCACATATATCATCACCG
* * * * *
63951885 ATGCCATGTCCCAGACACGGTCTTACACTGGCACACATATCATCTCTG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* * *
63951933 ATGCCATATCCCAGACATGGTCTTACACAGGCACATATATCCTCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* * *
63951981 ATGCCATGTCCCAGGCATGGTCTTACGCAAGCACATATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
* ** * *
63952029 ATTCCATCCCCCATACATGGTCTTTCACAGGCACAT
1 ATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
63952065 TTAGCACGGT
Statistics
Matches: 148, Mismatches: 31, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
47 1 0.01
48 147 0.99
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACAGGCACATATATCATCACCG
Found at i:63952445 original size:30 final size:30
Alignment explanation
Indices: 63952409--63952490 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
63952399 TCATGATATG
*
63952409 ACAAAATTACAATTTTTCCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
63952439 ACAAAATTACAATTTTGCCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
**
63952469 ACAAAATTACAAAATTGCCCCT
1 ACAAAATTACAATTTTGCCCCT
63952491 AGGCTCGTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (30 bp):
ACAAAATTACAATTTTGCCCCTCATAGTTT
Found at i:63959758 original size:48 final size:49
Alignment explanation
Indices: 63959628--63959760 Score: 143
Period size: 48 Copynumber: 2.8 Consensus size: 49
63959618 ATGATTCTAC
* *
63959628 ATATCATCGTCGATGCCATGTCCCAGACATGGTCCTAGACTAGCAGACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTAGACTAG-AGACAT
* *
63959678 ATA--ATCGCCAATGCCATG-CACCAAACATGGTCTTATG-C-AG-GTACAT
1 ATATCATCGCCGATGCCATGTC-CCAGACATGGTCTTA-GACTAGAG-ACAT
*
63959724 ATATCATCACCGATGCCATGTCCCAGACATGGTCTTA
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTA
63959761 CACAGGCACA
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
45 1 0.01
46 7 0.10
47 3 0.04
48 54 0.77
49 2 0.03
50 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTAGACTAGAGACAT
Found at i:63962057 original size:29 final size:29
Alignment explanation
Indices: 63961995--63962097 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
63961985 GTGACGAGAT
* * *
63961995 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
63962024 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
63962053 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
63962082 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63962098 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:63970664 original size:29 final size:29
Alignment explanation
Indices: 63970631--63970704 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
63970621 GTGACGAGAT
63970631 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
63970660 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63970689 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63970705 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63970720 original size:29 final size:29
Alignment explanation
Indices: 63970688--63970762 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
63970678 CTGGAAATAT
* *
63970688 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
* * * *
63970717 ATGGCACT-TGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
63970745 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
63970763 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 22 0.59
29 15 0.41
ACGTcount: A:0.23, C:0.20, G:0.35, T:0.23
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:63978549 original size:29 final size:29
Alignment explanation
Indices: 63978516--63978647 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
63978506 GTGACGAGAT
*
63978516 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
63978545 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
63978574 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
63978603 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
63978632 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
63978648 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:63984283 original size:49 final size:50
Alignment explanation
Indices: 63984222--63984343 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 50
63984212 TCAAGTCGAT
*
63984222 GCCATGTTCCAAACATGGTCTTACACTAACTATCA-AAATCAAG-GCTGAG
1 GCCATGTCCCAAACATGGTCTTACACTAACTATCACAAATC-AGTGCTGAG
* * * * * * *
63984271 GCCATGTCCCAAACATGGTCTTGCACTAGCTCTCACATATCTGTGCTTAT
1 GCCATGTCCCAAACATGGTCTTACACTAACTATCACAAATCAGTGCTGAG
*
63984321 GCCATGTCCCAGACATGGTCTTA
1 GCCATGTCCCAAACATGGTCTTA
63984344 GACTGACACA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 32 0.52
50 29 0.48
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTAACTATCACAAATCAGTGCTGAG
Found at i:63984425 original size:46 final size:44
Alignment explanation
Indices: 63984323--63984436 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
63984313 GTGCTTATGC
*
63984323 CATGTCCCAGACATGGTCTTAGACTGACACATCTCGTAGCCAATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTCGTAGCCAATG
* * *
63984368 -ATGTCCCAGACATGTCTTACACTGGCTTATATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTCGTA-GCCAATG
