Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 99090824
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 99090824
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 317 characters in sequence are not A, C, G, or T
File 209 of 318
Found at i:65746539 original size:91 final size:88
Alignment explanation
Indices: 65746386--65746548 Score: 245
Period size: 91 Copynumber: 1.8 Consensus size: 88
65746376 GCCCATAAGT
*** *
65746386 GAACTCGGACTCAACTCAACAGCTCGGGGTTTGATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGGACTCAACTCAACAGCTCGACATTCGATCCATAAGTGAACTCGGACTCAACTCAACGA
65746451 GTTCGGATCCTAGTTACATCTCAC
66 G-TCGGATCCTAGTTACATCTCAC
* *
65746475 GAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGGCTCAACTCAAC
1 GAACTCGGACTCAACTCAAC-AGCTCGACATTCG-ATCCATAAGTGAACTCGGACTCAACTCAAC
65746540 GAGTCGGAT
64 GAGTCGGAT
65746549 GCCCAAATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
89 20 0.30
90 14 0.21
91 32 0.48
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (88 bp):
GAACTCGGACTCAACTCAACAGCTCGACATTCGATCCATAAGTGAACTCGGACTCAACTCAACGA
GTCGGATCCTAGTTACATCTCAC
Found at i:65748945 original size:15 final size:15
Alignment explanation
Indices: 65748923--65749000 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
65748913 AAGAAACCGA
65748923 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
65748938 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
65748952 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
65748967 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
65748983 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
65748998 ATA
1 ATA
65749001 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:65748955 original size:30 final size:29
Alignment explanation
Indices: 65748913--65749000 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 29
65748903 CAAAGATAAC
65748913 AAGAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCAGAATAAAGAAATCCAAGATA
*
65748941 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAA-CCAGAATAAAGAAATCCAAG-ATA
* * *
65748971 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCAGAATAAAGAAATCCAAGATA
65749001 CGATACTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
28 5 0.10
29 4 0.08
30 38 0.76
31 3 0.06
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCAGAATAAAGAAATCCAAGATA
Found at i:65752010 original size:93 final size:93
Alignment explanation
Indices: 65751898--65752069 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
65751888 GCCCATAAGT
* *
65751898 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65751963 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
65751991 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65752056 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
65752070 CAAATATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:65752065 original size:46 final size:46
Alignment explanation
Indices: 65751890--65752065 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
65751880 TGTAACCCGC
* * *
65751890 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
65751936 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
65751986 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
65752029 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65752066 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:65754065 original size:16 final size:16
Alignment explanation
Indices: 65754044--65754075 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
65754034 AAATTCGAGA
65754044 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
65754060 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
65754076 GCGTTACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:65755954 original size:39 final size:39
Alignment explanation
Indices: 65755915--65756067 Score: 207
Period size: 39 Copynumber: 3.9 Consensus size: 39
65755905 ATTCCATTCT
* * * * *
65755915 AGCATGTAGCTTGCGGACTTCAAGTCCGGATATATTTCT
1 AGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCC
* *
65755954 AGCATATAGCCTGCAGACCTCATGTCTGGATATATTTCC
1 AGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCC
** *
65755993 AGCATATAGCCTGCGGACCTCATGTCCGGGCATATTCCC
1 AGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCC
*
65756032 AGCATATAGTCTGCGGACCTCATGTCCGGATATATT
1 AGCATATAGCCTGCGGACCTCATGTCCGGATATATT
65756068 CCCAATATCA
Statistics
Matches: 99, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (39 bp):
AGCATATAGCCTGCGGACCTCATGTCCGGATATATTTCC
Found at i:65762219 original size:40 final size:40
Alignment explanation
Indices: 65762164--65762340 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
65762154 CGGATGATAA
65762164 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
65762204 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
65762244 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
65762284 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
