Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 207 of 318
Found at i:65106559 original size:41 final size:41
Alignment explanation
Indices: 65106388--65106547 Score: 168
Period size: 41 Copynumber: 3.9 Consensus size: 41
65106378 GGGTCTAAAT
65106388 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
65106429 CCGAACTTAGTTTCGAAGGGCTTTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * *
65106469 CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
*
65106510 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTACTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
65106548 GAATCGGGCT
Statistics
Matches: 99, Mismatches: 13, Indels: 16
0.77 0.10 0.12
Matches are distributed among these distances:
39 5 0.05
40 32 0.32
41 57 0.58
42 2 0.02
43 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:65112957 original size:44 final size:44
Alignment explanation
Indices: 65112909--65113021 Score: 154
Period size: 44 Copynumber: 2.6 Consensus size: 44
65112899 TGTGTTATCA
* *
65112909 TGTAAGACCACGTCTGGGACATTGGCATTGATTTGTGAATTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTACG
* * * *
65112953 TGTAAGATCACGTCTAGAACATTGGCATCGATTTGGGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTACG
**
65112997 TGTAAGACCATATCTGGGACATTGG
1 TGTAAGACCACGTCTGGGACATTGG
65113022 TGATAAACTG
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTACG
Found at i:65114463 original size:43 final size:42
Alignment explanation
Indices: 65114396--65114487 Score: 121
Period size: 43 Copynumber: 2.2 Consensus size: 42
65114386 ACGTATCAAT
* * * * *
65114396 TGGCATTGTATTTGATTTCGTGTAAGACCATGTCTGGGACAG
1 TGGCATTATATTTGATTACCTGTAAGACCACGTCTGAGACAG
*
65114438 TGGCATTAATATTTGATTACCTGTAAGACCACGTCTGAGACAT
1 TGGCATT-ATATTTGATTACCTGTAAGACCACGTCTGAGACAG
65114481 TGGCATT
1 TGGCATT
65114488 GTACGAGCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 7 0.16
43 36 0.84
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (42 bp):
TGGCATTATATTTGATTACCTGTAAGACCACGTCTGAGACAG
Found at i:65117182 original size:40 final size:40
Alignment explanation
Indices: 65117110--65117373 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
65117100 AACCCAAGTA
* * * *
65117110 CCTTCGGGATTTAA-CCGGATATAGCAAATCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
* *
65117149 CCTTTGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
*
65117189 CCTTCGGGACTTAGA-CCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTA-ACCCGGATATAGTAACTAGCACAAATG
* * *
65117229 CCTTCGGGAGTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCAC-AAATG
* * * * * *
65117270 CCTTCAGGTCTTATCCCGGATATCGTCACTAGCGCAAATG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
* *
65117310 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-TG
* *
65117351 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATAT
65117374 CATCCGAATA
Statistics
Matches: 199, Mismatches: 21, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 12 0.06
40 128 0.64
41 59 0.30
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATG
Found at i:65117312 original size:81 final size:81
Alignment explanation
Indices: 65117140--65117374 Score: 337
Period size: 81 Copynumber: 2.9 Consensus size: 81
65117130 ATAGCAAATC
* * * * * *
65117140 GCACAAATGCCTTTGGGACTTAACCCGGATATAGTAACTCGCAC-AAATGCCTTCGGGACTTAGA
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGC
* *
65117204 CCGGATATAGTAACTC
66 CCGGATATCGTAACTA
* * *
65117220 GCACAAATGCCTTCGGGAGTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCAGGTCTTATC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGC
*
65117285 CCGGATATCGTCACTA
66 CCGGATATCGTAACTA
* *
65117301 GCGCAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGC
65117366 CCGGATATC
66 CCGGATATC
65117375 ATCCGAATAA
Statistics
Matches: 137, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 39 0.28
81 98 0.72
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (81 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGC
CCGGATATCGTAACTA
Found at i:65117345 original size:121 final size:121
Alignment explanation
Indices: 65117105--65117373 Score: 337
Period size: 121 Copynumber: 2.2 Consensus size: 121
65117095 TTCCAAACCC
* * * * **
65117105 AAGTACCTTCGGGATTTA-ACCGGATATAGCAAATCGCACAAATGCCTTTGGGACTTAACCCGGA
1 AAGTGCCTTCGGGACTTAGCCCGGATATAGCAAATAGCACAAATGCCTTCAGGACTTAACCCGGA
* *
65117169 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGACCGGATATAGTAACTCGCACA
66 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGACCGGATATAGTAACTAGCACA
* * * *
65117225 AA-TGCCTTCGGGAGTTAGCCCGGATATAGTC-ACTAGCACAAAATGCCTTCAGGTCTTATCCCG
1 AAGTGCCTTCGGGACTTAGCCCGGATATAG-CAAATAGCAC-AAATGCCTTCAGGACTTAACCCG
* * * * *
65117288 GATATCGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACA
64 GATATAGTAACTAGCACAAATGCCTTCGGGACTTAGACCGGATATAGTAACTAGCACA
*
65117346 AAGTGCCTTCGGGTCTTAGCCCGGATAT
1 AAGTGCCTTCGGGACTTAGCCCGGATAT
65117374 CATCCGAATA
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
119 13 0.10
120 18 0.14
121 73 0.57
122 23 0.18
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (121 bp):
AAGTGCCTTCGGGACTTAGCCCGGATATAGCAAATAGCACAAATGCCTTCAGGACTTAACCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGACCGGATATAGTAACTAGCACA
Found at i:65125428 original size:40 final size:40
Alignment explanation
Indices: 65125372--65125619 Score: 325
Period size: 40 Copynumber: 6.2 Consensus size: 40
65125362 GGATTTAACT
* * * *
65125372 GGATATAGCAAATCGCACAAATGCCTTTGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
* *
65125412 AGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
* *
65125452 GGATATAGTAACTCGGACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
* * *
65125492 GGATATAGTCACTAGCACAAAATGCCTTCGAGTCTTAGCCC
1 GGATATAGTAACTAGCAC-AAATGCCTTCGGGACTTAGCCC
* * *
65125533 GGATATCGTCACTAGCGCAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
* * *
65125573 GAATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCC
1 GGATATAGTAACTAGCACAAA-TGCCTTCGGGACTTAGCCC
65125614 GGATAT
1 GGATAT
65125620 CATCCGAATA
Statistics
Matches: 186, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
40 127 0.68
41 59 0.32
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
GGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCC
Found at i:65125558 original size:81 final size:81
Alignment explanation
Indices: 65125388--65125620 Score: 344
Period size: 81 Copynumber: 2.9 Consensus size: 81
65125378 AGCAAATCGC
* * * * *
65125388 ACAAATGCCTTTGGGACTTAGCCCAGATATAGTAACTCGCAC-AAATGCCTTCGGGACTTAGCCC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCC
* *
65125452 GGATATAGTAACTCGG
66 GGATATCGTAACTAGG
*
65125468 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGAGTCTTAGCCC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCC
*
65125533 GGATATCGTCACTAGCG
66 GGATATCGTAACTAG-G
* *
65125550 -CAAATGCCTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAAGTGCCTTCGGGTCTTAGCCC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCC
65125614 GGATATC
66 GGATATC
65125621 ATCCGAATAA
Statistics
Matches: 139, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
80 38 0.27
81 100 0.72
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (81 bp):
ACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCC
GGATATCGTAACTAGG
Found at i:65134178 original size:46 final size:46
Alignment explanation
Indices: 65134055--65134181 Score: 202
Period size: 46 Copynumber: 2.8 Consensus size: 46
65134045 TGTAACCCGC
* * *
65134055 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCAT
*
65134101 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-AGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAG-CATTCGCAT
65134147 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
65134182 GATGCTCAAC
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCAT
Found at i:65141687 original size:40 final size:40
Alignment explanation
Indices: 65141591--65141769 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
65141581 CGAATGGTGT
* * * *
65141591 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
65141632 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
65141672 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
65141712 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
65141752 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
65141770 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:65141730 original size:80 final size:80
Alignment explanation
Indices: 65141591--65141783 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
65141581 CGAATGGTGT
* * * *
65141591 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
65141656 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
65141672 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
65141736 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
65141752 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
65141784 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:65141790 original size:40 final size:40
Alignment explanation
Indices: 65141712--65141795 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
65141702 GTTATTAAAT
* * *
65141712 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
65141752 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
65141792 CCGG
1 CCGG
65141796 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:65144563 original size:13 final size:13
Alignment explanation
Indices: 65144544--65144583 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
65144534 AAAGTAATCA
65144544 CACACGGGCGTGT
1 CACACGGGCGTGT
*
65144557 TACACGGGCGTGT
1 CACACGGGCGTGT
*
65144570 CACACAGGCGTGT
1 CACACGGGCGTGT
65144583 C
1 C
65144584 CCTGCCGTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:65151325 original size:2 final size:2
Alignment explanation
Indices: 65151318--65151354 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
65151308 GGTCATTTTG
*
65151318 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
65151355 TATGGTTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:65154559 original size:17 final size:18
Alignment explanation
Indices: 65154517--65154565 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65154507 AGTTGAAAAG
65154517 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65154536 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65154553 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65154566 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65155454 original size:40 final size:40
Alignment explanation
Indices: 65155388--65155554 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65155378 AAATTGAATG
* * *