63984413 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
63984437 AGCTCTCGTC
Statistics
Matches: 61, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
43 11 0.18
44 14 0.23
45 13 0.21
46 23 0.38
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTCGTAGCCAATG
Found at i:63984456 original size:46 final size:47
Alignment explanation
Indices: 63984368--63984487 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 47
63984358 GTAGCCAATG
* * *
63984368 ATGTCCCAGACATGTCTTACACTGGCTTATATCTCGAGGCCGATG-C
1 ATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCGATGTC
* *
63984414 ATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATGTC
1 ATGTCCCAGACATGTCTTACACTAGCT-TACATCTCAAGGCCGATGTC
* *
63984461 ATGTCCGAAACATGGTCTTACACTAGC
1 ATGTCCCAGACAT-GTCTTACACTAGC
63984488 ACACAAATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
46 38 0.59
47 13 0.20
48 13 0.20
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAGGCCGATGTC
Found at i:63988374 original size:42 final size:42
Alignment explanation
Indices: 63988327--63988408 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
63988317 GAGGATGAAT
* *
63988327 ACTTAGCGTTGTTAGAAGCTAATCAAAAGGGATTTAATCCAC
1 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCAC
63988369 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCC
1 ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCC
63988409 GCAATCCCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (42 bp):
ACTTAGCGTTGTTAGAAGCTAAACAAAAGAGATTTAATCCAC
Found at i:63991774 original size:22 final size:19
Alignment explanation
Indices: 63991744--63991790 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
63991734 AAAGATGATA
63991744 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
63991767 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
63991786 ATTAT
1 ATTAT
63991791 CAACTTTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:63991786 original size:16 final size:15
Alignment explanation
Indices: 63991746--63991787 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
63991736 AGATGATAAT
63991746 TATTAATATATAATTA
1 TATTAAT-TATAATTA
63991762 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
63991778 TATTAATTAT
1 TATTAATTAT
63991788 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:63998775 original size:16 final size:16
Alignment explanation
Indices: 63998754--63998795 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
63998744 ATGTATCGGC
*
63998754 AAAAGTCGAAATGCTG
1 AAAAGTCGAAATGCCG
*
63998770 AAAAGTAGAAATGCCG
1 AAAAGTCGAAATGCCG
*
63998786 AAAAGCCGAA
1 AAAAGTCGAA
63998796 GGTTTGGCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.24, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:63999066 original size:29 final size:29
Alignment explanation
Indices: 63999007--63999121 Score: 101
Period size: 29 Copynumber: 4.0 Consensus size: 29
63998997 GTGAGCATGA
* ***
63999007 ATATGAATGTGA-CTGGGCCTAGCAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
63999035 ATATGAATGTGATTTGGTCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** *
63999064 ATAT-ACGGGTCATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* **
63999093 ATATGAATATGA-TTGGGATTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
63999121 A
1 A
63999122 GAAACAGGTA
Statistics
Matches: 69, Mismatches: 15, Indels: 6
0.77 0.17 0.07
Matches are distributed among these distances:
28 28 0.41
29 40 0.58
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:64000229 original size:17 final size:18
Alignment explanation
Indices: 64000197--64000230 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64000187 TTTAAGAAGG
64000197 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
64000215 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
64000231 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:64009303 original size:28 final size:28
Alignment explanation
Indices: 64009263--64009326 Score: 110
Period size: 28 Copynumber: 2.3 Consensus size: 28
64009253 TAGGAAGTAG
*
64009263 TTGGGCCTGATGGGCCATATGAACGAGA
1 TTGGGCCTGATGGGCCATATAAACGAGA
*
64009291 TTGGGCCTGATGGGCCATGTAAACGAGA
1 TTGGGCCTGATGGGCCATATAAACGAGA
64009319 TTGGGCCT
1 TTGGGCCT
64009327 AAAGGGGCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.23
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATAAACGAGA
Found at i:64009730 original size:27 final size:27
Alignment explanation
Indices: 64009643--64009730 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
64009633 TAATAAAGAT
*
64009643 AAATTATAGAAATACCCTTGTAGTGTA
1 AAATGATAGAAATACCCTTGTAGTGTA
* **
64009670 AAATTACCGAAATACCCTTGTAGTGTA
1 AAATGATAGAAATACCCTTGTAGTGTA
* * *
64009697 AAATGATAGACATACCCCTATAGTGTA
1 AAATGATAGAAATACCCTTGTAGTGTA
64009724 AAATGAT
1 AAATGAT
64009731 TGTTTTGCCC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (27 bp):
AAATGATAGAAATACCCTTGTAGTGTA
Found at i:64012263 original size:21 final size:20
Alignment explanation
Indices: 64012239--64012277 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