65762324 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
65762341 ATACTTGGGT
Statistics
Matches: 131, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 118 0.90
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:65762609 original size:22 final size:22
Alignment explanation
Indices: 65762567--65762610 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
65762557 AAAATGTGCA
* *
65762567 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
65762589 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
65762611 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:65763212 original size:40 final size:40
Alignment explanation
Indices: 65763157--65763288 Score: 214
Period size: 40 Copynumber: 3.3 Consensus size: 40
65763147 ACCCTAAACC
65763157 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
*
65763197 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
* *
65763237 CTAGGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
65763276 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
65763289 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 12 0.14
40 73 0.85
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
Found at i:65763557 original size:22 final size:22
Alignment explanation
Indices: 65763515--65763558 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
65763505 AAAATGTGCA
* *
65763515 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
65763537 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
65763559 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:65771325 original size:40 final size:40
Alignment explanation
Indices: 65771270--65771446 Score: 304
Period size: 40 Copynumber: 4.5 Consensus size: 40
65771260 CGGATGATAA
65771270 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
65771310 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
65771350 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
65771390 CCGGGCTAGGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
65771430 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
65771447 ATACTTGGGT
Statistics
Matches: 131, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 118 0.90
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:65771715 original size:22 final size:22
Alignment explanation
Indices: 65771673--65771716 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
65771663 AAAATGTGCA
* *
65771673 TATATGAAGTTATTCATTTAGC
1 TATATGAAGTTATACACTTAGC
65771695 TATATGAATGTTATAC-CTTAGC
1 TATATGAA-GTTATACACTTAGC
65771717 CGAAACTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATATGAAGTTATACACTTAGC
Found at i:65776334 original size:39 final size:39
Alignment explanation
Indices: 65776226--65776337 Score: 154
Period size: 39 Copynumber: 2.9 Consensus size: 39
65776216 TTCTAGCACG
* * * * *
65776226 TAGCCTGCGGACTTCAAGTTCGGATATATTTCTAGCATA
1 TAGCCTGCGGACCTCATGTCCGGATATATTCCCAGCATA
*
65776265 TAGCCTGCGGACCTCATGTCTCGG-CATATTCCCAGCATA
1 TAGCCTGCGGACCTCATGTC-CGGATATATTCCCAGCATA
65776304 TAGCCTGCGGACCTCATGTCCGGATATATTCCCA
1 TAGCCTGCGGACCTCATGTCCGGATATATTCCCA
65776338 ATATCATGCA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
38 3 0.05
39 58 0.91
40 3 0.05
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (39 bp):
TAGCCTGCGGACCTCATGTCCGGATATATTCCCAGCATA
Found at i:65793493 original size:29 final size:29
Alignment explanation
Indices: 65793460--65793591 Score: 165
Period size: 29 Copynumber: 4.6 Consensus size: 29
65793450 GTGACGAGAT
*
65793460 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* *
65793489 TGGCACTAAGTGTGCGTGCTAGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
65793518 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
65793547 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* **
65793576 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
65793592 AGCTCGAAGG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:65801425 original size:40 final size:40
Alignment explanation
Indices: 65801388--65801612 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
65801378 GCTACTCGTT
* *
65801388 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
65801428 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
65801468 CAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
65801508 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
65801547 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
65801588 CAAA-GCCTTCTGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
65801613 CATCATTCGA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 119 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:65801572 original size:119 final size:120
Alignment explanation
Indices: 65801390--65801605 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 120
65801380 TACTCGTTCA
*
65801390 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
65801455 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
* **
65801510 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