65155388 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65155427 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65155467 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65155507 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65155547 ATATCCGG
1 ATATCCGG
65155555 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65162561 original size:17 final size:18
Alignment explanation
Indices: 65162519--65162567 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65162509 AGTTGAAAAG
65162519 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65162538 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65162555 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65162568 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65163893 original size:40 final size:40
Alignment explanation
Indices: 65163848--65164014 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
65163838 CGGAATATAA
65163848 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
65163888 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
65163928 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
65163968 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
65164007 CCGGATAT
1 CCGGATAT
65164015 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65163998 original size:80 final size:79
Alignment explanation
Indices: 65163864--65164012 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
65163854 ATAACCACGT
*
65163864 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
65163929 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
65163944 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
65164007 CCGGAT
64 CCGGAT
65164013 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:65171877 original size:40 final size:39
Alignment explanation
Indices: 65171832--65171961 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
65171822 CGGAATATAA
65171832 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
65171872 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
65171912 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
65171952 CCGGATATAA
1 CCGGATATAA
65171962 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:65171976 original size:40 final size:40
Alignment explanation
Indices: 65171848--65171999 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
65171838 ATAACCATGT
* * *
65171848 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
65171888 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
65171928 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
65171968 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
65172000 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:65171982 original size:80 final size:80
Alignment explanation
Indices: 65171848--65171997 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
65171838 ATAACCATGT
*
65171848 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
65171912 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
65171928 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
65171991 CCCGGAT
64 CCCGGAT
65171998 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:65175898 original size:47 final size:47
Alignment explanation
Indices: 65175741--65175912 Score: 197
Period size: 47 Copynumber: 3.6 Consensus size: 47
65175731 TGTGAGCTAG
* *
65175741 TGTAAGACCATGTCTAGGACATGGCATCAACTTGATGGATGAGTCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGTCAA
* * * * **
65175788 TGTAAGACCATGTTTGGGAGATGG-AGTCGGCCTCGATTTCAAT-AGTCAA
1 TGTAAGACCATGTCTGGGACATGGCA-TC-GACTTGA--TGGATGAGTCAA
*
65175837 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAG-CTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGTC-AA
65175884 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
65175913 GCATTATACC
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
46 5 0.05
47 55 0.53
48 9 0.09
49 30 0.29
50 4 0.04
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGTCAA
Found at i:65181423 original size:23 final size:23
Alignment explanation
Indices: 65181386--65181483 Score: 85
Period size: 23 Copynumber: 4.3 Consensus size: 23
65181376 AGACTCACCA
* * *
65181386 CAGCTCATATAAGCTTACCGTTT
1 CAGCTCTTATGAGCTTACCATTT
*
65181409 CAGCTCTTATGAGCTCACC-TTT
1 CAGCTCTTATGAGCTTACCATTT
* *
65181431 CATCTCTT-TGGAGTTTACCATTT
1 CAGCTCTTAT-GAGCTTACCATTT
* *
65181454 CAG-TCCTTAGGGGCTTACCATTT
1 CAGCT-CTTATGAGCTTACCATTT
65181477 CAGCTCT
1 CAGCTCT
65181484 ATGGAACTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
21 1 0.02
22 18 0.30
23 40 0.67
24 1 0.02
ACGTcount: A:0.19, C:0.28, G:0.15, T:0.38
Consensus pattern (23 bp):
CAGCTCTTATGAGCTTACCATTT
Found at i:65181493 original size:23 final size:23
Alignment explanation
Indices: 65181397--65181495 Score: 80
Period size: 23 Copynumber: 4.3 Consensus size: 23
65181387 AGCTCATATA
*
65181397 AGCTTACCGTTTCAGCTCTTAT-G
1 AGCTTACCATTTCAGCTC-TATGG
* * *
65181420 AGCTCACC-TTTCATCTCTTTGG
1 AGCTTACCATTTCAGCTCTATGG
*
65181442 AGTTTACCATTTCAG-TCCT-TAGG
1 AGCTTACCATTTCAGCT-CTAT-GG
*
65181465 GGCTTACCATTTCAGCTCTATGG
1 AGCTTACCATTTCAGCTCTATGG
*
65181488 AACTTACC
1 AGCTTACC
65181496 GTTCAACTCA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
21 2 0.03
22 17 0.28
23 39 0.65
24 2 0.03
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.37
Consensus pattern (23 bp):
AGCTTACCATTTCAGCTCTATGG
Found at i:65186769 original size:93 final size:93
Alignment explanation
Indices: 65186657--65186828 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
65186647 CGCCCATAAG
* *
65186657 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
65186721 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
65186750 CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
65186815 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
65186829 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:65186823 original size:46 final size:46
Alignment explanation
Indices: 65186650--65186825 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
65186640 TGTAACCCGC
* *
65186650 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
65186696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
65186746 -C-TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
65186789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
65186826 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65191462 original size:43 final size:43
Alignment explanation
Indices: 65191407--65191527 Score: 124
Period size: 42 Copynumber: 2.8 Consensus size: 43
65191397 GACACATGCC
**
65191407 TCGAT-TTAGATTTACATATAAGACCACGTCTGGGACATTGGCA
1 TCGATATT-GATTTACATATAAGACCACGTCTGGGACAAAGGCA
* * * *
65191450 TCG-TATCTGATTT-CGTGTAAGACC-CTATTTGGGACAAAGGCA
1 TCGATAT-TGATTTACATATAAGACCAC-GTCTGGGACAAAGGCA
*
65191492 TCGATATTGAATTACATATAAGACCACGTCTGGGAC
1 TCGATATTGATTTACATATAAGACCACGTCTGGGAC
65191528 GTCGGCATTG
Statistics
Matches: 61, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
41 1 0.02
42 30 0.49
43 28 0.46
44 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (43 bp):
TCGATATTGATTTACATATAAGACCACGTCTGGGACAAAGGCA
Found at i:65191535 original size:85 final size:85
Alignment explanation
Indices: 65191377--65191535 Score: 221
Period size: 85 Copynumber: 1.9 Consensus size: 85
65191367 GTCTGCGACA
* * * * * *
65191377 TCGTGTAAGACCTTGTGTGGGACACATGCCTCGATTTAGATTTACATATAAGACCACGTCTGGGA
1 TCGTGTAAGACCCTATGTGGGACAAAGGCATCGATTTAGAATTACATATAAGACCACGTCTGGGA
*
65191442 CATTGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
*
65191462 TCGTGTAAGACCCTATTTGGGACAAAGGCATCGATATT-GAATTACATATAAGACCACGTCTGGG
1 TCGTGTAAGACCCTATGTGGGACAAAGGCATCGAT-TTAGAATTACATATAAGACCACGTCTGGG
*
65191526 ACGTCGGCAT
65 ACATCGGCAT
65191536 TGTACTTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 62 0.97
86 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCCTATGTGGGACAAAGGCATCGATTTAGAATTACATATAAGACCACGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:65193907 original size:64 final size:63
Alignment explanation
Indices: 65193758--65194009 Score: 204
Period size: 68 Copynumber: 3.8 Consensus size: 63
65193748 TACAGATAGT
* ** * * * *
65193758 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
65193822 TATA
61 TA-A
* * *
65193826 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
65193890 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAACGACACCATGTAGAGAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTG---TACACCATGTAGACAAGAGAGCTACGAGAT
65193955 AA
62 AA
* * *
65193957 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTGTACACCATGTAG-ACAAGAGAGC
65194010 CGAACTATAT
Statistics
Matches: 150, Mismatches: 27, Indels: 19
0.77 0.14 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.11
64 27 0.18
65 2 0.01
66 24 0.16
67 32 0.21
68 46 0.31
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:65198294 original size:68 final size:66
Alignment explanation
Indices: 65198222--65198393 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
65198212 CATCATGTGT
* * * *
65198222 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
65198285 TGTAG
62 TGTAG
** * *
65198290 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
65198355 AG
65 AG
* * * *
65198357 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
65198394 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:65198327 original size:64 final size:64
Alignment explanation
Indices: 65198246--65198429 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
65198236 AGACATTATG
* * *
65198246 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
65198310 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
65198375 AA
63 AA
* * *
65198377 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
65198430 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:65205214 original size:15 final size:17
Alignment explanation
Indices: 65205196--65205227 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
65205186 TAGCATAATT
65205196 TACC-AACTCA-ATTCA
1 TACCAAACTCACATTCA
65205211 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
65205228 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 6 0.40
17 5 0.33
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:65207699 original size:23 final size:24
Alignment explanation
Indices: 65207657--65207713 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
65207647 TGGTATAATT
65207657 TTGT-GTATACTTAGTAAAAATCA
1 TTGTGGTATACTTAGTAAAAATCA
65207680 TTGTGGTATACTTAGTAAAAATCA
1 TTGTGGTATACTTAGTAAAAATCA
65207704 TTGTGGTATA
1 TTGTGGTATA
65207714 ATGGCATGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.12
24 29 0.88
ACGTcount: A:0.35, C:0.07, G:0.18, T:0.40
Consensus pattern (24 bp):
TTGTGGTATACTTAGTAAAAATCA
Found at i:65212219 original size:42 final size:42
Alignment explanation
