Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 205 of 318
Found at i:64469349 original size:22 final size:22
Alignment explanation
Indices: 64469309--64469364 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
64469299 AATAGAATTG
*
64469309 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
64469329 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
64469351 TATTAATAATTTAT
1 AAATAATAAATTAT
64469365 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:64469883 original size:27 final size:27
Alignment explanation
Indices: 64469842--64469931 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
64469832 ATCAGAGCAT
** *
64469842 GCCACAAAGGTTATTCTTTCCGAGTTC
1 GCCACAAAGACTATTCTTTCAGAGTTC
* * *
64469869 GCCACAAATACTATTATTTTAGAGTAT-
1 GCCACAAAGACTATTCTTTCAGAGT-TC
* * *
64469896 GCTACATAGACTATTCTTTCAGAGTAC
1 GCCACAAAGACTATTCTTTCAGAGTTC
64469923 GCCACAAAG
1 GCCACAAAG
64469932 GTTTTTTCTT
Statistics
Matches: 47, Mismatches: 14, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (27 bp):
GCCACAAAGACTATTCTTTCAGAGTTC
Found at i:64473317 original size:2 final size:2
Alignment explanation
Indices: 64473312--64473346 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
64473302 GTGTGTGCAT
64473312 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64473347 GTTGAATTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:64473394 original size:31 final size:29
Alignment explanation
Indices: 64473339--64473396 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 29
64473329 ATATATATAT
*
64473339 ATATATATGTTGAATTAAGTTGTAAAAGA
1 ATATAAATGTTGAATTAAGTTGTAAAAGA
64473368 ATATAAATG-TGAAGTTGAAGTATGTAAAA
1 ATATAAATGTTGAA-TT-AAGT-TGTAAAA
64473397 TATGAACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 4 0.16
29 10 0.40
30 4 0.16
31 7 0.28
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (29 bp):
ATATAAATGTTGAATTAAGTTGTAAAAGA
Found at i:64476425 original size:29 final size:29
Alignment explanation
Indices: 64476345--64476422 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
64476335 AATCTCAAAA
* * *
64476345 TTATACATGAATTTTGGTATAATGTGCAGTT
1 TTATACATGAATTTT-GAAT-TTGTGCAATT
64476376 TTATACATGAATTTTGAATTTGTGCAATT
1 TTATACATGAATTTTGAATTTGTGCAATT
*
64476405 TTATGCATGAAATTTTGA
1 TTATACATG-AATTTTGA
64476423 TTTAATCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 16 0.38
30 11 0.26
31 15 0.36
ACGTcount: A:0.31, C:0.06, G:0.17, T:0.46
Consensus pattern (29 bp):
TTATACATGAATTTTGAATTTGTGCAATT
Found at i:64477196 original size:3 final size:3
Alignment explanation
Indices: 64477188--64477212 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
64477178 GTGAGGAGTT
64477188 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
64477213 TATTATTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:64477217 original size:3 final size:3
Alignment explanation
Indices: 64477211--64477251 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
64477201 AATAATAATA
64477211 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
64477252 ATAATAGTAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:64482054 original size:25 final size:27
Alignment explanation
Indices: 64482017--64482069 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
64482007 TCAAACATGC
64482017 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
64482043 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
64482069 A
1 A
64482070 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:64486180 original size:40 final size:40
Alignment explanation
Indices: 64486072--64486281 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64486062 CGGGATTTAA
* * * * *
64486072 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64486112 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64486152 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64486192 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64486232 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64486272 CCGGATATAT
1 CCGGATATAT
64486282 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64489091 original size:40 final size:40
Alignment explanation
Indices: 64488995--64489191 Score: 290
Period size: 40 Copynumber: 5.0 Consensus size: 40
64488985 TCCGGATACG
* * * * * *
64488995 ACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGT-G
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCA
* * *
64489035 ACTTGCACAAAGGCCTTCGGGTCTTAGCCCGGATATATCA
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
64489075 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
64489115 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
64489155 ACTCGC-CGAATGCCTTCGGGTCTTAGCCCGGATATAT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT
64489192 TTCCAATGTT
Statistics
Matches: 144, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 32 0.22
40 112 0.78
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCA
Found at i:64497192 original size:40 final size:40
Alignment explanation
Indices: 64497084--64497293 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
64497074 CGGGATTTAA
* * * * *
64497084 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
64497124 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64497164 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64497204 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64497244 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
64497284 CCGGATATAT
1 CCGGATATAT
64497294 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:64500507 original size:40 final size:40
Alignment explanation
Indices: 64500381--64500530 Score: 160
Period size: 40 Copynumber: 3.8 Consensus size: 40
64500371 CACGATTTGG
* * * * *
64500381 ACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTTGC
1 ACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGC
64500421 ACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGC
1 AC-AATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGC
* * **
64500461 ACAATTGCCTTCGGGTCTTAACCCGGATATA-ATTTTCAGC
1 ACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACT-AGC
* * *
64500501 ATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 ACAATTGCCTTCGGGTCTTAGCCCGGATAT
64500531 CATTCAATTT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 4 0.04
40 89 0.94
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (40 bp):
ACAATTGCCTTCGGGTCTTAGCCCGGATATAGCTACTAGC
Found at i:64506350 original size:33 final size:32
Alignment explanation
Indices: 64506298--64506389 Score: 89
Period size: 32 Copynumber: 2.8 Consensus size: 32
64506288 TCAAGCCCGT
* *
64506298 TGGGCCAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCCAAGCCCTTTTCAGATAACAGTGAAAC
* *
64506329 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTTTTCAGATAACAGTGAAAC
*
64506361 TGGGCCTTAGCCCCTTATTCAGATAACAG
1 TGGGCC-AAG-CCCTT-TTCAGATAACAG
64506390 CACGGCCCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
31 7 0.14
32 17 0.35
33 15 0.31
34 10 0.20
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (32 bp):
TGGGCCAAGCCCTTTTCAGATAACAGTGAAAC
Found at i:64514340 original size:28 final size:28
Alignment explanation
Indices: 64514297--64514388 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
64514287 TGGGAACTAG
* *
64514297 TTGGGCCTGATGGGCCATGTGAATGTGA
1 TTGGGCCTGATGGGCCATGTGAACGAGA
*
64514325 TTGGGCCTGATAGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATGTGAACGAGA
* *
64514353 TTGGGCCTGTTGGGCCATGTGGACGAGA
1 TTGGGCCTGATGGGCCATGTGAACGAGA
64514381 TTGGGCCT
1 TTGGGCCT
64514389 AAAGGGGCCA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.17, C:0.17, G:0.39, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATGTGAACGAGA
Found at i:64514735 original size:27 final size:27
Alignment explanation
Indices: 64514705--64514988 Score: 346
Period size: 27 Copynumber: 10.6 Consensus size: 27
64514695 TAATAAAGAT
*
64514705 AAATTACCGAAATACCC-CTGATTTGTG
1 AAATTACCGAAATACCCTC-GATTTGTA
*
64514732 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
64514759 AAATTACCGAAATA-CCTCTAATTTGTA
1 AAATTACCGAAATACCCTC-GATTTGTA
**
64514786 AAATTACAAAAATACCCTCGA-TTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
64514812 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* *
64514839 AAATTATCGAAATA-CCTCGA-TTGTG
1 AAATTACCGAAATACCCTCGATTTGTA
**
64514864 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
**
64514891 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
*
64514918 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCTCGATTTGTA
* * *
64514945 AAATTACCAAAATACCCTTG-TAGTGTA
1 AAATTACCGAAATACCCTCGAT-TTGTA
* *
64514972 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
64514989 CTGTAGGGTA
Statistics
Matches: 223, Mismatches: 27, Indels: 14
0.84 0.10 0.05
Matches are distributed among these distances:
25 15 0.07
26 41 0.18
27 162 0.73
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCGAAATACCCTCGATTTGTA
Found at i:64514993 original size:27 final size:27
Alignment explanation
Indices: 64514941--64515005 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
64514931 ACCCTCAATT
* *
64514941 TGTAAAATTACCAAAATACCCTTGTAG
1 TGTAAAATGACCAAAATACCCCTGTAG
* *
64514968 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCAAAATACCCCTGTAG
*
64514995 GGTAAAATGAC
1 TGTAAAATGAC
64515006 TATTTTGCCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
TGTAAAATGACCAAAATACCCCTGTAG
Found at i:64521860 original size:28 final size:29
Alignment explanation
Indices: 64521792--64521898 Score: 137
Period size: 29 Copynumber: 3.7 Consensus size: 29
64521782 TATATATGTG
* *
64521792 AATTATTGAGCACTAAGTGTGCGAAGAAA
1 AATTATTGAGCACTAAGTGTGCAAAGTAA
*
64521821 AATTAACT-AGCACTAAGTGTGC-AAGTAA
1 AATT-ATTGAGCACTAAGTGTGCAAAGTAA
64521849 AATTATTGAGCACTAAGTGTGCAAAGTAA
1 AATTATTGAGCACTAAGTGTGCAAAGTAA
* * *
64521878 AACTATCGAGCATTAAGTGTG
1 AATTATTGAGCACTAAGTGTG
64521899 TGATCTCATT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.33
29 42 0.61
30 2 0.03
ACGTcount: A:0.40, C:0.12, G:0.21, T:0.26
Consensus pattern (29 bp):
AATTATTGAGCACTAAGTGTGCAAAGTAA
Found at i:64525879 original size:45 final size:45
Alignment explanation