65801572 ATATAGTCACTTAGCACAAAGCCTTCTGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
65801606 GCCCGGACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.05
119 61 0.72
120 20 0.24
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCACC
Found at i:65804745 original size:49 final size:49
Alignment explanation
Indices: 65804678--65804810 Score: 153
Period size: 49 Copynumber: 2.7 Consensus size: 49
65804668 GTACATTAAA
* *
65804678 GTCGATGCCGTGTCCCAGACAAGTCTTATACTGACTTTCATATATCAAG-
1 GTCGATGCCATGTCCCAGACAAGTCTTATACTGACTCTCATATATC-AGT
* * * * *
65804727 GTCGATGCCATGTGCCAGA-AAGGTCTTACACTGGCTCTCATTTATCGGT
1 GTCGATGCCATGTCCCAGACAA-GTCTTATACTGACTCTCATATATCAGT
* *
65804776 GTCGATGCCATGTCCCAGACAGGTCTTATATTGAC
1 GTCGATGCCATGTCCCAGACAAGTCTTATACTGAC
65804811 ACACAACAAG
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
48 3 0.04
49 65 0.94
50 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAAGTCTTATACTGACTCTCATATATCAGT
Found at i:65810267 original size:23 final size:22
Alignment explanation
Indices: 65810195--65810282 Score: 92
Period size: 21 Copynumber: 4.1 Consensus size: 22
65810185 TACCTGATCA
* *
65810195 GAATATGACACATAA-GTGCCT
1 GAATACGACACACAAGGTGCCT
65810216 GAA-ACGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
65810237 G-CTGCGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
65810258 GAAATACGACACATAAAGTGCCT
1 G-AATACGACACACAAGGTGCCT
65810281 GA
1 GA
65810283 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
20 9 0.16
21 28 0.51
22 1 0.02
23 17 0.31
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (22 bp):
GAATACGACACACAAGGTGCCT
Found at i:65810281 original size:44 final size:41
Alignment explanation
Indices: 65810201--65810281 Score: 108
Period size: 44 Copynumber: 1.9 Consensus size: 41
65810191 ATCAGAATAT
* *
65810201 GACACATAAGTGCCTGAAACGACACACAAGGTGCCTGCTGC
1 GACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTGC
*
65810242 GACACACAAGGTGCCTGAAATACGACACATAAAGTGCCTG
1 GACACACAA-GTGCCTG-AA-ACGACACACAAAGTGCCTG
65810282 ATCAGTAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 8 0.24
42 7 0.21
43 2 0.06
44 17 0.50
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (41 bp):
GACACACAAGTGCCTGAAACGACACACAAAGTGCCTGCTGC
Found at i:65810499 original size:23 final size:23
Alignment explanation
Indices: 65810473--65810566 Score: 80
Period size: 28 Copynumber: 3.6 Consensus size: 23
65810463 AAATGTCCAA
65810473 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
65810496 CCAAAACACACCAGTATCGTATAATCCT
1 CCAAAACACACC---A--GTATAATCCT
*
65810524 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG-----TATAATCC-T
65810553 CCAAAACACACCAG
1 CCAAAACACACCAG
65810567 AATAGCATAA
Statistics
Matches: 58, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
23 13 0.22
25 1 0.02
26 1 0.02
28 29 0.50
29 14 0.24
ACGTcount: A:0.45, C:0.34, G:0.05, T:0.16
Consensus pattern (23 bp):
CCAAAACACACCAGTATAATCCT
Found at i:65810576 original size:29 final size:28
Alignment explanation
Indices: 65810485--65810576 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
65810475 AAAACACACC
*
65810485 AGTATAATCCTCCAAAACACACCAGTAT
1 AGTATAATCCTCCAAAACACACCAGAAT
* *
65810513 CGTATAATCCTCCCAAACACACCAGAAT
1 AGTATAATCCTCCAAAACACACCAGAAT
*
65810541 AATATAATCCATCCAAAACACACCAGAAT
1 AGTATAATCC-TCCAAAACACACCAGAAT
*
65810570 AGCATAA
1 AGTATAA
65810577 AGTGCCTCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 33 0.60
29 22 0.40
ACGTcount: A:0.46, C:0.29, G:0.07, T:0.18
Consensus pattern (28 bp):
AGTATAATCCTCCAAAACACACCAGAAT
Found at i:65817634 original size:20 final size:20
Alignment explanation
Indices: 65817605--65817649 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
65817595 AGCACATGTA
* *
65817605 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
65817625 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
65817645 TTCAT
1 TTCAT
65817650 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:65819163 original size:95 final size:94
Alignment explanation
Indices: 65818998--65819176 Score: 236
Period size: 95 Copynumber: 1.9 Consensus size: 94
65818988 GAAGTCCGTA
* ** *
65818998 AAGACATTAAACATGGGGTATATTGTGTAAGACCATAACTTGACTATGACAACATAGAGAGTCTG
1 AAGACATTAAACATGGGGTACAAGGTGTAAGACCATAACTTGACTATGACAACATAGAGAGTCTA
*
65819063 TCAGGACAGTAAACATGGGGAAGTCTACC
66 CCAGGACAGTAAACATGGGGAAGTCTACC
* * *
65819092 AAGACATTAAACATCGGGTTACAAGGTGTAAGACCATAACTTGACTTTGGCAACTGATAGA-A-T
1 AAGACATTAAACAT-GGGGTACAAGGTGTAAGACCATAACTTGACTATGACAAC--ATAGAGAGT
*
65819155 CTACCAGGACATTAAACATGGG
63 CTACCAGGACAGTAAACATGGG
65819177 TTTAGGCTGG
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
94 14 0.19
95 53 0.73
96 1 0.01
97 5 0.07
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.23
Consensus pattern (94 bp):
AAGACATTAAACATGGGGTACAAGGTGTAAGACCATAACTTGACTATGACAACATAGAGAGTCTA
CCAGGACAGTAAACATGGGGAAGTCTACC
Found at i:65825891 original size:40 final size:40