64012229 TATAATTTTT
64012239 AATGTTAGAT-GATGAATTTGG
1 AATGTT-GATAGAT-AATTTGG
64012260 AATGTTGATAGATAATTT
1 AATGTTGATAGATAATTT
64012278 AAATGATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (20 bp):
AATGTTGATAGATAATTTGG
Found at i:64012812 original size:40 final size:40
Alignment explanation
Indices: 64012755--64012892 Score: 168
Period size: 40 Copynumber: 3.5 Consensus size: 40
64012745 AATTATTCAA
* * *
64012755 TGATTGCACTTACGTGCCCCTATTTGTACTCTAGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCT
* * * * *
64012795 TGATTACACTTATGTGCCCTTGTTTGCACTTTGGTACCTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCT
* *
64012835 TGATTGCTCTTACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCT
* *
64012875 TGATTGTACTTATGTGCC
1 TGATTGCACTTACGTGCC
64012893 TCTGATTACA
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.14, C:0.26, G:0.18, T:0.41
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTTGGTACCCT
Found at i:64012824 original size:20 final size:20
Alignment explanation
Indices: 64012755--64012918 Score: 86
Period size: 20 Copynumber: 8.2 Consensus size: 20
64012745 AATTATTCAA
*
64012755 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTATGTGCCCC
* * *
64012775 T-ATTTGTACTCTA-GTACCCT
1 TGA-TTGCACT-TATGTGCCCC
* *
64012795 TGATTACACTTATGTGCCCT
1 TGATTGCACTTATGTGCCCC
* * **
64012815 TGTTTGCACTT-TGGTACCTT
1 TGATTGCACTTAT-GTGCCCC
* *
64012835 TGATTGCTCTTACGTGCCCC
1 TGATTGCACTTATGTGCCCC
* * *
64012855 TGTTTGTACTT-TGGTACCCC
1 TGATTGCACTTAT-GTGCCCC
* *
64012875 TGATTGTACTTATGTGCCTC
1 TGATTGCACTTATGTGCCCC
*
64012895 TGATTACACTTCA-GTGCCCC
1 TGATTGCACTT-ATGTGCCCC
64012915 TGAT
1 TGAT
64012919 CACACATCCG
Statistics
Matches: 108, Mismatches: 27, Indels: 18
0.71 0.18 0.12
Matches are distributed among these distances:
19 4 0.04
20 99 0.92
21 5 0.05
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (20 bp):
TGATTGCACTTATGTGCCCC
Found at i:64012905 original size:80 final size:80
Alignment explanation
Indices: 64012755--64012905 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
64012745 AATTATTCAA
* *
64012755 TGATTGCACTTACGTGCCCCTATTTGTACTCTAGTACCCTTGATTACACTTATGTGCCCTTGTTT
1 TGATTGCACTTACGTGCCCCTATTTGTACTCTAGTACCCCTGATTACACTTATGTGCCCTTGATT
*
64012820 GCACTTTGGTACCTT
66 ACACTTTGGTACCTT
* * * * **
64012835 TGATTGCTCTTACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGTACTTATGTG-CCTCTGAT
1 TGATTGCACTTACGTGCCCCTATTTGTACTCTAGTACCCCTGATTACACTTATGTGCCCT-TGAT
64012899 TACACTT
65 TACACTT
64012906 CAGTGCCCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.42
Consensus pattern (80 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTCTAGTACCCCTGATTACACTTATGTGCCCTTGATT
ACACTTTGGTACCTT
Found at i:64012931 original size:20 final size:20
Alignment explanation
Indices: 64012888--64012931 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
64012878 TTGTACTTAT
* * *
64012888 GTGCCTCTGATTACACTTCA
1 GTGCCCCTGATCACACATCA
*
64012908 GTGCCCCTGATCACACATCC
1 GTGCCCCTGATCACACATCA
64012928 GTGC
1 GTGC
64012932 TCTTGATTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.18, C:0.36, G:0.18, T:0.27
Consensus pattern (20 bp):
GTGCCCCTGATCACACATCA
Found at i:64015702 original size:49 final size:49
Alignment explanation
Indices: 64015633--64015932 Score: 519
Period size: 49 Copynumber: 6.1 Consensus size: 49
64015623 GTACATAATA
* * *
64015633 ATATATGTAATAAAGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
64015682 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
64015731 ATATATGTGATGAGGCCTAATGGCCGATGTGATGGATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
64015780 ATATATGTGATGAGGCCTAATGGCCGATGTGATGGATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
64015829 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * * *
64015878 ATATATGTGATGAGGCCTAATGGCCGACGTGTTAAATGTGAAAGTGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
64015927 ATATAT
1 ATATAT
64015933 ATGTGGTAAA
Statistics
Matches: 242, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 242 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:64016056 original size:37 final size:36
Alignment explanation
Indices: 64016001--64016087 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
64015991 AACTTGGAAA
64016001 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
64016039 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
64016076 TATGTCCGGGTA
1 TATGTCCGGGTA
64016088 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:64031871 original size:40 final size:40
Alignment explanation
Indices: 64031763--64032012 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
64031753 CGGGATTTAA
* * * * *
64031763 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64031803 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64031843 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64031883 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64031923 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64031963 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64032003 CCGGATATAT
1 CCGGATATAT
