Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 206 of 318
Found at i:64766351 original size:9 final size:10
Alignment explanation
Indices: 64766327--64766376 Score: 59
Period size: 9 Copynumber: 5.0 Consensus size: 10
64766317 ACATGATTGA
64766327 TATGATATGC
1 TATGATATGC
64766337 TCATGATATG-
1 T-ATGATATGC
64766347 TATGATATGC
1 TATGATATGC
*
64766357 ACATGATATG-
1 -TATGATATGC
64766367 TATGATATGC
1 TATGATATGC
64766377 ACATGATGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
9 16 0.47
10 2 0.06
11 16 0.47
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (10 bp):
TATGATATGC
Found at i:64766505 original size:25 final size:26
Alignment explanation
Indices: 64766433--64766530 Score: 137
Period size: 25 Copynumber: 3.8 Consensus size: 26
64766423 GAGGAAGTGC
64766433 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
64766459 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* **
64766486 AAAAGGGCCT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
64766511 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
64766531 ATTAAAGAGG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
25 31 0.47
26 9 0.14
27 26 0.39
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:64771266 original size:43 final size:43
Alignment explanation
Indices: 64771205--64771316 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
64771195 CCGGCATTAC
* *
64771205 GCCTGCTAGGCATGAAGGCCCGAATACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64771248 GCCTGCTAGGCACGAAGGCTCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
64771291 GCTTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
64771317 TAATACCAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.29, C:0.30, G:0.27, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:64771389 original size:38 final size:37
Alignment explanation
Indices: 64771309--64771432 Score: 131
Period size: 38 Copynumber: 3.2 Consensus size: 37
64771299 GGCACGAAGG
* * * ** *
64771309 CCCGAATATAATACCAGCACTAGGCCTATGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-TTTAA
64771347 CCCGGATATAATACCAGCACGAAGCCTGCGGGTTTCAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGTTT-AA
**
64771385 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG--TTTAA
64771424 GCCCGGATA
1 -CCCGGATA
64771433 CACATCAAAT
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
37 3 0.04
38 58 0.78
39 2 0.03
40 11 0.15
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (37 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGTTTAA
Found at i:64775422 original size:30 final size:30
Alignment explanation
Indices: 64775388--64775454 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
64775378 GGGGCAAACC
*
64775388 GTGTGTCACACACGGCCTAGACACGAGCCA
1 GTGTGTCACACACAGCCTAGACACGAGCCA
* *
64775418 GTGTGTCACACACAGCCTAGTCACGAGCCC
1 GTGTGTCACACACAGCCTAGACACGAGCCA
64775448 GTGTGTC
1 GTGTGTC
64775455 TCCCCATGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.22, C:0.33, G:0.27, T:0.18
Consensus pattern (30 bp):
GTGTGTCACACACAGCCTAGACACGAGCCA
Found at i:64780188 original size:40 final size:39
Alignment explanation
Indices: 64780028--64780190 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
64780018 TGTGTATGAA
*
64780028 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
64780067 TGTGCGAGTTGTGATGTCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
64780106 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64780145 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
64780185 TGTGCG
1 TGTGCG
64780191 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:64780206 original size:40 final size:40
Alignment explanation
Indices: 64780045--64780226 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
64780035 ATTGTGATAT
* *** **
64780045 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * ** *
64780084 CCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
64780123 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
64780162 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
64780202 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64780227 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 80 0.64
40 45 0.36
ACGTcount: A:0.21, C:0.23, G:0.34, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:64784369 original size:17 final size:18
Alignment explanation
Indices: 64784327--64784375 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
64784317 AGTTGAAAAG
64784327 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
64784346 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
64784363 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
64784376 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:64785264 original size:40 final size:39
Alignment explanation
Indices: 64785198--64785363 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
64785188 AAATTGAATG
* * *
64785198 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
64785237 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
64785276 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
64785316 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
64785356 ATATCCGG
1 ATATCCGG
64785364 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:64793257 original size:40 final size:40
Alignment explanation
Indices: 64793191--64793357 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
64793181 AAATTGAATG
* * *
64793191 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
64793230 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
64793270 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
64793310 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
64793350 ATATCCGG
1 ATATCCGG
64793358 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64798532 original size:40 final size:39
Alignment explanation
Indices: 64798373--64798534 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
64798363 TGTGTATGAA
*
64798373 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
64798412 TGTGCGAGTTGTGATGTCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64798450 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
64798489 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
64798529 TGTGCG
1 TGTGCG
64798535 GGTTACCATA
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
38 35 0.31
39 60 0.54
40 17 0.15
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:64798550 original size:40 final size:40
Alignment explanation
Indices: 64798390--64798570 Score: 154
Period size: 40 Copynumber: 4.6 Consensus size: 40
64798380 ATTGTGATAT
* *** **
64798390 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * ** *
64798429 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
64798467 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
64798506 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
64798546 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64798571 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 34 0.28
39 44 0.36
40 45 0.37
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:64804063 original size:16 final size:14
Alignment explanation
Indices: 64804031--64804066 Score: 54
Period size: 16 Copynumber: 2.4 Consensus size: 14
64804021 GTAGTTTATT
64804031 TAATTATTTTAAAA
1 TAATTATTTTAAAA
64804045 TAATTACTTTTATAAA
1 TAATTA-TTTTA-AAA
64804061 TAATTA
1 TAATTA
64804067 AAAATGCACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 5 0.25
16 9 0.45
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATTATTTTAAAA
Found at i:64808153 original size:29 final size:29
Alignment explanation
Indices: 64808120--64808250 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
64808110 TGACGAGATC
*
64808120 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
64808149 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
64808178 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
64808207 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
64808236 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
64808251 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:64816258 original size:29 final size:29
Alignment explanation
Indices: 64816225--64816355 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
64816215 TGACGAGATC
*
64816225 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
64816254 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
64816283 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
64816312 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
64816341 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
64816356 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:64820245 original size:29 final size:29
Alignment explanation
Indices: 64820211--64820400 Score: 265
Period size: 29 Copynumber: 6.6 Consensus size: 29
64820201 TACTCGATTT
** * *
64820211 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
64820240 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
64820269 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64820298 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64820327 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64820356 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64820385 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64820401 ATCTCGTCAC