Indices: 65212172--65212287 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 42
65212162 TGAGATTCTG
* *
65212172 TATAAGACCATATCT-GGGATATGGCATCGGTGTG-TGATTTCA
1 TATAAGACCATAT-TAGGGATATGGCATCGATATGAT-ATTTCA
* * *
65212214 TATAAGACCATGTTAGGGACATGGCGTCGATATGATATTTCA
1 TATAAGACCATATTAGGGATATGGCATCGATATGATATTTCA
* * *
65212256 TGTAAGACCATATTCGGGATATGGCATTGATA
1 TATAAGACCATATTAGGGATATGGCATCGATA
65212288 CGGTACTAAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
41 1 0.02
42 59 0.97
43 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (42 bp):
TATAAGACCATATTAGGGATATGGCATCGATATGATATTTCA
Found at i:65214809 original size:42 final size:43
Alignment explanation
Indices: 65214702--65214861 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
65214692 ATATGTGTTA
* * * * * *
65214702 TCGTGTAAGACCACGTCTGAGACGTTGGCATTGATTTGTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
*
65214745 TACGTGTAAGACCATGTTTGGGACATTGGCATCG-TATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * * *
65214788 TCGTGTAAGACCTTGTCTGGGACAGTGGCATTGATATTTGATC
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
* * * * *
65214831 ACATATAAGACCACGTCTGGGACTTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
65214862 TGTACAAGCT
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 28 0.29
43 40 0.42
44 27 0.28
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGATATATGATT
Found at i:65216808 original size:49 final size:49
Alignment explanation
Indices: 65216681--65217085 Score: 658
Period size: 49 Copynumber: 8.3 Consensus size: 49
65216671 CCCTTCGGGA
* * * * * *
65216681 CTTATCACAT-T-TATACACTTCCACATCCATCACTTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
65216728 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65216775 CTTATCACATATATATACACCTT-ATCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCA-CATTCATCACATCGGCCATTAGGC
65216824 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65216873 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65216922 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65216971 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
65217020 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65217069 CTTATCACATATATATA
1 CTTATCACATATATATA
65217086 TATCATACAT
Statistics
Matches: 338, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 45 0.13
48 1 0.00
49 290 0.86
50 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:65219238 original size:27 final size:27
Alignment explanation
Indices: 65219208--65219266 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
65219198 TTAACACCCT
65219208 AGGGGAAAAAT-GGTAATTCTACCCTAC
1 AGGGG-AAAATCGGTAATTCTACCCTAC
* ** *
65219235 AGGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGAAAATCGGTAATTCTACCCTAC
65219262 AGGGG
1 AGGGG
65219267 TATTTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGGAAAATCGGTAATTCTACCCTAC
Found at i:65219267 original size:27 final size:28
Alignment explanation
Indices: 65219234--65219416 Score: 216
Period size: 27 Copynumber: 6.8 Consensus size: 28
65219224 TTCTACCCTA
* **
65219234 CAGGGGTATTTCGGTAATTTTACCCTA-
1 CAGGGGTATTTTGGTAATTTTACCAAAC
* *
65219261 CAGGGGTATTTTAGTAATTTT-GCAAAC
1 CAGGGGTATTTTGGTAATTTTACCAAAC
*
65219288 CATGGGTATTTTGGTAATTTTA-CAAAC
1 CAGGGGTATTTTGGTAATTTTACCAAAC
*
65219315 CAGGGGTATTTTGGTAATTTT-TCAAAC
1 CAGGGGTATTTTGGTAATTTTACCAAAC
* *
65219342 CAGGGATATTTTGGTAATTTT-GCAAAC
1 CAGGGGTATTTTGGTAATTTTACCAAAC
* * *
65219369 CAGGGGTATTTTGCTAGTTTTA-CAACC
1 CAGGGGTATTTTGGTAATTTTACCAAAC
65219396 CAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
65219417 GTAAATCGAG
Statistics
Matches: 136, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.01
27 134 0.99
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (28 bp):
CAGGGGTATTTTGGTAATTTTACCAAAC
Found at i:65219353 original size:81 final size:81
Alignment explanation
Indices: 65219234--65219416 Score: 260
Period size: 81 Copynumber: 2.3 Consensus size: 81
65219224 TTCTACCCTA
* ** * *
65219234 CAGGGGTATTTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTGCAAACCATGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACCAAACAGGGATATTTTAGTAATTTTGCAAACCAGGGGTATTT
*
65219299 TGGTAATTTTACAAAC
66 TGCTAATTTTACAAAC
* *
65219315 CAGGGGTATTTTGGTAATTTT-TCAAACCAGGGATATTTTGGTAATTTTGCAAACCAGGGGTATT
1 CAGGGGTATTTTGGTAATTTTACCAAA-CAGGGATATTTTAGTAATTTTGCAAACCAGGGGTATT
* *
65219379 TTGCTAGTTTTACAACC
65 TTGCTAATTTTACAAAC
65219396 CAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
65219417 GTAAATCGAG
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.02
81 89 0.98
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.39
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACCAAACAGGGATATTTTAGTAATTTTGCAAACCAGGGGTATTT
TGCTAATTTTACAAAC
Found at i:65219429 original size:27 final size:27
Alignment explanation
Indices: 65219407--65219640 Score: 274
Period size: 27 Copynumber: 8.7 Consensus size: 27
65219397 AGGGGTATTT
65219407 TGGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * * *
65219434 CGGTAATTCTATAAATTGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
65219461 TAGTAATTTTGTAAA-CTGAGGGTAAAA
1 TGGTAATTTTGTAAATC-GAGGGTAAAA
* *
65219488 TGGTAATTCTGTAAATTGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
65219515 TGGTAATTCTGTAAA-CTGAGGGTAAAA
1 TGGTAATTTTGTAAATC-GAGGGTAAAA
* *
65219542 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* **
65219569 CGGTAATTTTAAAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
* * * *
65219596 CGATAATTCTGTAAATCAAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAA
*
65219623 TGGTAATTCTGTAAATCG
1 TGGTAATTTTGTAAATCG
65219641 GAAGTACTTT
Statistics
Matches: 178, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
27 177 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (27 bp):
TGGTAATTTTGTAAATCGAGGGTAAAA
Found at i:65219439 original size:81 final size:81
Alignment explanation
Indices: 65219274--65219441 Score: 223
Period size: 81 Copynumber: 2.1 Consensus size: 81
65219264 GGGTATTTTA
* *
65219274 GTAATTTTGCAAACCATGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTTCA
1 GTAATTTTGCAAACCAGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTTTCA
****
65219339 AACCAGGGATATTTTG
66 AACCAGGGATAAAACG
* *
65219355 GTAATTTTGCAAACCAGGGGTATTTTGCTAGTTTTACAACCCAGGGGTATTTTGGTAATTTTGT-
1 GTAATTTTGCAAACCAGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTT-TC
*
65219419 AAATCGAGGG-TAAAACG
65 AAA-CCAGGGATAAAACG
65219436 GTAATT
1 GTAATT
65219442 CTATAAATTG
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
81 70 0.92
82 6 0.08
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.38
Consensus pattern (81 bp):
GTAATTTTGCAAACCAGGGGTATTTTGCTAATTTTACAAACCAGGGGTATTTTGGTAATTTTTCA
AACCAGGGATAAAACG
Found at i:65219457 original size:54 final size:54
Alignment explanation
Indices: 65219407--65219640 Score: 328
Period size: 54 Copynumber: 4.3 Consensus size: 54
65219397 AGGGGTATTT
* *
65219407 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* * *
65219461 TAGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAA
1 TGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
*
65219515 TGGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTTTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
* ** * *
65219569 CGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAA
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
*
65219623 TGGTAATTCTGTAAATCG
1 TGGTAATTTTGTAAATCG
65219641 GAAGTACTTT
Statistics
Matches: 161, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 159 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (54 bp):
TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
Found at i:65219484 original size:81 final size:81
Alignment explanation
Indices: 65219407--65219637 Score: 320
Period size: 81 Copynumber: 2.9 Consensus size: 81
65219397 AGGGGTATTT
* * *
65219407 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATAGTAATTTTG
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTG
65219472 TAAACTGAGGGTAAAA
66 TAAACTGAGGGTAAAA
* * * * *
65219488 TGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTG
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTG
65219553 TAAA-TCGAGGGTAAAA
66 TAAACT-GAGGGTAAAA
* ** * **
65219569 CGGTAATTTTAAAAATCGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAATGGTAATTCTG
1 TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTG
65219634 TAAA
66 TAAA
65219638 TCGGAAGTAC
Statistics
Matches: 130, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
80 1 0.01
81 129 0.99
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.30
Consensus pattern (81 bp):
TGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTG
TAAACTGAGGGTAAAA
Found at i:65224027 original size:46 final size:46
Alignment explanation
Indices: 65223960--65224052 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
65223950 TATGGTTGGG
65223960 GATTACCTGCATAGATGAAAATAGGGGATGAGTTTGGGGAAACTCA
1 GATTACCTGCATAGATGAAAATAGGGGATGAGTTTGGGGAAACTCA
*
65224006 GATTACCTGCATGGATGAAAATAGGGGATGAGTTTGGGGAAACTCA
1 GATTACCTGCATAGATGAAAATAGGGGATGAGTTTGGGGAAACTCA
65224052 G
1 G
65224053 TGTGTAAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.33, C:0.11, G:0.32, T:0.24
Consensus pattern (46 bp):
GATTACCTGCATAGATGAAAATAGGGGATGAGTTTGGGGAAACTCA
Found at i:65224339 original size:27 final size:27
Alignment explanation
Indices: 65224308--65224368 Score: 70
Period size: 28 Copynumber: 2.3 Consensus size: 27
65224298 CTGCCAGAAT
**
65224308 AGATAAT-GTGACAGAGTTACCAGATAC
1 AGATAATCGTGACAGAGCCACCAGAT-C
* *
65224335 AGATAATCGTGGCAGAGCCACCAGATT
1 AGATAATCGTGACAGAGCCACCAGATC
65224362 AGATAAT
1 AGATAAT
65224369 TTGTGGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 14 0.48
28 15 0.52
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (27 bp):
AGATAATCGTGACAGAGCCACCAGATC
Found at i:65224357 original size:28 final size:26
Alignment explanation
Indices: 65224308--65224386 Score: 68
Period size: 28 Copynumber: 2.9 Consensus size: 26
65224298 CTGCCAGAAT
* **
65224308 AGATAATGTGACAGAGTTACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGAT-C
*
65224335 AGATAATCGTGGCAGAGCCACCAGATT
1 AGATAAT-GTGGCAGAGCCACCAGATC
* *
65224362 AGATAATTTGTGGTATAGCCACCAG
1 AGATAA--TGTGGCAGAGCCACCAG
65224387 GACGCTTCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 13 0.30
28 29 0.67
29 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (26 bp):
AGATAATGTGGCAGAGCCACCAGATC
Found at i:65232148 original size:28 final size:26
Alignment explanation
Indices: 65232093--65232205 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
65232083 AGCATGGCTG
* *
65232093 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