64032013 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64040047 original size:40 final size:40
Alignment explanation
Indices: 64039939--64040188 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
64039929 CGGGATTTAA
* * * * *
64039939 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64039979 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64040019 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64040059 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64040099 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64040139 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64040179 CCGGATATAT
1 CCGGATATAT
64040189 TTCCAATGTT
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64042593 original size:30 final size:30
Alignment explanation
Indices: 64042557--64042618 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
64042547 AATCAGAAGT
64042557 TTTGGCACTAAGTGTACGATTTAAACTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
*
64042587 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
64042617 TT
1 TT
64042619 CGACTACTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTACGATTTAAACTAGC
Found at i:64049749 original size:40 final size:40
Alignment explanation
Indices: 64049704--64049870 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64049694 CGGAATATAA
64049704 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64049744 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64049784 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
64049824 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64049863 CCGGATAT
1 CCGGATAT
64049871 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64057759 original size:40 final size:40
Alignment explanation
Indices: 64057714--64057881 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
64057704 CGGAATATAA
64057714 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
64057754 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
64057794 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
64057834 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
64057874 CCGGATAT
1 CCGGATAT
64057882 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:64060991 original size:30 final size:30
Alignment explanation
Indices: 64060955--64061016 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
64060945 AATTGGAAGT
64060955 TTTGGCACTAAGTGTACGATTTAAACTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
* *
64060985 TTTGGCACTAAGTGTGCGATTTAAGCTAGC
1 TTTGGCACTAAGTGTACGATTTAAACTAGC
64061015 TT
1 TT
64061017 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (30 bp):
TTTGGCACTAAGTGTACGATTTAAACTAGC
Found at i:64065479 original size:40 final size:40
Alignment explanation
Indices: 64065401--64065584 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
64065391 ACCCAAGTAT
* *
64065401 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* **
64065440 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
64065480 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
64065520 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
*
64065563 CTTCGGGACTTAGCCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
64065585 CATCTGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 12 0.09
40 85 0.66
41 1 0.01
43 30 0.23
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:64076216 original size:29 final size:29
Alignment explanation
Indices: 64076075--64076204 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
64076065 GACAAGATTG
* * * *
64076075 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
64076105 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
64076133 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
64076162 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
64076191 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64076205 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:64087306 original size:12 final size:14
Alignment explanation
Indices: 64087291--64087322 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
64087281 GTGAGAACAC
64087291 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
64087303 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
64087317 ATGTGT
1 ATGTGT
64087323 TTAAGACGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:64087407 original size:50 final size:50
Alignment explanation
Indices: 64087288--64087581 Score: 257
Period size: 50 Copynumber: 5.8 Consensus size: 50
64087278 GTTGTGAGAA
* * ** *
64087288 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACGGTT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGT
*
64087340 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * *
64087390 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * * * **** *
64087441 CACGTGTGTAGTGCTAAGTGCAAGCTACTACGTGTATTTTATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * ** *
64087491 CATGTGTGTAGTACTAAGTACAGACTACTACATGCACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * *
64087541 TGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