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
28 2 0.01
29 143 0.99
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64823999 original size:29 final size:29
Alignment explanation
Indices: 64823902--64824011 Score: 116
Period size: 29 Copynumber: 3.9 Consensus size: 29
64823892 TAAATGTATC
* * *
64823902 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * *
64823930 TGGCCCATTAGACCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
64823959 TGACCCGTTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* *
64823988 TGGCCCGTTAGG-CCAAGTCACATT
1 TGGCCCATTAGGCCCAAATCACATT
64824012 CATAATCATG
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
28 24 0.35
29 44 0.65
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:64824258 original size:16 final size:16
Alignment explanation
Indices: 64824239--64824277 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
64824229 TCGGCTTTTT
64824239 GGCTTTTCAGCATTTC
1 GGCTTTTCAGCATTTC
*
64824255 GGCTTTTCGGCATTTC
1 GGCTTTTCAGCATTTC
*
64824271 AGCTTTT
1 GGCTTTT
64824278 GCCACTACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.21, T:0.46
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:64824259 original size:24 final size:24
Alignment explanation
Indices: 64824227--64824273 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
64824217 GTAGCCAAAC
* *
64824227 TTTCGGCTTTTTGGCTTTTCAGCA
1 TTTCGGCTTTTCGGCATTTCAGCA
64824251 TTTCGGCTTTTCGGCATTTCAGC
1 TTTCGGCTTTTCGGCATTTCAGC
64824274 TTTTGCCACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.23, G:0.21, T:0.47
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCAGCA
Found at i:64828658 original size:15 final size:15
Alignment explanation
Indices: 64828635--64828665 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64828625 ATAGGAAAAG
*
64828635 TAAGGCCTACAACTA
1 TAAGACCTACAACTA
64828650 TAAGACCTACAACTA
1 TAAGACCTACAACTA
64828665 T
1 T
64828666 GACGCTCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.26, G:0.10, T:0.23
Consensus pattern (15 bp):
TAAGACCTACAACTA
Found at i:64832521 original size:42 final size:42
Alignment explanation
Indices: 64832422--64832573 Score: 152
Period size: 42 Copynumber: 3.6 Consensus size: 42
64832412 TGTGTTATTG
**
64832422 TGTAAGACCACATCTGGGAC-TTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTA--TATGATTT-CA
* *
64832465 TGTAAGACCATGTCTGGGACGTTGGCATCGTATCTGATTTCG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGTATATGATTTCA
* * *
64832507 TGTAAGACCCTGTCTGCG-CAG-TGGCATCGATATTTGATTGT-A
1 TGTAAGACCATGTCTGGGAC-GTTGGCATCG-TATATGATT-TCA
64832549 TGTAAGACCATGTCTGGGACGTTGG
1 TGTAAGACCATGTCTGGGACGTTGG
64832574 TATTGTATGA
Statistics
Matches: 92, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 9 0.10
42 43 0.47
43 30 0.33
44 9 0.10
45 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGTATATGATTTCA
Found at i:64837890 original size:27 final size:26
Alignment explanation
Indices: 64837860--64837942 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
64837850 ATCTCATATC
*
64837860 TGTAGGCTAGTATTACTGAAATACCCT
1 TGTAGG-TAGAATTACTGAAATACCCT
*
64837887 TGTAGGGTAGAATTACTGAAATGCACC-
1 TGTA-GGTAGAATTACTGAAATAC-CCT
*
64837914 TGTATGGTAGAATTACTAAAATACCCT
1 TGTA-GGTAGAATTACTGAAATACCCT
64837941 TG
1 TG
64837943 GTTTACAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
26 2 0.04
27 42 0.88
28 4 0.08
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (26 bp):
TGTAGGTAGAATTACTGAAATACCCT
Found at i:64837954 original size:27 final size:27
Alignment explanation
Indices: 64837924--64838339 Score: 360
Period size: 27 Copynumber: 15.4 Consensus size: 27
64837914 TGTATGGTAG
* * **
64837924 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * **
64837951 AATTA-CTGAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
64837977 AATTACCAAAATACCCTTGATTAGCAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
64838004 AATTACCATAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
64838031 AATTACCAAAATACCCTT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* * *
64838058 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
64838085 AATTACCGAAATACCCTTAACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
64838112 AATTACCAAAATACCTTTGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
64838139 AATTA-CAGAAATACCTTTAATTTTTAA
1 AATTACCA-AAATACCCTTGATTTGTAA
* *
64838166 AATTACCAAAATACCCCTGATTTGAAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
64838193 AATTACCAAAATGCCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * **
64838220 AATTA-CAGAAATACCCCTAATTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
64838247 AATTA-CAGAAATACCCTTGACTTT-TAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * *
64838275 AATTA-CAGAAATACCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGATTTGTAA
* * *
64838302 AATTACCAAAATATCCTTGGTTTGTAG
1 AATTACCAAAATACCCTTGATTTGTAA
*
64838329 ATTTACCAAAA
1 AATTACCAAAA
64838340 CACCTTTGTA
Statistics
Matches: 327, Mismatches: 52, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
26 27 0.08
27 272 0.83
28 28 0.09
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:64838636 original size:41 final size:41
Alignment explanation
Indices: 64838586--64838709 Score: 158
Period size: 41 Copynumber: 3.0 Consensus size: 41
64838576 GAGAAAAAAT
* *
64838586 TTGAAGATCGCATGGTTGCTTGATGACCGTGGATCCACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
* * *
64838627 TTGAGGATCGCATGGCTGCTTGACGACCTTGGATCGACCGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
* * ** *
64838668 TTAAGGATCGCATGGTTGCTTAACGATTGTGGATCCAACGA
1 TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
64838709 T
1 T
64838710 GGCTTTTAAG
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
TTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGA
Found at i:64839157 original size:22 final size:22
Alignment explanation
Indices: 64839113--64839165 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
64839103 GTTGCTGTAA
* * *
64839113 TGTTTACGGCTATGTCCTGTCC
1 TGTTTATGGCTATATCCTATCC
*
64839135 TGTTTATGGCTATATGCTATCC
1 TGTTTATGGCTATATCCTATCC
*
64839157 TGTCTATGG
1 TGTTTATGG
64839166 TGATAAGCCG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.43
Consensus pattern (22 bp):
TGTTTATGGCTATATCCTATCC
Found at i:64842324 original size:29 final size:29
Alignment explanation
Indices: 64842291--64842422 Score: 174
Period size: 29 Copynumber: 4.6 Consensus size: 29
64842281 GTGACGAGAT
*
64842291 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
64842320 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
64842349 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
64842378 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
64842407 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
64842423 AGCTCGAAGG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 93 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:64850141 original size:29 final size:29
Alignment explanation
Indices: 64850108--64850268 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
64850098 GTGACGAGAT
*
64850108 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
64850137 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
64850166 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
64850195 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
64850224 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
64850253 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
64850269 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:64852810 original size:27 final size:28
Alignment explanation
Indices: 64852745--64852813 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
64852735 AATGAGATTG
*
64852745 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTGAATTGTATA
*
64852773 GCACTAAGTGTGCGAGTTGACTAT-TA-A
1 GCACTAAGTGTGCGAGTTGAAT-TGTATA
64852800 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64852814 GACTTACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 15 0.39
28 22 0.58
29 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTGAATTGTATA
Found at i:64852822 original size:27 final size:27
Alignment explanation
Indices: 64852745--64852823 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 27
64852735 AATGAGATTG
* * *
64852745 GCACTAAGTGTGCGAGTTTAAT-TGTATA
1 GCACTAAGTGTGCGACTTGACTAT-TA-A
*
64852773 GCACTAAGTGTGCGAGTTGACTATTAA
1 GCACTAAGTGTGCGACTTGACTATTAA
64852800 GCACTAAGTGTGCGGACTT-ACTAT
1 GCACTAAGTGTGC-GACTTGACTAT
64852824 ATATTTTCGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
27 19 0.41
28 26 0.57
29 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTGACTATTAA
Found at i:64854369 original size:27 final size:27
Alignment explanation
Indices: 64854338--64854425 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
64854328 CTGCCAGAAT
64854338 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGACAGAGTCACCAGATAC
* *
64854365 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGACAGAGTCACCAGATAC
64854392 AGATATATGTGACAGAGTCACCAGAT-C
1 AGATA-ATGTGACAGAGTCACCAGATAC
64854419 AGATAAT
1 AGATAAT
64854426 TGTGGGGTAG
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.04
27 35 0.65
28 17 0.31
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (27 bp):
AGATAATGTGACAGAGTCACCAGATAC
Found at i:64859664 original size:43 final size:43