Indices: 64525810--64525934 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
64525800 CTAGGAATTA
*
64525810 AGAAATCTGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
1 AGAAATCTGAACTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
* * * *
64525855 AGAAATCTGAACTTGTTGAATTGGTCCAAGTTCGTGGTATATGTG
1 AGAAATCTGAACTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
* *
64525900 A-AGCATC-CAAGCTCGTTGAGTTGGTCCGAGTTCGT
1 AGA-AATCTGAA-CTCGTTGAGTTGGTCCGAGTTCGT
64525935 AATGGATGCG
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.04
45 65 0.96
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (45 bp):
AGAAATCTGAACTCGTTGAGTTGGTCCGAGTTCGTGATATATGTG
Found at i:64528263 original size:37 final size:37
Alignment explanation
Indices: 64528206--64528278 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
64528196 TACGAAGTCT
64528206 TACCCGGACATAATCCCCACACGTAGTCATCGGGTCG
1 TACCCGGACATAATCCCCACACGTAGTCATCGGGTCG
* *
64528243 TACCTGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCCCCACACGTAGTCATCGGGTC
64528279 TCACCCAGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.22
Consensus pattern (37 bp):
TACCCGGACATAATCCCCACACGTAGTCATCGGGTCG
Found at i:64528430 original size:49 final size:49
Alignment explanation
Indices: 64528363--64528711 Score: 653
Period size: 49 Copynumber: 7.1 Consensus size: 49
64528353 TACCACATAT
* *
64528363 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64528412 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64528461 ATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64528510 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64528559 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64528608 ATATATATACAGTTTCACATTCATCACATTGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64528657 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64528706 ATATAT
1 ATATAT
64528712 TATTATGTAC
Statistics
Matches: 292, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 292 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (49 bp):
ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:64536578 original size:43 final size:43
Alignment explanation
Indices: 64536492--64536740 Score: 221
Period size: 43 Copynumber: 5.8 Consensus size: 43
64536482 ATATTGTACA
** * * * *
64536492 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAC-ATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTA-ATCG
** * * *
64536535 ATGCCTTTGTCCTAGACAGGGTCTTACACAAAATCTCTAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTAATCG
* *
64536578 ATGCCAATGTCCCAGACATGGTCTTACACGATATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTAATCG
* * *
64536621 ATGCCAACGTCCCAGACATCGTCTTACACGAAATCTCTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTAATCG
* ** * ** ** * *
64536664 ATGCCAGTGTCTTAGGCACAGTCTTACATTATATCTCAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTAATCG
** *
64536707 ATATCAATGTCCCAGACGTGGTCTTACACGAAAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAAT
64536741 GATACCTTGG
Statistics
Matches: 158, Mismatches: 47, Indels: 2
0.76 0.23 0.01
Matches are distributed among these distances:
43 157 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCTAATCG
Found at i:64537833 original size:2 final size:2
Alignment explanation
Indices: 64537826--64537850 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64537816 GAGACTAGTC
64537826 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
64537851 CATGTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64539886 original size:30 final size:30
Alignment explanation
Indices: 64539852--64539912 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64539842 TCCTTAACTC
64539852 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
64539882 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
64539912 A
1 A
64539913 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:64546754 original size:2 final size:2
Alignment explanation
Indices: 64546747--64546778 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
64546737 TTCGCATGGC
64546747 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
64546779 CAAATTTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:64547679 original size:56 final size:56
Alignment explanation
Indices: 64547594--64547722 Score: 242
Period size: 56 Copynumber: 2.3 Consensus size: 56
64547584 TCTTACATGT
*
64547594 AATCACAT-TCGATGCCTCTGTCCCAGATAGGGTCTTACTCGTAAACACATATTGA
1 AATCACATATCGATGCCACTGTCCCAGATAGGGTCTTACTCGTAAACACATATTGA
64547649 AATCACATATCGATGCCACTGTCCCAGATAGGGTCTTACTCGTAAACACATATTGA
1 AATCACATATCGATGCCACTGTCCCAGATAGGGTCTTACTCGTAAACACATATTGA
64547705 AATCACATATCGATGCCA
1 AATCACATATCGATGCCA
64547723 ACGTATTAAA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
55 8 0.11
56 64 0.89
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCACTGTCCCAGATAGGGTCTTACTCGTAAACACATATTGA
Found at i:64547851 original size:43 final size:43
Alignment explanation
Indices: 64547804--64548012 Score: 201
Period size: 43 Copynumber: 4.9 Consensus size: 43
64547794 TAATCACATT
* * *
64547804 TCGATGCCACTATCCCAGACAGGGTCTTACACGAAATCTCTAA
1 TCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCAAA
* * * *
64547847 TCGATG-CAGTGTCCCAAACACGGTCTTACACGATATCTCAAA
1 TCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCAAA
* * * * * *
64547889 TTGATGCCAACGTCCTAAAC-GTGGTCTTACATGAAATCTCTAA
1 TCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCTCAAA
* * * *
64547932 TCGATGTCAATTTCCTAGACATGGTCTTACAC-AATATCTCAAA
1 TCGATGCCAATGTCCCAGACAGGGTCTTACACGAA-ATCTCAAA
*
64547975 TCGATGCCAATGTCCCAGAC-GTGGTCTTACATGAAATC
1 TCGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATC
64548013 ATATTTTAGA
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
42 37 0.28
43 94 0.71
44 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
TCGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCTCAAA
Found at i:64547895 original size:85 final size:86
Alignment explanation
Indices: 64547804--64548012 Score: 271
Period size: 86 Copynumber: 2.4 Consensus size: 86
64547794 TAATCACATT
* * *
64547804 TCGATGCCACTATCCCAGACAG-GGTCTTACACGAAATCTCTAATCGATG-CAGTGTCCCAAACA
1 TCGATGCCACTGTCCCAGAC-GTGGTCTTACATGAAATCTCTAATCGATGTCAATGTCCCAAACA
*
64547867 CGGTCTTACACGATATCTCAAA
65 CGGTCTTACACAATATCTCAAA
* * * * * *
64547889 TTGATGCCAAC-GTCCTAAACGTGGTCTTACATGAAATCTCTAATCGATGTCAATTTCCTAGACA
1 TCGATGCC-ACTGTCCCAGACGTGGTCTTACATGAAATCTCTAATCGATGTCAATGTCCCAAACA
*
64547953 TGGTCTTACACAATATCTCAAA
65 CGGTCTTACACAATATCTCAAA
*
64547975 TCGATGCCAATGTCCCAGACGTGGTCTTACATGAAATC
1 TCGATGCCACTGTCCCAGACGTGGTCTTACATGAAATC
64548013 ATATTTTAGA
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
84 1 0.01
85 40 0.38
86 64 0.61
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (86 bp):
TCGATGCCACTGTCCCAGACGTGGTCTTACATGAAATCTCTAATCGATGTCAATGTCCCAAACAC
GGTCTTACACAATATCTCAAA
Found at i:64547936 original size:128 final size:129
Alignment explanation
Indices: 64547764--64548005 Score: 301
Period size: 128 Copynumber: 1.9 Consensus size: 129
64547754 ATATTGTACA
* * * *
64547764 ATGCCAACATCCCAAACGTGGTGTTACATGTAATCACATTTCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACATCCCAAACGTGGTCTTACATGAAATCACATATCGATGCCAATATCCCAGACAGGGT
* *
64547829 CTTACACGAA-ATCTCTAATCGATG-CAGTGTCCCAAACACGGTCTTACACGATATCTCAAATTG
66 CTTACAC-AATATCTCAAATCGATGCCAATGTCCCAAACACGGTCTTACACGATATCTCAAATTG
* * * * * * *
64547892 ATGCCAACGTCCTAAACGTGGTCTTACATGAAATCTC-TAATCGATGTCAATTTCCTAGACATGG
1 ATGCCAACATCCCAAACGTGGTCTTACATGAAATCACAT-ATCGATGCCAATATCCCAGACAGGG
* **
64547956 TCTTACACAATATCTCAAATCGATGCCAATGTCCCAGACGTGGTCTTACA
65 TCTTACACAATATCTCAAATCGATGCCAATGTCCCAAACACGGTCTTACA
64548006 TGAAATCATA
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
127 3 0.03
128 72 0.76
129 20 0.21
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (129 bp):
ATGCCAACATCCCAAACGTGGTCTTACATGAAATCACATATCGATGCCAATATCCCAGACAGGGT
CTTACACAATATCTCAAATCGATGCCAATGTCCCAAACACGGTCTTACACGATATCTCAAATTG
Found at i:64555583 original size:68 final size:66
Alignment explanation
Indices: 64555511--64555682 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
64555501 CATCATGTGT
* * * *
64555511 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
64555574 TGTAG
62 TGTAG
** * *
64555579 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
64555644 AG
65 AG
* * * *
64555646 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
64555683 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:64555616 original size:64 final size:64
Alignment explanation
Indices: 64555535--64555718 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
64555525 AGACATTATG
* * *
64555535 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
64555599 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64555664 AA
63 AA
* * *
64555666 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
64555719 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64559998 original size:68 final size:66
Alignment explanation
Indices: 64559923--64560094 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
64559913 CATCATGTGT
* * * *
64559923 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
64559986 TGTAG
62 TGTAG
** * *
64559991 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
64560056 AG
65 AG
* * * *
64560058 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
64560095 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:64560028 original size:64 final size:64
Alignment explanation
Indices: 64559947--64560130 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
64559937 AGACATTATG
* * *
64559947 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
64560011 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64560076 AA
63 AA
* * *
64560078 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
64560131 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64563291 original size:46 final size:45
Alignment explanation
Indices: 64563241--64563408 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 45
64563231 TTGAGCATCC
*
64563241 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * *
64563287 AACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCCG
* * *
64563333 AACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCG
*
64563378 AGCTCGTTGAGTTGAGTCCTGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCC-GAGTTCACTTA
64563409 GGGGTGGGTT
Statistics
Matches: 101, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 28 0.28
46 47 0.47
47 8 0.08
48 2 0.02
50 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCG
Found at i:64565893 original size:40 final size:39
Alignment explanation
Indices: 64565848--64566055 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
64565838 TCGGAATACA
*
64565848 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64565888 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64565928 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64565968 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
64566008 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64566048 CCGGATAT
1 CCGGATAT
64566056 CATTCAATTC
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64565988 original size:80 final size:81
Alignment explanation
Indices: 64565848--64566053 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
64565838 TCGGAATACA
* * *
64565848 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
64565912 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
64565928 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
64565991 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
64566008 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
64566054 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:64576146 original size:15 final size:17
Alignment explanation
Indices: 64576128--64576159 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64576118 TAGCATAATT
64576128 TACC-AACTCA-ATTCA
1 TACCAAACTCACATTCA
64576143 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
64576160 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 6 0.40
17 5 0.33
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:64578601 original size:40 final size:39
Alignment explanation
Indices: 64578556--64578763 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
64578546 CGGAATACAA
*
64578556 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64578596 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64578636 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64578676 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
64578716 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64578756 CCGGATAT
1 CCGGATAT
64578764 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64578696 original size:80 final size:81
Alignment explanation
Indices: 64578556--64578761 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
64578546 CGGAATACAA
* * *
64578556 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
64578620 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
64578636 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
64578699 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
64578716 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
64578762 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:64586602 original size:40 final size:39
Alignment explanation
Indices: 64586557--64586763 Score: 225
Period size: 40 Copynumber: 5.2 Consensus size: 39
64586547 CGGAATACAA
*
64586557 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64586597 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
64586637 CCGGATTTAACAACTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
* ** * *
64586676 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
64586716 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
64586756 CCGGATAT
1 CCGGATAT
64586764 CATTCAATTG
Statistics
Matches: 141, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 34 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:64586675 original size:79 final size:79
Alignment explanation
Indices: 64586557--64586762 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
64586547 CGGAATACAA
* *
64586557 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-CGACTTGCACAAAT
1 CCGGATATAACAAC-TGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACTAGCACAAAT
*
64586621 GCCTTCGGGTATTAGC
64 GCCTTCGGGTATTAAC
* * *
64586637 CCGGATTTAACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATTG
1 CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTAGCACAAATG
*
64586701 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
** ** * *
64586716 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACT-GCACGAATGCCTTCGGGTCTTAGCCCGGATA
64586763 TCATTCAATT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 2 0.02
79 67 0.62
80 39 0.36
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTAGCACAAATGC
CTTCGGGTATTAAC
Found at i:64592313 original size:27 final size:27
Alignment explanation
Indices: 64592291--64592462 Score: 227
Period size: 27 Copynumber: 6.4 Consensus size: 27
64592281 AGGGGCATTT
64592291 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* * * *
64592318 TAGTCATTTTACCACATGAGGGGAACA
1 CAGTCATTTTACCACATAAGGGCAAAA
*
64592345 CAGTTATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* * *
64592372 CAATCATGTTACCACATAAGAGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
64592399 TAGTAATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
64592426 CAATCATTTTACCACATAAAGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
*
64592453 AAGTCATTTT
1 CAGTCATTTT
64592463 GATCAGTCAG
Statistics
Matches: 121, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGCAAAA
Found at i:64592314 original size:54 final size:53
Alignment explanation
Indices: 64592249--64592425 Score: 169
Period size: 54 Copynumber: 3.3 Consensus size: 53
64592239 AAACATATAT
* ***
64592249 CACATAGGGGCAAAATAGTCAATTTA-ACATGTAGGGGCATTTCAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCAATTTACACATG-AGGGG-AACACAGTCATTTTAC
* *
64592303 CACATAAGGGCAAAATAGTCATTTTACCACATGAGGGGAACACAGTTATTTTAC
1 CACATAAGGGCAAAATAGTCAATTTA-CACATGAGGGGAACACAGTCATTTTAC
* * * * * * * *
64592357 CACATAAGGGCAAAACAATC-ATGTTACCACATAAGAGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCAAT-TTA-CACATGAGGGGAACACAGTCATTTTAC
64592411 CACATAAGGGCAAAA
1 CACATAAGGGCAAAA
64592426 CAATCATTTT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 94 0.90
55 5 0.05
56 5 0.05
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (53 bp):
CACATAAGGGCAAAATAGTCAATTTACACATGAGGGGAACACAGTCATTTTAC
Found at i:64593775 original size:16 final size:15
Alignment explanation
Indices: 64593749--64593778 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
64593739 AGAATACTCA
64593749 AAGCTGAATTCTAAG
1 AAGCTGAATTCTAAG
64593764 AAGCTAGAATTCTAA
1 AAGCT-GAATTCTAA
64593779 TTCAACACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (15 bp):
AAGCTGAATTCTAAG
Found at i:64598284 original size:197 final size:197
Alignment explanation
Indices: 64597942--64598307 Score: 588
Period size: 197 Copynumber: 1.9 Consensus size: 197
64597932 AATTAATTAT
* * *
64597942 CAAAATGGAAATGAAATGAGGTGATACGATGAGTTATATTTTGTTCATTTTATCTTAGTATGTGA
1 CAAAATGGAAATAAAATGAGATGATACGATGAGTTATATTTGGTTCATTTTATCTTAGTATGTGA
* * ** * *
64598007 TTCGTCACATTTTATGTATTGGTGATATGAACTATTCAGGTTTAATCATTTTGTATAGTTGAAAT
66 TTCATAACATAATATGTATTAGTGATATGAACTATTCAGGTTTAATCATTTCGTATAGTTGAAAT
** *
64598072 GATGAAATGGGACAAAAGATTGTTAATTCTATGTTATATATGATTTGTAAATTAAATAGTTAAGT
131 GATGAAAAAGGACAAAAGACTGTTAATTCTATGTTATATATGATTTGTAAATTAAATAGTTAAGT
64598137 AA
196 AA
* * *
64598139 CAAAATGGAAATAAAATGAGATGATATGATGAGTTATATTTGGTTGATTTTATCTTAGTATGTGG
1 CAAAATGGAAATAAAATGAGATGATACGATGAGTTATATTTGGTTCATTTTATCTTAGTATGTGA
64598204 TTCATAACATAATATGTATTAGTGATATGAACTATTCAGGTTTAATCATTTCGTATAGTTGAAAT
66 TTCATAACATAATATGTATTAGTGATATGAACTATTCAGGTTTAATCATTTCGTATAGTTGAAAT
*
64598269 GATGAAAAAGGACAAAGGACTGTTAATTCTATGTTATAT
131 GATGAAAAAGGACAAAAGACTGTTAATTCTATGTTATAT
64598308 TATATATGAT
Statistics
Matches: 153, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
197 153 1.00
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.39
Consensus pattern (197 bp):
CAAAATGGAAATAAAATGAGATGATACGATGAGTTATATTTGGTTCATTTTATCTTAGTATGTGA
TTCATAACATAATATGTATTAGTGATATGAACTATTCAGGTTTAATCATTTCGTATAGTTGAAAT
GATGAAAAAGGACAAAAGACTGTTAATTCTATGTTATATATGATTTGTAAATTAAATAGTTAAGT
AA
Found at i:64609904 original size:47 final size:49
Alignment explanation
Indices: 64609784--64609962 Score: 191
Period size: 47 Copynumber: 3.8 Consensus size: 49
64609774 TGTAACCCGC
* * * *
64609784 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--G-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
64609829 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
64609879 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
64609923 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
64609963 TCAACCATTC
Statistics
Matches: 113, Mismatches: 7, Indels: 23
0.79 0.05 0.16
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 5 0.04
45 34 0.30
46 3 0.03
47 58 0.51
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:64609951 original size:94 final size:92
Alignment explanation
Indices: 64609792--64609962 Score: 297
Period size: 94 Copynumber: 1.8 Consensus size: 92
64609782 GCCCATAAGT
* *
64609792 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
64609857 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
64609884 GAACTCGGACTCAACTCAACGAGTTCGGACATTCCACATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATT-CACATCCATAAGTGAACTCGGACTCAACTCA
64609949 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
64609963 TCAACCATTC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 27 0.36
93 3 0.04
94 44 0.59
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64613408 original size:46 final size:43
Alignment explanation
Indices: 64613317--64613545 Score: 183
Period size: 46 Copynumber: 5.0 Consensus size: 43
64613307 AGCTCTCATC
* * *
64613317 CATCT-GTGTCGATGCCGTGTCCCAGACAGGTCTTACACT-GACA
1 CATCTCGTGCCGATG-CATGTCCCAGACATGTCTTACACTAG-CA
* *
64613360 CATGTAACCGTGCTGATGCATGTCCCAGACATGTCTTACACTAGCA
1 CATCT---CGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
* * *
64613406 CATCTCGTAGCCGACGCATGTCCCAGACATGTCTGACACTGGCTA
