Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 204 of 318
Found at i:64151582 original size:81 final size:81
Alignment explanation
Indices: 64151443--64151654 Score: 241
Period size: 81 Copynumber: 2.6 Consensus size: 81
64151433 TATAAATCGA
* * * * ** *
64151443 GGGTACTTTGGTAATTTTAC-AAGTTGAGGGTATTTCAATAATTTTAC-AGGTCGAGGGTATTTC
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTACAAACTAGAGGGTATTTC
*
64151506 AGTAATTTCACAAATTAG
64 AGTAATTTCACAAACTAG
**
64151524 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG-GGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACAAACTAGAGGGTATTTCA
*
64151588 GTAATTTTACAAACTAG
65 GTAATTTCACAAACTAG
* * *
64151605 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTACAAA
64151655 GCAAGGTATT
Statistics
Matches: 113, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
80 1 0.01
81 105 0.93
82 7 0.06
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAAACTAGAGGGTATTTCAG
TAATTTCACAAACTAG
Found at i:64151651 original size:54 final size:54
Alignment explanation
Indices: 64151524--64151693 Score: 229
Period size: 54 Copynumber: 3.2 Consensus size: 54
64151514 CACAAATTAG
* * * * *
64151524 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
*
64151578 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
* *
64151632 GGGTATTTTAGTAATTTTACAAAGC-A-AGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACCAA
*
64151685 -AGTATTTTA
1 GGGTATTTTA
64151694 AACATGGATA
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
52 8 0.07
53 25 0.23
54 73 0.68
55 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.41
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCAA
Found at i:64151659 original size:27 final size:26
Alignment explanation
Indices: 64151442--64151675 Score: 200
Period size: 27 Copynumber: 8.7 Consensus size: 26
64151432 CTATAAATCG
* ***
64151442 AGGGTACTTTGGTAATTTTACAAGTTG
1 AGGGTATTTTGGTAATTTTACAA-ACA
*** ** *
64151469 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGGTAATTTTACA-AACA
** * *
64151496 AGGGTATTTCAGTAATTTCACAAATTA
1 AGGGTATTTTGGTAATTTTACAAA-CA
*
64151523 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAAC-A
* *
64151550 GGGGTATTTTGATAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAAC-A
*
64151577 GGGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAAC-A
* *
64151604 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAA-CA
*
64151631 AGGGTATTTTAGTAATTTTACAAAGCA
1 AGGGTATTTTGGTAATTTTACAAA-CA
64151658 A-GGTATTTTGGTAATTTT
1 AGGGTATTTTGGTAATTTT
64151676 GTAAACCAAA
Statistics
Matches: 178, Mismatches: 25, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
26 16 0.09
27 161 0.90
28 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAACA
Found at i:64151689 original size:26 final size:26
Alignment explanation
Indices: 64151525--64151692 Score: 183
Period size: 27 Copynumber: 6.3 Consensus size: 26
64151515 ACAAATTAGG
* *
64151525 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
64151552 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
64151579 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
64151606 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* *
64151632 GGGTATTTTAGTAATTTTACAAAGCAA
1 -GGTATTTTGGTAATTTTACAAACCAA
**
64151659 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
64151685 AGTATTTT
1 GGTATTTT
64151693 AAACATGGAT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 29 0.23
27 98 0.77
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:64153604 original size:17 final size:18
Alignment explanation
Indices: 64153577--64153610 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64153567 AATTAAATAT
64153577 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
64153595 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
64153611 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:64157961 original size:49 final size:49
Alignment explanation
Indices: 64157901--64158063 Score: 209
Period size: 49 Copynumber: 3.5 Consensus size: 49
64157891 TACATATGTG
* * *
64157901 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64157950 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64157993 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64158039 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
64158064 AAAATATATG
Statistics
Matches: 99, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
40 33 0.33
41 2 0.02
42 1 0.01
43 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 2 0.02
49 52 0.53
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:64157999 original size:40 final size:40
Alignment explanation
Indices: 64157955--64158036 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
64157945 GTATATGTGA
64157955 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
64157995 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
64158035 TA
1 TA
64158037 TATGTGATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (40 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:64158209 original size:37 final size:37
Alignment explanation
Indices: 64158159--64158243 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
64158149 GGAATATGTT
*
64158159 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
64158196 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
64158233 CCGGGTAAGAC
1 CCGGGTAAGAC
64158244 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:64160119 original size:40 final size:40
Alignment explanation
Indices: 64160064--64160308 Score: 355
Period size: 40 Copynumber: 6.1 Consensus size: 40
64160054 GAGAATTGAG
*
64160064 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
64160104 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
*
64160144 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
64160184 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
64160224 AGTGATGTATCCGGGCAAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
* * * *
64160264 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
64160304 AGTGA
1 AGTGA
64160309 CGTGTATTCG
Statistics
Matches: 196, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 196 1.00
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGACTAAGTCCCGAAGAGCATTCATGCT
Found at i:64160524 original size:29 final size:29
Alignment explanation
Indices: 64160482--64160674 Score: 341
Period size: 29 Copynumber: 6.7 Consensus size: 29
64160472 CGAATGAATA
64160482 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
64160511 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
64160540 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
64160569 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
64160598 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
* *
64160627 GAGGCACTACGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
64160656 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
64160675 TTTTTCAACA
Statistics
Matches: 158, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 158 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:64164110 original size:49 final size:49
Alignment explanation
Indices: 64164050--64164212 Score: 209
Period size: 49 Copynumber: 3.5 Consensus size: 49
64164040 TACATATGTG
* * *
64164050 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64164099 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAA--G--TG--TA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64164142 --TG-TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
*
64164188 TGTGATAAGGCCTAATGGCTAATGT
1 TGTGATAAGGCCTAATGGCCAATGT
64164213 AAAATATATG
Statistics
Matches: 99, Mismatches: 6, Indels: 18
0.80 0.05 0.15
Matches are distributed among these distances:
40 33 0.33
41 2 0.02
42 1 0.01
43 2 0.02
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 2 0.02
49 52 0.53
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:64164148 original size:40 final size:40
Alignment explanation
Indices: 64164104--64164185 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
64164094 GTATATGTGA
64164104 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
64164144 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
1 TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
64164184 TA
1 TA
64164186 TATGTGATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.28, C:0.10, G:0.34, T:0.28
Consensus pattern (40 bp):
TAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATG
Found at i:64164358 original size:37 final size:37
Alignment explanation
Indices: 64164308--64164392 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
64164298 GGAATATGTT
*
64164308 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
64164345 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
64164382 CCGGGTAAGAC
1 CCGGGTAAGAC
64164393 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:64169437 original size:43 final size:43
Alignment explanation
Indices: 64169274--64169430 Score: 228
Period size: 43 Copynumber: 3.7 Consensus size: 43
64169264 TCAATTAACG
* *
64169274 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA-TATA-A
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACA
*
64169315 TGATGCCAATGTCCCATACATGGTCTTACACATAATCACAATACA
1 --ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACA
*
64169360 ATGCCAATGTCCCATACATGGTCTTACACATAATCACAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACA
* *
64169403 ATACCAATGTCCCAGACATTGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
64169431 TGTAATCTCA
Statistics
Matches: 106, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
43 102 0.96
44 3 0.03
45 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATACA
Found at i:64170817 original size:17 final size:19
Alignment explanation
Indices: 64170775--64170818 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64170765 ATGAAATTTT
*
64170775 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64170794 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64170812 AA-TATTA
1 AATTATTA
64170819 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64170849 original size:12 final size:12
Alignment explanation