64087582 GAGCTTCGGT
Statistics
Matches: 192, Mismatches: 48, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
49 3 0.02
50 120 0.62
51 38 0.20
52 31 0.16
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:64087488 original size:101 final size:101
Alignment explanation
Indices: 64087339--64087520 Score: 247
Period size: 101 Copynumber: 1.8 Consensus size: 101
64087329 CGGTTTTAGG
* * * *
64087339 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
* *
64087404 TAAGTGCAGGCTACTATGCGTACCTGATAGCTTCGA
66 TAAGTACAGACTACTATGCGTACCTGATAGCTTCGA
* **** **
64087440 TCACGTGTGTAGTGCTAAGTGCAAGCTACTACGTGTATTTTATGGTTAGGTCATGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
64087505 TAAGTACAGACTACTA
66 TAAGTACAGACTACTA
64087521 CATGCACCAG
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
101 68 1.00
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTACAGACTACTATGCGTACCTGATAGCTTCGA
Found at i:64097602 original size:47 final size:47
Alignment explanation
Indices: 64097549--64097740 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
64097539 TTAGGATTTT
* * *
64097549 AATGTGACGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
64097596 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
64097643 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGACC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
64097690 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
64097737 AATG
1 AATG
64097741 CGAAATGTGT
Statistics
Matches: 134, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:64097850 original size:46 final size:46
Alignment explanation
Indices: 64097714--64097850 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
64097704 GAACATGTAT
* *
64097714 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
64097760 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTATATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
64097806 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
64097851 TGTATATATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:64110095 original size:23 final size:23
Alignment explanation
Indices: 64110044--64110116 Score: 128
Period size: 23 Copynumber: 3.1 Consensus size: 23
64110034 CCTAGCCTCT
*
64110044 TTTAATAACTGGGGCAAAAGCCCC
1 TTTAATAACTGGGGCATAAG-CCC
64110068 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64110091 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64110114 TTT
1 TTT
64110117 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 29 0.60
24 19 0.40
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:64110192 original size:20 final size:20
Alignment explanation
Indices: 64110165--64110211 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
64110155 TTATGAATAC
64110165 ACCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
*
64110185 ATCATGTGCATATCATACAT
1 ACCATGTGCATATCATACAT
64110205 ACCATGT
1 ACCATGT
64110212 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (20 bp):
ACCATGTGCATATCATACAT
Found at i:64113638 original size:46 final size:46
Alignment explanation
Indices: 64113571--64113746 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
64113561 TGTAACCCGC
* *
64113571 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
64113617 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* * *
64113667 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
64113710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64113747 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 61 0.56
47 26 0.24
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:64113686 original size:93 final size:93
Alignment explanation
Indices: 64113578--64113749 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64113568 CGCCCATAAG
* * *
64113578 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64113643 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
*
64113671 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
64113736 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
64113750 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:64114976 original size:29 final size:29
Alignment explanation
Indices: 64114913--64115015 Score: 86
Period size: 29 Copynumber: 3.6 Consensus size: 29
64114903 GTGACGAGAT
* * *
64114913 TGGCACTGAGTGTGCGAGATTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
** *
64114942 CAGCACTAAGTGTGCGAG-TTGGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATC-ATA
* *
64114971 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
64115000 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64115016 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
28 3 0.05
29 52 0.90
30 3 0.05
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:64117125 original size:20 final size:19
Alignment explanation
Indices: 64117086--64117127 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
64117076 AACAATCGGC
64117086 AAGAGGAGAAAGAAAAGAG
1 AAGAGGAGAAAGAAAAGAG
* *
64117105 AAGAGGGGAAGAGATAAGAG
1 AAGAGGAGAA-AGAAAAGAG
64117125 AAG
1 AAG
64117128 GAAAGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.40, T:0.02