Alignment explanation
Indices: 65825790--65825940 Score: 178
Period size: 40 Copynumber: 3.7 Consensus size: 40
65825780 ACTCAAATTC
* * *
65825790 TCGCACACTAAGTGCCAATACATAGCTGAAACTATTTC-AA
1 TCGCACACTAAGTGCC-ATACATAGCCGAAGCTATCTCGAA
* *
65825830 TCTCACACACTAAGTGGCATACATAGCCGAAGCTATCTCGAA
1 --TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* * *
65825872 TCGCACACTAAGTGCCATACATAGCCAAAGTTATCTTGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
* *
65825912 TAGCACACTAAGTGCCGTACATAGCCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAA
65825941 TTGCCGTCAA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
40 61 0.64
41 18 0.19
42 16 0.17
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:65829511 original size:40 final size:40
Alignment explanation
Indices: 65829403--65829512 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
65829393 ATTGAATGAT
* * * * *
65829403 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
65829443 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
65829483 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
65829513 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:65829527 original size:40 final size:39
Alignment explanation
Indices: 65829403--65829552 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
65829393 ATTGAATGAT
* * * * * * *
65829403 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
65829443 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
65829483 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
65829523 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
65829553 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:65833075 original size:48 final size:48
Alignment explanation
Indices: 65832997--65833361 Score: 245
Period size: 48 Copynumber: 7.6 Consensus size: 48
65832987 AGGGTGAATT
* * * * * * **
65832997 GCCGATGCCATATTCTAAACATGGTATTACATTGGCTCACATGTTGAG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAG
* * * * *
65833045 GCCGATGCCATGTCCTAGACATCGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAG
* * * **
65833093 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACAT-ATCAAG
* ** * * *
65833141 GCTGATGTTATGTCCTAGACATGGTCTTACACTAGCACACATATCAAT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAG
* * * * **
65833189 ACCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TACATT
1 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATAT-CAAG
* * * * **
65833237 GCCGATGCCATGTTCC-AAACATGGTCTTACAATGGGTCTCAT-TACATT
1 GCCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATAT-CAAG
* * * * * * **
65833285 GCTGATGCTATGTTCC-AAACATGGTCTCACACTGGTTCTCATATCGTG
1 GCCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCACATATCAAG
*
65833333 GCCGATGCCATGTCTTAGACATGGTCTTA
1 GCCGATGCCATGTCCTAGACATGGTCTTA
65833362 GATTAGCACA
Statistics
Matches: 254, Mismatches: 57, Indels: 12
0.79 0.18 0.04
Matches are distributed among these distances:
47 5 0.02
48 244 0.96
49 5 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATATCAAG
Found at i:65833259 original size:96 final size:96
Alignment explanation
Indices: 65833044--65833378 Score: 338
Period size: 96 Copynumber: 3.5 Consensus size: 96
65833034 CACATGTTGA
* * * * *
65833044 GGCCGATGCCATGTCCTAGACATCGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCC
1 GGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATACCGATGCCATGTCCC
65833109 AGACATGATCTTACACTGGCTCTCATAATGT
66 AGACATGATCTTACACTGGCTCTCATAATGT
* **
65833140 GGCTGATGTTATGTCCTAGACATGGTCTTACACTAGCACACATATCAATACCGATGCCATGTCCC
1 GGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATACCGATGCCATGTCCC
* *
65833205 AGACATGGTCTTACATTGGCTCTCATTACAT-T
66 AGACATGATCTTACACTGGCTCTCA-TA-ATGT
* * * ** * * * * * *
65833237 -GCCGATGCCATGTTCC-AAACATGGTCTTACAATGGGTCTCAT-TACATTGCTGATGCTATGTT
1 GGCCGATGCCATG-TCCTAGACATGGTCTTACACTAGCACACATAT-CAATACCGATGCCATGTC
* * * *
65833299 CCAAACATGGTCTCACACTGGTTCTCAT-ATCGT
64 CCAGACATGATCTTACACTGGCTCTCATAAT-GT
* * *
65833332 GGCCGATGCCATGTCTTAGACATGGTCTTAGATTAGCACACATATCA
1 GGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCA
65833379 CCCAAATGTC
Statistics
Matches: 194, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
93 2 0.01
95 5 0.03
96 178 0.92
97 7 0.04
98 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (96 bp):
GGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCACACATATCAATACCGATGCCATGTCCC
AGACATGATCTTACACTGGCTCTCATAATGT
Found at i:65833277 original size:144 final size:144
Alignment explanation
Indices: 65833046--65833361 Score: 372
Period size: 144 Copynumber: 2.2 Consensus size: 144
65833036 CATGTTGAGG
* *
65833046 CCGATGCCATGTCCTAGACATCGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAA
* * * *
65833111 ACATGATCTTACACTGGCTCTCA-TA-ATGTGGCTGATGTTATG-TCCTAGACATGGTCTTACAC
66 ACATGATCTTACAATGGCTCTCATTACAT-T-GCTGATGCTATGTTCC-AAACATGGTCTCACAC
65833173 TAGCACACATATCAAT-A
128 TAGCACACATATC-ATGA
* * * * *