Indices: 64170832--64170856 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64170822 TATGTATGTT
64170832 TGAAAATTTTTA
1 TGAAAATTTTTA
64170844 TGAAAATTTTTA
1 TGAAAATTTTTA
64170856 T
1 T
64170857 TATTTACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:64172644 original size:28 final size:28
Alignment explanation
Indices: 64172612--64172666 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
64172602 GCGTAGATCA
64172612 CGAAATTACCCCTAAAGAGCAAAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAT
64172640 CGAAATTACCCCTAAAGAGCAAAATTA
1 CGAAATTACCCCTAAAGAGCAAAATTA
64172667 CTGATATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAT
Found at i:64179493 original size:20 final size:20
Alignment explanation
Indices: 64179448--64179494 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
64179438 GATGCAATAA
64179448 AGAGGCACCAAAGTGCAAAC
1 AGAGGCACCAAAGTGCAAAC
* *
64179468 ACAGGCA-CAAATGTGCAAGC
1 AGAGGCACCAAA-GTGCAAAC
64179488 AGAGGCA
1 AGAGGCA
64179495 TCGTAGTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.43, C:0.23, G:0.28, T:0.06
Consensus pattern (20 bp):
AGAGGCACCAAAGTGCAAAC
Found at i:64181341 original size:40 final size:39
Alignment explanation
Indices: 64181181--64181343 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
64181171 TGTGTATGAA
*
64181181 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
64181220 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
64181259 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64181298 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
64181338 TGTGCG
1 TGTGCG
64181344 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:64181359 original size:40 final size:39
Alignment explanation
Indices: 64181181--64181374 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
64181171 TGTGTATGAA
* *
64181181 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
64181220 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64181259 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
64181298 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
64181338 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
64181375 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:64194144 original size:26 final size:26
Alignment explanation
Indices: 64194070--64194147 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
64194060 CTAGTGGCTA
64194070 CATCCGGGCTAAGACCCGAAGGCATT
1 CATCCGGGCTAAGACCCGAAGGCATT
* * **
64194096 CGTGCAGTTCGTAAGA-CCG-AGGCATT
1 CAT-CCGGGC-TAAGACCCGAAGGCATT
64194122 CATCCGGGCTAAGACCCGAAGGCATT
1 CATCCGGGCTAAGACCCGAAGGCATT
64194148 GTGTAGTAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
24 5 0.12
25 6 0.15
26 18 0.45
27 6 0.15
28 5 0.12
ACGTcount: A:0.26, C:0.28, G:0.28, T:0.18
Consensus pattern (26 bp):
CATCCGGGCTAAGACCCGAAGGCATT
Found at i:64202143 original size:41 final size:37
Alignment explanation
Indices: 64202088--64202228 Score: 160
Period size: 40 Copynumber: 3.6 Consensus size: 37
64202078 CGAATGGTAT
* *
64202088 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGG-TAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
64202128 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGT-AAGTCCCGAAGGCATTTGTGCGAG-TA-CTAAA
64202169 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTA-TAAA
1 CCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
64202206 CCGGGTAAGTCCCGAAGGC-TTTG
1 CCGGGTAAGTCCCGAAGGCATTTG
64202229 AGAGAGTCGC
Statistics
Matches: 90, Mismatches: 6, Indels: 14
0.82 0.05 0.13
Matches are distributed among these distances:
35 4 0.04
36 14 0.16
37 8 0.09
39 2 0.02
40 32 0.36
41 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (37 bp):
CCGGGTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:64214603 original size:46 final size:46
Alignment explanation
Indices: 64214538--64214674 Score: 161
Period size: 46 Copynumber: 2.9 Consensus size: 46
64214528 TACACTGACA
*
64214538 CATCTCATA-GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-T
1 CATCTCA-AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
*
64214583 ACATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
1 -CATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
* * * * *
64214630 CGTCTCAATGCCAATGCCATGTCCCATACATGGTCTTACAATAGC
1 CATCTCAAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC
64214675 ACACAAATGA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
45 1 0.01
46 52 0.66
47 14 0.18
48 12 0.15
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (46 bp):
CATCTCAAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT
Found at i:64218048 original size:40 final size:39
Alignment explanation
Indices: 64218003--64218132 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
64217993 CGGAATACAA
64218003 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
64218043 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
64218083 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
64218123 CCGGATATAA
1 CCGGATATAA
64218133 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:64226109 original size:40 final size:39
Alignment explanation
Indices: 64226064--64226193 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
64226054 CGGAATACAA
64226064 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
64226104 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
64226144 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
64226184 CCGGATATAA
1 CCGGATATAA
64226194 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:64228971 original size:66 final size:68
Alignment explanation
Indices: 64228896--64229082 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
64228886 TAGTACCACT
*
64228896 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
64228958 CACG
65 CACG
64228962 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
64229027 ATCACG
63 ATCACG
64229033 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
64229083 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:64229007 original size:71 final size:71
Alignment explanation
Indices: 64228919--64229082 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64228909 CGATTTGTCT
64228919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64228984 CTTTCA
66 CTTTCA
64228990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
64229055 CTTTCA
66 CTTTCA
64229061 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
64229083 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:64229120 original size:71 final size:70
Alignment explanation
Indices: 64228919--64229116 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64228909 CGATTTGTCT
* * *
64228919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64228984 CTTTCA
65 CTTTCA
* * *
64228990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
64229055 CTTTCA
65 CTTTCA
* *
64229061 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
64229117 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:64230956 original size:39 final size:40
Alignment explanation
Indices: 64230805--64231034 Score: 309
Period size: 40 Copynumber: 5.8 Consensus size: 40
64230795 CGAATGGTGT
* * * * * *
64230805 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
64230846 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
64230886 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
64230926 CCGGGTTAAGT-CCGAAGGCATTTGTACGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
64230965 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
64231005 CCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGA
64231035 ATCACTATAA
Statistics
Matches: 169, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 38 0.22
40 107 0.63
41 24 0.14
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:64230963 original size:79 final size:80
Alignment explanation
Indices: 64230805--64231030 Score: 328
Period size: 79 Copynumber: 2.8 Consensus size: 80
64230795 CGAATGGTGT
* * * * *
64230805 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTT
*
64230870 GTGCGAGTTACCAAAA
65 GTACGAGTTACCAAAA
* * *
64230886 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGT-CCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTG
64230950 TACGAGTTACCAAAA
66 TACGAGTTACCAAAA
* * *
64230965 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTG
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTG
64231030 T
66 T
64231031 GCGAATCACT
Statistics
Matches: 129, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 73 0.57
80 30 0.23
81 26 0.20
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATTTG
TACGAGTTACCAAAA
Found at i:64231049 original size:40 final size:40
Alignment explanation
Indices: 64230805--64231062 Score: 297
Period size: 40 Copynumber: 6.5 Consensus size: 40
64230795 CGAATGGTGT
* * * * *
64230805 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
64230846 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
64230886 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
64230926 CCGGGTTAAGT-CCGAAGGCATTTGTACGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
64230965 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * *
64231005 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
64231045 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
64231063 ACAATCGAGC
Statistics
Matches: 192, Mismatches: 21, Indels: 9
0.86 0.09 0.04
Matches are distributed among these distances:
39 40 0.21
40 127 0.66
41 25 0.13
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:64231092 original size:119 final size:119
Alignment explanation
Indices: 64230846--64231077 Score: 261
Period size: 119 Copynumber: 1.9 Consensus size: 119
64230836 GTGACTAAAT
* * * * *
64230846 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGTTAAATCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTG
* * * * * * *
64230911 TGCGAGTTACCAAAACCGGGTTAAGTCCGAAGGCATTTGTACGAGTTACCAAAA
66 TGCGAATCACCAAAACCGGGTCAAGTCCGAAGACAATCGTACGAGTCACCAAAA
* * * *
64230965 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATTG
1 CCGGGTTAAATCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTG
* *
64231030 TGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATCG-AGCGAGTC
66 TGCGAATCACCAAAACCGGGTCAA-GT-CCGAAGACAATCGTA-CGAGTC
64231078 GCTATATCCG
Statistics
Matches: 93, Mismatches: 17, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
118 2 0.02
119 76 0.82
120 15 0.16
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (119 bp):
CCGGGTTAAATCCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAATTG
TGCGAATCACCAAAACCGGGTCAAGTCCGAAGACAATCGTACGAGTCACCAAAA
Found at i:64231100 original size:119 final size:118
Alignment explanation
Indices: 64230842--64231102 Score: 256
Period size: 119 Copynumber: 2.2 Consensus size: 118
64230832 CTAAGTGACT
* * * *
64230842 AAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGTTAAATT-CCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCA
* * * * * * * *
64230907 TTTGTGCGAGTTACCAAAACCGGGTTAAGTCCGAAGGCATTTGTACGAGTTACC
65 ATTGTGCGAATCACCAAAACCGGGTCAAGTCCGAAGACAATCGTACGAGTCACC
* * * * * *
64230961 AAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAATTCCCGAAGGCA
1 AAATCC-GGTTAAATTCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCA
* * * *
64231026 ATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAGACAATCG-AGCGAGTCGCT
65 ATTGTGCGAATCACCAAAACCGGGTCAA-GT-CCGAAGACAATCGTA-CGAGTCACC
*
64231081 ATATCCGGTTAAATTCCGAAGG
1 AAATCCGGTTAAATTCCGAAGG
64231103 TACATGATTC
Statistics
Matches: 112, Mismatches: 26, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
118 2 0.02
119 85 0.76
120 25 0.22
ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22
Consensus pattern (118 bp):
AAATCCGGTTAAATTCCGAAGGCATTCGTGCGAGTTACCAAAACCGGGCTAAGTCCCGAAGGCAA
TTGTGCGAATCACCAAAACCGGGTCAAGTCCGAAGACAATCGTACGAGTCACC
Found at i:64239047 original size:40 final size:40
Alignment explanation
Indices: 64238950--64239141 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
64238940 TCAAATGGTG
* * * * *
64238950 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAA
* *
64238991 TCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAGAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AA
64239032 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* * * * *
64239071 ACCGGGTTAAGTCCCGAAGGCATTCGCGCAAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
* * *
64239111 TCCGGGCTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
64239142 ATCACTATAA
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 100 0.78
41 27 0.21
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAA
Found at i:64239116 original size:80 final size:81
Alignment explanation
Indices: 64238950--64239169 Score: 239
Period size: 80 Copynumber: 2.7 Consensus size: 81
64238940 TCAAATGGTG
* * * * *
64238950 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATT
* * *
64239015 TGTGCGAGTTACCAGAA
65 CGCGCAAGTTACCAGAA
* * *
64239032 -CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
*
64239096 GCGCAAGTTACTA-AA
66 GCGCAAGTTACCAGAA
* * * * * *
64239111 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAA-GTCCCGAAG
64239170 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
79 4 0.03
80 86 0.74
81 26 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAACCGGGTCAAGTCCCGAAGGCATTC
GCGCAAGTTACCAGAA
Found at i:64239156 original size:40 final size:39
Alignment explanation
Indices: 64238951--64239174 Score: 177
Period size: 40 Copynumber: 5.6 Consensus size: 39
64238941 CAAATGGTGT
** * *
64238951 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAA-TTACTAAA
* * * *
64238991 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAGAA
1 -CCGGGCT-AAGTCCCGAAGGCAATTGTGCGAATTACTA-AA
* * * *
64239032 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTA-CTAAA
* *
64239072 CCGGGTTAAGTCCCGAAGGC-ATT-CGCGCAAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCG-AA-TTACTAAA
* *
64239111 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTA-AA
*
64239152 CCGGGC-AATGTCCCGAAGACAAT
1 CCGGGCTAA-GTCCCGAAGGCAAT
64239175 CGAGCGAGTC
Statistics
Matches: 154, Mismatches: 18, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
38 3 0.02
39 9 0.06
40 102 0.66
41 37 0.24
42 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAATTACTAAA
Found at i:64239165 original size:120 final size:121
Alignment explanation
Indices: 64238951--64239169 Score: 300
Period size: 120 Copynumber: 1.8 Consensus size: 121
64238941 CAAATGGTGT
* * * *
64238951 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* * *
64239016 GTGCGAGTTACCAGAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAGAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
64239072 CCGGGTTAAGTCCCGAAGGCATTCGCGC-AAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGCGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
* *
64239135 TGTGCGAATCACTATAACCGGG-CAATGTCCCGAAG
65 TGTGCGAATCACCAGAACCGGGTCAA-GTCCCGAAG
64239170 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
119 3 0.04
120 58 0.68
121 24 0.28
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.22
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGCGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAGAACCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:64239190 original size:40 final size:40
Alignment explanation
Indices: 64239112--64239195 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64239102 GTTACTAAAT
* * *
64239112 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64239152 CCGGGC-AATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64239192 CCGG
1 CCGG
64239196 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 3 0.08
40 34 0.92
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.19
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64246905 original size:40 final size:39
Alignment explanation
Indices: 64246861--64247003 Score: 187
Period size: 39 Copynumber: 3.6 Consensus size: 39
64246851 GTTCAAAACA
* * ** * *
64246861 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
64246901 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
64246941 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
64246980 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
64247004 CTCGAACATT
Statistics
Matches: 92, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 52 0.57
40 40 0.43
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:64254952 original size:40 final size:39
Alignment explanation
Indices: 64254908--64255089 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
64254898 GTTCAAAACA
* * ** * *
64254908 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
64254948 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
64254988 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
64255027 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
64255066 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
64255090 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:64255019 original size:39 final size:39
Alignment explanation
Indices: 64254938--64255090 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
64254928 TATGGTAACC
* *
64254938 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
64254978 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
64255017 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
64255056 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
64255091 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:64257054 original size:46 final size:46
Alignment explanation
Indices: 64256987--64257158 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
64256977 AACCCGCCCC
*
64256987 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64257033 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
64257081 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
64257126 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
64257159 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 60 0.56
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:64257616 original size:30 final size:30
Alignment explanation
Indices: 64257593--64257671 Score: 158
Period size: 30 Copynumber: 2.6 Consensus size: 30
64257583 ACTTTGGAAA
64257593 AATTACACTTTTGCCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
64257623 AATTACACTTTTGCCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
64257653 AATTACACTTTTGCCCCTA
1 AATTACACTTTTGCCCCTA
64257672 GGCTCTGGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.27, C:0.28, G:0.06, T:0.39
Consensus pattern (30 bp):
AATTACACTTTTGCCCCTAAACTTTTGCAT
Found at i:64257618 original size:14 final size:14
Alignment explanation
Indices: 64257599--64257650 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
64257589 GAAAAATTAC
64257599 ACTTTTGCCCCTAA
1 ACTTTTGCCCCTAA
*** *
64257613 ACTTTTGCATAATTAC
1 ACTTTTGC--CCCTAA
64257629 ACTTTTGCCCCTAA
1 ACTTTTGCCCCTAA
64257643 ACTTTTGC
1 ACTTTTGC
64257651 ATAATTACAC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 18 0.64
16 10 0.36
ACGTcount: A:0.23, C:0.29, G:0.08, T:0.40
Consensus pattern (14 bp):
ACTTTTGCCCCTAA
Found at i:64257634 original size:16 final size:16
Alignment explanation
Indices: 64257613--64257666 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
64257603 TTGCCCCTAA
64257613 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
*** *
64257629 ACTTTTGC--CCCTAA
1 ACTTTTGCATAATTAC
64257643 ACTTTTGCATAATTAC
1 ACTTTTGCATAATTAC
64257659 ACTTTTGC
1 ACTTTTGC
64257667 CCCTAGGCTC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
14 10 0.36
16 18 0.64
ACGTcount: A:0.26, C:0.24, G:0.07, T:0.43
Consensus pattern (16 bp):
ACTTTTGCATAATTAC
Found at i:64263634 original size:48 final size:47
Alignment explanation
Indices: 64263521--64263738 Score: 209
Period size: 48 Copynumber: 4.6 Consensus size: 47
64263511 CGATGCTGAC
* * * *
64263521 GCCATGTCCTAGACATGGTCTTACACTAGC-TCTCACATATTTGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTA-CACCTCTCATA---GTACCGAT
*
64263571 GCCATGTCCCAGACATGGTCTTACACTGACACCTCT-ATAGGTACCCAT
1 GCCATGTCCCAGACATGGTCTTACACT-ACACCTCTCATA-GTACCGAT
* *
64263619 GCCATGTCCCGGACATGGTCTTACACTAACACATCTCATAG--CCGAT