65232119 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
65232147 CCAGAACAGATATATGTGGCAGACCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
65232174 CCAGATCAGATAATTTGTGGCATAGCTA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
65232202 CCAG
1 CCAG
65232206 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 6 0.08
27 38 0.51
28 31 0.41
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:65232178 original size:55 final size:54
Alignment explanation
Indices: 65232093--65232205 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
65232083 AGCATGGCTG
**
65232093 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGACCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
65232147 CCAGAACAGATATATGTGGCAGACCCACCAGATCAGATAATTTGTGGCATAGCTA
1 CCAGAACAGATA-ATGTGACAGACCCACCAGATCAGATAATTCGTGGCAGAGCCA
65232202 CCAG
1 CCAG
65232206 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGACCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:65234302 original size:2 final size:2
Alignment explanation
Indices: 65234295--65234329 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
65234285 ATATGTTTAG
*
65234295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65234330 GCCAAGTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:65238220 original size:762 final size:757
Alignment explanation
Indices: 65236718--65239327 Score: 3490
Period size: 763 Copynumber: 3.5 Consensus size: 757
65236708 GGATGTTACA
* * * *
65236718 CGTGTCTTGTGGCTGTGTGGATAAGTGAGTATGTATGCCCTGTTTTGCCACGGCCTAGACACACG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
* * * *
65236783 GGCGTGTCTAATGCCGTGTGAGGCACA-AGGTCTGCTCACACGGGCATGTGATATTTGTAGCTTA
66 GGAGTGTCTAATGCCGTGTGAGGCACACA-GTCTGCTCACACGGGCGTGTGATCTTTGTAACTTA
*
65236847 GAAAAATTGTTAAGTTTC-GAAAAAATTTTGTTTGTGTTCGGTTTAGTCCCGACCTCTTCCTAAT
130 GAAAAATTGTTAAGTTTCAGAAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAAT
* * **
65236911 GCATGTTTATGGTCTCATTGACCTAAGGAAGGGACTTAATGTAAATGTTTGACTATGATATGATG
195 GCATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACA
* * *
65236976 ATACATGACTATTGATTTTGAAATGATTACGAAATGTTTCGATATGTCCGTTAATGCCTCTTAAC
260 ATACATGACTATTGATTGTGAAATGATTGCGAAATGTTTCGATATGTCCGGTAATGCCTCTTAAC
*
65237041 CCTAGTCCGACGATGGATA-----T---GG--------GTATCTGGCCAAGTGAAATGGTCATTT
325 CCTAGT-CTACGATGGATACGGGTTAGGGGTAATATATGTATCTGGCCAAGTGAAATGGTCATTT
**
65237090 TGGTATGTCCATAGTTTA-GAATTTGGTAATGTTTATAATGTGATTTTAATATGCTTTGATATAG
389 TGGTATGTCCATAG-TTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATAG
*
65237154 AGAATGAGCACGAAATTTC-TTGATGATATTATGAATTGATTGATACATGTTT-GAGGTTGAATT
453 AGAATGAGCATGAAA-TTCGTTGATGATATTATGAATTGATTGATACATGTTTGGA-GTTGAATT
*
65237217 TGGCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGATCCAAATGGGTGGC
516 TGGCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGC
* * * * * *
65237282 ATATTGTCCTTTTAAATGGCCTATTTTTGACCACACAGGCAAGGACACAGGCGTATGTCTCTGTC
581 ATATTGGCCTTGTAAATGGCCTATTTTTGCCCACAC-GGGAAGGACACGGGCGTGTGTCTCTGTC
* * *
65237347 GTGTTGCCCGAGGGCCATCTCGAAATGA-CTCTTGGTAGACCACACAGT-CGAACACGCACTAGC
645 GTGTTGCTCGAGGGCCATTTCGAAATGAGCT-TGGGTAGACCACAC-GTGCGAACA--CAC-AGC
* * *
65237410 GTGTGCCAGGCTGTGTGGCCAAGTAAGTTTTGACCACGGGCTAGACACACGGG
705 GTGTGCCAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * * *
65237463 TGTGTCTTGTGGCCATGTGGATAGGTTAGTATGTATGCCCTGTTTCGCCACGGCCTAGACACACG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
*
65237528 GGAGTGTCTAATGCCGTGTGAGGCACACAGTCTGCTCACACGGGCGTGTGATCTTTGTAGCTTAG
66 GGAGTGTCTAATGCCGTGTGAGGCACACAGTCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
* * * ** *
65237593 AAAAATGGTTAAGTTTCAG-AAAAATTTTGTCTGTGTTCTGTTTAGTCCTAACCTCTTCCTAATA
131 AAAAATTGTTAAGTTTCAGAAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
*
65237657 CATGTTTATGGTCTCATTGACCTAAGAAATGGACTTAATGTTAAAT-TTTGACTATGATATGACA
196 CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTT-AATGTTTGACTATGATATGACA
* *
65237721 ATACATGACTATTGATTGTGAAATGATTGCGAAATG-TTCTGATATGCCCTGTAATGCCTCTTAA
260 ATACATGACTATTGATTGTGAAATGATTGCGAAATGTTTC-GATATGTCCGGTAATGCCTCTTAA
*
65237785 CCCTAGTCTGATGATGGATACGGGTTAGGGGTACATATATGTATCTGGCCAAGTGAAATGGTCAT
324 CCCTAGTCT-ACGATGGATACGGGTTAGGGGTA-ATATATGTATCTGGCCAAGTGAAATGGTCAT
* * *
65237850 TTTGGTATGTCCATAGTTGGGAATTTGGTAATGTTTAGCATTTGATTTTAATATACTTTGATATA
387 TTTGGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATA
*
65237915 GAGAATGAGCATGAAATTGGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAATTT
452 GAGAATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAATTT
*
65237980 GGCTGAAAATGTCT-CATATATGATGCTTGGTTTTGGAATTGTAGGGAGGACCCAAATGGGTGGC
517 GGCTGAAAATGT-TGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGC
* * * * * * *
65238044 ATATTGGCCTAGTAAATAGCCTATTTTTGCCCGCACGGGTAGCGGCACGGGCATGTGTCTCGGTC
581 ATATTGGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAG-GACACGGGCGTGTGTCTCTGTC
* *
65238109 GTGTTGCTCGAGGGCCATTTTGTAATGAGCTTGGGTAGACCACACGGTTGCGAACACACAAGCGT
645 GTGTTGCTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACAC-G-TGCGAACACAC-AGCGT
* * * *
65238174 GTGCCAGGCTCTTTGGCAAAGTCAGTTTCGACCACGGGCTAGACACACTGG
707 GTGCCAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * *
65238225 CGTGTCTTGTGGGCCGTGTGGATAAGTTAGTATGCATGCCCTATTTCGCCACAGCCTAGACACAT
1 CGTGTCTTGT-GGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACAC
* * * * *
65238290 GGGCGTGTCCAATGCCGTGTAAGGCACAC-GATTTGGC-CACATGGGCGTGTGATCTTTGTAACT
65 GGGAGTGTCTAATGCCGTGTGAGGCACACAG-TCT-GCTCACACGGGCGTGTGATCTTTGTAACT
*
65238353 TAGAAAAATTGTTATGTTTCA-AAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTA
128 TAGAAAAATTGTTAAGTTTCAGAAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTA
* * *
65238417 ATGCATGTTTATGGTCTCATTGACCTAAGGAAGGGACTTAATATTGATGTTTGACTATGATATGA
193 ATGCATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGA
** * * *
65238482 CAATGGATGACT-TTCGATTGTGAAATGATTGCAAAATGTTCCAATATGTCCGGTAATGCCTCTT
258 CAATACATGACTATT-GATTGTGAAATGATTGCGAAATGTTTCGATATGTCCGGTAATGCCTCTT
* *
65238546 TACCCTAGTCTAGCGATGGATACGGGTTAGGGGTATATATATGTATATGGCCAAGTGAAATGGTC
322 AACCCTAGTCTA-CGATGGATACGGGTTAGGGGTA-ATATATGTATCTGGCCAAGTGAAATGGTC
* * * *
65238611 AGTTTAGTATGTTCATAGCTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATA
385 ATTTTGGTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATA
** * * *
65238676 TATTGATTGAGCATGAAATTCGTTGGTGATATTATGAATTGATTGATACATGTTTGGAGTTGAGT
450 TAGAGAATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAAT
* * *
65238741 TTGGCTGAAAATGTTGCATATATGATGCCTGATTTTGGAGTTGCAGGGAGGACCCAAATGGGTGG
515 TTGGCTGAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGG
* * * * *
65238806 CATATTGGCCTTGTAAATGGTCTATTTTTACCCACACAGGCAGTGACATGGGCGTGTGTCTCTGT
580 CATATTGGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAG-GACACGGGCGTGTGTCTCTGT
* * * *
65238871 CGTGTTGCTCGAGGGCCATTTCGGAATGAGCCTGGGCAGACTACAC--G-G--------GCGTGT
644 CGTGTTGCTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACACGTGCGAACACACAGCGTGT
* * *
65238925 GCCAGGCTATGTGGCCAAGTCAGTTCCAACCACGGGCTAGACACACGAG
709 GCCAGGCTATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
* * * *
65238974 CGTGTGTTGTGGCCGTGTGGATAAGTTAGTATGTATTCCCTATTTCACCACGGCCTAGACACATG
1 CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
* * * * *
65239039 GGAGTGTCTAATGTCGTGTGAGGGACACGGTCTGCTCACATGGGCGTGTGAACTTTGTAACTTAG
66 GGAGTGTCTAATGCCGTGTGAGGCACACAGTCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
*
65239104 AAAAATTGTTAAGTTTCAGAAAAAAATTT-TATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
131 AAAAATTGTTAAGTTTCAGAAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
* * * **
65239168 CAAGTTTATGGTCTCATTGACCTAAGAAAGGGTCTTAATGTTAATGTTTGACTATGATAAGATGA
196 CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAA
* * * *
65239233 TGCATGACTTTTGATTGTGAAATGGTTGCGAAATGTTTCGATATGTCCGGTAATGCTTCTTAACC
261 TACATGACTATTGATTGTGAAATGATTGCGAAATGTTTCGATATGTCCGGTAATGCCTCTTAACC
*
65239298 TTAGTAC-ATCGATGGATACGGGTTAGGGGT
326 CTAGT-CTA-CGATGGATACGGGTTAGGGGT
65239328 GTTACATTTG
Statistics
Matches: 1652, Mismatches: 169, Indels: 85
0.87 0.09 0.04
Matches are distributed among these distances:
744 4 0.00
745 301 0.18
746 5 0.00
747 2 0.00
748 294 0.18
749 70 0.04
750 1 0.00
753 2 0.00
758 1 0.00
759 1 0.00
761 8 0.00
762 353 0.21
763 600 0.36
764 10 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (757 bp):
CGTGTCTTGTGGCCGTGTGGATAAGTTAGTATGTATGCCCTATTTCGCCACGGCCTAGACACACG
GGAGTGTCTAATGCCGTGTGAGGCACACAGTCTGCTCACACGGGCGTGTGATCTTTGTAACTTAG
AAAAATTGTTAAGTTTCAGAAAAAATTTTGTATGTGTTCGGTTTAGTCCCGACCTCTTCCTAATG
CATGTTTATGGTCTCATTGACCTAAGAAAGGGACTTAATGTTAATGTTTGACTATGATATGACAA
TACATGACTATTGATTGTGAAATGATTGCGAAATGTTTCGATATGTCCGGTAATGCCTCTTAACC
CTAGTCTACGATGGATACGGGTTAGGGGTAATATATGTATCTGGCCAAGTGAAATGGTCATTTTG
GTATGTCCATAGTTAGGAATTTGGTAATGTTTAGCATGTGATTTTAATATGCTTTGATATAGAGA
ATGAGCATGAAATTCGTTGATGATATTATGAATTGATTGATACATGTTTGGAGTTGAATTTGGCT
GAAAATGTTGCATATATGATGCTTGATTTTGGAATTGTAGGGAGGACCCAAATGGGTGGCATATT
GGCCTTGTAAATGGCCTATTTTTGCCCACACGGGAAGGACACGGGCGTGTGTCTCTGTCGTGTTG
CTCGAGGGCCATTTCGAAATGAGCTTGGGTAGACCACACGTGCGAACACACAGCGTGTGCCAGGC
TATGTGGCCAAGTCAGTTTCGACCACGGGCTAGACACACGGG
Found at i:65250194 original size:94 final size:94
Alignment explanation
Indices: 65250033--65250214 Score: 346
Period size: 94 Copynumber: 1.9 Consensus size: 94
65250023 GGAATTATGG
65250033 ATGTTCGAGTTTAGAAGTGTTTATAAAGAAGTTCATATAATCTTATGTATGATTTGTAATAAATG
1 ATGTTCGAGTTTAGAAGTGTTTATAAAGAAGTTCATATAATCTTATGTATGATTTGTAATAAATG
65250098 AACATAGTTTGATTGGCGATGTAATGAAT
66 AACATAGTTTGATTGGCGATGTAATGAAT
* *
65250127 ATGTTTGAGTTTAGAAGTGTTTATAAAGAAGTTCATATAATCTTATGTATGATTTGTAATTAATG
1 ATGTTCGAGTTTAGAAGTGTTTATAAAGAAGTTCATATAATCTTATGTATGATTTGTAATAAATG
65250192 AACATAGTTTGATTGGCGATGTA
66 AACATAGTTTGATTGGCGATGTA
65250215 TTCGAATTTG
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (94 bp):
ATGTTCGAGTTTAGAAGTGTTTATAAAGAAGTTCATATAATCTTATGTATGATTTGTAATAAATG
AACATAGTTTGATTGGCGATGTAATGAAT
Found at i:65257243 original size:34 final size:34
Alignment explanation
Indices: 65257200--65257272 Score: 146
Period size: 34 Copynumber: 2.1 Consensus size: 34
65257190 CTCATAGTAA
65257200 AGAATTCAGATAATACTGTCATCTATCTTTCTAG
1 AGAATTCAGATAATACTGTCATCTATCTTTCTAG
65257234 AGAATTCAGATAATACTGTCATCTATCTTTCTAG
1 AGAATTCAGATAATACTGTCATCTATCTTTCTAG
65257268 AGAAT
1 AGAAT
65257273 AGACTCATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (34 bp):
AGAATTCAGATAATACTGTCATCTATCTTTCTAG
Found at i:65260910 original size:28 final size:28
Alignment explanation
Indices: 65260843--65260914 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
65260833 ATAGTGAATC
* * *
65260843 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAACT
65260872 CGCACACTTAGTGCTATAGA-ATCAAACT
1 CGCACACTTAGTGCTATAGATATC-AACT
65260900 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65260915 GTACAATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAACT
Found at i:65267134 original size:28 final size:28
Alignment explanation
Indices: 65267067--65267138 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
65267057 ATAGTGAATC
* * *
65267067 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAACT
65267096 CGCACACTTAGTGCTATAGA-ATCAAACT
1 CGCACACTTAGTGCTATAGATATC-AACT
65267124 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65267139 GTACAATTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAACT
Found at i:65269403 original size:27 final size:27
Alignment explanation
Indices: 65269364--65269443 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 27
65269354 TTAGAATACT
*
65269364 TTAGTTTACTAAAATTA-TCGAAATACCC
1 TTAGTTT-GTAAAATTACT-GAAATACCC
*
65269392 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
65269419 -TCGATTTGTAAAATTACTGAAATAC
1 TTAG-TTTGTAAAATTACTGAAATAC
65269444 TTTCGACTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.04
27 36 0.78
28 8 0.17
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:65269449 original size:27 final size:27
Alignment explanation
Indices: 65269373--65269479 Score: 103
Period size: 27 Copynumber: 4.0 Consensus size: 27
65269363 TTTAGTTTAC
*
65269373 TAAAATTA-TCGAAATACCCT-TAGTTTG
1 TAAAATTACT-GAAATACCCTCGA-TTTG
*
65269400 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
** *
65269427 TAAAATTACTGAAATACTTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
65269454 TAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACTGAAA-TACCCTCGATTT
65269480 ACAGAATTAC
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.05
27 61 0.92
28 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:65269679 original size:27 final size:27
Alignment explanation
Indices: 65269468--65269678 Score: 271
Period size: 27 Copynumber: 7.8 Consensus size: 27
65269458 ATTACCAAAG
*
65269468 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
65269495 TACCCCCGATTTATATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
65269522 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
65269549 TACCCTCGACTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
65269576 TACCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
65269603 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
65269630 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
65269657 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
65269679 TAAAATACCC
Statistics
Matches: 162, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 160 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:65269687 original size:27 final size:27
Alignment explanation
Indices: 65269603--65269881 Score: 145
Period size: 27 Copynumber: 10.3 Consensus size: 27
65269593 ATTACCGTTT
* * * ***
65269603 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTAAAA
* ****
65269630 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
65269657 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
** * *
65269684 TACCCTT-AGTTTGTAAAAGTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
* ** *
65269711 TACCCCT-AGTTTTTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACTAAAA
* *** **
65269738 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** *
65269765 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *
65269792 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
65269819 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
65269848 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
65269875 TACCCTT
1 TACCCTT
65269882 AGTTTGTAGA
Statistics
Matches: 206, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.01
27 178 0.86
28 7 0.03
29 19 0.09
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:65269819 original size:54 final size:53
Alignment explanation
Indices: 65269671--65269909 Score: 205
Period size: 54 Copynumber: 4.4 Consensus size: 53
65269661 CTCGATTTAC
* * * * *
65269671 AAAATTACTAAAATACCCTTAGTTTGTA-AAAGTACCA-AAATACCCCTAGTTTTT
1 AAAATTACCAAAATACCCTT-GGTT-TACAAATTA-CAGAAATACCCTTAGTTTGT
** * *
65269725 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTT-ACAAATTACAGAAATACCCTTAGTTTGT
* * * *
65269779 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTGGTTTACAAA-TTACAGAAATACCCTT-AGTTTGT
* * *
65269834 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTAGTTTGT
1 -AAAATTACCA-AAATACCCTTGGTTTAC-AAATTACAGAAATACCCTTAGTTTGT
* * *
65269889 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
65269910 TAGGATGAAA
Statistics
Matches: 149, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 7 0.05
54 90 0.60
55 12 0.08
56 36 0.24
57 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTTGGTTTACAAATTACAGAAATACCCTTAGTTTGT
Found at i:65269820 original size:81 final size:81
Alignment explanation
Indices: 65269672--65269826 Score: 217
Period size: 81 Copynumber: 1.9 Consensus size: 81
65269662 TCGATTTACA
* * *
65269672 AAATTACTAAAATACCCTTAGTTTGTAAAAGTACCAAAATACCCCTAGTTTTTAAAATTACCAAA
1 AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTAAAATTACCAAA
65269737 ATACCCTTGGTTTGTG
66 ATACCCTTGGTTTGTG
* *
65269753 AAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCT-G-ATTTACAAAGTTA-CA
1 AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTA-AAA-TTACCA
65269815 GAAATACCCTTG
64 -AAATACCCTTG
65269827 ACTTTCTAAA
Statistics
Matches: 66, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
79 4 0.06
80 6 0.09
81 56 0.85
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAATTTGTAAAAGTACCAAAATACCCCTAGTATTTAAAATTACCAAA
ATACCCTTGGTTTGTG
Found at i:65269886 original size:27 final size:27
Alignment explanation
Indices: 65269666--65269886 Score: 153
Period size: 27 Copynumber: 8.1 Consensus size: 27
65269656 TTACCCTCGA
*
65269666 TTTACAAAATTACTAAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCTTAG
** * *
65269693 TTTGTAAAAGTACCAAAATACCCCTAG
1 TTTACAAAATTACCAAAATACCCTTAG
** *
65269720 TTTTTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAATACCCTTAG
*** * *
65269747 TTTGTGAAATTACCGAAATACCCTTAA
1 TTTACAAAATTACCAAAATACCCTTAG
** *
65269774 TTTGTAAAATTACCAAAATACCCCT-G
1 TTTACAAAATTACCAAAATACCCTTAG
* *
65269800 ATTTACAAAGTTA-CAGAAATACCCTTGAC
1 -TTTACAAAATTACCA-AAATACCCTT-AG
* * *
65269829 TTT-CTAAAAATTA-TAGAAATACCATTGG
1 TTTAC--AAAATTACCA-AAATACCCTTAG
**
65269857 TTTACAAAATTACTGAAATACCCTTAG
1 TTTACAAAATTACCAAAATACCCTTAG
65269884 TTT
1 TTT
65269887 GTAGATTTAC
Statistics
Matches: 155, Mismatches: 31, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 2 0.01
27 128 0.83
28 7 0.05
29 18 0.12
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCTTAG
Found at i:65270004 original size:27 final size:27
Alignment explanation
Indices: 65269917--65270004 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
65269907 TTGTAGGATG
* * *
65269917 AAATGACTAAAATACCCCTAT-TAGGTA
1 AAATGACCATAATACCCCTGTAT-GGTA
* * *
65269944 AAAAGACCGTAA-AGCCCCTGTAGGGTA
1 AAATGACCATAATA-CCCCTGTATGGTA
*
65269971 AAGTGACCATAATACCCCTGTATGGTA
1 AAATGACCATAATACCCCTGTATGGTA
65269998 AAATGAC
1 AAATGAC
65270005 GAATATGCCC
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
26 1 0.02
27 45 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (27 bp):
AAATGACCATAATACCCCTGTATGGTA
Found at i:65271259 original size:9 final size:9
Alignment explanation
Indices: 65271247--65271303 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
65271237 TTTGATAAAC
65271247 ATGATATGT
1 ATGATATGT
*
65271256 ATGATATGCAC
1 ATGATATG--T
*
65271267 ATGACATGT
1 ATGATATGT
*
65271276 ATGATATGCAC
1 ATGATATG--T
65271287 ATGATATGT
1 ATGATATGT
65271296 ATGATATG
1 ATGATATG
65271304 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:65271270 original size:20 final size:20
Alignment explanation
Indices: 65271245--65271307 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
65271235 ATTTTGATAA
65271245 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
65271265 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
65271285 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
65271305 ACA
1 ACA
65271308 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:65271393 original size:23 final size:23
Alignment explanation
Indices: 65271363--65271505 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
65271353 AGGAAGTGAA
65271363 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
65271386 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
65271410 AAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTATT
* *
65271433 AAAAGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
65271456 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
65271480 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
65271503 AAA
1 AAA
65271506 AGAGGCTAGG
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
23 65 0.60
24 43 0.40
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:65271431 original size:47 final size:46
Alignment explanation
Indices: 65271362--65271527 Score: 219
Period size: 47 Copynumber: 3.5 Consensus size: 46
65271352 GAGGAAGTGA
*
65271362 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
*
65271408 CAAAAGGGCTTATGCCCCAGTTATCAAAA-GGCTTACGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
* *
65271455 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-T
*
65271503 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
65271528 TGATAAAGCA
Statistics
Matches: 106, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
46 26 0.25
47 55 0.52
48 14 0.13
49 11 0.10
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (46 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:65271483 original size:70 final size:70
Alignment explanation
Indices: 65271362--65271507 Score: 247
Period size: 70 Copynumber: 2.1 Consensus size: 70
65271352 GAGGAAGTGA
* *
65271362 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAA-GGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
65271427 GTTATC
65 GTTATC
*
65271433 AAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAG
1 AAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
*
65271498 TTATT
66 TTATC
65271503 AAAAG
1 AAAAG
65271508 AGGCTAGGCC
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
70 67 0.94
71 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (70 bp):
AAAAGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAG
TTATC
Found at i:65271755 original size:31 final size:32
Alignment explanation
Indices: 65271720--65271800 Score: 103
Period size: 31 Copynumber: 2.6 Consensus size: 32
65271710 CGTTTACCGT