65833190 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCAT-TACATTGCCGATGCCATGTTCCA
1 CCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCT-CAATGCCGATGCCATGTCCCA
* * *
65833254 AACATGGTCTTACAATGGGTCTCATTACATTGCTGATGCTATGTTCCAAACATGGTCTCACACTG
65 AACATGATCTTACAATGGCTCTCATTACATTGCTGATGCTATGTTCCAAACATGGTCTCACACTA
** * * *
65833319 GTTCTCATATCGTGG
130 GCACACATATCATGA
*
65833334 CCGATGCCATGTCTTAGACATGGTCTTA
1 CCGATGCCATGTCCTAGACATGGTCTTA
65833362 GATTAGCACA
Statistics
Matches: 146, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
143 2 0.01
144 136 0.93
145 6 0.04
146 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (144 bp):
CCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAA
ACATGATCTTACAATGGCTCTCATTACATTGCTGATGCTATGTTCCAAACATGGTCTCACACTAG
CACACATATCATGA
Found at i:65837069 original size:9 final size:9
Alignment explanation
Indices: 65837055--65837126 Score: 99
Period size: 9 Copynumber: 8.0 Consensus size: 9
65837045 AACTAAAATC
65837055 TTGAGAGAA
1 TTGAGAGAA
65837064 TTGAGAGAA
1 TTGAGAGAA
* *
65837073 TTAAGAGAC
1 TTGAGAGAA
65837082 TTGAGAGAA
1 TTGAGAGAA
65837091 TTGAGAGAA
1 TTGAGAGAA
* *
65837100 TTAAGAGAC
1 TTGAGAGAA
65837109 TTGAGAGAA
1 TTGAGAGAA
*
65837118 TTGATAGAA
1 TTGAGAGAA
65837127 ATGGATTAGA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 54 1.00
ACGTcount: A:0.44, C:0.03, G:0.29, T:0.24
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:65837088 original size:27 final size:27
Alignment explanation
Indices: 65837054--65837126 Score: 137
Period size: 27 Copynumber: 2.7 Consensus size: 27
65837044 GAACTAAAAT
65837054 CTTGAGAGAATTGAGAGAATTAAGAGA
1 CTTGAGAGAATTGAGAGAATTAAGAGA
65837081 CTTGAGAGAATTGAGAGAATTAAGAGA
1 CTTGAGAGAATTGAGAGAATTAAGAGA
*
65837108 CTTGAGAGAATTGATAGAA
1 CTTGAGAGAATTGAGAGAA
65837127 ATGGATTAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.44, C:0.04, G:0.29, T:0.23
Consensus pattern (27 bp):
CTTGAGAGAATTGAGAGAATTAAGAGA
Found at i:65837977 original size:15 final size:16
Alignment explanation
Indices: 65837932--65837976 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
65837922 TTAACAACAA
* *
65837932 TTTTCAAATTATATAAT
1 TTTTCAAATT-TTTATT
65837949 TTTTCAAATTTTTATT
1 TTTTCAAATTTTTATT
*
65837965 TTTTGAAATTTT
1 TTTTCAAATTTT
65837977 AGAACTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (16 bp):
TTTTCAAATTTTTATT
Found at i:65838083 original size:8 final size:8
Alignment explanation
Indices: 65838055--65838103 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
65838045 CGATAGTTTA
65838055 TTTAATTT
1 TTTAATTT
* *
65838063 TATAAAATT
1 T-TTAATTT
65838072 TTTAATTT
1 TTTAATTT
65838080 TTTAATTT
1 TTTAATTT
*
65838088 TTTAACTT
1 TTTAATTT
65838096 TTTAATTT
1 TTTAATTT
65838104 ATATTTATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
8 28 0.82
9 6 0.18
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTAATTT
Found at i:65839921 original size:27 final size:28
Alignment explanation
Indices: 65839891--65839945 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
65839881 TTTCTAATTA
* * *
65839891 AATTCAATTTTAAT-TTTTTTATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
*
65839918 AATTTAATTTAAATACTTTATATATTTT
1 AATTCAATTTAAATACTTTATATATTTT
65839946 TTTAAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (28 bp):
AATTCAATTTAAATACTTTATATATTTT
Found at i:65840436 original size:18 final size:18
Alignment explanation
Indices: 65840410--65840450 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
65840400 TACCATATTA
*
65840410 TATTTCATACTATATTTT
1 TATTACATACTATATTTT
65840428 TATTACATACTATATTTT
1 TATTACATACTATATTTT
65840446 TATTA
1 TATTA
65840451 TTCAATATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.59
Consensus pattern (18 bp):
TATTACATACTATATTTT
Found at i:65840500 original size:15 final size:15
Alignment explanation
Indices: 65840482--65840525 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
65840472 TATCTTTCTC
65840482 ATATATT-TTTTTATT
1 ATATATTATTTTT-TT
65840497 ATATATTATTTTTTT
1 ATATATTATTTTTTT
65840512 ATACTAATTATTTT
1 ATA-T-ATTATTTT
65840526 ACCATATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 12 0.46
16 6 0.23
17 8 0.31
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (15 bp):
ATATATTATTTTTTT
Found at i:65840521 original size:17 final size:18
Alignment explanation
Indices: 65840485--65840525 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
65840475 CTTTCTCATA
65840485 TATTTTTTTATTATATAT
1 TATTTTTTTATTATATAT
65840503 TATTTTTTTA-TACTA-AT
1 TATTTTTTTATTA-TATAT
65840520 TATTTT
1 TATTTT
65840526 ACCATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTTTTATTATATAT
Found at i:65840600 original size:21 final size:19
Alignment explanation
Indices: 65840550--65840601 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 19
65840540 TGCAAAATAC
65840550 TTATTATATTTTTATTATTT
1 TTATTATATTTTTATTA-TT
65840570 TATATTATATTTCCTTA-TATT
1 T-TATTATATTT--TTATTATT