1 CATCTCGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-A
* *
64613451 TCATCTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCT
1 -CATCTCG-TGCCGATGCATGTCCCAGACATGTCTTACACTAG--CA
* * * * *
64613498 CGTCTCAATGCCGATGCCATGTCTCATACATGGTCTTACACTGGCA
1 CATCTC-GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCA
64613544 CA
1 CA
64613546 CAAATCTCAT
Statistics
Matches: 149, Mismatches: 23, Indels: 25
0.76 0.12 0.13
Matches are distributed among these distances:
43 7 0.05
44 30 0.20
45 1 0.01
46 79 0.53
47 20 0.13
48 12 0.08
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (43 bp):
CATCTCGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
Found at i:64613436 original size:44 final size:44
Alignment explanation
Indices: 64613334--64613494 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
64613324 GTCGATGCCG
* * *
64613334 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGATGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGATGCA
*
64613380 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
* *
64613424 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGATGCA
64613470 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
64613495 CCTCGTCTCA
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 3 0.03
44 30 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGATGCA
Found at i:64616068 original size:47 final size:49
Alignment explanation
Indices: 64615989--64616122 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 49
64615979 TGTAACCCGC
* *
64615989 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
64616039 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT-CACAT
*
64616083 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
64616123 TCAACCATTC
Statistics
Matches: 71, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
42 2 0.03
43 1 0.01
44 5 0.07
45 1 0.01
46 2 0.03
47 57 0.80
48 2 0.03
49 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:64624987 original size:27 final size:27
Alignment explanation
Indices: 64624957--64625063 Score: 160
Period size: 27 Copynumber: 4.0 Consensus size: 27
64624947 AATCTCATAT
* *
64624957 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
64624984 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
64625011 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
**
64625038 CTGTAGGGTAGAATTACCAAAATACC
1 CTGTAGGGTAGAATTACTGAAATACC
64625064 ATTAGTTTAC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:64625079 original size:27 final size:27
Alignment explanation
Indices: 64625049--64625147 Score: 101
Period size: 27 Copynumber: 3.6 Consensus size: 27
64625039 TGTAGGGTAG
*
64625049 AATTACCAAAATACCATTAGTTTACAA
1 AATTACCAAAATACCCTTAGTTTACAA
* * *
64625076 AATTACCACAATACCCCTAGTTTGTC-A
1 AATTACCAAAATACCCTTAGTTT-ACAA
* **
64625103 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTACAA
*
64625130 AATTTCCAAAATATCCCT
1 AATTACCAAAATA-CCCT
64625148 GATTCGTGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
27 54 0.92
28 5 0.08
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTACAA
Found at i:64625159 original size:27 final size:27
Alignment explanation
Indices: 64625049--64625205 Score: 81
Period size: 27 Copynumber: 5.8 Consensus size: 27
64625039 TGTAGGGTAG
* *
64625049 AATTACCAAAATACCATTAGTTTAC--AA
1 AATTACCAAAATACCCTT-GATT-CGTAA
* * * *
64625076 AATTACCACAATACCCCT-AGTTTGTCA
1 AATTACCAAAATACCCTTGA-TTCGTAA
* *
64625103 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTCGTAA
* *
64625130 AATTTCCAAAATATCCC-TGATTCGTGA
1 AATTACCAAAATA-CCCTTGATTCGTAA
* * * **
64625157 AATTATCGAAACACCCTCCACTT-GTAA
1 AATTACCAAAATACCCTTGA-TTCGTAA
* *
64625184 AATTACCAAAGTACCCTCGATT
1 AATTACCAAAATACCCTTGATT
64625206 TATAGAATTA
Statistics
Matches: 97, Mismatches: 26, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
26 7 0.07
27 85 0.88
28 5 0.05
ACGTcount: A:0.38, C:0.24, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTCGTAA
Found at i:64625160 original size:54 final size:54
Alignment explanation
Indices: 64625049--64625161 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
64625039 TGTAGGGTAG
* *
64625049 AATTACCAAAATACCATTAGTTTACAAAATTACCACAATACCCCTAGTTTGTCA
1 AATTACCAAAATACCATTAGTTTACAAAATTACCAAAATACCCCTAGTTCGTCA
* * ** * * *
64625103 AATTACCAAAATACCCTTGGTTTGTAAAATTTCCAAAATATCCCT-GATTCGTGA
1 AATTACCAAAATACCATTAGTTTACAAAATTACCAAAATACCCCTAG-TTCGTCA
64625157 AATTA
1 AATTA
64625162 TCGAAACACC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.02
54 48 0.98
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (54 bp):
AATTACCAAAATACCATTAGTTTACAAAATTACCAAAATACCCCTAGTTCGTCA
Found at i:64625268 original size:27 final size:27
Alignment explanation
Indices: 64625238--64625372 Score: 198
Period size: 27 Copynumber: 5.0 Consensus size: 27
64625228 CGATTTACAA
* *
64625238 AATTATTAAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
*
64625265 AATTATTGAAATACCCCTATAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
*
64625292 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
* *
64625319 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
* *
64625346 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCCTGTAGGGTAG
64625373 TGTAACACCC
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTATTGAAATACCCCTGTAGGGTAG
Found at i:64626887 original size:39 final size:39
Alignment explanation
Indices: 64626797--64626964 Score: 246
Period size: 39 Copynumber: 4.3 Consensus size: 39
64626787 CCGATTATGG
* * *
64626797 TAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
*
64626837 TAACTCACACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
*
64626876 TAGCTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
* *
64626915 CAATTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
* *
64626954 CAATTCGCACA
1 TAACTCGCACA
64626965 TTCATTCACA
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 99 0.83
40 20 0.17
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
TAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
Found at i:64629160 original size:22 final size:22
Alignment explanation
Indices: 64629100--64629164 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
64629090 GCCAATTATT
*
64629100 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
* *
64629122 CT-ACATATAGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
64629144 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
64629165 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:64629503 original size:6 final size:6
Alignment explanation
Indices: 64629494--64629599 Score: 58
Period size: 6 Copynumber: 17.3 Consensus size: 6
64629484 TTGCATTCAT
* * * *
64629494 ATTCTG ATTCTG ATTTTG -TTACTTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
64629544 ATTTTG ATTCTG ATTTTA ATTCTG ATTCTG ATTCTTG -TTTTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG
64629591 AGTTCTG AT
1 A-TTCTG AT
64629600 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 16, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
5 6 0.08
6 58 0.78
7 8 0.11
8 2 0.03
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (6 bp):
ATTCTG
Found at i:64629525 original size:25 final size:25
Alignment explanation
Indices: 64629497--64629560 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
64629487 CATTCATATT
* * *
64629497 CTGATTCTGATTTTGTTACTTGATA
1 CTGATTCTGATTTTGTCACCTAATA
* *
64629522 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTTTGTCACCTAATA
*
64629547 TTGATTCTGATTTT
1 CTGATTCTGATTTT
64629561 AATTCTGATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.52
Consensus pattern (25 bp):
CTGATTCTGATTTTGTCACCTAATA
Found at i:64629587 original size:18 final size:18
Alignment explanation
Indices: 64629542--64629590 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
64629532 TTCTGTCACC
64629542 TAATTTTGATTCTGATTT
1 TAATTTTGATTCTGATTT
*
64629560 TAATTCTGATTCTGATTCT
1 TAATTTTGATTCTGATT-T
*
64629579 T-GTTTTGATTCT
1 TAATTTTGATTCT
64629591 AGTTCTGATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.18, C:0.10, G:0.12, T:0.59
Consensus pattern (18 bp):
TAATTTTGATTCTGATTT
Found at i:64632656 original size:40 final size:40
Alignment explanation
Indices: 64632601--64632681 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
64632591 ATCACCAGAA
64632601 TAGGGTTAAAGGCATATCCAGACAAATCAAAACATTTAAC
1 TAGGGTTAAAGGCATATCCAGACAAATCAAAACATTTAAC
*
64632641 TAGGGTTAAAGGCATATCCAGACAAATCGAAACATTTAAC
1 TAGGGTTAAAGGCATATCCAGACAAATCAAAACATTTAAC
64632681 T
1 T
64632682 TTCATTTCAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.43, C:0.17, G:0.16, T:0.23
Consensus pattern (40 bp):
TAGGGTTAAAGGCATATCCAGACAAATCAAAACATTTAAC
Found at i:64634015 original size:42 final size:43
Alignment explanation
Indices: 64633928--64634021 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 43
64633918 TAAGACGTTT
* * * *
64633928 TCTTACATGCAATCAAACATCGATGCCGCTGTATCAGATAGGG
1 TCTTACACGAAATCAAACATCGATGCCGATGTATCAGACAGGG
* * * *
64633971 TCTTACACGAAATCAAATA-CGATGTCGATGTCTCAGACATGG
1 TCTTACACGAAATCAAACATCGATGCCGATGTATCAGACAGGG
64634013 TCTTACACG
1 TCTTACACG
64634022 TAAAACAGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 27 0.63
43 16 0.37
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (43 bp):
TCTTACACGAAATCAAACATCGATGCCGATGTATCAGACAGGG
Found at i:64639632 original size:29 final size:27
Alignment explanation
Indices: 64639574--64639625 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
64639564 CAAAAGTGAA
* *
64639574 TTTTAGGGTTTAAAGGATTTTAAGATG
1 TTTTAGGGGTTAAAGGATCTTAAGATG
64639601 TTTTGAGGGGTTAAAGGA-CTTAAGA
1 TTTT-AGGGGTTAAAGGATCTTAAGA
64639626 AATGTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (27 bp):
TTTTAGGGGTTAAAGGATCTTAAGATG
Found at i:64648552 original size:87 final size:88
Alignment explanation
Indices: 64648405--64648577 Score: 237
Period size: 87 Copynumber: 2.0 Consensus size: 88
64648395 TCACATTTCA
* *
64648405 ATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATCAGAATCACATATCGATGCCATGG
1 ATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATCAGAATCACACATCAATGCCATGG
* *
64648470 TCTTACTCGCACATCATATATTG
66 TCTTACTCACACATCACATATTG