*
65271720 AAAGGCTTCGGCCCAGTAATATGAAATTTGA-
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAG
**
65271751 AAAGGCTTCGGCCCAGTGTTATGAAATATGAG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGAG
*
65271783 AAGGGCTAT-GGCCCAGTA
1 AAAGGCT-TCGGCCCAGTA
65271801 CATGTTTGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 28 0.65
32 14 0.33
33 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.23
Consensus pattern (32 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGAG
Found at i:65276711 original size:46 final size:46
Alignment explanation
Indices: 65276661--65276829 Score: 166
Period size: 46 Copynumber: 3.7 Consensus size: 46
65276651 TGAGCATCCA
* *
65276661 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * * *
65276707 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCCG
* * *
65276754 AACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCAAACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC-G
* *
65276800 AGCTCGTTGAGTTGAGCCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
65276830 GGGGCGGGTT
Statistics
Matches: 100, Mismatches: 15, Indels: 16
0.76 0.11 0.12
Matches are distributed among these distances:
43 5 0.05
45 6 0.06
46 51 0.51
47 28 0.28
48 4 0.04
50 6 0.06
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
Found at i:65276813 original size:93 final size:93
Alignment explanation
Indices: 65276654--65276824 Score: 254
Period size: 93 Copynumber: 1.8 Consensus size: 93
65276644 GGATGGTTGA
* * *
65276654 GCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
*
65276719 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGCCCGAGTTCGTGAGATGTAACTAG
* * * *
65276747 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATTTATGGATGCAAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCC-GAACTCGTTGAG
65276811 TTGAGCCCGAGTTC
65 TTGAGCCCGAGTTC
65276825 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 67 0.97
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAGATGTAACTAG
Found at i:65277091 original size:19 final size:20
Alignment explanation
Indices: 65277054--65277091 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65277044 ATAAGGTGGT
65277054 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
65277074 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
65277092 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:65284256 original size:46 final size:46
Alignment explanation
Indices: 65284206--65284377 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
65284196 TGGTTGAGCA
65284206 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65284252 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
65284297 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
65284345 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
65284378 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 34 0.31
46 29 0.27
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65284636 original size:19 final size:20
Alignment explanation
Indices: 65284599--65284636 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
65284589 ATAAGGTGGT
65284599 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
65284619 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
65284637 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:65290291 original size:17 final size:18
Alignment explanation
Indices: 65290249--65290297 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65290239 AGTTGAAAAG
65290249 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65290268 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65290285 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65290298 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65291187 original size:40 final size:40
Alignment explanation
Indices: 65291121--65291287 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65291111 AAATTGAATG
* * *
65291121 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
65291160 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
65291200 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65291240 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65291280 ATATCCGG
1 ATATCCGG
65291288 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65298296 original size:17 final size:18
Alignment explanation
Indices: 65298254--65298302 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
65298244 AGTTGAAAAG
65298254 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
65298273 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
65298290 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
65298303 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:65299190 original size:40 final size:39
Alignment explanation
Indices: 65299124--65299289 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 39
65299114 AAATTGAATG
* * *
65299124 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGG-TATT
* * **
65299163 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
*
65299202 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-G-TATT
* * **
65299242 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGT-ATT
65299282 ATATCCGG
1 ATATCCGG
65299290 TTATATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
38 3 0.03
39 42 0.41
40 56 0.54
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTATT
Found at i:65303791 original size:46 final size:45
Alignment explanation
Indices: 65303741--65303916 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
65303731 TGTTTGGGCA
65303741 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
65303787 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
65303834 TCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATACGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
65303880 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65303917 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65303896 original size:93 final size:93
Alignment explanation
Indices: 65303737--65303908 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
65303727 AGGATGTTTG
* * * *
65303737 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
65303802 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
*
65303830 GGCATCC-AAGCTCGTTGAGTTGAGTCAGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGA
1 GGCATCCGAA-CTCGTTGAGTTGAGTCAGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGA
65303894 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
65303909 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCAGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65309004 original size:40 final size:40
Alignment explanation
Indices: 65308945--65309152 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
65308935 CAATTGAATG
* * * *
65308945 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
65308985 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
65309025 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
65309065 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
65309105 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
65309145 ATATCCGG
1 ATATCCGG
65309153 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:65309083 original size:80 final size:80
Alignment explanation
Indices: 65308947--65309152 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
65308937 ATTGAATGAT
* * ** * * *
65308947 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
65309011 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
65309027 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
65309092 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
65309107 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
65309153 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:65315930 original size:29 final size:29
Alignment explanation
Indices: 65315897--65316086 Score: 256
Period size: 29 Copynumber: 6.6 Consensus size: 29
65315887 GTGACGAGAT
65315897 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
65315926 TGGCACTAAGTGTGCGCGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
65315955 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
65315984 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
65316013 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
65316042 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
65316071 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
65316087 AAATCGAGTA
Statistics
Matches: 144, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
28 2 0.01
29 142 0.99
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:65320373 original size:40 final size:40
Alignment explanation
Indices: 65320314--65320521 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
65320304 CAATTGAATG
* * * *
65320314 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
65320354 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
65320394 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
65320434 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
65320474 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
65320514 ATATCCGG
1 ATATCCGG
65320522 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:65320452 original size:80 final size:80
Alignment explanation
Indices: 65320316--65320521 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
65320306 ATTGAATGAT
* * ** * * *
65320316 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
65320380 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
65320396 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
65320461 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
65320476 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
65320522 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:65324928 original size:28 final size:27
Alignment explanation
Indices: 65324865--65324934 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
65324855 ATAGTGAGTC
65324865 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
65324892 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
65324920 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
65324935 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:65328700 original size:47 final size:47
Alignment explanation
Indices: 65328637--65329260 Score: 1005
Period size: 47 Copynumber: 13.3 Consensus size: 47
65328627 CCCTTCGGGA
* * *
65328637 CTTATCACATTTATACACTTTCACATCCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
65328684 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65328731 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65328778 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65328825 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65328872 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65328919 CTTATCACATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * ** * *