Alignment explanation
Indices: 64859583--64859737 Score: 155
Period size: 42 Copynumber: 3.7 Consensus size: 43
64859573 TGTGTTATCG
* *
64859583 TGTAAGACCACGTCTGGGAC-TTGGTATCGACT-TATGATTTAGA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGATTT-GA
*
64859626 TGTAAGACCACGTTTGGGACGTTGGCATC-ATATTTGATTTCG-
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTT-GA
*
64859668 TGTAAGACC-CTGTCTGGGTA-G-TGGCATCGATAATTGA-TTGCA
1 TGTAAGACCAC-GTCTGGG-ACGTTGGCATCGATATTTGATTTG-A
*
64859710 TGTAAGACCATGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
64859738 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 7, Indels: 20
0.78 0.06 0.16
Matches are distributed among these distances:
40 1 0.01
41 11 0.12
42 41 0.43
43 35 0.37
44 7 0.07
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTTGA
Found at i:64864103 original size:6 final size:6
Alignment explanation
Indices: 64864082--64864158 Score: 68
Period size: 6 Copynumber: 12.5 Consensus size: 6
64864072 TCAGAACTAC
* * *
64864082 AATCAA AATGAG AATCAG AATCAG AATCAG -GTGACAG AATCAG AATCAG
1 AATCAG AATCAG AATCAG AATCAG AATCAG AAT--CAG AATCAG AATCAG
*
64864131 AATCAGG TAAT-AG AATCAA AATCAG AAT
1 AATCA-G -AATCAG AATCAG AATCAG AAT
64864159 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.07
6 45 0.78
7 5 0.09
8 4 0.07
ACGTcount: A:0.51, C:0.13, G:0.18, T:0.18
Consensus pattern (6 bp):
AATCAG
Found at i:64864125 original size:25 final size:25
Alignment explanation
Indices: 64864092--64864158 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
64864082 AATCAAAATG
*
64864092 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
*
64864117 AGAATCAGAATCAGAATCAGGTAAT
1 AGAATCAGAATCAGAATCAGGTAAC
*
64864142 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
64864159 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:64864424 original size:27 final size:26
Alignment explanation
Indices: 64864376--64864427 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
64864366 GCGAGGCTGC
*
64864376 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
64864402 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
64864428 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:64864732 original size:54 final size:54
Alignment explanation
Indices: 64864664--64864951 Score: 389
Period size: 54 Copynumber: 5.3 Consensus size: 54
64864654 AACACCCTAG
* * **
64864664 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTAAATCGA
* *
64864718 GGGTAAAACAGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTAAATCGA
* * *
64864772 GGGTAAAACGATAATTCTATAAATTGAGGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTAAATCGA
* * *
64864826 AGGTAAGACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTAAATCGA
* * ** * *
64864880 GGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAA-CGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAG-TAATTCTGTAAATCGA
*
64864934 GGGTAAAACAGTAATTTT
1 GGGTAAAACGGTAATTTT
64864952 GTAATTCAAA
Statistics
Matches: 205, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.00
54 204 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (54 bp):
GGGTAAAACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTGTAAATCGA
Found at i:64864776 original size:81 final size:81
Alignment explanation
Indices: 64864664--64864949 Score: 367
Period size: 81 Copynumber: 3.5 Consensus size: 81
64864654 AACACCCTAG
* *
64864664 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAG
* *
64864729 TAATTTTATAAATTGA
66 TAATTTTGTAAATCGA
* * * * * *
64864745 GGGTAAAATAGTAATTCTGTCAATCGAGGGTAAAAC-GATAATTCTATAAATTGAGGGTAAAATA
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAG-TAATTCTATAAATCGAGGGTAAAACA
64864809 GTAATTTTGTAAATCGA
65 GTAATTTTGTAAATCGA
* * * * * *
64864826 AGGTAAGACGGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAG
* *
64864891 TAATTCTGTAAATCAA
66 TAATTTTGTAAATCGA
* * *
64864907 GGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACAGTAATT
1 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATT
64864950 TTGTAATTCA
Statistics
Matches: 174, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
80 1 0.01
81 172 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACAG
TAATTTTGTAAATCGA
Found at i:64864965 original size:27 final size:27
Alignment explanation
Indices: 64864664--64864955 Score: 327
Period size: 27 Copynumber: 10.8 Consensus size: 27
64864654 AACACCCTAG
** *
64864664 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
64864691 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
64864718 GGGTAAAACAGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
64864745 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
64864772 GGGTAAAAC-GATAATTCTATAAATTGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
*
64864799 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * * * *
64864826 AGGTAAGACGGTAATTTTATAAATTGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
64864853 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
64864880 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAACAGTAATTTTGTAAATCGA
64864907 GGGTAAAAC-GATAATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCGA
64864934 GGGTAAAACAGTAATTTTGTAA
1 GGGTAAAACAGTAATTTTGTAA
64864956 TTCAAAGGTA
Statistics
Matches: 223, Mismatches: 38, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 219 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:64864974 original size:54 final size:54
Alignment explanation
Indices: 64864664--64865006 Score: 208
Period size: 54 Copynumber: 6.4 Consensus size: 54
64864654 AACACCCTAG
** * * * * * *
64864664 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGATAATTTTATAAATCGA
* ** * * * * *
64864718 GGGTAAAACAGTAATTTTATAAATTGAGGGTAAAA-TAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGA-TAATTTTATAAATCGA
* * ** * * *
64864772 GGGTAAAAC-GATAATTCTATAAATTGAGGGTAAAA-TAGTAATTTTGTAAATCGA
1 GGGTAAAACAG-TAATTTTGTAAATCAAAGGTAAAACGA-TAATTTTATAAATCGA
* * * * ** * * *
64864826 AGGTAAGACGGTAATTTTATAAATTGAGGGTAAAA-TAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGA-TAATTTTATAAATCGA
* * * *
64864880 GGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGATAATTTTATAAATCGA
* **** * *
64864934 GGGTAAAACAGTAATTTTGTAATTCAAAGGTACTTTGATAATTTTACAAGTCGA
1 GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGATAATTTTATAAATCGA
***
64864988 GGGTATTTCAGTAATTTTG
1 GGGTAAAACAGTAATTTTG
64865007 CAAACTGAGG
Statistics
Matches: 248, Mismatches: 37, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
53 1 0.00
54 245 0.99
55 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
GGGTAAAACAGTAATTTTGTAAATCAAAGGTAAAACGATAATTTTATAAATCGA
Found at i:64865030 original size:54 final size:54
Alignment explanation
Indices: 64864962--64865111 Score: 153
Period size: 54 Copynumber: 2.8 Consensus size: 54
64864952 GTAATTCAAA
* * *
64864962 GGTACTTT-GATAATTTTACAAGTCGAGGGTATTTCAGTAATTTTGCAAACTGAG
1 GGTACTTTAG-TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAG
* ** * *
64865016 GGTA-TTTCAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGGG
1 GGTACTTT-AGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAG
* * * *
64865070 GGTACTTTGGTAATTTTACAACT-GGGGGTATTTTAGTAATTT
1 GGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTT
64865112 GGTAAACTAA
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
53 18 0.23
54 57 0.72
55 4 0.05
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (54 bp):
GGTACTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACCGAG
Found at i:64865097 original size:27 final size:27
Alignment explanation
Indices: 64864972--64865111 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 27
64864962 GGTACTTTGA
*
64864972 TAATTTTACAAGTCGAGGGTATTTCAG
1 TAATTTTACAACTCGAGGGTATTTCAG
*
64864999 TAATTTTGCAAACT-GAGGGTATTTCAG
1 TAATTTTAC-AACTCGAGGGTATTTCAG
* * **
64865026 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAACTCGAGGGTATTTCAG
* * *
64865053 TAATTTTATAAAC-CGGGGGTACTTT-GG
1 TAATTTTA-CAACTCGAGGGTA-TTTCAG
* *
64865080 TAATTTTACAACT-GGGGGTATTTTAG
1 TAATTTTACAACTCGAGGGTATTTCAG
64865106 TAATTT
1 TAATTT
64865112 GGTAAACTAA
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
25 3 0.03
26 20 0.21
27 63 0.67
28 8 0.09
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.39
Consensus pattern (27 bp):
TAATTTTACAACTCGAGGGTATTTCAG
Found at i:64871698 original size:27 final size:27
Alignment explanation
Indices: 64871660--64871719 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
64871650 TTAGTTTGCC
* * *
64871660 AATTACTGAAATGCCCTCGATTTATAG
1 AATTACTAAAATGCCCTCGATTTACAA
64871687 AATTACTAAAATGCCCTCGATTTACAA
1 AATTACTAAAATGCCCTCGATTTACAA
64871714 AATTAC
1 AATTAC
64871720 CGTTTTACCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACTAAAATGCCCTCGATTTACAA
Found at i:64871730 original size:27 final size:27
Alignment explanation
Indices: 64871673--64872086 Score: 482
Period size: 27 Copynumber: 15.3 Consensus size: 27
64871663 TACTGAAATG
* **** *
64871673 CCCTCGATTTATAGAATTACTAAAATG
1 CCCTCGATTTACAGAATTACTGTTTTA
* *
64871700 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
64871727 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
*
64871754 CCCTCGATTTACAGAATTACTATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
64871781 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