* *
64648493 ATGCCAACGTATTAAA-GTGGTCTTACTCGCGA-ACATATAT-AGGAATCA-AGCATCAATGCCA
1 ATGCCAACGTATAAAACGTGGACTTACTCGC-ACACATATATCA-GAATCACA-CATCAATGCCA
64648554 TGGTCTTACTCACACATCACATAT
63 TGGTCTTACTCACACATCACATAT
64648578 CGGAATTCAC
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
86 2 0.03
87 58 0.76
88 16 0.21
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (88 bp):
ATGCCAACGTATAAAACGTGGACTTACTCGCACACATATATCAGAATCACACATCAATGCCATGG
TCTTACTCACACATCACATATTG
Found at i:64660873 original size:25 final size:25
Alignment explanation
Indices: 64660843--64660930 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
64660833 AATCAAAATG
*
64660843 AGAATCATAATCAAAATCAGGTGAC
1 AGAATCAGAATCAAAATCAGGTGAC
*
64660868 AGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAAAATCAGGTGAC
* ** * * *
64660893 AGAATTAGAATCAGTATCAGTTAAT
1 AGAATCAGAATCAAAATCAGGTGAC
64660918 AGAATCAGAATCA
1 AGAATCAGAATCA
64660931 GAATGTGAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (25 bp):
AGAATCAGAATCAAAATCAGGTGAC
Found at i:64661088 original size:27 final size:26
Alignment explanation
Indices: 64661052--64661167 Score: 144
Period size: 27 Copynumber: 4.4 Consensus size: 26
64661042 AGAATGGCTC
* *
64661052 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
64661078 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
64661105 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
64661132 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
*
64661159 CTA-AACAGA
1 CCAGAACAGA
64661168 ATACGTGGCA
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
25 6 0.07
26 12 0.15
27 55 0.68
28 8 0.10
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:64661844 original size:26 final size:26
Alignment explanation
Indices: 64661756--64661868 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
64661746 GGGCAAAATG
* * * *
64661756 GTAATTTTACCCCATAAGGGTATCTCG
1 GTAATTCTACCCTA-AAGGGTATTTCA
* *
64661783 GTAATTCTACCCTATAGGGATATTTCG
1 GTAATTCTACCCTAAAGGG-TATTTCA
*
64661810 GTATTTCTACCCTAAAGGGTATTTCA
1 GTAATTCTACCCTAAAGGGTATTTCA
*
64661836 GTAACTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTA-AAGGGTATTTCA
64661863 GTAATT
1 GTAATT
64661869 TTATAAATTG
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.30
27 52 0.70
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.35
Consensus pattern (26 bp):
GTAATTCTACCCTAAAGGGTATTTCA
Found at i:64661882 original size:27 final size:27
Alignment explanation
Indices: 64661852--64661950 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
64661842 CTACCCTACA
64661852 AGGGTATTTCAGTAATTTTATAAATTG
1 AGGGTATTTCAGTAATTTTATAAATTG
*** * * * *
64661879 AGGGTAAAACGGTAACTCTATAAATCG
1 AGGGTATTTCAGTAATTTTATAAATTG
* * *
64661906 -GGAGTACTTT-GGTAATTTTACAAGTTG
1 AGG-GTA-TTTCAGTAATTTTATAAATTG
64661933 AGGGTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
64661951 GGTAAACTAA
Statistics
Matches: 52, Mismatches: 16, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
26 5 0.10
27 45 0.87
28 2 0.04
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTATAAATTG
Found at i:64663330 original size:43 final size:43
Alignment explanation
Indices: 64663282--64663442 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 43
64663272 AGAACATATA
*
64663282 CAATGCAAACGTCCCAGACATGGTCTTACATGTAATCA-AACAT
1 CAATGC-AACGTCCCAGACATGGTCTTACACGTAATCAGAACAT
* * * *
64663325 CAATGCCACTATCCCAGACAAGGTCTTACACGAAATCAGATACGAT
1 CAATGCAAC-GTCCCAGACATGGTCTTACACGTAATCAGA-AC-AT
* * *
64663371 -ATTG-AA-GTCCCAGACATGGTCTTACACGTAAAACAGAA-GT
1 CAATGCAACGTCCCAGACATGGTCTTACACGT-AATCAGAACAT
* *
64663411 CGATGCCAACGTCCCAGACGTGGTCTTACACG
1 CAATG-CAACGTCCCAGACATGGTCTTACACG
64663443 AAAATACTTA
Statistics
Matches: 94, Mismatches: 15, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 23 0.24
43 38 0.40
44 23 0.24
45 5 0.05
46 2 0.02
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (43 bp):
CAATGCAACGTCCCAGACATGGTCTTACACGTAATCAGAACAT
Found at i:64674408 original size:24 final size:25
Alignment explanation
Indices: 64674353--64674415 Score: 83
Period size: 24 Copynumber: 2.5 Consensus size: 25
64674343 GAGTCATGGT
* *
64674353 CGGTAAGCTCTTACTGAGCTGATAAA
1 CGGTAAGCTC-TATTAAGCTGATAAA
*
64674379 CAGTAAGCTCTATTAAGCTGA-AAA
1 CGGTAAGCTCTATTAAGCTGATAAA
64674403 CGGTAAGCTCTAT
1 CGGTAAGCTCTAT
64674416 GAGTTAAACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 15 0.45
25 9 0.27
26 9 0.27
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (25 bp):
CGGTAAGCTCTATTAAGCTGATAAA
Found at i:64674429 original size:21 final size:24
Alignment explanation
Indices: 64674355--64674434 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 24
64674345 GTCATGGTCG
* *
64674355 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTAAGCTG-TAAACA
* *
64674381 GTAAGCTCTATTAAGCTGAAAACG
1 GTAAGCTCTATTAAGCTGTAAACA
*
64674405 GTAAGCTCTA-TGAG-T-TAAACA
1 GTAAGCTCTATTAAGCTGTAAACA
64674426 GTAAGCTCT
1 GTAAGCTCT
64674435 TTTGAACAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
21 13 0.28
22 1 0.02
23 3 0.06
24 14 0.30
25 8 0.17
26 8 0.17
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (24 bp):
GTAAGCTCTATTAAGCTGTAAACA
Found at i:64674479 original size:46 final size:47
Alignment explanation
Indices: 64674352--64674481 Score: 133
Period size: 45 Copynumber: 2.8 Consensus size: 47
64674342 CGAGTCATGG
* * * *
64674352 TCGGTAAGCTCTTACTGAGCTGATAAACAGTAAGCTCTATTAAGCTGAAA
1 TCGGTAAGCTC-CAATGAGCT-A-AAACAGTAAGCTCTTTTAAGCAGAAA
* * *
64674402 ACGGTAAGCT-CTATGAG-TTAAACAGTAAGCTCTTTTGAA-CAG-AA
1 TCGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTTT-AAGCAGAAA
64674446 TCGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTT
1 TCGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTT
64674482 ACAAGCTATG
Statistics
Matches: 67, Mismatches: 10, Indels: 10
0.77 0.11 0.11
Matches are distributed among these distances:
44 11 0.16
45 24 0.36
46 18 0.27
47 1 0.01
48 4 0.06
50 9 0.13
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (47 bp):
TCGGTAAGCTCCAATGAGCTAAAACAGTAAGCTCTTTTAAGCAGAAA
Found at i:64678222 original size:19 final size:19
Alignment explanation
Indices: 64678198--64678240 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
64678188 TTCGCTGTAT
*
64678198 GGCGTGCTTGTTTGGGTTG
1 GGCGTGCTCGTTTGGGTTG
64678217 GGCGTGCTCGTTTGGGTTG
1 GGCGTGCTCGTTTGGGTTG
64678236 GGCGT
1 GGCGT
64678241 CGGCTAAGAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.49, T:0.37
Consensus pattern (19 bp):
GGCGTGCTCGTTTGGGTTG
Found at i:64678612 original size:27 final size:27
Alignment explanation
Indices: 64678554--64678975 Score: 253
Period size: 27 Copynumber: 15.7 Consensus size: 27
64678544 TTAGTTTACC
** * * *
64678554 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
64678581 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* **** *
64678608 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * ****
64678635 GAATTATCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTATA
* ***** * *
64678662 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* * *** *
64678689 GAATTACTATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTATA
* *
64678716 AAATTACTAAAATACCCTC-AGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTATA
*
64678743 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCGATTTA-TA
* * *
64678770 AAATTACCAAAATACCCTAG-TCTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * * * *
64678796 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* * *
64678823 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
* *
64678850 AAATTACCAAAATACCC-CAAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTATA
* * *
64678877 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTATA
* * *
64678904 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTATA
*
64678931 AAATTACCAAAATACCC-CTGATTTAAA
1 AAATTACCAAAATACCCTC-GATTTATA
*
64678958 AAATTACAAAAATACCCT
1 AAATTACCAAAATACCCT
64678976 TGACTTTCTA
Statistics
Matches: 330, Mismatches: 54, Indels: 21
0.81 0.13 0.05
Matches are distributed among these distances:
26 28 0.08
27 300 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTATA
Found at i:64678773 original size:54 final size:54
Alignment explanation
Indices: 64678701--64678975 Score: 279
Period size: 54 Copynumber: 5.1 Consensus size: 54
64678691 ATTACTATTT
* ** * **
64678701 TACCCTCGATTTACAAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
* ** * * *
64678755 TACCCTCGATCAGTAAAATTACCAAAATACCCT-AGTCTGTAAAATTGCTAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
*** * *
64678808 TACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
* * *
64678862 TACCC-CAAGTTTGTAAAATTACCAAAATACCACT-GGTTTGTGAAATTACCGAAA
1 TACCCTCAA-TTTGTAAAATTACCAAAATACC-CTCAGTTTGTAAAATTACCAAAA
* ** *
64678916 TACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTAAAAAATTACAAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCTCAG-TTTGTAAAATTACCAAAA
64678970 TACCCT
1 TACCCT
64678976 TGACTTTCTA
Statistics
Matches: 182, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
53 45 0.25
54 132 0.73
55 5 0.03
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTACCAAAA
Found at i:64678961 original size:81 final size:81
Alignment explanation
Indices: 64678710--64678975 Score: 324
Period size: 81 Copynumber: 3.3 Consensus size: 81
64678700 TTACCCTCGA
* * ** * * **
64678710 TTTACAAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATT
1 TTTATAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
64678775 ACCAAAATA-CCCT-AG
65 ACCAAAATACCCCTGAG
* * *
64678790 TCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
1 TTTATAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
*
64678855 ACCAAAATACCCC-AAG
65 ACCAAAATACCCCTGAG
* * *
64678871 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATT
1 TTTATAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATT
64678936 ACCAAAATACCCCTGA-
65 ACCAAAATACCCCTGAG
* *
64678952 TTTAAAAAATTACAAAAATACCCT
1 TTTATAAAATTACTAAAATACCCT
64678976 TGACTTTCTA
Statistics
Matches: 162, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
80 63 0.39
81 97 0.60
82 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
TTTATAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTA
CCAAAATACCCCTGAG
Found at i:64678999 original size:29 final size:27
Alignment explanation
Indices: 64678930--64679002 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
64678920 CTCAATTTGT
*
64678930 AAAATTACCAAAATACCCCTGATTTAA
1 AAAATTACAAAAATACCCCTGATTTAA
* *
64678957 AAAATTACAAAAATACCCTTGACTTTCTA
1 AAAATTACAAAAATACCCCTGA-TTT-AA
* *
64678986 AAAATTATAGAAATACC
1 AAAATTACAAAAATACC
64679003 ATTGGTTTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 20 0.51
28 3 0.08
29 16 0.41
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.27
Consensus pattern (27 bp):
AAAATTACAAAAATACCCCTGATTTAA
Found at i:64679129 original size:27 final size:27
Alignment explanation
Indices: 64679092--64679156 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
64679082 CCCCTATTAG
*
64679092 GGTAAAGTGACCGTAA-AGCCCCTGTAA
1 GGTAAAATGACCGTAATA-CCCCTGTAA
*
64679119 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAA
64679146 GGTAAAATGAC
1 GGTAAAATGAC
64679157 GAATATGCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAA
Found at i:64680429 original size:20 final size:20
Alignment explanation
Indices: 64680399--64680469 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
64680389 GATTTGATAA
64680399 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64680419 ACATG-TCATGTATGATATGC
1 ACATGAT-ATGTATGATATGC
*
64680439 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
*
64680459 ACATGAGATGT
1 ACATGATATGT
64680470 TCATAAATGC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64680618 original size:25 final size:24
Alignment explanation
Indices: 64680516--64680704 Score: 303
Period size: 25 Copynumber: 7.9 Consensus size: 24
64680506 AGGAAGTGCA
64680516 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
64680539 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
64680562 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
64680585 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
64680610 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
64680635 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
64680660 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
64680684 AAAGGGCTTTTGCCCCAGTTA
1 AAAGGGCTTATGCCCCAGTTA
64680705 CTAAAAGAGG
Statistics
Matches: 160, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
23 68 0.43
24 21 0.13
25 71 0.44
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:64683184 original size:28 final size:27
Alignment explanation
Indices: 64683152--64683206 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
64683142 ATAGCCTCAT
64683152 GTGGGCCTT-AGCCCAATAACAGAATCAG
1 GTGGG-CTTAAGCCCAAT-ACAGAATCAG
*
64683180 GTGGGCTTAAGTCCAATACAGAATCAG
1 GTGGGCTTAAGCCCAATACAGAATCAG
64683207 TATCAGATGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
GTGGGCTTAAGCCCAATACAGAATCAG
Found at i:64683651 original size:27 final size:27
Alignment explanation
Indices: 64683621--64683676 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
64683611 GAGCATAATC
*
64683621 GTCATTCTAC-CATATAGGGGTATTACG
1 GTCATTCTACAC-TATAAGGGTATTACG
* *
64683648 GTCATTTTACACTATAAGGGTATTTCG
1 GTCATTCTACACTATAAGGGTATTACG
64683675 GT
1 GT
64683677 GATTTTATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTCTACACTATAAGGGTATTACG
Found at i:64684248 original size:28 final size:27
Alignment explanation
Indices: 64684217--64684269 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
64684207 ACAGTATCAT
64684217 GTGGGCCTT-AGCCCAATAACAGAATCCG
1 GTGGG-CTTAAGCCCAAT-ACAGAATCCG
*
64684245 GTGGGCTTAAGTCCAATACAGAATC
1 GTGGGCTTAAGCCCAATACAGAATC
64684270 AGTATCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (27 bp):
GTGGGCTTAAGCCCAATACAGAATCCG
Found at i:64685353 original size:28 final size:28
Alignment explanation
Indices: 64685297--64685362 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
64685287 CCATCGCAGA
* *
64685297 AACAGCATCATGTGGGCCTTAGCCTAAT
1 AACAGAATCAGGTGGGCCTTAGCCTAAT
64685325 AACAGAATCAGGTGGG-CTTAAGTCC-AAT
1 AACAGAATCAGGTGGGCCTT-AG-CCTAAT
64685353 -ACAGAATCAG
1 AACAGAATCAG
64685363 TATCAGATGC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 13 0.38
28 19 0.56
29 2 0.06
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTTAGCCTAAT
Found at i:64685809 original size:27 final size:27
Alignment explanation
Indices: 64685779--64685834 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
64685769 GAGCATAATC
*
64685779 GTCATTCTAC-CATATAGGGGTATTACG
1 GTCATTCTACAC-TATAAGGGTATTACG
* *
64685806 GTCATTTTACACTATAAGGGTATTTCG
1 GTCATTCTACACTATAAGGGTATTACG
64685833 GT
1 GT
64685835 GATTTTATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTCTACACTATAAGGGTATTACG
Found at i:64700075 original size:11 final size:11
Alignment explanation
Indices: 64700039--64700068 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64700029 ATCCTTGAGT
64700039 TTTTATTTTTA
1 TTTTATTTTTA
*
64700050 TTTTATTTTTG
1 TTTTATTTTTA
64700061 TTTTATTT
1 TTTTATTT
64700069 ATTTTTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:64700076 original size:16 final size:16
Alignment explanation
Indices: 64700045--64700074 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
64700035 GAGTTTTTAT
64700045 TTTTATTTTATTTTTG
1 TTTTATTTTATTTTTG
64700061 TTTTA-TTTATTTTT
1 TTTTATTTTATTTTT
64700075 TGAAGACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTATTTTATTTTTG
Found at i:64704210 original size:53 final size:53
Alignment explanation
Indices: 64704114--64704228 Score: 169
Period size: 53 Copynumber: 2.2 Consensus size: 53
64704104 GGTCATAATC
* * *
64704114 GTCATTTTACCGTACAGGGATATTATGGTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACA-GGGCACTACG
* *
64704168 GTCATTTTACCCTACAGGG-CATTACGGTCATTTTACCCTACAGGGTATTACG
1 GTCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACAGGGCACTACG
64704220 GTCATTTTA
1 GTCATTTTA
64704229 TGTGACAGCC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 17 0.30
53 21 0.38
54 18 0.32
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (53 bp):
GTCATTTTACCCTACAGGGACATTACGGTCATTTTACCCTACAGGGCACTACG
Found at i:64704236 original size:26 final size:26
Alignment explanation
Indices: 64704114--64704228 Score: 167
Period size: 26 Copynumber: 4.3 Consensus size: 26
64704104 GGTCATAATC
* * *
64704114 GTCATTTTACCGTACAGGGATATTATG
1 GTCATTTTACCCTACAGGG-CATTACG
*
64704141 GTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACA-GGGCATTACG
64704168 GTCATTTTACCCTACAGGGCATTACG
1 GTCATTTTACCCTACAGGGCATTACG
*
64704194 GTCATTTTACCCTACAGGGTATTACG
1 GTCATTTTACCCTACAGGGCATTACG
64704220 GTCATTTTA
1 GTCATTTTA
64704229 TGTGACAGCC
Statistics
Matches: 81, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 43 0.53
27 35 0.43
28 3 0.04
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (26 bp):
GTCATTTTACCCTACAGGGCATTACG
Found at i:64705972 original size:40 final size:40
Alignment explanation
Indices: 64705913--64706054 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
64705903 AAATTGAATG
* * *
64705913 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
64705953 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
64705993 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
64706033 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
64706055 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:64706055 original size:40 final size:39
Alignment explanation
Indices: 64705952--64706080 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
64705942 TGCTGGAAAT
* * *
64705952 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
64705992 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
64706032 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
64706072 TATATCCGG
1 TATATCCGG
64706081 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:64713867 original size:40 final size:40
Alignment explanation
Indices: 64713801--64713943 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
64713791 AAATTGAATG
* * *
64713801 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
64713840 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
64713880 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG-TTTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
64713919 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
64713944 TTTGTGCACG
Statistics
Matches: 87, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 40 0.46
40 47 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:64713934 original size:39 final size:39
Alignment explanation
Indices: 64713839--64713950 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
64713829 TGCTGGAAAT
* *
64713839 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGGC
**
64713879 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-TT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGGC
*
64713918 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
64713951 ACGTGATTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
39 32 0.49
40 33 0.51
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGGC
Found at i:64718004 original size:40 final size:39
Alignment explanation
Indices: 64717839--64718022 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
64717829 AAATTGAATG
* * *
64717839 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
64717879 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
64717919 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
64717959 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
64717998 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
64718023 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:64718047 original size:80 final size:81
Alignment explanation
Indices: 64717879--64718067 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
64717869 GCTGGAAATT
* * * *
64717879 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
64717944 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
64717960 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
64718023 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
64718039 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