1 GCCATGTCCCAGACATGGTCTTACACT-ACACCTCTCATAGTACCGAT
* *
64263665 G-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTCA-A-TACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTA-CAC-C-TCTCATAGTACCGAT
64263711 GCCATGTCCCAGACATGGTCTTACACTA
1 GCCATGTCCCAGACATGGTCTTACACTA
64263739 GCACACAAAT
Statistics
Matches: 143, Mismatches: 15, Indels: 22
0.79 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 12 0.08
45 13 0.09
46 16 0.11
47 13 0.09
48 51 0.36
49 3 0.02
50 30 0.21
51 4 0.03
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTACACCTCTCATAGTACCGAT
Found at i:64270502 original size:30 final size:30
Alignment explanation
Indices: 64270466--64270566 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
64270456 GACAAGATTG
* * *
64270466 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
64270496 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
64270524 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
64270553 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64270567 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:64270578 original size:29 final size:28
Alignment explanation
Indices: 64270495--64270570 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
64270485 AAAATTGTAC
* *
64270495 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
64270523 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
64270552 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
64270571 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:64278371 original size:30 final size:30
Alignment explanation
Indices: 64278335--64278435 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
64278325 GACAAGATTG
* * *
64278335 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
64278365 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
64278393 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
64278422 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64278436 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:64278447 original size:29 final size:28
Alignment explanation
Indices: 64278364--64278439 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
64278354 AAAATTGTAC
* *
64278364 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
64278392 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
64278421 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
64278440 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:64283349 original size:29 final size:28
Alignment explanation
Indices: 64283315--64283417 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
64283305 TACTCAATCA
*
64283315 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
64283344 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
64283373 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
64283402 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64283418 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:64297197 original size:29 final size:29
Alignment explanation
Indices: 64297164--64297237 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
64297154 GTGACGAGAT
64297164 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
64297193 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
64297222 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
64297238 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:64297253 original size:29 final size:29
Alignment explanation
Indices: 64297221--64297296 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
64297211 CTGGAAATAT
* *
64297221 ATGGCACTAAGTGTGCGAG-CTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCCT-AAAGCGC
** * *
64297250 ATGGCACTGTGTGTGCGGGCCTAAATCGC
1 ATGGCACTAAGTGTGCGAGCCTAAAGCGC
64297279 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
64297297 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 35 0.95
30 2 0.05
ACGTcount: A:0.22, C:0.21, G:0.36, T:0.21
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCCTAAAGCGC
Found at i:64298833 original size:15 final size:15
Alignment explanation
Indices: 64298815--64298844 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
64298805 ATAGGTGTTC
64298815 TAGCAAATCTCATGA
1 TAGCAAATCTCATGA
64298830 TAGCAAATCTCATGA
1 TAGCAAATCTCATGA
64298845 AATCCATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (15 bp):
TAGCAAATCTCATGA
Found at i:64302734 original size:43 final size:43
Alignment explanation
Indices: 64302577--64302735 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
64302567 TATGTGTTTT
* * *
64302577 CGTGTAAGACCACATCTGGGATGTTGGCATCGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * * ** *
64302621 CGTGTAAGAACATGTATGGGACATTAACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * *
64302663 CGTGTAAGACC-CTGTCTGGAATAG-TGGCATCGATATTTGATCA
1 CGTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTA
*
64302706 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
64302736 TGTATGAGCT
Statistics
Matches: 86, Mismatches: 23, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
42 26 0.30
43 35 0.41
44 25 0.29
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:64305848 original size:8 final size:8
Alignment explanation
Indices: 64305832--64305861 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
64305822 TTGTTCAACC
64305832 AATAAAAT
1 AATAAAAT
*
64305840 AATATAAT
1 AATAAAAT
64305848 AATAAAAT
1 AATAAAAT
64305856 AATAAA
1 AATAAA
64305862 TAGTGCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
AATAAAAT
Found at i:64308781 original size:40 final size:40
Alignment explanation
Indices: 64308707--64308931 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
64308697 AACCCAAGTA
* * *
64308707 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
64308746 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
64308786 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * * *
64308826 CCTTCGGGACTTAGCCCGAATATAGTCAATAGCACAACTA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64308866 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
64308905 CCTTCGAGACTTAGCCCGGATATAGTC
1 CCTTCGGGACTTAGCCCGGATATAGTC
64308932 CGAATAATCA
Statistics
Matches: 162, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 40 0.25
40 120 0.74
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:64308815 original size:80 final size:80
Alignment explanation
Indices: 64308706--64308931 Score: 316
Period size: 80 Copynumber: 2.9 Consensus size: 80
64308696 AAACCCAAGT
* * *
64308706 ACCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATTCCTTCGGGTCTTAGCCCGGATATA
1 ACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
64308770 GTCACTAGCACAA-A
66 GTCAATAGCACAACA
* *
64308784 AGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAACGCCTTCGGGACTTAGCCCGAATAT
1 A-CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
64308849 AGTCAATAGCACAACT
65 AGTCAATAGCACAACA
* * *
64308865 ACCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCAC-CATGCCTTCGAGACTTAGCCCGGATAT
1 ACCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
64308928 AGTC
65 AGTC
64308932 CGAATAATCA
Statistics
Matches: 132, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 40 0.30
80 89 0.67
81 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
ACCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTCAATAGCACAACA
Found at i:64312558 original size:42 final size:42
Alignment explanation
Indices: 64312502--64312606 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
64312492 GTAACTCAAG
* * *
64312502 AATCTCGCACACTAAGTTCCAA-TACGTACCCGAAGCTATCTC
1 AATCTCACACACTAAGTGCCAACT-CATACCCGAAGCTATCTC
** *
64312544 AAT-TACACACACTAAGTGCCAACTCATAGTCGAAGCTATCTT
1 AATCT-CACACACTAAGTGCCAACTCATACCCGAAGCTATCTC
64312586 AATCTCACACACTAAGTGCCA
1 AATCTCACACACTAAGTGCCA
64312607 TATATAGCTG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 51 0.94
43 2 0.04
ACGTcount: A:0.34, C:0.30, G:0.11, T:0.24
Consensus pattern (42 bp):
AATCTCACACACTAAGTGCCAACTCATACCCGAAGCTATCTC
Found at i:64312637 original size:42 final size:42
Alignment explanation
Indices: 64312549--64312646 Score: 98
Period size: 42 Copynumber: 2.4 Consensus size: 42
64312539 ATCTCAATTA
* * *
64312549 CACACACTAAGTGCCAACTCATAGTCGAAGCTATCTTAATCT
1 CACACACTAAGTGCCAACTCATAGTCGAAGCTATCTAAACCG
*
64312591 CACACACTAAGTGCCATA-T-ATAG-CTGAAGCTATGTAAAACCG
1 CACACACTAAGTGCCA-ACTCATAGTC-GAAGCTATCT-AAACCG
64312633 --CACACTAAGTGCCA
1 CACACACTAAGTGCCA
64312647 CAAATAGTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
40 15 0.31
41 13 0.27
42 20 0.41
43 1 0.02
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (42 bp):
CACACACTAAGTGCCAACTCATAGTCGAAGCTATCTAAACCG
Found at i:64314222 original size:10 final size:11
Alignment explanation
Indices: 64314207--64314245 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
64314197 CAATTTGTCT
64314207 GTTTTTGGCTC
1 GTTTTTGGCTC
64314218 GTTTTTGGCTC
1 GTTTTTGGCTC
64314229 GTTTCTT-GCTC
1 GTTT-TTGGCTC
64314240 -TTTTTG
1 GTTTTTG
64314246 CTATCCTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.08
10 3 0.12
11 19 0.73
12 2 0.08
ACGTcount: A:0.00, C:0.18, G:0.23, T:0.59
Consensus pattern (11 bp):
GTTTTTGGCTC
Found at i:64318069 original size:19 final size:21
Alignment explanation
Indices: 64318036--64318075 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
64318026 GAAGATGATG
*
64318036 AATAGTGAAAGGGAG-ATTTA
1 AATAGTGAAAAGGAGAATTTA
64318056 AATAG-GAAAAGGAGAATTTA
1 AATAGTGAAAAGGAGAATTTA
64318076 GGGTTACAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.23
Consensus pattern (21 bp):
AATAGTGAAAAGGAGAATTTA
Found at i:64327850 original size:40 final size:40
Alignment explanation
Indices: 64327795--64327964 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
64327785 AACATTGGAA
64327795 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64327835 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
64327875 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
64327914 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
64327955 CTATATCCGG
1 ATATATCCGG
64327965 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:64335943 original size:40 final size:40