65840591 TTATTCATATT
1 TTATT-ATATT
65840602 ATAATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 5 0.18
21 18 0.64
22 2 0.07
23 3 0.11
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTATATTTTTATTATT
Found at i:65849148 original size:8 final size:8
Alignment explanation
Indices: 65849135--65849168 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
65849125 GATTTATTTT
65849135 TGAAAATG
1 TGAAAATG
*
65849143 TGAAAAAG
1 TGAAAATG
65849151 TGAAAATG
1 TGAAAATG
65849159 TGAAAATG
1 TGAAAATG
65849167 TG
1 TG
65849169 TGGTTAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (8 bp):
TGAAAATG
Found at i:65852293 original size:29 final size:28
Alignment explanation
Indices: 65852259--65852361 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
65852249 TACTCAATCA
*
65852259 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
65852288 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
65852317 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
65852346 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
65852362 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:65860306 original size:29 final size:28
Alignment explanation
Indices: 65860272--65860374 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
65860262 TACTCAATCA
*
65860272 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
65860301 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
65860330 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
65860359 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
65860375 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:65868124 original size:29 final size:28
Alignment explanation
Indices: 65868090--65868192 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
65868080 TACTCAATCA
*
65868090 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
65868119 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
65868148 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
65868177 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
65868193 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:65873928 original size:93 final size:93
Alignment explanation
Indices: 65873821--65873991 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
65873811 GCCCCTAAGT
* *
65873821 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
65873886 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
65873914 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
65873979 CGAGTTCGGATGC
66 CGAGTTCGGATGC
65873992 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:65873988 original size:46 final size:46
Alignment explanation
Indices: 65873816--65873988 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
65873806 AACCCGCCCC
* * *
65873816 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * * *
65873862 TAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
65873910 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
65873955 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
65873989 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:65874444 original size:30 final size:30
Alignment explanation
Indices: 65874410--65874469 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
65874400 ATTTAATACG
65874410 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
65874440 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
65874470 GGCTCGGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:65876157 original size:26 final size:26
Alignment explanation
Indices: 65876121--65876179 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
65876111 TGGCCCTTCA
*
65876121 GAGCTTCCTGATTAAAGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTCGT
**
65876147 GAGCTTCCTGATTATTGGCTCTTCGT
1 GAGCTTCCTGATTAAAGGCTCTTCGT
65876173 -AGCTTCC
1 GAGCTTCC
65876180 CGATGTATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 7 0.23
26 23 0.77
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.39
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAGGCTCTTCGT
Found at i:65878741 original size:46 final size:45
Alignment explanation
Indices: 65878691--65878863 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
65878681 GTTGAGCATC
** *
65878691 CGAACTCGTTGAGTTGAGTTTGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCAAATGTT
* * * * *
65878737 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCAA--ATG--TT
* *
65878784 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCAAATGTT
*
65878830 CGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGG
65878864 GGCGGGTTAC
Statistics
Matches: 105, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
45 6 0.06
46 56 0.53
47 28 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCAAATGTT
Found at i:65878845 original size:93 final size:93
Alignment explanation
Indices: 65878686--65878856 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
65878676 GGATGGTTGA