64718068 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:64726116 original size:40 final size:39
Alignment explanation
Indices: 64725951--64726134 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
64725941 AAATTGAATG
* * *
64725951 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
64725991 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
64726031 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
64726071 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
64726110 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
64726135 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:64726159 original size:80 final size:81
Alignment explanation
Indices: 64725991--64726179 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
64725981 GCTGGAAATT
* * * *
64725991 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
64726056 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
64726072 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
64726135 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
64726151 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
64726180 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:64734846 original size:29 final size:28
Alignment explanation
Indices: 64734812--64734914 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
64734802 TACTCAATCA
*
64734812 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
64734841 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
64734870 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
64734899 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
64734915 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:64741389 original size:40 final size:40
Alignment explanation
Indices: 64741333--64741717 Score: 497
Period size: 40 Copynumber: 9.6 Consensus size: 40
64741323 TATTCGGATG
*
64741333 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64741373 GTATCCGGGCTAAGTCCC-AAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
64741415 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64741455 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64741495 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64741535 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
64741578 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64741618 ATATCCGGGCTAAGTCCCG-AGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64741657 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64741697 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64741718 ATACTTGGGT
Statistics
Matches: 306, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
39 62 0.20
40 172 0.56
41 1 0.00
42 22 0.07
43 49 0.16
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:64741643 original size:162 final size:163
Alignment explanation
Indices: 64741333--64741717 Score: 686
Period size: 162 Copynumber: 2.4 Consensus size: 163
64741323 TATTCGGATG
* * *
64741333 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTGTATCCGGGCTAAGTCCC-AAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
*
64741397 TTTGTGTGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
66 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
64741462 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
131 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
64741495 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
64741560 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
66 TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
64741625 GGCTAAGTCCCG-AGGCATTTATGCTAGTGACT
131 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
64741657 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAG
64741718 ATACTTGGGT
Statistics
Matches: 215, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
161 14 0.07
162 119 0.55
163 82 0.38
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (163 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCG
GGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:64749665 original size:40 final size:40
Alignment explanation
Indices: 64749610--64750020 Score: 570
Period size: 40 Copynumber: 10.1 Consensus size: 40
64749600 TATTCGGATG
*
64749610 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
64749650 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64749690 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
64749733 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
64749773 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64749813 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
64749853 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
64749896 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
64749936 CTATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
64749976 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
64750016 ATATC
1 ATATC
64750021 TAGCTAAATC
Statistics
Matches: 334, Mismatches: 31, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
40 258 0.77
41 2 0.01
43 74 0.22
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:64749835 original size:123 final size:121
Alignment explanation
Indices: 64749610--64750020 Score: 571
Period size: 123 Copynumber: 3.4 Consensus size: 121
64749600 TATTCGGATG
* * *
64749610 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
* *
64749675 TTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
66 TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A-TAGTTGCT
* * *
64749733 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACAATATCCAGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
* * *
64749798 TTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-AGTTACT
66 TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
*
64749853 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAGTTACTATACCCGGGCTAAGTCCCGAA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-G--ACTATATCCGGGCTAAGTCCCGAA
* *
64749917 GGCATTTGTGCTAGTGACTCTATCCGGGCTAAGTCCCGAAGGCATTTATGC-TAG-TGACT
62 GGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTG-CT
* *
64749976 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTATATC
64750021 TAGCTAAATC
Statistics
Matches: 257, Mismatches: 23, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
119 1 0.00
120 45 0.18
121 1 0.00
122 2 0.01
123 207 0.81
124 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCATAGTTGCT
Found at i:64749891 original size:163 final size:163
Alignment explanation
Indices: 64749617--64750020 Score: 709
Period size: 163 Copynumber: 2.5 Consensus size: 163
64749607 ATGATATCTG
* * * *
64749617 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
*
64749682 AAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAG
66 AAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAG
64749747 TCCCGAAGGCATTTGTGCTAGTGACAATATCCA
131 TCCCGAAGGCATTTGTGCTAGTGACAATATCCA
64749780 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
*
64749845 AAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTACTATACCCGGGCTAAG
66 AAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAG
** *
64749910 TCCCGAAGGCATTTGTGCTAGTGACTCTATCCG
131 TCCCGAAGGCATTTGTGCTAGTGACAATATCCA
64749943 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
* *
64750008 GAGTTGCTATATC
66 AAGTTACTATATC
64750021 TAGCTAAATC
Statistics
Matches: 230, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
163 230 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (163 bp):
GGCTAAGTCCCGAAGGCATTTATGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
AAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACTATACCCGGGCTAAG
TCCCGAAGGCATTTGTGCTAGTGACAATATCCA
Found at i:64752988 original size:80 final size:79
Alignment explanation
Indices: 64752833--64753008 Score: 291
Period size: 80 Copynumber: 2.2 Consensus size: 79
64752823 GACCAAAGTG
* * *
64752833 TAAATATGTGAAAGTTTAGGGGAAAAATTGTAATTTTTCTAAAGTATGATTTATGGAATGATTTG
1 TAAATAAGTGAAAGTTTAGGGGAAAAATTGTAATTTTTCCAAAGTATAATTTATGGAATGATTTG
64752898 AATAAAGTGATAAT
66 AATAAAGTGATAAT
*
64752912 TAAATAAGTGAAAGTTTAGGGGAAAAATTGTAATTTTTTCCAAAGTATAATTTATGGACTGATTT
1 TAAATAAGTGAAAGTTTAGGGGAAAAATTGTAA-TTTTTCCAAAGTATAATTTATGGAATGATTT
*
64752977 GAATAATGTGATAAT
65 GAATAAAGTGATAAT
64752992 TAAATAAGTGAAA-TTTA
1 TAAATAAGTGAAAGTTTA
64753009 CTATTATAGA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 36 0.40
80 55 0.60
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.38
Consensus pattern (79 bp):
TAAATAAGTGAAAGTTTAGGGGAAAAATTGTAATTTTTCCAAAGTATAATTTATGGAATGATTTG
AATAAAGTGATAAT
Found at i:64753401 original size:48 final size:48
Alignment explanation
Indices: 64753285--64753562 Score: 255
Period size: 48 Copynumber: 5.8 Consensus size: 48
64753275 GGGTTGATGA
* * * * *
64753285 GATCCCGT-TAAGACCATATCTGGGATATGGCATCGACATCGATATGAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAT--GT
* *
64753334 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGCTATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
*
64753382 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * * *
64753430 GAACATCATGTAAGACCATAG-ATGGG-CTATCG-ACTTCG-AT--ATGTGT
1 GATC-CCATGTAAGACCAT-GTCTGGGAC-ATGGCA-TTGGCATCGATATGT
* * *
64753476 GATCCCATGTAAGACCATGTGTGGGACATGGCATTGGCATCAATAAGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
* * * * *
64753524 GTTCCCATGTAAGAACATATTTGGGATATGGCATTGGCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
64753563 CCGTACTTTG
Statistics
Matches: 189, Mismatches: 29, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
44 1 0.01
45 23 0.12
46 11 0.06
48 92 0.49
49 30 0.16
50 32 0.17
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
Found at i:64762165 original size:27 final size:27
Alignment explanation
Indices: 64762135--64762260 Score: 171
Period size: 27 Copynumber: 4.7 Consensus size: 27
64762125 ACCAAAGTAT
* * *
64762135 CCTCAATTTACAGAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACCGTTTTAC
* * *
64762162 CCTCGATTTACAGATTTACCGTTTTGC
1 CCTCGATTTACAAAATTACCGTTTTAC
*
64762189 CCTCGATTTATAAAATTACCGTTTTAC
1 CCTCGATTTACAAAATTACCGTTTTAC
*
64762216 CCTCGATTTACAAAATTACTGTTTTAC
1 CCTCGATTTACAAAATTACCGTTTTAC
*
64762243 CCTCGATTTGCAAAATTA
1 CCTCGATTTACAAAATTA
64762261 TCGAAATACC