65328966 CTTATCACATATATACACCTTCACATCCATCACATCAGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65329013 CTTATCTCATATATACACTTTCACATTCATCACATTGACCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65329060 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65329107 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65329154 CTTATCACATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65329201 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65329248 CTTATCACATATA
1 CTTATCACATATA
65329261 CATATCTTGT
Statistics
Matches: 529, Mismatches: 48, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 529 1.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65338965 original size:24 final size:24
Alignment explanation
Indices: 65338935--65338981 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
65338925 ATGTATCGGC
* *
65338935 AAAAGCTGAAATGCCAAAAAGCCA
1 AAAAGCTAAAATACCAAAAAGCCA
*
65338959 AAAAGCTAAAATACCGAAAAGCC
1 AAAAGCTAAAATACCAAAAAGCC
65338982 GAAAGTTTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.55, C:0.21, G:0.15, T:0.09
Consensus pattern (24 bp):
AAAAGCTAAAATACCAAAAAGCCA
Found at i:65341725 original size:40 final size:40
Alignment explanation
Indices: 65341560--65341727 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
65341550 AAATTGAATG
* * * **
65341560 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
65341600 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
65341640 AAATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
65341680 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
65341720 ATATCCGG
1 ATATCCGG
65341728 TTATATTCCG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
39 4 0.04
40 98 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:65346474 original size:46 final size:46
Alignment explanation
Indices: 65346407--65346540 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 46
65346397 ATATATATAC
* * *
65346407 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
65346453 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
65346499 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
65346541 CATACGCATG
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 6 0.08
46 43 0.59
47 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:65346532 original size:47 final size:47
Alignment explanation
Indices: 65346470--65346685 Score: 378
Period size: 47 Copynumber: 4.6 Consensus size: 47
65346460 ACACATTTCG
* * * **
65346470 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
65346517 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
65346564 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
65346611 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
65346658 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
65346686 TATATACAGG
Statistics
Matches: 163, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 163 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:65346573 original size:94 final size:94
Alignment explanation
Indices: 65346470--65346711 Score: 385
Period size: 94 Copynumber: 2.5 Consensus size: 94
65346460 ACACATTTCG
*
65346470 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
65346535 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACGCATGTTCACATTCATCA
* * **
65346564 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
65346629 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACGCATGTTCACATTCATCA
* *
65346658 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
65346712 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 105 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCA
Found at i:65353697 original size:40 final size:40
Alignment explanation
Indices: 65353652--65353819 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
65353642 CGGAATATAA
65353652 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
65353692 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
65353732 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
65353772 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
65353812 CCGGATAT
1 CCGGATAT
65353820 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:65361787 original size:39 final size:38
Alignment explanation
Indices: 65361736--65361841 Score: 133
Period size: 39 Copynumber: 2.7 Consensus size: 38
65361726 ATAATCACGT
* *
65361736 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TAGAATACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAG-ACACTA
*
65361775 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATTAGACACTA
*
65361814 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
65361842 TATAATTTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 55 0.92
40 3 0.05
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.24
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATTAGACACTA
Found at i:65371188 original size:55 final size:55
Alignment explanation
Indices: 65371101--65371220 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
65371091 TATGTAGGCC
* * ***
65371101 CACGCCCATGTTCATTTAACAGGTTCGCCCAC-GGTTGCTTGGCACGGGCGTGTCA
1 CACGCCCGTGTTAATTTAACAGGTTCGCCCACGGGTT-AAAGGCACGGGCGTGTCA
* * *
65371156 TACGCCCGTGTTAATTTGACAGGTTCAG-CCACGGGTTAAAGGCACGGGCGTGTCG
1 CACGCCCGTGTTAATTTAACAGGTTC-GCCCACGGGTTAAAGGCACGGGCGTGTCA
65371211 CACGCCCGTG
1 CACGCCCGTG
65371221 CTGTTTTGGC
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
55 49 0.91
56 5 0.09
ACGTcount: A:0.17, C:0.29, G:0.30, T:0.23
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTAACAGGTTCGCCCACGGGTTAAAGGCACGGGCGTGTCA
Found at i:65374612 original size:71 final size:71
Alignment explanation
Indices: 65374526--65374689 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65374516 CGATTTGTCT
65374526 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65374591 CTTTCA
66 CTTTCA
65374597 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65374662 CTTTCA
66 CTTTCA
65374668 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65374690 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65374727 original size:71 final size:70
Alignment explanation
Indices: 65374526--65374723 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
65374516 CGATTTGTCT
* * * *
65374526 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65374591 CTTTCA
65 CTTTCA
* * * *
65374597 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65374662 CTTTCA
65 CTTTCA
* *
65374668 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
65374724 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65382190 original size:71 final size:71
Alignment explanation
Indices: 65382104--65382267 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
65382094 CGATTTGTCT
65382104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65382169 CTTTCA
66 CTTTCA
65382175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
65382240 CTTTCA
66 CTTTCA
65382246 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
65382268 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:65382305 original size:71 final size:70
Alignment explanation
Indices: 65382104--65382301 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
65382094 CGATTTGTCT
* * * *
65382104 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65382169 CTTTCA
65 CTTTCA
* * * *
65382175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
65382240 CTTTCA
65 CTTTCA
* *
65382246 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
65382302 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:65387619 original size:40 final size:40
Alignment explanation
Indices: 65387560--65387701 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
65387550 AAATTGAATG
* * *
65387560 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
65387600 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
65387640 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
65387680 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
65387702 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:65387702 original size:40 final size:39
Alignment explanation
Indices: 65387599--65387727 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
65387589 TGCTGGAAAT
* * *
65387599 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
65387639 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
65387679 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
65387719 TATATCCGG
1 TATATCCGG
65387728 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:65395643 original size:40 final size:40
Alignment explanation
Indices: 65395584--65395725 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
65395574 AAATTGAATG
* * *
65395584 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
65395624 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
65395664 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
65395704 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
65395726 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:65395726 original size:40 final size:39
Alignment explanation
Indices: 65395623--65395751 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
65395613 TGCTGGAAAT
* * *
65395623 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
65395663 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
65395703 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
65395743 TATATCCGG
1 TATATCCGG
65395752 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:65402237 original size:28 final size:28
Alignment explanation
Indices: 65402190--65402282 Score: 159
Period size: 28 Copynumber: 3.3 Consensus size: 28
65402180 AAATTAACCC
* *
65402190 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
65402218 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
65402246 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
*
65402274 TAAGGGTAT
1 TAGGGGTAT
65402283 TCTAGTACAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:65412959 original size:29 final size:28
Alignment explanation
Indices: 65412892--65412963 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
65412882 AAAATTGTAC
* * *
65412892 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
65412920 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
65412949 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
65412964 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:65415608 original size:14 final size:14
Alignment explanation
Indices: 65415589--65415617 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65415579 AATGCACTTA
65415589 ATAATCTCTCATAC
1 ATAATCTCTCATAC
65415603 ATAATCTCTCATAC