** * * *
65878686 GCATCCGAACTCGTTGAGTTGAGTTTGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACGCTCGAACTCGTTGAGT
65878751 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
65878779 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACGCTCGAACTCGTTGAGT
65878844 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
65878857 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACGCTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65881721 original size:46 final size:45
Alignment explanation
Indices: 65881671--65881846 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 45
65881661 TGTTTGGGCA
65881671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
65881717 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
65881764 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
65881810 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65881847 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 67 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65881826 original size:93 final size:93
Alignment explanation
Indices: 65881667--65881838 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
65881657 AGGATGTTTG
*
65881667 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
65881732 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
65881760 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGA
65881824 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
65881839 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65884794 original size:15 final size:15
Alignment explanation
Indices: 65884774--65884841 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
65884764 GTATCTTGGG
65884774 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
65884789 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
*
65884804 TTTCTTTATTCTGG-
1 TTTCTTTATCCTGGA
* * *
65884818 GTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
65884833 TTTCTTTAT
1 TTTCTTTAT
65884842 TCGGTTTCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
14 10 0.23
15 33 0.77
ACGTcount: A:0.12, C:0.18, G:0.13, T:0.57
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:65884837 original size:29 final size:30
Alignment explanation
Indices: 65884765--65884843 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
65884755 CATAGTATCG
* * *
65884765 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
*
65884795 TAT-TCTGGATTTCTTTATTCTGGGT-TCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
65884824 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
65884844 GGTTTCTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
29 22 0.51
30 21 0.49
ACGTcount: A:0.11, C:0.18, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:65887274 original size:46 final size:45
Alignment explanation
Indices: 65887224--65887399 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
65887214 TGTTTGGGCA
65887224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
65887270 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
65887317 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
65887363 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65887400 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65887379 original size:93 final size:93
Alignment explanation
Indices: 65887220--65887392 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
65887210 AGGATGTTTG
* *
65887220 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65887285 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
65887313 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65887378 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
65887393 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:65900025 original size:41 final size:41
Alignment explanation
Indices: 65899960--65900039 Score: 135
Period size: 41 Copynumber: 1.9 Consensus size: 41
65899950 ACAGGGGTTT
65899960 TCACACGGCCAGACACACGCCCGTGTCAATAGCCCGTGTCCC
1 TCACACGGCCAGA-ACACGCCCGTGTCAATAGCCCGTGTCCC
65900002 TCACACGGCCACG-ACACGCCCGTGTCAATAGCCCGTGT
1 TCACACGGCCA-GAACACGCCCGTGTCAATAGCCCGTGT
65900040 GCAATAGTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
41 25 0.68
42 11 0.30
43 1 0.03
ACGTcount: A:0.21, C:0.41, G:0.23, T:0.15
Consensus pattern (41 bp):
TCACACGGCCAGAACACGCCCGTGTCAATAGCCCGTGTCCC
Found at i:65905927 original size:10 final size:10
Alignment explanation
Indices: 65905912--65905963 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
65905902 GCCTAAGATG
*
65905912 TGAATTGAAT
1 TGAATTAAAT
65905922 TGAATTAAAT
1 TGAATTAAAT
* *
65905932 TAAATATGAAT
1 TGAAT-TAAAT
*
65905943 TGTATTAAAT
1 TGAATTAAAT
*
65905953 TGAGTTAAAT
1 TGAATTAAAT
65905963 T
1 T
65905964 TACTCGTATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
10 26 0.79
11 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (10 bp):
TGAATTAAAT
Found at i:65905941 original size:26 final size:26
Alignment explanation
Indices: 65905912--65905962 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
65905902 GCCTAAGATG