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CCTCGATTTACAAAATTACCGTTTTAC
Found at i:64762181 original size:54 final size:54
Alignment explanation
Indices: 64762123--64762227 Score: 120
Period size: 54 Copynumber: 1.9 Consensus size: 54
64762113 ACTTGTAAAA
* * *
64762123 TTACCAAAGTATCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAGAT
1 TTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAT
**** * * *
64762177 TTACCGTTTTGCCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACA
1 TTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACA
64762228 AAATTACTGT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.39
Consensus pattern (54 bp):
TTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAT
Found at i:64762270 original size:27 final size:27
Alignment explanation
Indices: 64762087--64762272 Score: 88
Period size: 27 Copynumber: 6.9 Consensus size: 27
64762077 AATACTTTAG
* *
64762087 TTTACCAAATTACTAAAATACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
* ** * * *
64762114 CTTGTAAAATTAC-CAAAGTATCCTCAA
1 TTTACAAAATTACTGAAA-TACCCTCGA
* ***
64762141 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
* * * *** *
64762168 TTTACAGATTTACCGTTTTGCCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
* * ***
64762195 TTTATAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
***
64762222 TTTACAAAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGAAATACCCTCGA
*
64762249 TTTGCAAAATTA-TCGAAATACCCT
1 TTTACAAAATTACT-GAAATACCCT
64762273 TGTAGGGTAG
Statistics
Matches: 126, Mismatches: 30, Indels: 6
0.78 0.19 0.04
Matches are distributed among these distances:
26 4 0.03
27 122 0.97
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTCGA
Found at i:64762271 original size:54 final size:54
Alignment explanation
Indices: 64762159--64762272 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
64762149 ATTACTGTTT
* * * * ***
64762159 TACCCTCGATTTACAGATTTACCGTTTTGCCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAA
* * *
64762213 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTGCAAAATTATCGAAA
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAA
64762267 TACCCT
1 TACCCT
64762273 TGTAGGGTAG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGAAA
Found at i:64762293 original size:27 final size:27
Alignment explanation
Indices: 64762263--64762491 Score: 253
Period size: 27 Copynumber: 8.5 Consensus size: 27
64762253 CAAAATTATC
64762263 GAAATACCCTTGTAGGGTAGAAATACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* * *
64762290 GAAATATCCTTGTAGGGTCGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACT
* * *
64762317 GAAATACCCCTATAGGGTAGAAATACC
1 GAAATACCCTTGTAGGGTAGAAATACT
* * * *
64762344 GAAATACCCCTATACGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* *
64762371 AAAATACCCTTGTAGGGTAGAATTA-T
1 GAAATACCCTTGTAGGGTAGAAATACT
*
64762397 CGAAATACCCTTGTAGGGTAGAAATACC
1 -GAAATACCCTTGTAGGGTAGAAATACT
* *
64762425 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* ** *
64762452 GAAATACCCCTACAGGGTAGAATTACT
1 GAAATACCCTTGTAGGGTAGAAATACT
* *
64762479 GAGATACCATTGT
1 GAAATACCCTTGT
64762492 CGAGTAAAAT
Statistics
Matches: 173, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 172 0.99
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCTTGTAGGGTAGAAATACT
Found at i:64762469 original size:81 final size:81
Alignment explanation
Indices: 64762262--64762486 Score: 306
Period size: 81 Copynumber: 2.8 Consensus size: 81
64762252 GCAAAATTAT
* * * * *
64762262 CGAAATACCCTTGTAGGGTAGAAATACTGAAATATCCTTGTAGGGTCGAAATACCGAAATACCCC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
64762327 TATAGGGTAGAAATAC
66 TATAGGGTAGAAATAC
* * * * *
64762343 CGAAATACCCCTATACGGTAGAATTACTAAAATACCCTTGTAGGGTAGAATTATCGAAATACCCT
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
*
64762408 TGTAGGGTAGAAATAC
66 TATAGGGTAGAAATAC
* ** * *
64762424 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTACAGGGTAGAATTACTGAGATACC
1 CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACC
64762487 ATTGTCGAGT
Statistics
Matches: 124, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 124 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (81 bp):
CGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCC
TATAGGGTAGAAATAC
Found at i:64762883 original size:27 final size:27
Alignment explanation
Indices: 64762842--64762902 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
64762832 ACACATATAT
* *
64762842 ATATCT-GTTCTGGTGGCCTAGCCACA
1 ATATCTGGATCTGGTGACCTAGCCACA
* * *
64762868 ATATCTGGATCTGGTGACTTCGTCACA
1 ATATCTGGATCTGGTGACCTAGCCACA
64762895 ATATCTGG
1 ATATCTGG
64762903 CAGCCTCACT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
ATATCTGGATCTGGTGACCTAGCCACA
Found at i:64763029 original size:6 final size:6
Alignment explanation
Indices: 64763020--64763231 Score: 114
Period size: 6 Copynumber: 34.3 Consensus size: 6
64763010 TTGCATTCAC
* *
64763020 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG -TTACCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG
* * * *
64763070 ATACTG ATTTTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
64763119 ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTA ATTCTT
1 ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
** * * * *
64763169 ATTCCA ATTTTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
64763218 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
64763232 AATGTTTCTT
Statistics
Matches: 158, Mismatches: 28, Indels: 40
0.70 0.12 0.18
Matches are distributed among these distances:
5 12 0.08
6 121 0.77
7 17 0.11
8 8 0.05
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64763051 original size:25 final size:25
Alignment explanation
Indices: 64763023--64763112 Score: 135
Period size: 25 Copynumber: 3.6 Consensus size: 25
64763013 CATTCACATT
64763023 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
64763048 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* * *
64763073 CTGATTTTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
*
64763098 CTGATTCTGGTTCTG
1 CTGATTCTGATTCTG
64763113 ATTCTGATTC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:64763062 original size:31 final size:31
Alignment explanation
Indices: 64763020--64763149 Score: 134
Period size: 31 Copynumber: 4.4 Consensus size: 31
64763010 TTGCATTCAC
64763020 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
64763051 A---T--TT-TGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
64763076 ATTTTGATTCTG-TTACCTAATT--CTGATTCTG
1 ATTCTGATTCTGATT--CT-GTTACCTGATACTG
*
64763107 GTTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
64763138 ATTCTGATTCTG
1 ATTCTGATTCTG
64763150 TTACCTAATT
Statistics
Matches: 80, Mismatches: 7, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
25 22 0.28
26 2 0.03
28 2 0.03
29 2 0.03
30 6 0.08
31 40 0.50
32 4 0.05
33 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:64763115 original size:37 final size:37
Alignment explanation
Indices: 64763067--64763149 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
64763057 ATTCTGTTAC
* * *
64763067 CTGATACTGATTTTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* *
64763104 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
64763141 CTGATTCTG
1 CTGATTCTG
64763150 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:64763121 original size:62 final size:62
Alignment explanation
Indices: 64763042--64763210 Score: 248
Period size: 62 Copynumber: 2.7 Consensus size: 62
64763032 ATTCTGTTAC
* * *
64763042 CTGATACTGATTTTGATTCTGTTACCTGATACTGATTTTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATT
* *
64763104 CTGGTTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATT
1 CTGATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATT
* ** * *
64763166 CTTATTCCAATTTTGATTCTGTCACCTGATTCTGATTCTGATTCT
1 CTGATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCT
64763211 CATTTTGATT
Statistics
Matches: 95, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.48
Consensus pattern (62 bp):
CTGATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTAATT
Found at i:64763166 original size:25 final size:25
Alignment explanation
Indices: 64763108--64763172 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 25
64763098 CTGATTCTGG
*
64763108 TTCTGATTCTGATTCTGTTACCTGA
1 TTCTGATTCTGATTCTGTTACCTAA
*
64763133 TACTGATTCTGATTCTGTTACCTAA
1 TTCTGATTCTGATTCTGTTACCTAA
* *
64763158 TTCTAATTCTTATTC
1 TTCTGATTCTGATTC
64763173 CAATTTTGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (25 bp):
TTCTGATTCTGATTCTGTTACCTAA
Found at i:64763183 original size:37 final size:37
Alignment explanation
Indices: 64763142--64763222 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
64763132 ATACTGATTC
* *
64763142 TGATTCTGTTACCTAATTCTAATTCTTATTC-CAATTT
1 TGATTCTGTCACCTAATTCTAATTCTGATTCTC-ATTT
* *
64763179 TGATTCTGTCACCTGATTCTGATTCTGATTCTCATTT
1 TGATTCTGTCACCTAATTCTAATTCTGATTCTCATTT
64763216 TGATTCT
1 TGATTCT
64763223 AGTTCTGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 38 0.97
38 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (37 bp):
TGATTCTGTCACCTAATTCTAATTCTGATTCTCATTT
Found at i:64766343 original size:20 final size:20
Alignment explanation
Indices: 64766317--64766383 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
64766307 ATTTTGATAT
64766317 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
64766337 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64766357 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64766377 ACATGAT
1 ACATGAT
64766384 GTATTCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64766344 original size:11 final size:11
Alignment explanation
Indices: 64766328--64766383 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
64766318 CATGATTGAT
64766328 ATGATATGCTC
1 ATGATATGCTC
64766339 ATGATATG-T-
1 ATGATATGCTC
*
64766348 ATGATATGCAC
1 ATGATATGCTC
64766359 ATGATATG-T-
1 ATGATATGCTC
*
64766368 ATGATATGCAC
1 ATGATATGCTC
64766379 ATGAT
1 ATGAT
64766384 GTATTCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 16 0.42
10 1 0.03
11 21 0.55
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.36
Consensus pattern (11 bp):
ATGATATGCTC
Done.