Alignment explanation
Indices: 64335888--64336057 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
64335878 AACATTGGAA
64335888 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
64335928 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
64335968 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
64336007 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
64336048 CTATATCCGG
1 ATATATCCGG
64336058 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:64348329 original size:26 final size:25
Alignment explanation
Indices: 64348300--64348357 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
64348290 AGAAGATTAA
* * *
64348300 AAGCTTTAAGATGGTAGAAATAGTTG
1 AAGCTTTAAAATGATA-AAATAGTAG
* *
64348326 AAGCTTGAAAATGATAAAATGGTAG
1 AAGCTTTAAAATGATAAAATAGTAG
64348351 AAGCTTT
1 AAGCTTT
64348358 GTACAAAGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.29
Consensus pattern (25 bp):
AAGCTTTAAAATGATAAAATAGTAG
Found at i:64349690 original size:27 final size:28
Alignment explanation
Indices: 64349659--64349730 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 28
64349649 AATTCAAATT
*
64349659 TTCAATTTGAAATTCGAA-TATAAAAAA
1 TTCAAATTGAAATTCGAATTATAAAAAA
* * *
64349686 TTCAAATTGCAATTTGAATTTTAAAAAAA
1 TTCAAATTGAAATTCGAATTAT-AAAAAA
64349715 TGTCAAATTGGAAATT
1 T-TCAAATT-GAAATT
64349731 TGAAATTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 15 0.42
28 2 0.06
29 7 0.19
30 7 0.19
31 5 0.14
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (28 bp):
TTCAAATTGAAATTCGAATTATAAAAAA
Found at i:64349965 original size:17 final size:18
Alignment explanation
Indices: 64349935--64349968 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
64349925 ATTAATATAT
64349935 ATTTTTATAATTTTTAAA
1 ATTTTTATAATTTTTAAA
*
64349953 ATTTTT-TAGTTTTTAA
1 ATTTTTATAATTTTTAA
64349969 CTCATCTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (18 bp):
ATTTTTATAATTTTTAAA
Found at i:64353187 original size:44 final size:44
Alignment explanation
Indices: 64352637--64353198 Score: 709
Period size: 44 Copynumber: 12.8 Consensus size: 44
64352627 TCACCGATAG
* * * * *
64352637 CAGATTTGGCGTCTTTGTGTTGTCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
64352681 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * *
64352725 CAGATTTGGTGTCTCCGTATTGATAGAGAGCAGATTGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * *
64352769 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * *
64352813 CAGATTTGACATCTCTGTATTGACAGAGAGCAGATCAAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * *
64352857 CAGATTTGGCGTCTCTATATTGTCAAAGAGCATATCGAAGAT-A
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
64352900 GCAGATTTGGCATCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* ** *
64352945 CAGATTTGGCGTCTCTATATTGTTAAAGAGCAGATCGAAGAT-A
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
** * * *
64352988 GCAGATTTGGTATCTCTATATTGACAGAGAGCAAATCAAAGATGA
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* *
64353033 CAGATTTGGCATCTCTGTATT-AGCAGAGAGTAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGA-CAGAGAGCAGATCGAAGATGA
* *
64353077 CAGATTTGGCATCTCTGTATTGATAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
*
64353121 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATTGAAGAT-A
1 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
* * * *
64353164 GTAGATTTGGCATCTCTGTATTGATAAAGAGCAGA
1 -CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGA
64353199 CCAAAGATAG
Statistics
Matches: 451, Mismatches: 60, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
43 4 0.01
44 444 0.98
45 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
Found at i:64354305 original size:44 final size:44
Alignment explanation
Indices: 64354245--64354557 Score: 427
Period size: 44 Copynumber: 7.1 Consensus size: 44
64354235 TACCAATGAC
* *
64354245 GCCAAATCTG-CTATCTTCAATCTGCTCTCTGTCAATACAGAGAC
1 GCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGAT
* *
64354289 GCCAAATCTGTCATCTTCTATCTGCTCTCTATCAATACAGAGAT
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAT
* *
64354333 GCCAAATCTGTCATATTCGATCTACTCTCTG-CTAATACAGAGAT
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTC-AATACAGAGAT
* *
64354377 GCCAAATCCGTCATCTTCGATTTGCTCTCTGTCAATACAGAGAT
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAT
* * *
64354421 GCCAAATCTG-CTATCTTCGATCTGCTCTCTGACAATATAGAGAC
1 GCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGAT
*
64354465 ACCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAT
1 GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAT
* * *
64354509 GCCAAATCTG-CTATCTTCGATATGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGAT
64354553 GCCAA
1 GCCAA
64354558 CTCTCTGACA
Statistics
Matches: 239, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
43 3 0.01
44 233 0.97
45 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGAT
Found at i:64354567 original size:25 final size:25
Alignment explanation
Indices: 64354533--64354582 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64354523 CTTCGATATG
64354533 CTCTCTGACAATATAGAGATGCCAA
1 CTCTCTGACAATATAGAGATGCCAA
64354558 CTCTCTGACAATATAGAGATGCCAA
1 CTCTCTGACAATATAGAGATGCCAA
64354583 ATCTGTCATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
CTCTCTGACAATATAGAGATGCCAA
Found at i:64354622 original size:44 final size:44
Alignment explanation
Indices: 64354558--64354849 Score: 399
Period size: 44 Copynumber: 6.7 Consensus size: 44
64354548 GAGATGCCAA
* * *
64354558 CTCTCTGACAATATAGAGATGCCAAATCTGTCATCTTCGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* * * *
64354602 CTCTCTGTCAATACAAAGATGTCAAATCTGTTATCTTCGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* * *
64354646 CTCTCTGACAATATAGAGACGCAAAATCTGTCATCTTCGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* * *
64354690 CTCTCTATCAATACAGAGACACCAAATCTGTCATCTTTGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* *
64354734 CTCTCTGTCAAT--AGAGAGGCCAAATCTATCATCTTCGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* *
64354776 CTCTCTGTCAATACAGAGACGCCAAATCTGTTATCTTTGATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
* *
64354820 CTCTCTGACAATACAAAGACGCCAAATCTG
1 CTCTCTGTCAATACAGAGACGCCAAATCTG
64354850 CTATTGGTGA
Statistics
Matches: 217, Mismatches: 29, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
42 38 0.18
44 179 0.82
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
CTCTCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTG
Found at i:64354622 original size:69 final size:69
Alignment explanation
Indices: 64354489--64354622 Score: 198
Period size: 69 Copynumber: 1.9 Consensus size: 69
64354479 CTTCGATCTG
* * *
64354489 CTCTCTGTCAATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGATG
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGACAATACAAAGATG
64354554 CCAA
66 CCAA
* * *
64354558 CTCTCTGACAATATAGAGATGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTCAATACAAAGAT
1 CTCTCTGACAATACAGAGATGCCAAATCTGCT-ATCTTCGATATGCTCTCTGACAATACAAAGAT
64354622 G
65 G
64354623 TCAAATCTGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
68 1 0.02
69 57 0.98
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (69 bp):
CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATATGCTCTCTGACAATACAAAGATG
CCAA
Found at i:64354648 original size:113 final size:113
Alignment explanation
Indices: 64354445--64354664 Score: 386
Period size: 113 Copynumber: 1.9 Consensus size: 113
64354435 CTTCGATCTG
*
64354445 CTCTCTGACAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGATG
1 CTCTCTGACAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGATG
64354510 CCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGATGCCAA
66 CCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGATGCCAA
**
64354558 CTCTCTGACAATATAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGATG
1 CTCTCTGACAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGATG
* * *
64354623 TCAAATCTGTTATCTTCGATCTGCTCTCTGACAATATAGAGA
66 CCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGA
64354665 CGCAAAATCT
Statistics
Matches: 101, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
113 101 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (113 bp):
CTCTCTGACAATATAGAGACACCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGATG
CCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGATGCCAA
Found at i:64354692 original size:157 final size:157
Alignment explanation
Indices: 64354401--64354708 Score: 433
Period size: 157 Copynumber: 2.0 Consensus size: 157
64354391 CTTCGATTTG
* * *
64354401 CTCTCTGTCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGACA
1 CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGACA
* * *
64354466 CCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGCTATCTTCGATA
66 CCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCAAAATCTGCTATCTTCGATA
*
64354531 TGCTCTCTGA-CAATATAGAGATGCCAA
131 TGCTCTCT-ATCAATACAGAGATGCCAA
* * *
64354558 CTCTCTGACAATATAGAGATGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTCAATACAAAGAT
1 CTCTCTGACAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGACAATACAAAGAC
** * *
64354622 GTCAAATCTGTTATCTTCGATCTGCTCTCTGACAATATAGAGACGCAAAATCTG-TCATCTTCGA
65 ACCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCAAAATCTGCT-ATCTTCGA
*
64354686 TCTGCTCTCTATCAATACAGAGA
129 TATGCTCTCTATCAATACAGAGA
64354709 CACCAAATCT
Statistics
Matches: 133, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
156 3 0.02
157 130 0.98
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (157 bp):
CTCTCTGACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAAAGACA
CCAAATCTGTCATCTTCGATCTGCTCTCTGACAATACAGAGACGCAAAATCTGCTATCTTCGATA
TGCTCTCTATCAATACAGAGATGCCAA
Found at i:64354703 original size:201 final size:201
Alignment explanation
Indices: 64354356--64354751 Score: 625
Period size: 201 Copynumber: 2.0 Consensus size: 201
64354346 TATTCGATCT
* *
64354356 ACTCTCTGCTAATACAGAGATGCCAAATCCGTCATCTTCGATTTGCTCTCTGTCAATACAGAGAT
1 ACTCTCTGCTAATACAGAGATGCCAAATCCGTCATCTTCGATCTGCTCTCTGTCAATACAAAGAT