Consensus pattern (19 bp):
AAGAGGAGAAAGAAAAGAG
Found at i:64118230 original size:19 final size:19
Alignment explanation
Indices: 64118206--64118248 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
64118196 ATACTTACAG
*
64118206 TAATTTTTTCTAATAATAA
1 TAATTTTATCTAATAATAA
* *
64118225 TAATTTTATCTCATAATAC
1 TAATTTTATCTAATAATAA
64118244 TAATT
1 TAATT
64118249 AAAATTTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATTTTATCTAATAATAA
Found at i:64120498 original size:24 final size:24
Alignment explanation
Indices: 64120466--64120569 Score: 176
Period size: 23 Copynumber: 4.4 Consensus size: 24
64120456 ATGGAGGCCT
*
64120466 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
64120491 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
64120515 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
64120538 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
64120561 AGCCCTTTT
1 AGCCCTTTT
64120570 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
23 46 0.60
24 27 0.35
25 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:64120647 original size:19 final size:20
Alignment explanation
Indices: 64120619--64120682 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
64120609 ATGAATACAC
64120619 CATGTGCATATCATACATAT
1 CATGTGCATATCATACATAT
*
64120639 CAT-TGCATATCATACATGT
1 CATGTGCATATCATACATAT
*
64120658 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
64120678 CATGT
1 CATGT
64120683 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 18 0.45
20 22 0.55
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:64127679 original size:27 final size:27
Alignment explanation
Indices: 64127648--64127702 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
64127638 ACTCTAAGAG
64127648 TACAAGTCTATAATCAAGAATGAACAT
1 TACAAGTCTATAATCAAGAATGAACAT
64127675 TACAAGTCTATAATCAAGAATGAACAT
1 TACAAGTCTATAATCAAGAATGAACAT
64127702 T
1 T
64127703 CTTGTCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (27 bp):
TACAAGTCTATAATCAAGAATGAACAT
Found at i:64132054 original size:28 final size:28
Alignment explanation
Indices: 64131989--64132089 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64131979 ATAGTGAATC
*
64131989 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
64132018 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64132046 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
64132076 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64132090 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64139977 original size:28 final size:28
Alignment explanation
Indices: 64139912--64140012 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64139902 ATAGTGAATC
*
64139912 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
64139941 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64139969 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
64139999 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64140013 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:64141496 original size:30 final size:30
Alignment explanation
Indices: 64141439--64141541 Score: 147
Period size: 29 Copynumber: 3.5 Consensus size: 30
64141429 TGACGAGATC
64141439 GGCACTAAGTGTGCGTGCTGG-AAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAATATAT
64141468 GGCACTAAGTGTGCGTGCTGGAAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAATATAT
** *
64141498 GGCACTAAGTGTGCAAGCTGGAAAA-ATAC
1 GGCACTAAGTGTGCGTGCTGGAAAATATAT
**
64141527 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
64141542 AGCTCGGAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
29 36 0.54
30 31 0.46
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (30 bp):
GGCACTAAGTGTGCGTGCTGGAAAATATAT
Found at i:64149186 original size:7 final size:7
Alignment explanation
Indices: 64149174--64149201 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
64149164 CCGTAGCCCT
64149174 TTTCATA
1 TTTCATA
64149181 TTTCATA
1 TTTCATA
64149188 TTTCATA
1 TTTCATA
64149195 TTTCATA
1 TTTCATA
64149202 ATACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:64149226 original size:31 final size:31
Alignment explanation
Indices: 64149188--64149282 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
64149178 ATATTTCATA
*
64149188 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64149219 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64149250 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64149281 TT
1 TT
64149283 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:64149525 original size:24 final size:24
Alignment explanation
Indices: 64149474--64149640 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
64149464 GCTTTATCAT
* *
64149474 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
64149499 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
64149523 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
64149546 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64149570 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64149594 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