1 ATAATCTCTCATAC
65415617 A
1 A
65415618 AAACCTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATCTCTCATAC
Found at i:65417232 original size:17 final size:17
Alignment explanation
Indices: 65417203--65417235 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
65417193 TTTAAAATAA
65417203 TTAAACTCAAAATGAAC
1 TTAAACTCAAAATGAAC
65417220 TTAAATCTC-AAATGAA
1 TTAAA-CTCAAAATGAA
65417236 AAAAGCATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.52, C:0.15, G:0.06, T:0.27
Consensus pattern (17 bp):
TTAAACTCAAAATGAAC
Found at i:65417836 original size:13 final size:12
Alignment explanation
Indices: 65417804--65417838 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
65417794 TATTTTTTTT
65417804 AAAATTAATATA
1 AAAATTAATATA
65417816 AAAA-TAATATAA
1 AAAATTAATAT-A
65417828 AAAATTAATAT
1 AAAATTAATAT
65417839 GGGCCGAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 6 0.29
12 9 0.43
13 6 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:65418397 original size:21 final size:19
Alignment explanation
Indices: 65418357--65418404 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
65418347 ATTCTTTTAC
65418357 TTTTTTTATTTTTTTCGCA
1 TTTTTTTATTTTTTTCGCA
* *
65418376 TTTTTCTTGTTTTTATTTGCA
1 TTTTT-TTATTTTT-TTCGCA
65418397 TTTATTTT
1 TTT-TTTT
65418405 GAAAAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.21
20 7 0.29
21 10 0.42
22 2 0.08
ACGTcount: A:0.10, C:0.08, G:0.06, T:0.75
Consensus pattern (19 bp):
TTTTTTTATTTTTTTCGCA
Found at i:65419513 original size:21 final size:21
Alignment explanation
Indices: 65419487--65419551 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
65419477 GCAGAGGCTA
*
65419487 GCCCGTGTGGCTACCCCACAC
1 GCCCGTGCGGCTACCCCACAC
65419508 GCCCGTGCGGCTACCCCACAC
1 GCCCGTGCGGCTACCCCACAC
*
65419529 GCCCGTGCGACTACCCCACAC
1 GCCCGTGCGGCTACCCCACAC
65419550 GC
1 GC
65419552 TCGCGTGCTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.15, C:0.51, G:0.23, T:0.11
Consensus pattern (21 bp):
GCCCGTGCGGCTACCCCACAC
Found at i:65420831 original size:26 final size:26
Alignment explanation
Indices: 65420771--65420932 Score: 121
Period size: 26 Copynumber: 6.2 Consensus size: 26
65420761 ATACATAGTA
* * *
65420771 CCTGATAAATATA-CACTGGCTCAAAG
1 CCTGCTAAATA-ACCACTAGCTCAAGG
* * *
65420797 CCTGTTAAATAACCACCAACTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
* * * *
65420823 TCTGCTAAACAAACACTTGCTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
* * * * *
65420849 CCTGCTAAATAAGC-GTCATCTCGATG
1 CCTGCTAAATAACCACT-AGCTCAAGG
* * **
65420875 TCTGCTAAATAACCATTAGCTTGAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
65420901 CCTGCTAAATAACCACTAGCTCAAGG
1 CCTGCTAAATAACCACTAGCTCAAGG
65420927 CCTGCT
1 CCTGCT
65420933 TTTTTAGCAT
Statistics
Matches: 103, Mismatches: 30, Indels: 6
0.74 0.22 0.04
Matches are distributed among these distances:
25 2 0.02
26 100 0.97
27 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (26 bp):
CCTGCTAAATAACCACTAGCTCAAGG
Found at i:65428697 original size:46 final size:46
Alignment explanation
Indices: 65428618--65428793 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
65428608 CATTGGGTGG
* * * * *
65428618 TATGTGAGCCAGTGTAAGACATGTCTAGAACATGCATCAGTCACGT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATGT
*
65428664 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGAATCAGCCATGT
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATGT
* * * *
65428710 TATGAGATCCAGTGTAAGACATGTATGGGACATGCATC-GGCATTGA
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCA-TGT
* * * *
65428756 GACGAGAGCTAATGTAAGACATGTCTGGGACATGCATC
1 TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATC
65428794 GGCCTTGGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
45 3 0.03
46 109 0.97
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCATGT
Found at i:65428829 original size:48 final size:46
Alignment explanation
Indices: 65428674--65428843 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
65428664 TATGAGAGCC
* * ** * * * *
65428674 AGTGTAAGACATGTCTGGGACATGAATCAGCCA-TGTTATGAGATCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATTGAGAAGAAAGCT
* * *
65428720 AGTGTAAGACATGTATGGGACATGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAGAAAGCT
* * * *
65428766 AATGTAAGACATGTCTGGGACATGCATCGGCCTTGGGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-AGA-AAGCT
* *
65428814 AGTGTAAGACCTGTCTGGGATATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
65428844 CCTCGATATA
Statistics
Matches: 102, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
45 3 0.03
46 68 0.67
47 1 0.01
48 24 0.24
49 6 0.06
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAAGAAAGCT
Found at i:65431050 original size:40 final size:40
Alignment explanation
Indices: 65430984--65431164 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
65430974 CTCAAGAAAT
* * *
65430984 CTTCGGGATTTAG-CCGGATATAGTCGCTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
65431023 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
65431063 CTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
65431103 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
65431143 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
65431165 CATTCGAATA
Statistics
Matches: 131, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 118 0.90
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:65439122 original size:40 final size:40
Alignment explanation
Indices: 65439063--65439246 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
65439053 CTTGCACAAG
* * *
65439063 GCCTTCGGGTCTTATCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
65439103 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
65439143 GCCTTCGAGTCTTAGCCCGGATATAATCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
65439183 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
*
65439223 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
65439247 CATTCGAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 128 0.99
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:65439162 original size:80 final size:80
Alignment explanation
Indices: 65439027--65439246 Score: 275
Period size: 80 Copynumber: 2.8 Consensus size: 80
65439017 CTCAAGAAAT
* * * * * * **
65439027 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTATCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
*
65439090 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* *
65439105 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGAGTCTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
65439169 TCACTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * *
65439185 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
65439247 CATTCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
78 12 0.10
79 16 0.13
80 94 0.77
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAAT
CACTAGCACAAATGC
Found at i:65449731 original size:24 final size:24
Alignment explanation
Indices: 65449658--65449731 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
65449648 CATTTCCCGT
*
65449658 CATGTTGCCATGGTATCTTTCAAC
1 CATGTTGCCATAGTATCTTTCAAC
* *
65449682 CATG--GTCTTA-T-TCATTTCCCAA-
1 CATGTTGCCATAGTATC-TTT--CAAC
65449704 CATGTTGCCATAGTATCTTTCAAC
1 CATGTTGCCATAGTATCTTTCAAC
65449728 CATG
1 CATG
65449732 GTCTTACACA
Statistics
Matches: 37, Mismatches: 5, Indels: 16
0.64 0.09 0.28
Matches are distributed among these distances:
20 2 0.05
21 4 0.11
22 7 0.19
23 6 0.16
24 12 0.32
25 4 0.11
26 2 0.05
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.38
Consensus pattern (24 bp):
CATGTTGCCATAGTATCTTTCAAC
Found at i:65449813 original size:138 final size:138
Alignment explanation
Indices: 65449565--65449930 Score: 491
Period size: 138 Copynumber: 2.7 Consensus size: 138
65449555 TTTATCTTTG
* * * * *
65449565 ACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATC
1 ACATGTTGCCATAGTATCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTATC
** * * *
65449629 TTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
65 TTTCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCTTTCAACCATGGTCTTATT
*
65449694 CATTTCCCA
130 CATTTCACA
* *
65449703 ACATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGTCATGGTATTT
1 ACATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCT
* * **
65449768 TTCAACCATGGTCTTACACATTTTATATAATGTTGTGATGGTATCTTTCAACCATGGTCTTATTC
66 TTCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
**
65449833 ATTTCATG
131 ATTTCACA
* * * * *
65449841 TCACGTTGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATATCACGTTGCCATGGTATCT
1 ACATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCT
*
65449906 TTCAATCATGGTCTTACACATTTCA
66 TTCAACCATGGTCTTACACATTTCA
65449931 TTTCAAAGAG
Statistics
Matches: 199, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
137 4 0.02
138 195 0.98
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (138 bp):
ACATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCT
TTCAACCATGGTCTTACACATTTCACATAATGTTGCCATGGTATCTTTCAACCATGGTCTTATTC
ATTTCACA
Found at i:65449929 original size:46 final size:46
Alignment explanation
Indices: 65449566--65449931 Score: 446
Period size: 46 Copynumber: 8.0 Consensus size: 46
65449556 TTATCTTTGA
* * * * * *
65449566 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
** ***
65449612 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** ** *
65449658 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCAA
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
65449704 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * *
65449750 CATGTTGTCATGGTATTTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** *
65449796 AATGTTGTGATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
65449842 CACGTTGCCATGGTATCTTTCAACCATGGTCTTAAACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
65449888 CACGTTGCCATGGTATCTTTCAATCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
65449932 TTCAAAGAGC
Statistics
Matches: 285, Mismatches: 34, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
45 4 0.01
46 281 0.99
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:65450490 original size:55 final size:55
Alignment explanation
Indices: 65450406--65450515 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
65450396 GAAATTGCAG
65450406 AAATATTAAGAGTCAGGGACATTTTGGTAATTTACTATTTTCCCAATTTTCACCC
1 AAATATTAAGAGTCAGGGACATTTTGGTAATTTACTATTTTCCCAATTTTCACCC
*
65450461 AAATATTAAGATTCAGGGACATTTTGGTAATTTACTATTTTCCCAATTTTCACCC
1 AAATATTAAGAGTCAGGGACATTTTGGTAATTTACTATTTTCCCAATTTTCACCC
65450516 GATCATAAAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (55 bp):
AAATATTAAGAGTCAGGGACATTTTGGTAATTTACTATTTTCCCAATTTTCACCC
Done.