*
64354421 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGACACCAAATCTGTCATCTTCGAT
66 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGACACAAAATCTGTCATCTTCGAT
* ** *
64354486 CTGCTCTCTGTCAATACAGAGATGCCAAATCTG-CTATCTTCGATATGCTCTCTGACAATATAGA
131 CTGCTCTCTATCAATACAGAGACACCAAATCTGTC-ATCTTCGATATGCTCTCTGACAATAGAGA
64354550 GATGCCA
195 GATGCCA
* *
64354557 ACTCTCTGAC-AATATAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGA
1 ACTCTCTG-CTAATACAGAGATGCCAAATCCGTCATCTTCGATCTGCTCTCTGTCAATACAAAGA
* * *
64354621 TGTCAAATCTGTTATCTTCGATCTGCTCTCTGACAATATAGAGACGCAAAATCTGTCATCTTCGA
65 TGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGACACAAAATCTGTCATCTTCGA
* * *
64354686 TCTGCTCTCTATCAATACAGAGACACCAAATCTGTCATCTTTGATCTGCTCTCTGTCAATAGAGA
130 TCTGCTCTCTATCAATACAGAGACACCAAATCTGTCATCTTCGATATGCTCTCTGACAATAGAGA
64354751 G
195 G
64354752 GCCAAATCTA
Statistics
Matches: 178, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
201 176 0.99
202 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (201 bp):
ACTCTCTGCTAATACAGAGATGCCAAATCCGTCATCTTCGATCTGCTCTCTGTCAATACAAAGAT
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATATAGAGACACAAAATCTGTCATCTTCGAT
CTGCTCTCTATCAATACAGAGACACCAAATCTGTCATCTTCGATATGCTCTCTGACAATAGAGAG
ATGCCA
Found at i:64354716 original size:88 final size:88
Alignment explanation
Indices: 64354558--64354849 Score: 444
Period size: 88 Copynumber: 3.3 Consensus size: 88
64354548 GAGATGCCAA
* * *
64354558 CTCTCTGACAATATAGAGATGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAAAGATG
1 CTCTCTGACAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACG
* *
64354623 TCAAATCTGTTATCTTCGATCTG
66 CCAAATCTGTTATCTTTGATCTG
* * *
64354646 CTCTCTGACAATATAGAGACGCAAAATCTGTCATCTTCGATCTGCTCTCTATCAATACAGAGACA
1 CTCTCTGACAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACG
*
64354711 CCAAATCTGTCATCTTTGATCTG
66 CCAAATCTGTTATCTTTGATCTG
* * *
64354734 CTCTCTGTC-A-ATAGAGAGGCCAAATCTATCATCTTCGATCTGCTCTCTGTCAATACAGAGACG
1 CTCTCTGACAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACG
64354797 CCAAATCTGTTATCTTTGATCTG
66 CCAAATCTGTTATCTTTGATCTG
* *
64354820 CTCTCTGACAATACAAAGACGCCAAATCTG
1 CTCTCTGACAATATAGAGACGCCAAATCTG
64354850 CTATTGGTGA
Statistics
Matches: 181, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
86 78 0.43
87 2 0.01
88 101 0.56
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (88 bp):
CTCTCTGACAATATAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTCAATACAGAGACG
CCAAATCTGTTATCTTTGATCTG
Found at i:64366859 original size:15 final size:14
Alignment explanation
Indices: 64366837--64366874 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
64366827 TATACTAATA
64366837 ATAAATAATAAAAT
1 ATAAATAATAAAAT
64366851 ATAATATAATAAAAT
1 ATAA-ATAATAAAAT
*
64366866 AAAAATAAT
1 ATAAATAAT
64366875 GTAAGGGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATAAATAATAAAAT
Found at i:64366919 original size:14 final size:14
Alignment explanation
Indices: 64366884--64366980 Score: 74
Period size: 14 Copynumber: 6.7 Consensus size: 14
64366874 TGTAAGGGTT
64366884 AATATATATAATAA
1 AATATATATAATAA
*
64366898 AAGATATATAATAA
1 AATATATATAATAA
* *
64366912 AATTTATA-AATAG
1 AATATATATAATAA
64366925 AATATATGATAATATA
1 AATATAT-ATAATA-A
**
64366941 AATA-ATATGGT-A
1 AATATATATAATAA
64366953 AATAATATATAAATAAA
1 AAT-ATATAT-AAT-AA
64366970 AATATTATATA
1 AATA-TATATA
64366981 CTATTTTTAC
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
12 4 0.06
13 11 0.17
14 27 0.42
15 7 0.11
16 6 0.09
17 9 0.14
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (14 bp):
AATATATATAATAA
Found at i:64367243 original size:30 final size:30
Alignment explanation
Indices: 64367209--64367267 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
64367199 TATAATGGCC
* *
64367209 ATTAGGACTAAATTGAAACAAAAATAAAAG
1 ATTAGGACCAAATTAAAACAAAAATAAAAG
* **
64367239 ATTAGGGCCAAATTAAAATTAAAATAAAA
1 ATTAGGACCAAATTAAAACAAAAATAAAA
64367268 TGAAATTGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (30 bp):
ATTAGGACCAAATTAAAACAAAAATAAAAG
Found at i:64371601 original size:39 final size:39
Alignment explanation
Indices: 64371506--64371687 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
64371496 AATGATGTCT
* * * *
64371506 GGGCTAAGTCCCGAAGTC-TTTGTGCTAAGTGACTATGTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-ATCC
*
64371546 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATCCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT-CC
64371586 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AATCC
* * *
64371625 GGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATCC
*
64371665 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
64371688 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.65
41 8 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATCC
Found at i:64371709 original size:79 final size:79
Alignment explanation
Indices: 64371556--64371710 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
64371546 GGACTAAGAT
* * **
64371556 CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
64371621 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
64371635 CCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
64371698 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
64371711 ACTCCGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.60
80 25 0.37
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:64376491 original size:3 final size:3
Alignment explanation
Indices: 64376485--64376518 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
64376475 GAATTCTGTT
*
64376485 ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
64376519 ATGAAACGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:64378073 original size:13 final size:13
Alignment explanation
Indices: 64378055--64378080 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64378045 GAACAAATTG
64378055 AAGTCACACGTCC
1 AAGTCACACGTCC
64378068 AAGTCACACGTCC
1 AAGTCACACGTCC
64378081 GTGTGCTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (13 bp):
AAGTCACACGTCC
Found at i:64389681 original size:32 final size:32
Alignment explanation
Indices: 64389632--64389694 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
64389622 CATTAATCAT
*
64389632 GGCATACATAGGTAACCAAAACATCCACAAAA
1 GGCATACATAGGCAACCAAAACATCCACAAAA
*
64389664 GGCATACGTAGGCAACCAAAACATCCACAAA
1 GGCATACATAGGCAACCAAAACATCCACAAA
64389695 GCAAGGCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.48, C:0.27, G:0.14, T:0.11
Consensus pattern (32 bp):
GGCATACATAGGCAACCAAAACATCCACAAAA
Found at i:64395411 original size:77 final size:77
Alignment explanation
Indices: 64395284--64395437 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
64395274 TATATTTGGA
64395284 GTGGTCATCAAGTATAGAAGCTAGCTCATGGCAAATGTTTTTGTAAATTTATGAAGATGACATTC
1 GTGGTCATCAAGTATAGAAGCTAGCTCATGGCAAATGTTTTTGTAAATTTATGAAGATGACATTC
64395349 GGTCATGGATGT
66 GGTCATGGATGT
64395361 GTGGTCATCAAGTATAGAAGCTAGCTCATGGCAAATGTTTTTGTAAATTTATGAAGATGACATTC
1 GTGGTCATCAAGTATAGAAGCTAGCTCATGGCAAATGTTTTTGTAAATTTATGAAGATGACATTC
64395426 GGTCATGGATGT
66 GGTCATGGATGT
64395438 TTGTATTTTT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (77 bp):
GTGGTCATCAAGTATAGAAGCTAGCTCATGGCAAATGTTTTTGTAAATTTATGAAGATGACATTC
GGTCATGGATGT
Found at i:64397051 original size:47 final size:47
Alignment explanation
Indices: 64396995--64397387 Score: 642
Period size: 47 Copynumber: 8.4 Consensus size: 47
64396985 ATGTATGAGA
64396995 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64397042 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
64397089 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
64397136 TGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
64397183 TGCATATATGAGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
64397230 TGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
64397277 TGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
64397324 TGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGGATGTGAAAG
1 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
64397371 TGTATAAATGTGATAAG
1 TGTATATATGTGATAAG
64397388 TCCCGAAGGG
Statistics
Matches: 324, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 324 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
Found at i:64397564 original size:37 final size:37
Alignment explanation
Indices: 64397505--64397587 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
64397495 CCGAGCTCTA
* *
64397505 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
64397542 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
*
64397579 AAGCCCCGA
1 AAGACCCGA
64397588 ACTAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.33, T:0.20
Consensus pattern (37 bp):
AAGACCCGATGACCACGGGTGGAGATTATGTCCGGGT
Found at i:64401729 original size:9 final size:9
Alignment explanation
Indices: 64401715--64401826 Score: 65
Period size: 9 Copynumber: 12.9 Consensus size: 9
64401705 GAAAAAGAAT
64401715 ATTTTTATA
1 ATTTTTATA
*
64401724 ATTTTTGTA
1 ATTTTTATA
*
64401733 ATTTTCATA
1 ATTTTTATA
* *
64401742 ATTTTCCAAA
1 ATTTT-TATA
*
64401752 ATGTTTATA
1 ATTTTTATA
64401761 A-TTTTATA
1 ATTTTTATA
*
64401769 ATTATTTACA
1 ATT-TTTATA
*
64401779 ATATTTAT-
1 ATTTTTATA
*
64401787 -TATTTAT-
1 ATTTTTATA
*
64401794 -TTTTTGT-
1 ATTTTTATA
*
64401801 ATATTTATA
1 ATTTTTATA
*
64401810 ATTTCTATA
1 ATTTTTATA
64401819 ATTTTTAT
1 ATTTTTAT
64401827 GTAATTTTTT
Statistics
Matches: 80, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
7 12 0.15
8 12 0.15
9 42 0.52
10 14 0.17
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTTTTATA
Found at i:64401937 original size:18 final size:17
Alignment explanation
Indices: 64401903--64401942 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
64401893 AAAAATATTT
**
64401903 ATTTTATATTTTTATTA
1 ATTTTATATTTCCATTA
64401920 ATTTTATGATTTCCATTA
1 ATTTTAT-ATTTCCATTA
64401938 ATTTT
1 ATTTT
64401943 TTATATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (17 bp):
ATTTTATATTTCCATTA
Found at i:64404462 original size:29 final size:25
Alignment explanation