*
64871808 CCCTC-AGTTTATAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
*
64871835 CCCTCGATTTATAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
*
64871862 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
64871889 CCCTC-AGTTTACAGAATTATTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
* *
64871916 CCCTCGATTTATAGAATTATTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
64871943 CCCTC-AGTTTACAAAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
** * *
64871970 CCCTCGATTTTTAAAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
* * *
64871997 CCCTCAATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
64872024 CCCTC-AGTTTACAGAATTACTGTTTTA
1 CCCTCGA-TTTACAGAATTACTGTTTTA
**
64872051 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
64872078 CCCTTGATT
1 CCCTCGATT
64872087 GTGAAATTAC
Statistics
Matches: 343, Mismatches: 32, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.02
27 332 0.97
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:64871799 original size:81 final size:81
Alignment explanation
Indices: 64871673--64872086 Score: 543
Period size: 81 Copynumber: 5.1 Consensus size: 81
64871663 TACTGAAATG
**** * * *
64871673 CCCTCGATTTATAGAATTACTAAAATGCCCTC-GATTTACAAAATTACCGTTTTACCCTCAGTTT
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAG-TTTACAGAATTACTGTTTTACCCTCAGTTT
64871737 ACAGAATTACTGTTTTA
65 ACAGAATTACTGTTTTA
* *
64871754 CCCTCGATTTACAGAATTACTATTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCAGTTTA
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCAGTTTA
*
64871819 TAGAATTACTGTTTTA
66 CAGAATTACTGTTTTA
*
64871835 CCCTCGATTTATAGAATTA-TCGTTTTACCCTC-GATTTACAGAATTACCGTTTTACCCTCAGTT
1 CCCTCGATTTATAGAATTACT-GTTTTACCCTCAG-TTTACAGAATTACTGTTTTACCCTCAGTT
*
64871898 TACAGAATTATTGTTTTA
64 TACAGAATTACTGTTTTA
* * *
64871916 CCCTCGATTTATAGAATTATTGTTTTACCCTCAGTTTACAAAATTACTGTTTTACCCTCGATTTT
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTC-A-GTT
*
64871981 TA-A-AATTACCGTTTTA
64 TACAGAATTACTGTTTTA
* *
64871997 CCCTCAATTTATAGAATTACCGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTC-GATTT
1 CCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCAG-TTT
**
64872061 ACAGAATTACCATTTTA
65 ACAGAATTACTGTTTTA
*
64872078 CCCTTGATT
1 CCCTCGATT
64872087 GTGAAATTAC
Statistics
Matches: 297, Mismatches: 26, Indels: 20
0.87 0.08 0.06
Matches are distributed among these distances:
79 4 0.01
80 3 0.01
81 281 0.95
82 5 0.02
83 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.10, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACTGTTTTACCCTCAGTTTACAGAATTACTGTTTTACCCTCAGTTTA
CAGAATTACTGTTTTA
Found at i:64872232 original size:27 final size:27
Alignment explanation
Indices: 64872091--64872232 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
64872081 TTGATTGTGA
* * *
64872091 AATTACTGAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
64872118 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** *
64872145 AATTACTAAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
64872172 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
64872199 AATTACCGAGATACCTTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
64872226 AATTACC
1 AATTACC
64872233 ATTTTGCCCC
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:64872469 original size:27 final size:26
Alignment explanation
Indices: 64872431--64872513 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
64872421 CGGAGGAAGC
*
64872431 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
64872458 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
64872484 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
64872511 GTT
1 GTT
64872514 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:64872846 original size:27 final size:25
Alignment explanation
Indices: 64872799--64872898 Score: 94
Period size: 27 Copynumber: 3.8 Consensus size: 25
64872789 TATGGCTTTG
* * *
64872799 TGCCACGTATTCTGTT-AGGTGGCTT
1 TGCCACATA-TCTGTTCTGGTGGCTC
64872824 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACA-TATCTG-TTCTGGTGGCTC
*
64872851 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCAC-ATATCTGT-TCTGGTGGCTC
*
64872878 TGTCACGATATCTGTTCTGGT
1 TGCCAC-ATATCTGTTCTGGT
64872899 AGCCATGCTG
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
25 10 0.16
26 11 0.17
27 42 0.66
28 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (25 bp):
TGCCACATATCTGTTCTGGTGGCTC
Found at i:64873024 original size:6 final size:6
Alignment explanation
Indices: 64873015--64873177 Score: 140
Period size: 6 Copynumber: 26.8 Consensus size: 6
64873005 TTGCATTCAC
* *
64873015 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
64873064 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
64873112 ATTCTG -TCACTTA ATTCTG ATTCTG ATTCTT ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
64873161 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
64873178 CATTTTGGTT
Statistics
Matches: 127, Mismatches: 16, Indels: 28
0.74 0.09 0.16
Matches are distributed among these distances:
5 9 0.07
6 107 0.84
7 8 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:64873155 original size:85 final size:85
Alignment explanation
Indices: 64873015--64873177 Score: 299
Period size: 85 Copynumber: 1.9 Consensus size: 85
64873005 TTGCATTCAC
64873015 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
64873080 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* * *
64873100 ATTCTGATTCTGATTCTGTCACTTAATTCTGATTCTGATTCTTATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
64873165 TGATTCTGATTCT
66 TGATTCTGATTCT
64873178 CATTTTGGTT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 75 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:64873195 original size:85 final size:85
Alignment explanation
Indices: 64873021--64873198 Score: 268
Period size: 85 Copynumber: 2.1 Consensus size: 85
64873011 TCACATTCTG
64873021 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
1 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
* **
64873086 TGATTCTGTTACTGATTCTG
66 TGATTCTATTACTGATTCCA
* * *
64873106 ATTCTGATTCTGTCACTTAATTCTGATTCTGATTCTTATTCTGTTACTAATATTGATTCTGATTC
1 ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
* *
64873171 TGATTCTCATT-TTGGTTCCA
66 TGATTCT-ATTACTGATTCCA
64873191 ATTCTGAT
1 ATTCTGAT
64873199 AATGTTCTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
85 82 0.98
86 2 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTCTGATTC
TGATTCTATTACTGATTCCA
Found at i:64879891 original size:28 final size:29
Alignment explanation
Indices: 64879849--64879963 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
64879839 TACCTGTATC
* * *
64879849 TGGCTCATTAAGCCCAA-TCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
64879877 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
64879906 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
64879935 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
64879963 T
1 T
64879964 TCATGCTTAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 28 0.37
29 47 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:64880197 original size:16 final size:16
Alignment explanation
Indices: 64880178--64880223 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
64880168 AAACTTTCAG
*
64880178 CTTTTCGGCATTTCGA
1 CTTTTCGGCATTTCCA
*
64880194 CTTTTCGGTATTTCCA
1 CTTTTCGGCATTTCCA
* *
64880210 CATTTCGACATTTC
1 CTTTTCGGCATTTC
64880224 AGTATTTTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.15, C:0.26, G:0.13, T:0.46
Consensus pattern (16 bp):
CTTTTCGGCATTTCCA
Found at i:64885511 original size:42 final size:42
Alignment explanation
Indices: 64885452--64885531 Score: 160
Period size: 42 Copynumber: 1.9 Consensus size: 42
64885442 AATAAAAGGG
64885452 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTTGGA
1 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTTGGA
64885494 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATT
1 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATT
64885532 CGAATTTAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.46, C:0.05, G:0.20, T:0.29
Consensus pattern (42 bp):
TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTTGGA
Found at i:64892182 original size:40 final size:40
Alignment explanation
Indices: 64892055--64892184 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
64892045 ATGCTGGAAA
* *
64892055 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
64892095 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
64892135 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
64892175 TTATATCCGG
1 TTATATCCGG
64892185 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:64895298 original size:24 final size:24
Alignment explanation
Indices: 64895266--64895313 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
64895256 TGCTGGTAAA
*
64895266 ATATCCGGGTTAAATCCCGCAGGC
1 ATATCCGGGATAAATCCCGCAGGC
64895290 ATATCCGGGATAAATCCCGCAGGC
1 ATATCCGGGATAAATCCCGCAGGC
64895314 CTAGTGCTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.25, T:0.19
Consensus pattern (24 bp):
ATATCCGGGATAAATCCCGCAGGC
Found at i:64899455 original size:7 final size:7
Alignment explanation
Indices: 64899439--64899469 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
64899429 AAGAGAGAAT
64899439 GATGAGG