64149618 ATAGCTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64149641 TCACTTCCTC
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:64149574 original size:71 final size:71
Alignment explanation
Indices: 64149473--64149640 Score: 248
Period size: 71 Copynumber: 2.3 Consensus size: 71
64149463 TGCTTTATCA
*
64149473 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64149537 AGCCCTTT
64 AGCCCTTT
* * **
64149545 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
64149610 CCCTTT
66 CCCTTT
*
64149616 TGATAGCTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
64149641 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
71 53 0.60
72 35 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:64149716 original size:20 final size:20
Alignment explanation
Indices: 64149691--64149750 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
64149681 TATGATTACC
64149691 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
64149711 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
64149731 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64149751 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64150996 original size:27 final size:27
Alignment explanation
Indices: 64150966--64151030 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
64150956 GGGCATATTC
64150966 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
* *
64150993 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
64151020 GTCTTTTTACC
1 GTCATTTTACC
64151031 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:64151186 original size:27 final size:26
Alignment explanation
Indices: 64151146--64151229 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 26
64151136 AAAAAGTCAA
64151146 GGGTATTTCT-GTAACTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTGTAAATCAG
*
64151173 GGGTATTTTGGTAATTT-TACAAAT-TG
1 GGGTATTTTGGTAATTTGT--AAATCAG
*
64151199 AGGGTATTTCGGTAATTCTGTAAATCGAG
1 -GGGTATTTTGGTAATT-TGTAAATC-AG
64151228 GG
1 GG
64151230 TAAAACGGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
25 1 0.02
26 5 0.11
27 35 0.76
28 3 0.07
29 2 0.04
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTGTAAATCAG
Found at i:64151221 original size:54 final size:52
Alignment explanation
Indices: 64151145--64151650 Score: 185
Period size: 54 Copynumber: 9.4 Consensus size: 52
64151135 TAAAAAGTCA
* *
64151145 AGGGTATTTCTGTAACTTTGTAAATC-AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAA-TTT-TAAATCGA-GGGTAATTTGGTAATTTTACAAATTG
*** * ** * *
64151199 AGGGTATTTCGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCG
1 AGGGTATTTCGGTAATT-T-TAAATCGAGGGTAATTTGGTAATTTTACAAATTG
*** * *** * **
64151253 AGGGTAAAACGATAATTATGTAAATC-AGGGGTAAAACGGTAATTATGTAAATTG
1 AGGGTATTTCGGTAATT-T-TAAATCGA-GGGTAATTTGGTAATTTTACAAATTG
* *** ** * * ** *
64151307 TGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTG
1 AGGGTATTTCGGTAATT-T-TAAATCGAGGGTAATTTGGTAATTTTACAAATTG
*** * *** *
64151361 AGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAACGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATT-T-TAAATCGAGGGTAATTTGGTAATTTTACAAATTG
*** * *
64151415 AGGGTAAAACGGTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTTG
1 AGGGTATTTCGGTAATT-T-TAAATCGAGGGTAATTTGGTAATTTTACAAATTG
** * * *
64151469 AGGGTATTTCAATAATTTTACAGGTCGAGGGT-ATTTCAGTAATTTCACAAATT-
1 AGGGTATTTCGGTAATTTTA-A-ATCGAGGGTAATTT-GGTAATTTTACAAATTG
* * * * * *
64151522 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACT-
1 A-GGGTATTTCGGTAATTTTA-AATCGA-GGGTAATTTGGTAATTTTACAAATTG
* * * * * ***
64151576 AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTA-AATCGA-GGGTAATTTGGTAATTTTACAAATTG
**
64151631 AGGGTATTTTAGTAATTTTA
1 AGGGTATTTCGGTAATTTTA
64151651 CAAAGCAAGG
Statistics
Matches: 374, Mismatches: 67, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
52 2 0.01
53 11 0.03
54 355 0.95
55 6 0.02
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (52 bp):
AGGGTATTTCGGTAATTTTAAATCGAGGGTAATTTGGTAATTTTACAAATTG
Found at i:64151230 original size:27 final size:27
Alignment explanation
Indices: 64151208--64151447 Score: 313
Period size: 27 Copynumber: 8.9 Consensus size: 27
64151198 GAGGGTATTT
64151208 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
64151235 CGGTAATTCTGTAAGTCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* *
64151262 CGATAATTATGTAAATC-AGGGGTAAAA
1 CGGTAATTCTGTAAATCGA-GGGTAAAA
* * *
64151289 CGGTAATTATGTAAATTGTGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
64151316 CGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
**
64151343 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CGGTAATTCTGTAAATC-GAGGGTAAAA
* *
64151370 CGGTAATTCTATAAATTGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
* **
64151397 CGGTAATTTTACAAATCGAGGGTAAAA
1 CGGTAATTCTGTAAATCGAGGGTAAAA
*
64151424 CGGTAATTCTATAAATCGAGGGTA
1 CGGTAATTCTGTAAATCGAGGGTA
64151448 CTTTGGTAAT
Statistics
Matches: 186, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 184 0.99
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTGTAAATCGAGGGTAAAA
Done.