Indices: 64404406--64404457 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
64404396 ATGTTGAAAC
64404406 ATCCAAAAACCAAATCTAGAGAGGT
1 ATCCAAAAACCAAATCTAGAGAGGT
64404431 ATCCAAAAACCAAATCTAGAGAGGT
1 ATCCAAAAACCAAATCTAGAGAGGT
64404456 AT
1 AT
64404458 GTATCTTGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.17
Consensus pattern (25 bp):
ATCCAAAAACCAAATCTAGAGAGGT
Found at i:64406336 original size:12 final size:12
Alignment explanation
Indices: 64406319--64406388 Score: 56
Period size: 12 Copynumber: 5.8 Consensus size: 12
64406309 AGTAATTGTG
64406319 TTTAATTTTATA
1 TTTAATTTTATA
*
64406331 TTTAATTTAATA
1 TTTAATTTTATA
64406343 TTTGAA-TTTAT-
1 TTT-AATTTTATA
64406354 TTGTAATTTT-TA
1 TT-TAATTTTATA
* *
64406366 TTTGATATTTAAA
1 TTTAAT-TTTATA
*
64406379 TTTAGTTTTA
1 TTTAATTTTA
64406389 GAATTCAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
11 8 0.17
12 31 0.67
13 7 0.15
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (12 bp):
TTTAATTTTATA
Found at i:64406341 original size:17 final size:17
Alignment explanation
Indices: 64406319--64406382 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
64406309 AGTAATTGTG
64406319 TTTAATTTTATATTTAA
1 TTTAATTTTATATTTAA
*
64406336 TTTAATATTTGA-ATTTAT
1 TTTAAT-TTT-ATATTTAA
64406354 TTGTAATTTT-TATTTGATA
1 TT-TAATTTTATATTT-A-A
*
64406373 TTTAAATTTA
1 TTTAATTTTA
64406383 GTTTTAGAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
17 10 0.27
18 20 0.54
19 7 0.19
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTAATTTTATATTTAA
Found at i:64406360 original size:24 final size:24
Alignment explanation
Indices: 64406325--64406382 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 24
64406315 TGTGTTTAAT
64406325 TTTATATTTAATTTAATATTTGA-A
1 TTTATATTTAATTT-ATATTTGATA
*
64406349 TTTAT-TTGTAATTTTTATTTGATA
1 TTTATATT-TAATTTATATTTGATA
*
64406373 TTTAAATTTA
1 TTTATATTTA
64406383 GTTTTAGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 9 0.31
24 18 0.62
25 2 0.07
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (24 bp):
TTTATATTTAATTTATATTTGATA
Found at i:64411503 original size:21 final size:21
Alignment explanation
Indices: 64411479--64411520 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
64411469 CAAAAAGTTT
* *
64411479 TTTTTTAAAGGATTGAAATTA
1 TTTTTGAAAGAATTGAAATTA
64411500 TTTTTGAAAGAATTGAAATTA
1 TTTTTGAAAGAATTGAAATTA
64411521 AATTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.45
Consensus pattern (21 bp):
TTTTTGAAAGAATTGAAATTA
Found at i:64411572 original size:9 final size:8
Alignment explanation
Indices: 64411549--64411590 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
64411539 TAAGTAAAAA
64411549 TATAATTT
1 TATAATTT
64411557 TATAATTT
1 TATAATTT
64411565 TAATAA-TT
1 T-ATAATTT
*
64411573 TATATTTT
1 TATAATTT
64411581 TATAATTT
1 TATAATTT
64411589 TA
1 TA
64411591 GGGAATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 3 0.10
8 23 0.77
9 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATAATTT
Found at i:64411590 original size:16 final size:17
Alignment explanation
Indices: 64411549--64411590 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 17
64411539 TAAGTAAAAA
64411549 TATAATTTTATAATTTT
1 TATAATTTTATAATTTT
*
64411566 AATAA-TTTAT-ATTTT
1 TATAATTTTATAATTTT
64411581 TATAATTTTA
1 TATAATTTTA
64411591 GGGAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TATAATTTTATAATTTT
Found at i:64412457 original size:37 final size:35
Alignment explanation
Indices: 64412385--64412457 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 35
64412375 GCATTACTAA
* *
64412385 AAAATTATATTTAAAAATAATTATAATATATAATTT
1 AAAATTATATTTAAAAATAA-TATAAAATAAAATTT
64412421 AAAATTATTATTTAAAAATTTAA-ATAAAATAAAATTT
1 AAAATTA-TATTTAAAAA--TAATATAAAATAAAATTT
64412458 GTGATAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 7 0.22
37 22 0.69
39 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (35 bp):
AAAATTATATTTAAAAATAATATAAAATAAAATTT
Found at i:64412491 original size:17 final size:17
Alignment explanation
Indices: 64412461--64412511 Score: 75
Period size: 17 Copynumber: 2.9 Consensus size: 17
64412451 AAAATTTGTG
* *
64412461 ATAATTATACATTTAAGA
1 ATAATTAGA-ATTTAAAA
64412479 ATAATTAGAATTTAAAA
1 ATAATTAGAATTTAAAA
64412496 ATAATTAGAATTTAAA
1 ATAATTAGAATTTAAA
64412512 TTGTAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 23 0.74
18 8 0.26
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (17 bp):
ATAATTAGAATTTAAAA
Found at i:64412629 original size:16 final size:16
Alignment explanation
Indices: 64412610--64412660 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
64412600 ATATTAGAGT
64412610 TTATTATTTTAATTAA
1 TTATTATTTTAATTAA
*
64412626 TTATTATTTTAAATAA
1 TTATTATTTTAATTAA
*
64412642 -TGTTATTTTACATTAA
1 TTATTATTTTA-ATTAA
64412658 TTA
1 TTA
64412661 CATAAAGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 9 0.31
16 19 0.66
17 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (16 bp):
TTATTATTTTAATTAA
Found at i:64417826 original size:337 final size:337
Alignment explanation
Indices: 64417211--64417888 Score: 1198
Period size: 337 Copynumber: 2.0 Consensus size: 337
64417201 TATATGTGGC
64417211 ATGTTAAGATGGTTATTGTATGATCACATAGTATGAATTTGCACATGCATTGGAGTGGGATATGG
1 ATGTTAAGATGGTTATTGTATGATCACATAGTATGAATTTGCACATGCATTGGAGTGGGATATGG
* *
64417276 TTATATTATGGAGGAAGTCTGATTTTGGCAGTTATACTACGTTAAATAATTCTGTTAATATTTCC
66 TTATATTATGGAGGAAGTCTGATTCTAGCAGTTATACTACGTTAAATAATTCTGTTAATATTTCC
* *
64417341 ACAACATATCTGACAGCATAGCTACATATCATTTGAGTAGCATACGACTACAACTTAGTGTGATG
131 ACAACATATCTGACAGCACAGCTACATATCATTTGAGTAGCATACGACTACAACTTAGTATGATG
* *
64417406 GATTGATGGGTTCTAATAACCCTAATTGGTGTGATTGGATGGACAGAGTTGGTGTGTAGCAGTTG
196 GATGGATGGGTACTAATAACCCTAATTGGTGTGATTGGATGGACAGAGTTGGTGTGTAGCAGTTG
*
64417471 GAGGTAGGATTGTTTTCTATGATATTGCTTTGCTAAGCATGTTATAGTGTCTAATCTATCTGTTT
261 GAGGTAGGATTGTTTTCTATGATATTGCTTTGCTAAGCATGTTATAGTGTCTAATCTATCTGTTC
64417536 TGATGTGTGAAT
326 TGATGTGTGAAT
*
64417548 ATGTTAAGATGGTTATTGTATGATCACATAGTATGAATTTGCACATGTATTGGAGTGGGATATGG
1 ATGTTAAGATGGTTATTGTATGATCACATAGTATGAATTTGCACATGCATTGGAGTGGGATATGG
64417613 TTATATTATGGAGGAAGTCTGATTCTAGCAGTTATACTACGTTAAATAAATT-TGTTAATATTTC
66 TTATATTATGGAGGAAGTCTGATTCTAGCAGTTATACTACGTTAAAT-AATTCTGTTAATATTTC
* *
64417677 CACAACATATCTGACAGCACAGCTGCATATCATTTGAGTGGCATACGACTACAAC-TAGGTATGA
130 CACAACATATCTGACAGCACAGCTACATATCATTTGAGTAGCATACGACTACAACTTA-GTATGA
* *
64417741 TGGATGGATGGGTACTAATAACCCTAATTTGTGTGATTGGATGGACGGAGTTGGTGTGTAGCAGT
194 TGGATGGATGGGTACTAATAACCCTAATTGGTGTGATTGGATGGACAGAGTTGGTGTGTAGCAGT
*
64417806 TGGAGGTAGGATTGTTTTCTATGATATTGCTTTGTTAAGCATGTTATAGTGTCTAATCTATCTGT
259 TGGAGGTAGGATTGTTTTCTATGATATTGCTTTGCTAAGCATGTTATAGTGTCTAATCTATCTGT
*
64417871 TCTGATGTGTGCAT
324 TCTGATGTGTGAAT
64417885 ATGT
1 ATGT
64417889 GCATGATTCT
Statistics
Matches: 325, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
336 2 0.01
337 319 0.98
338 4 0.01
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (337 bp):
ATGTTAAGATGGTTATTGTATGATCACATAGTATGAATTTGCACATGCATTGGAGTGGGATATGG
TTATATTATGGAGGAAGTCTGATTCTAGCAGTTATACTACGTTAAATAATTCTGTTAATATTTCC
ACAACATATCTGACAGCACAGCTACATATCATTTGAGTAGCATACGACTACAACTTAGTATGATG
GATGGATGGGTACTAATAACCCTAATTGGTGTGATTGGATGGACAGAGTTGGTGTGTAGCAGTTG
GAGGTAGGATTGTTTTCTATGATATTGCTTTGCTAAGCATGTTATAGTGTCTAATCTATCTGTTC
TGATGTGTGAAT
Found at i:64418654 original size:24 final size:25
Alignment explanation
Indices: 64418616--64418663 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
64418606 AAAGTAAGAA
* *
64418616 ACTTTTTACTTTAGTCACTTTAGTT
1 ACTTTTTACTGTAGTCACTGTAGTT
*
64418641 ACTTTTT-CTGTAGTTACTGTAGT
1 ACTTTTTACTGTAGTCACTGTAGT
64418664 AAAACCGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.54
Consensus pattern (25 bp):
ACTTTTTACTGTAGTCACTGTAGTT
Found at i:64429176 original size:17 final size:16
Alignment explanation
Indices: 64429151--64429184 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
64429141 CACTTTTAAG
*
64429151 CATATATCACATTACA
1 CATATATCACATAACA
64429167 CATATAATCACATAACA
1 CATAT-ATCACATAACA
64429184 C
1 C
64429185 TTAAGCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (16 bp):
CATATATCACATAACA
Found at i:64429287 original size:41 final size:40
Alignment explanation
Indices: 64429148--64429287 Score: 180
Period size: 39 Copynumber: 3.5 Consensus size: 40
64429138 ATTCACTTTT
* * *
64429148 AAGC-ATATATCACATTACACATATAATCACATAACACTT-
1 AAGCAATATATCACAATACTCATATAATCACATAATA-TTC
* *
64429187 AAGC-ATATATCACAATACTCATATAATTACATAATGTTC
1 AAGCAATATATCACAATACTCATATAATCACATAATATTC
*
64429226 AAAC-ATATATCACAATACTCATATAATCACATAATATTC
1 AAGCAATATATCACAATACTCATATAATCACATAATATTC
64429265 AAGCATATATATCACAATACTCA
1 AAGCA-ATATATCACAATACTCA
64429288 GAAACATATT
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.02
39 70 0.79
41 17 0.19
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.30
Consensus pattern (40 bp):
AAGCAATATATCACAATACTCATATAATCACATAATATTC
Found at i:64437695 original size:21 final size:21
Alignment explanation
Indices: 64437671--64437719 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
64437661 CCCGATTATG
*
64437671 TTTTGCCCCTAAATTAGGTAT
1 TTTTACCCCTAAATTAGGTAT
64437692 TTTTACCCCTAAATTAGGTAT
1 TTTTACCCCTAAATTAGGTAT
64437713 TTTTACC
1 TTTTACC
64437720 GATTATGTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.45
Consensus pattern (21 bp):
TTTTACCCCTAAATTAGGTAT
Found at i:64446538 original size:39 final size:39
Alignment explanation
Indices: 64446494--64446631 Score: 204
Period size: 39 Copynumber: 3.5 Consensus size: 39
64446484 ACTAAGATCT
* *
64446494 GAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGCCC
1 GAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCC
* *
64446533 GAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGCCC
1 GAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCC
* * *
64446572 GAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-CCC
64446612 GAAGGCATTCGTGCGAGTTA
1 GAAGGCATTCGTGCGAGTTA
64446632 CTATAACCGG
Statistics
Matches: 90, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 68 0.76
40 22 0.24
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (39 bp):
GAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGCCC
Found at i:64446626 original size:40 final size:39
Alignment explanation
Indices: 64446494--64446660 Score: 201
Period size: 39 Copynumber: 4.2 Consensus size: 39
64446484 ACTAAGATCT
* * *
64446494 GAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGCCC
1 GAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGCCC
* * *
64446533 GAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGCCC
1 GAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGCCC
* *
64446572 GAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCC
1 GAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-CCC
* * *
64446612 GAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTCCC
1 GAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-CCC
64446652 GAAGGCATT
1 GAAGGCATT
64446661 TGAGCTAGTC
Statistics
Matches: 116, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 68 0.59
40 39 0.34
41 9 0.08
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (39 bp):
GAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGCCC
Found at i:64446685 original size:79 final size:78
Alignment explanation
Indices: 64446522--64446670 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 78
64446512 TAATAAATCT
* *
64446522 GGGTTAAGCCCGAAGGCATTTGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGTGCG
1 GGGTTAAGCCCGAAGGCATTCGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
*
64446587 AGTTACTAAACCC
66 AGTCACTAAACCC
* * *
64446600 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA-CCGGGGTT-TGTCCCGAAGGCATTTG
1 GGGTTAAG-CCCGAAGGCATTCGTACGAGTTAATA-AATCC-GGGTTAAG-CCCGAAGGCATTTG
*
64446663 AGCTAGTC
62 AGCGAGTC
64446671 GTTATATCCG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 8 0.13
79 26 0.43
80 26 0.43
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (78 bp):
GGGTTAAGCCCGAAGGCATTCGTACGAGTTAATAAATCCGGGTTAAGCCCGAAGGCATTTGAGCG
AGTCACTAAACCC
Found at i:64454530 original size:49 final size:49
Alignment explanation
Indices: 64454399--64454618 Score: 336
Period size: 49 Copynumber: 4.4 Consensus size: 49
64454389 TATCAAAATT
64454399 TGTGAAAGTGTATATATATGTGATAAGG-CTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64454447 TGTGAAAGTGTATATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG----TATA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
64454502 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
64454551 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64454600 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
64454619 ATGTGGTAAA
Statistics
Matches: 158, Mismatches: 5, Indels: 17
0.88 0.03 0.09
Matches are distributed among these distances:
48 13 0.08
49 94 0.59
51 4 0.03
52 4 0.03
54 14 0.09
55 25 0.16
56 4 0.03
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:64454742 original size:37 final size:37
Alignment explanation
Indices: 64454701--64454771 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
64454691 TTCCGGGTGA
64454701 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
64454738 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
64454772 TAAGACTTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
Found at i:64456870 original size:120 final size:120
Alignment explanation
Indices: 64456646--64456875 Score: 334
Period size: 120 Copynumber: 1.9 Consensus size: 120
64456636 GAATTGAGAA
* ** *
64456646 TGATGTATCCGGACTAAGTGCCGAAGAGCATTCGTGCTAATGATATATCTGGGCTAAATTCTGAA
1 TGATGTATCCGGACTAAGTGCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAACCCCGAA
* *
64456711 GAGCATTCGTGCTAGTGATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAG
66 GAGCATTCGTGCTAGTGATATATCCGGGATAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
64456766 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAA
1 TGATGTATCCGGACTAAGTGCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAACCCCGAA
* * * *
64456831 GAGCATTCGTGCTGGTGTTATATCCGGGTTAGGTCCCGAAGAGCA
66 GAGCATTCGTGCTAGTGATATATCCGGGATAAGTCCCGAAGAGCA
64456876 ATCATGCTGG
Statistics
Matches: 96, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TGATGTATCCGGACTAAGTGCCGAAGAGCATTCGTGCTAATGATATATCCGGGCTAAACCCCGAA
GAGCATTCGTGCTAGTGATATATCCGGGATAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:64456887 original size:40 final size:40
Alignment explanation
Indices: 64456646--64456875 Score: 280
Period size: 40 Copynumber: 5.8 Consensus size: 40
64456636 GAATTGAGAA
* * * *
64456646 TGATGTATCCGGACTAAGTGCCGAAGAGCATTCGTGCTAA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
64456686 TGATATATCTGGGCTAAATTCTGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
64456726 TGATGTATCCGGGATAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
64456766 TGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* ** *
64456806 TGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
64456846 TGTTATATCCGGGTTAGGTCCCGAAGAGCA
1 TGATATATCCGGGCTAAGTCCCGAAGAGCA
64456876 ATCATGCTGG
Statistics
Matches: 165, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 165 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:64460532 original size:51 final size:49
Alignment explanation
Indices: 64460288--64460504 Score: 373
Period size: 49 Copynumber: 4.4 Consensus size: 49
64460278 TATCAAAATT
64460288 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64460337 TGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
64460388 TGTGAAAAG-GTATATATATGTGATAAGGCCTCATGGCCGATGTGATGAA
1 TGTG-AAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
* *
64460437 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
64460486 TGTGAAAGTGTATATATAT
1 TGTGAAAGTGTATATATAT
64460505 ATGTGGTAAA
Statistics
Matches: 159, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
48 3 0.02
49 108 0.68
51 44 0.28
52 4 0.03
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:64460628 original size:37 final size:37
Alignment explanation
Indices: 64460587--64460657 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
64460577 TTCCGGGTGA
64460587 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
64460624 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
1 GACCCGATGACTACGTGTGGAGATTATGTCCGGG
64460658 TAAGACTTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (37 bp):
GACCCGATGACTACGTGTGGAGATTATGTCCGGGCAC
Found at i:64463678 original size:39 final size:39
Alignment explanation
Indices: 64463632--64463771 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
64463622 GGACTAAGAT
* *
64463632 CCGAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
*
64463671 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
* * *
64463710 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAG-C
64463750 CCGAAGGCATTCGTGCGAGTTA
1 CCGAAGGCATTCGTGCGAGTTA
64463772 CTATAACCGG
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 72 0.77
40 22 0.23
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGTTAAGC
Found at i:64463766 original size:40 final size:39
Alignment explanation
Indices: 64463632--64463800 Score: 214
Period size: 39 Copynumber: 4.3 Consensus size: 39
64463622 GGACTAAGAT
* * *
64463632 CCGAAGGCGTTCGTGCGAGTTAATAAATCTGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
64463671 CCGAAGGCATTTGTGCGAGTTAATAAATCCGGGTTAAGC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
* *
64463710 CCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAG-C
* * *
64463750 CCGAAGGCATTCGTGCGAGTTACTATAACCGGGGTT-TGTC
1 CCGAAGGCATTCGTGCGAGTTAATA-AACCCGGGTTAAG-C
64463790 CCGAAGGCATT
1 CCGAAGGCATT
64463801 TGAGCTAGTC
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 72 0.60
40 39 0.32
41 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGTTAATAAACCCGGGTTAAGC
Found at i:64466991 original size:46 final size:44
Alignment explanation
Indices: 64466941--64467055 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
64466931 GATGAATGCT
* *
64466941 AGTGTAAGGCATGTTTGGGACATGCATCGGCCT-CGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGACGT--GCC
* * *
64466987 AGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCC
64467031 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
64467056 AATTGGCACA
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 11 0.18
45 16 0.26
46 34 0.56
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGACGTGCC
Found at i:64468227 original size:20 final size:21
Alignment explanation
Indices: 64468189--64468227 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64468179 TCGAGTTGGT
*
64468189 CACATGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
64468210 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
64468228 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:64468713 original size:14 final size:14
Alignment explanation
Indices: 64468677--64468715 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
64468667 TTGTTTCACT
64468677 GAAAATGAATTTCGA
1 GAAAATG-ATTTCGA
*
64468692 -AAAATGATTTCTA
1 GAAAATGATTTCGA
64468705 GAAAATGATTT
1 GAAAATGATTT
64468716 ACTTTTCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.33
Consensus pattern (14 bp):
GAAAATGATTTCGA
Found at i:64469196 original size:15 final size:15
Alignment explanation
Indices: 64469176--64469228 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
64469166 TACTACAAAT
64469176 TATTTATTATTAATA
1 TATTTATTATTAATA
*
64469191 TATTTATAATTGTAATAAA
1 TATTTATTA-T-TAAT--A
*
64469210 TATTTATTATTAAAA
1 TATTTATTATTAATA
64469225 TATT
1 TATT
64469229 AATATTGAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 13 0.42
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.29
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (15 bp):
TATTTATTATTAATA
Found at i:64469292 original size:16 final size:16
Alignment explanation
Indices: 64469261--64469297 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
64469251 ATGTGAATAA
64469261 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
64469277 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
64469293 TATTA
1 TATTA
64469298 AAATAGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Done.