1 GATGAGG
*
64899446 GATGATG
1 GATGAGG
64899453 GATGAGG
1 GATGAGG
64899460 GATGAGG
1 GATGAGG
64899467 GAT
1 GAT
64899470 CAAATGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (7 bp):
GATGAGG
Found at i:64903107 original size:41 final size:41
Alignment explanation
Indices: 64903048--64903196 Score: 149
Period size: 41 Copynumber: 3.6 Consensus size: 41
64903038 AATTATTCCA
* * *
64903048 TGAATTGAACATACATGCCCCTGTTTGTACTTTAGTGCGCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTTAGTACCCC
* * * ** * *
64903089 TAAATTGCACATACATGCCCTTATTCATACTTCAATACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTTAGTACCCC
* * *
64903130 TGAATTGCACATATATGCCACTGTTTGTAC-TTCGATACCCC
1 TGAATTGCACATACATGCCCCTGTTTGTACTTTAG-TACCCC
64903171 TGAATTGCACATA-AGTGCCCCTGTTT
1 TGAATTGCACATACA-TGCCCCTGTTT
64903197 ACACTCCGAT
Statistics
Matches: 85, Mismatches: 21, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
40 2 0.02
41 83 0.98
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.34
Consensus pattern (41 bp):
TGAATTGCACATACATGCCCCTGTTTGTACTTTAGTACCCC
Found at i:64903207 original size:41 final size:41
Alignment explanation
Indices: 64903123--64903207 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
64903113 TCATACTTCA
** *
64903123 ATACCCCTGAATTGCACATATATGCCACTGTTTGTACTTCG
1 ATACCCCTGAATTGCACATATATGCCACTGTTTACACTCCG
*
64903164 ATACCCCTGAATTGCACATA-AGTGCCCCTGTTTACACTCCG
1 ATACCCCTGAATTGCACATATA-TGCCACTGTTTACACTCCG
64903205 ATA
1 ATA
64903208 ACATTGACTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 1 0.03
41 38 0.97
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (41 bp):
ATACCCCTGAATTGCACATATATGCCACTGTTTACACTCCG
Found at i:64908593 original size:46 final size:46
Alignment explanation
Indices: 64908525--64908661 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
64908515 TATATATACA
* * *
64908525 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * *
64908571 CATCTCATACACGTTTCGCATTAGCCATTTGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
* * * *
64908617 TATCTCATACACATTTCGGATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATAT
64908662 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.36
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTTGGCTTTACCACATATC
Found at i:64908692 original size:47 final size:47
Alignment explanation
Indices: 64908640--64908779 Score: 235
Period size: 47 Copynumber: 3.0 Consensus size: 47
64908630 TTTCGGATTA
* * **
64908640 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
*
64908687 GCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
64908734 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
64908780 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
Found at i:64908731 original size:23 final size:23
Alignment explanation
Indices: 64908704--64908778 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
64908694 GGCCTTATCG
64908704 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
64908727 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
64908749 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
64908774 CACAT
1 CACAT
64908779 TAAAATCCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:64913476 original size:22 final size:22
Alignment explanation
Indices: 64913444--64913507 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
64913434 CGGGTACGTC
64913444 ACTAGCACGAATGCTCTTCGGG
1 ACTAGCACGAATGCTCTTCGGG
* * *
64913466 ACTAGCCCGAAT--ACATC---
1 ACTAGCACGAATGCTCTTCGGG
64913483 ACTAGCACGAATGCTCTTCGGG
1 ACTAGCACGAATGCTCTTCGGG
64913505 ACT
1 ACT
64913508 TAGCCCGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 10
0.66 0.13 0.21
Matches are distributed among these distances:
17 11 0.35
19 3 0.10
20 3 0.10
22 14 0.45
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (22 bp):
ACTAGCACGAATGCTCTTCGGG
Found at i:64913524 original size:40 final size:40
Alignment explanation
Indices: 64913215--64913525 Score: 417
Period size: 40 Copynumber: 7.8 Consensus size: 40
64913205 CCAACATGAT
* * * *
64913215 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
64913255 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
64913295 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** *
64913335 TGCTCTTTGAAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
64913375 TGCGCTTCCGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
64913415 TGCTCTTCGAGACTTAGCCCGGGTACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
64913455 TGCTCTTCGGGAC-TAGCCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
64913494 TGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
64913526 CTCAATTCTC
Statistics
Matches: 236, Mismatches: 34, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 36 0.15
40 200 0.85
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:64915048 original size:46 final size:46
Alignment explanation
Indices: 64914980--64915116 Score: 184
Period size: 46 Copynumber: 3.0 Consensus size: 46
64914970 TATATATACA
* * * *
64914980 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
64915026 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTATCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
64915072 TATCTCATACACATTTCGGATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
64915117 ATACATGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:64915150 original size:47 final size:47
Alignment explanation
Indices: 64915095--64915234 Score: 235
Period size: 47 Copynumber: 3.0 Consensus size: 47
64915085 TTTCGGATTA
* * **
64915095 GCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
*
64915142 GCCATTCGGCCTTATCGCACATACGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
64915189 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
64915235 AAAATCCTAA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTG
Found at i:64915186 original size:23 final size:23
Alignment explanation
Indices: 64915159--64915233 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
64915149 GGCCTTATCG
64915159 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
64915182 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
64915204 CACACATACGCATGTTCACATTCAT
1 --CACATACGCATGTTCACATTCAT
64915229 CACAT
1 CACAT
64915234 TAAAATCCTA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 16 0.43
24 11 0.30
25 5 0.14
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:64919300 original size:20 final size:22
Alignment explanation
Indices: 64919277--64919326 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
64919267 CCAATACTTG
*
64919277 CAAACATATA-CC-ATCCAATT
1 CAAACATATAGCCAAGCCAATT
64919297 CAAACATTATAGCCAAGCCAATT
1 CAAACA-TATAGCCAAGCCAATT
*
64919320 CTAACAT
1 CAAACAT
64919327 CTTACATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 6 0.24
21 4 0.16
22 3 0.12
23 12 0.48
ACGTcount: A:0.44, C:0.28, G:0.04, T:0.24
Consensus pattern (22 bp):
CAAACATATAGCCAAGCCAATT
Found at i:64921643 original size:28 final size:28
Alignment explanation
Indices: 64921595--64921703 Score: 121
Period size: 28 Copynumber: 3.9 Consensus size: 28
64921585 TTGCTAGAAC
* * *
64921595 AGAT-ATTGTGACAGAGTCACCAGATAT
1 AGATAATTGTGGCAGAGCCACCAGAAAT
* *
64921622 AGATAATTGTGGCAGGGCCACCAGAAAC
1 AGATAATTGTGGCAGAGCCACCAGAAAT
* **
64921650 AGATATTTGTGGCAGAGCCGTCAGAAAT
1 AGATAATTGTGGCAGAGCCACCAGAAAT
**
64921678 AGATGTTTGTGGCAGAGCCACCAGAA
1 AGATAATTGTGGCAGAGCCACCAGAA
64921704 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 4 0.06
28 64 0.94
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (28 bp):
AGATAATTGTGGCAGAGCCACCAGAAAT
Found at i:64921680 original size:56 final size:55
Alignment explanation
Indices: 64921592--64921703 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 55
64921582 TGGTTGCTAG
* * *
64921592 AACAGATATTGTGACAGAGTCACCAGATATAGATAATTGTGGCAGGGCCACCAGA
1 AACAGATATTGTGACAGAGCCACCAGAAATAGATAATTGTGGCAGAGCCACCAGA
* ** **
64921647 AACAGATATTTGTGGCAGAGCCGTCAGAAATAGATGTTTGTGGCAGAGCCACCAGA
1 AACAGATA-TTGTGACAGAGCCACCAGAAATAGATAATTGTGGCAGAGCCACCAGA
64921703 A
1 A
64921704 CACTTCCTCC
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
55 8 0.17
56 40 0.83
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.21
Consensus pattern (55 bp):
AACAGATATTGTGACAGAGCCACCAGAAATAGATAATTGTGGCAGAGCCACCAGA
Found at i:64926093 original size:29 final size:29
Alignment explanation
Indices: 64926059--64926190 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
64926049 TACTCGATTT
** * *
64926059 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
64926088 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
64926117 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
64926146 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
64926175 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
64926191 ATCTCGTCAC
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:64937733 original size:68 final size:70
Alignment explanation
Indices: 64937661--64937858 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
64937651 ACACCCTGTA
* * * *
64937661 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
64937723 ATAAAT
65 ATAAAT
*
64937729 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
64937794 ATAAAT
65 ATAAAT
*
64937800 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
64937859 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:64937772 original size:41 final size:41
Alignment explanation
Indices: 64937727--64937844 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64937717 TGAAAGATAA
64937727 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64937768 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64937798 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64937839 ATGTAG
1 ATGTAG
64937845 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64937784 original size:71 final size:71
Alignment explanation
Indices: 64937695--64937858 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64937685 GAGATGTATC
64937695 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64937760 AGGACA
66 AGGACA
64937766 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64937831 AGGACA
66 AGGACA
64937837 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64937859 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64945296 original size:68 final size:70
Alignment explanation
Indices: 64945224--64945421 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
64945214 ACACCCTGTA
* * * *
64945224 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
64945286 ATAAAT
65 ATAAAT
*
64945292 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
64945357 ATAAAT
65 ATAAAT
*
64945363 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
64945422 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:64945335 original size:41 final size:41
Alignment explanation
Indices: 64945290--64945407 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64945280 TGAAAGATAA
64945290 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64945331 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64945361 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64945402 ATGTAG
1 ATGTAG
64945408 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64945347 original size:71 final size:71
Alignment explanation
Indices: 64945258--64945421 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
64945248 GAGATGTATC
64945258 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64945323 AGGACA
66 AGGACA
64945329 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64945394 AGGACA
66 AGGACA
64945400 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64945422 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64946832 original size:47 final size:47
Alignment explanation
Indices: 64946763--64946853 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
64946753 TGATTGATCT
64946763 CGGGTCTACTCATTCCTATATTTGTATGAATTTAGTATCTAATATCC
1 CGGGTCTACTCATTCCTATATTTGTATGAATTTAGTATCTAATATCC
64946810 CGGGTCTACTCATTCCTATATTTGTATGAATTTAGTATCTAATA
1 CGGGTCTACTCATTCCTATATTTGTATGAATTTAGTATCTAATA
64946854 AGAAGTTTCC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.26, C:0.18, G:0.13, T:0.43
Consensus pattern (47 bp):
CGGGTCTACTCATTCCTATATTTGTATGAATTTAGTATCTAATATCC
Found at i:64958685 original size:28 final size:28
Alignment explanation
Indices: 64958653--64958748 Score: 106
Period size: 28 Copynumber: 3.4 Consensus size: 28
64958643 TACTTGTATG
* *
64958653 TGGCCCACTAGGCCCAATCTCTTTCATA
1 TGGCCCATTAGGCCCAATCACTTTCATA
*
64958681 TGGCCCATTAGGCCCAATCACATTT-ATG
1 TGGCCCATTAGGCCCAATCAC-TTTCATA
* *
64958709 TGGCCCATTAGTCCCAGATCACATTCATA
1 TGGCCCATTAGGCCCA-ATCACTTTCATA
*
64958738 T-GACCATTAGG
1 TGGCCCATTAGG
64958749 TCTAAATCAC
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
28 46 0.81
29 11 0.19
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACTTTCATA
Found at i:64958745 original size:56 final size:57
Alignment explanation
Indices: 64958649--64958763 Score: 144
Period size: 56 Copynumber: 2.0 Consensus size: 57
64958639 CACATACTTG
* * * *
64958649 TATGTGGCCCACTAGGCCCAATCTCTTTCATATGGCCCATTAGG-CCCAATCACATT
1 TATGTGGCCCACTAGGCCCAATCACATTCATATGGACCATTAGGTCCAAATCACATT
* * *
64958705 TATGTGGCCCATTAGTCCCAGATCACATTCATAT-GACCATTAGGTCTAAATCACATT
1 TATGTGGCCCACTAGGCCCA-ATCACATTCATATGGACCATTAGGTCCAAATCACATT
64958762 TA
1 TA
64958764 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 27 0.54
57 23 0.46
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGTGGCCCACTAGGCCCAATCACATTCATATGGACCATTAGGTCCAAATCACATT
Found at i:64963173 original size:28 final size:29
Alignment explanation
Indices: 64963141--64963205 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 29
64963131 ACATACCTGT
* * *
64963141 ATATGGCCCACTAGGCCCA-ATCTCTTTC
1 ATATGGCCCACTAGGCCCAGACCACATTC
*
64963169 ATATGGCCCATTAGGCCCAGACCACATTC
1 ATATGGCCCACTAGGCCCAGACCACATTC
64963198 ATATGGCC
1 ATATGGCC
64963206 ATTAGTACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 18 0.56
29 14 0.44
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAGACCACATTC
Found at i:64963222 original size:28 final size:29
Alignment explanation
Indices: 64963166--64963224 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
64963156 CCCAATCTCT
* *
64963166 TTCATATGGCCCATTAGGCCCAGACCACA
1 TTCATATGGCCCATTAGGACCAAACCACA
* *
64963195 TTCATATGG-CCATTAGTACCAAATCACA
1 TTCATATGGCCCATTAGGACCAAACCACA
64963223 TT
1 TT
64963225 TACAGTCATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 17 0.65
29 9 0.35
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
TTCATATGGCCCATTAGGACCAAACCACA
Found at i:64963310 original size:17 final size:18
Alignment explanation
Indices: 64963288--64963321 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64963278 TTCCTATTAT
64963288 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
64963305 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
64963322 TCCGACCCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:64963466 original size:16 final size:16
Alignment explanation
Indices: 64963439--64963497 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
64963429 GTAGCCAAGC
*
64963439 TTTCGACTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
64963455 TTTTGGCTTTTCAGCA
1 TTTCGGCTTTTCGGCA
* *
64963471 TTTCAGCTTTTTGGCA
1 TTTCGGCTTTTCGGCA
64963487 TTTCGGCTTTT
1 TTTCGGCTTTT
64963498 GTCAATCTAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.10, C:0.20, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:64986275 original size:46 final size:47
Alignment explanation
Indices: 64986169--64986290 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
64986159 TGTCTTCGAC
** * *
64986169 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
64986219 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
64986265 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
64986291 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:64988761 original size:122 final size:120
Alignment explanation
Indices: 64988545--64988762 Score: 287
Period size: 122 Copynumber: 1.8 Consensus size: 120
64988535 AATTATGTGG
* * * *
64988545 AATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATGATACCGGGCTA
1 AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATGATACCGGGCTA
* * * **
64988610 AGTCCCGAAGGCTATTATGCTAGTGATTATAATTGTGTTTAGCCTTAGTAACGAA
66 AGTCCCCAAGACAATTATGCTAGAAATTATAATTGTGTTTAGCCTTAGTAACGAA
*
64988665 AATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCGG
1 AATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATGATA-CCGG
*
64988729 GCTAAG-CCCCAAGACAATTATGCTGGAAATTATA
62 GCTAAGTCCCCAAGACAATTATGCTAGAAATTATA
64988763 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
120 15 0.18
122 55 0.66
123 13 0.16
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (120 bp):
AATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATGATACCGGGCTA
AGTCCCCAAGACAATTATGCTAGAAATTATAATTGTGTTTAGCCTTAGTAACGAA
Found at i:64988885 original size:40 final size:40
Alignment explanation
Indices: 64988758--64988887 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
64988748 ATGCTGGAAA
* * *
64988758 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64988798 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64988838 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64988878 TTATATCCGG
1 TTATATCCGG
64988888 TTATATTTCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64992690 original size:28 final size:28
Alignment explanation
Indices: 64992625--64992725 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
64992615 ATAGTGAATC
*
64992625 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
64992654 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
64992682 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
64992712 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64992726 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:65008695 original size:40 final size:40
Alignment explanation
Indices: 65008650--65008816 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65008640 CGGAATATAA
65008650 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65008690 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
65008730 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
65008770 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65008809 CCGGATAT
1 CCGGATAT
65008817 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65008800 original size:80 final size:79
Alignment explanation
Indices: 65008650--65008816 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
65008640 CGGAATATAA
* *
65008650 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
65008715 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
65008730 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
65008792 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
65008809 CCGGATAT
1 CCGGATAT
65008817 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:65009665 original size:17 final size:19
Alignment explanation
Indices: 65009642--65009687 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
65009632 AAGAAGCATG
65009642 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
65009660 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
65009678 AATCATGCTC
1 AATCATGCTC
65009688 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:65012757 original size:46 final size:46
Alignment explanation
Indices: 65012594--65012763 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
65012584 GGTTGAGCAT
*
65012594 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * *
65012638 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
65012683 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
65012731 CCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65012764 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
44 22 0.22
45 7 0.07
46 31 0.30
47 27 0.26
48 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:65015235 original size:22 final size:22
Alignment explanation
Indices: 65015207--65015251 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
65015197 ATTTCGTGTA
65015207 AGACCACATTTGGGATGTTGGC
1 AGACCACATTTGGGATGTTGGC
65015229 AGACCACATTTGGGATGTTGGC
1 AGACCACATTTGGGATGTTGGC
65015251 A
1 A
65015252 TCGACTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (22 bp):
AGACCACATTTGGGATGTTGGC
Found at i:65015660 original size:25 final size:25
Alignment explanation
Indices: 65015626--65015676 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
65015616 TATGGCTTAC
65015626 TAAGCTTTTGAAAGCTTACTTTGTG
1 TAAGCTTTTGAAAGCTTACTTTGTG
65015651 TAAGCTTTTGAAAGCTTACTTTGTG
1 TAAGCTTTTGAAAGCTTACTTTGTG
65015676 T
1 T
65015677 GTGTTTGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.45
Consensus pattern (25 bp):
TAAGCTTTTGAAAGCTTACTTTGTG
Found at i:65026380 original size:10 final size:10
Alignment explanation
Indices: 65026354--65026405 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
65026344 TGCAAATCTG
*
65026354 TCAAAAATAA
1 TCAAAATTAA
65026364 TCAAAATTAA
1 TCAAAATTAA
*
65026374 TCAAAATTTGAT
1 TCAAAA-TT-AA
*
65026386 TTAAAATTAA
1 TCAAAATTAA
*
65026396 TTAAAATTAA
1 TCAAAATTAA
65026406 ACATGTTCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 26 0.72
11 4 0.11
12 6 0.17
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.35
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:65028573 original size:42 final size:42
Alignment explanation
Indices: 65028515--65028631 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 42
65028505 TAGGGTTATT
* *
65028515 GAGATAACGTGTAAGACCATATCTGGGATATGAAATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGAAATCGATAC
* * **
65028557 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGAAATCGATAC
* *
65028600 GAGATTACATGTAAAACCATATCTGGGATATG
1 GAGATTACGTGTAAGACCATATCTGGGATATG
65028632 GCATTGGTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.47
43 33 0.53
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGAAATCGATAC
Found at i:65028613 original size:43 final size:42
Alignment explanation
Indices: 65028515--65028635 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 42
65028505 TAGGGTTATT
* ** *
65028515 GAGATAACGTGTAAGACCATATCTGGGATATGAAATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
* *
65028557 GAGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC
1 GAGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
65028600 GAGATTACATGTAAAACCATATCTGGGATATGGCAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCAT
65028636 TGGTATGGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:65031446 original size:20 final size:20
Alignment explanation
Indices: 65031421--65031468 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
65031411 GGAGGAAGTT
65031421 GTGTTTGACTAAAACACCAA
1 GTGTTTGACTAAAACACCAA
65031441 GTGTTTGACTAAAACACCAA
1 GTGTTTGACTAAAACACCAA
*
65031461 GAGTTTGA
1 GTGTTTGA
65031469 ACAGATTTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (20 bp):
GTGTTTGACTAAAACACCAA
Found at i:65034868 original size:29 final size:28
Alignment explanation
Indices: 65034814--65034869 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
65034804 TAAAAATGTA
*
65034814 TTTTAAAATAATTTTATATAATTTTATT
1 TTTTAAAATAATTTTATATAAATTTATT
65034842 TTTTAAAATATATTTT-TACTAAATTTAT
1 TTTTAAAATA-ATTTTATA-TAAATTTAT
65034870 AAAAAAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTTAAAATAATTTTATATAAATTTATT
Found at i:65038433 original size:45 final size:45
Alignment explanation
Indices: 65038345--65038501 Score: 194
Period size: 45 Copynumber: 3.5 Consensus size: 45
65038335 GATATTTCTA
*
65038345 CTGCTAGGCTCGAA-GCCCG-ATA-TCATTTCACCGGCATTATAGC
1 CTGCTAGGCTCAAAGGCCCGAATAGT-ATTTCACCGGCATTATAGC
* * *
65038388 CTGCTAGGCTCGAAGTCCCGAATAGTATTTCACCGGCATTGTAGC
1 CTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATTATAGC
* * * * * *
65038433 CTGCTAAGCTCAAAGGCTCGAAAAGTATCTCACCAGCATCATAGC
1 CTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATTATAGC
65038478 CTGCTAGGCTCAAAGGCCCGAATA
1 CTGCTAGGCTCAAAGGCCCGAATA
65038502 TTACTGTACG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
43 14 0.14
44 4 0.04
45 78 0.80
46 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (45 bp):
CTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATTATAGC
Found at i:65047344 original size:29 final size:29
Alignment explanation
Indices: 65047311--65047471 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
65047301 GTGACGAGAT
65047311 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
65047340 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
65047369 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
65047398 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
65047427 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
65047456 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65047472 AAATCGAGTA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 115 0.98
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:65056864 original size:68 final size:70
Alignment explanation
Indices: 65056792--65056989 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
65056782 ACACCCTGTA
* * * *
65056792 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
65056854 ATAAAT
65 ATAAAT
*
65056860 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
65056925 ATAAAT
65 ATAAAT
*
65056931 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
65056990 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:65056903 original size:41 final size:41
Alignment explanation
Indices: 65056858--65056975 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
65056848 TGAAAGATAA
65056858 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
65056899 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65056929 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
65056970 ATGTAG
1 ATGTAG
65056976 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:65056915 original size:71 final size:71
Alignment explanation
Indices: 65056826--65056989 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65056816 GAGATGTATC
65056826 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65056891 AGGACA
66 AGGACA
65056897 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
65056962 AGGACA
66 AGGACA
65056968 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
65056990 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:65067122 original size:30 final size:30
Alignment explanation
Indices: 65067087--65067143 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
65067077 CCGAAGCTAA
65067087 TTAAATCGCACACTTAG-TGCCAAAGCTAGT
1 TTAAATCGCACACTTAGCT-CCAAAGCTAGT
*
65067117 TTAAATCGTACACTTAGCTCCAAAGCT
1 TTAAATCGCACACTTAGCTCCAAAGCT
65067144 TCTGATTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (30 bp):
TTAAATCGCACACTTAGCTCCAAAGCTAGT
Found at i:65068566 original size:27 final size:27
Alignment explanation
Indices: 65068524--65068651 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
65068514 CGTTCCTGAA
* * *
65068524 CCCTTATGTGACAAAAAGACGATATTG
1 CCCTTATGTGATAAAATGACAATATTG
65068551 CCCTTATGTGATAAAATGACAATATTG
1 CCCTTATGTGATAAAATGACAATATTG
* *
65068578 CCTTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGACAATATTG
* *
65068605 CCCTTATGTGGTAAAATGACAATATTA
1 CCCTTATGTGATAAAATGACAATATTG
* * *
65068632 CCCTCATATGGTAAAATGAC
1 CCCTTATGTGATAAAATGAC
65068652 CTAAATACCC
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACAATATTG
Found at i:65068660 original size:27 final size:27
Alignment explanation
Indices: 65068562--65068693 Score: 79
Period size: 27 Copynumber: 4.9 Consensus size: 27
65068552 CCTTATGTGA
* *** * *
65068562 TAAAATGACAATATTGCCTTTATGTGA
1 TAAAATGACAATATTACCCCCATATGG
* * ** *
65068589 TAAAATGACGATATTGCCCTTATGTGG
1 TAAAATGACAATATTACCCCCATATGG
*
65068616 TAAAATGACAATATTACCCTCATATGG
1 TAAAATGACAATATTACCCCCATATGG
*
65068643 TAAAATGACCTAA-A-TACCCCCATAAGG
1 TAAAATGA-C-AATATTACCCCCATATGG
* ** *
65068670 TAAAATAACTGTAATACCCCCATA
1 TAAAATGACAATATTACCCCCATA
65068694 AAATAAAATG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.02
27 83 0.93
28 2 0.02
29 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (27 bp):
TAAAATGACAATATTACCCCCATATGG
Found at i:65072332 original size:27 final size:27
Alignment explanation
Indices: 65072290--65072396 Score: 151
Period size: 27 Copynumber: 4.0 Consensus size: 27
65072280 CGTACTTGAA
* * * *
65072290 CCCTTATGTGAGAAAATGGCGACATTT
1 CCCTTATGTGATAAAATGACGATATTG
65072317 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGACGATATTG
*
65072344 CCCTTATGTGATAAAATGATGATATTG
1 CCCTTATGTGATAAAATGACGATATTG
* *
65072371 CCCTTATGTGGTAAAATGACAATATT
1 CCCTTATGTGATAAAATGACGATATT
65072397 ACCTTCATGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACGATATTG
Found at i:65072410 original size:27 final size:27
Alignment explanation
Indices: 65072290--65072417 Score: 143
Period size: 27 Copynumber: 4.7 Consensus size: 27
65072280 CGTACTTGAA
* * *
65072290 CCCTTATGTGAG-AAAATGGCGACATTT
1 CCCTTATGTG-GTAAAATGACGATATTG
*
65072317 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGGTAAAATGACGATATTG
* *
65072344 CCCTTATGTGATAAAATGATGATATTG
1 CCCTTATGTGGTAAAATGACGATATTG
*
65072371 CCCTTATGTGGTAAAATGACAATATT-
1 CCCTTATGTGGTAAAATGACGATATTG
* *
65072397 ACCTTCATGGGGTAAAATGAC
1 CCCTT-ATGTGGTAAAATGAC
65072418 CAAAATACCC
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 4 0.04
27 85 0.96
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.32
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACGATATTG
Found at i:65072426 original size:27 final size:26
Alignment explanation
Indices: 65072372--65072426 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
65072362 ATGATATTGC
* *
65072372 CCTTATGTGGTAAAATGACAATATTA
1 CCTTATGGGGTAAAATGACAATAATA
65072398 CCTTCATGGGGTAAAATGACCAA-AATA
1 CCTT-ATGGGGTAAAATGA-CAATAATA
65072425 CC
1 CC
65072427 CCCATAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.16
27 18 0.72
28 3 0.12
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (26 bp):
CCTTATGGGGTAAAATGACAATAATA
Found at i:65077594 original size:30 final size:30
Alignment explanation
Indices: 65077546--65077602 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
65077536 TTTACGAGCA
***
65077546 TAGGGGCAAAAGTGTAATTTTGATAAAGTT
1 TAGGGGCAAAAACATAATTTTGATAAAGTT
*
65077576 TAGGGGCAAAAACATAATTTTGCTAAA
1 TAGGGGCAAAAACATAATTTTGATAAA
65077603 ATATGGTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAACATAATTTTGATAAAGTT
Found at i:65081251 original size:50 final size:50
Alignment explanation
Indices: 65081137--65081414 Score: 299
Period size: 50 Copynumber: 5.5 Consensus size: 50
65081127 GTGAGAACAC
* * * *
65081137 GTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGTCACAT
* * *
65081189 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* * * * * * * **
65081239 GTGTCGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCATGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGTCACAT
* * *
65081290 GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
* **
65081340 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTAGGTCGTAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
65081390 GTGTAGTACTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
65081415 ACTGTATCAG
Statistics
Matches: 192, Mismatches: 31, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
48 2 0.01
49 3 0.02
50 121 0.63
51 38 0.20
52 28 0.15
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACAT
Found at i:65081320 original size:101 final size:100
Alignment explanation
Indices: 65081178--65081414 Score: 305
Period size: 101 Copynumber: 2.4 Consensus size: 100
65081168 TAAGACAGTT
* * * * * *
65081178 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTTAGGTCGCATGTGT
1 TTAGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
* * *
65081243 CGTACTAAGTGCAGGCTACTATGCGTACCCGA-TA
66 AGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
* * *
65081277 GCTTCGATCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACATGT
1 --TTAGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGT
*
65081342 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA
64 GTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
* * *
65081379 TTAGGTCGTATGTGTAGTACTAAGTGCAGGCTACTA
1 TTAGATCATGTGTGTAGTACTAAGTGCAGGCTACTA
65081415 ACTGTATCAG
Statistics
Matches: 117, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
100 31 0.26
101 84 0.72
102 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (100 bp):
TTAGATCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTACGCGTACCAGATTA
Found at i:65085394 original size:56 final size:56
Alignment explanation
Indices: 65085334--65085468 Score: 198
Period size: 56 Copynumber: 2.4 Consensus size: 56
65085324 TCTCAGACAG
65085334 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATTAAACGT
* *** * **
65085390 GGTCTTACTCGGACACATATATTGGAATCACTTATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATTAAACGT
*
65085446 GGTCTTACTTGCACACATATATC
1 GGTCTTACTCGCACACATATATC
65085469 GATGCCATGA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 69 1.00
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATTAAACGT
Found at i:65093641 original size:28 final size:28
Alignment explanation
Indices: 65093595--65093663 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
65093585 TTTAAAACCC
*
65093595 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
65093622 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
65093650 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
65093664 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:65095099 original size:20 final size:20
Alignment explanation
Indices: 65095076--65095113 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65095066 CACATCCAAA
*
65095076 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
65095096 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
65095114 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:65097952 original size:43 final size:42
Alignment explanation
Indices: 65097797--65097953 Score: 113
Period size: 43 Copynumber: 3.7 Consensus size: 42
65097787 TGTGTTATCG
* * *
65097797 TGTAAGACCATGTTTGGGACGTTGGCATCGAT-TTGTGATTTACT
1 TGTAAGACCACGTCTGGGACGTTGGCATC-ATATT-TGA-TTACA
* * * * * ***
65097841 TGTAAGAGCATGTCTGGGACATTGCCATCGTATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
* * *
65097883 TGTAACACC-CGGTATGGGATAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATATTTGATTACA
65097926 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
65097954 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 22, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
42 23 0.27
43 34 0.40
44 28 0.33
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:65099990 original size:12 final size:12
Alignment explanation
Indices: 65099973--65100007 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
65099963 ATATATATAT
*
65099973 ATACATGTCATG
1 ATACATATCATG
65099985 ATACATATCATG
1 ATACATATCATG
65099997 ATACATATCAT
1 ATACATATCAT
65100008 TCTCTTTCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (12 bp):
ATACATATCATG
Found at i:65100148 original size:18 final size:18
Alignment explanation
Indices: 65100125--65100159 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
65100115 CTCCATTCCA
65100125 CATCCTTAATGTATATAG
1 CATCCTTAATGTATATAG
65100143 CATCCTTAATGTATATA
1 CATCCTTAATGTATATA
65100160 CCATACTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (18 bp):
CATCCTTAATGTATATAG
Found at i:65101206 original size:67 final size:64
Alignment explanation
Indices: 65101066--65101250 Score: 187
Period size: 67 Copynumber: 2.9 Consensus size: 64
65101056 CATATAGTTC
* * * * * * *
65101066 AGCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCG
1 AGCTCGCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTACATATATCCCG
65101128 T
64 T
* * * *
65101129 AGCTCTCTTGTCTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACATATATCCC
1 AGCTCGCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACATATATCCC
65101194 GT
63 GT
* *
65101196 AGCTCGCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAT
1 AGCTCGCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACAT
65101251 CATAATGTCT
Statistics
Matches: 102, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 29 0.28
66 23 0.23
67 30 0.29
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (64 bp):
AGCTCGCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATATATCCCGT
Found at i:65102019 original size:30 final size:30
Alignment explanation
Indices: 65101984--65102044 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
65101974 TCCTTAACTC
65101984 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
65102014 AAACTTTTTCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
65102044 A
1 A
65102045 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:65102780 original size:13 final size:12
Alignment explanation
Indices: 65102746--65102777 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
65102736 TTTCACACAA
65102746 TCACAAATTTCT
1 TCACAAATTTCT
65102758 TCACGAAATTTCT
1 TCAC-AAATTTCT
65102771 TCACAAA
1 TCACAAA
65102778 ATTAGCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (12 bp):
TCACAAATTTCT
Done.