*
65905912 TGAATTGAATTGAATTAAATTAAATA
1 TGAATTGAATTAAATTAAATTAAATA
* * *
65905938 TGAATTGTATTAAATTGAGTTAAAT
1 TGAATTGAATTAAATTAAATTAAAT
65905963 TTACTCGTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (26 bp):
TGAATTGAATTAAATTAAATTAAATA
Found at i:65905943 original size:16 final size:15
Alignment explanation
Indices: 65905914--65905963 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
65905904 CTAAGATGTG
*
65905914 AATTGAATTGAATTA
1 AATTAAATTGAATTA
*
65905929 AATTAAATATGAATTG
1 AATTAAAT-TGAATTA
* *
65905945 TATTAAATTGAGTTA
1 AATTAAATTGAATTA
65905960 AATT
1 AATT
65905964 TACTCGTATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (15 bp):
AATTAAATTGAATTA
Found at i:65906604 original size:25 final size:25
Alignment explanation
Indices: 65906576--65906632 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
65906566 AGCCTGGAAA
*
65906576 AGCTTCCCGTTACAAGGCTTACATG
1 AGCTTCCCGTTACAAGGCTCACATG
*
65906601 AGCTTCCCGTTACATGGCTCACATG
1 AGCTTCCCGTTACAAGGCTCACATG
65906626 AGCTTCC
1 AGCTTCC
65906633 TGTTTATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.21, C:0.32, G:0.19, T:0.28
Consensus pattern (25 bp):
AGCTTCCCGTTACAAGGCTCACATG
Found at i:65914946 original size:47 final size:47
Alignment explanation
Indices: 65914894--65915087 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
65914884 TTAGGATTTT
** * * *
65914894 ATGTGATGAATGTGAATGTGTATTTATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65914941 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
65914988 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
65915035 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
65915082 ATGTGA
1 ATGTGA
65915088 AATTTGTATG
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 132 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:65914994 original size:22 final size:22
Alignment explanation
Indices: 65914923--65914994 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
65914913 GTATTTATGA
65914923 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
65914945 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
65914970 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
65914992 GAT
1 GAT
65914995 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:65915043 original size:25 final size:25
Alignment explanation
Indices: 65914968--65915043 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
65914958 ATGCATATAT
65914968 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
65914993 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
65915015 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
65915040 GTGA
1 GTGA
65915044 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:65915214 original size:98 final size:96
Alignment explanation
Indices: 65915058--65915241 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
65915048 GAACATGCAT
*
65915058 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGAAATGTATATGTGGTAAAGCCGA
65915123 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
65915154 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAAT-T-TATATGAGAAATGTATATGTGGTAAAGC
*
65915218 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
65915242 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 30 0.37
97 1 0.01
98 49 0.60
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:65915257 original size:50 final size:48
Alignment explanation
Indices: 65915057--65915241 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
65915047 TGAACATGCA
* *
65915057 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
65915105 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
65915153 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
65915203 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
65915242 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:65915495 original size:37 final size:37
Alignment explanation
Indices: 65915387--65915495 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
65915377 GAAAATATAT
* *
65915387 TCCGGGTAAGACCAGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
65915424 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
65915461 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
65915496 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:65918197 original size:25 final size:25
Alignment explanation
Indices: 65918169--65918216 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
65918159 CAGCTCTTAT
*
65918169 GAGCGTCCCG-TTATATGGCTCTTCG
1 GAGCGTCCCGATTA-AAGGCTCTTCG
*
65918194 GAGCTTCCCGATTAAAGGCTCTT
1 GAGCGTCCCGATTAAAGGCTCTT
65918217 TGTGAGCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 17 0.85
26 3 0.15
ACGTcount: A:0.17, C:0.27, G:0.25, T:0.31
Consensus pattern (25 bp):
GAGCGTCCCGATTAAAGGCTCTTCG
Found at i:65918232 original size:26 final size:25
Alignment explanation
Indices: 65918185--65918256 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
65918175 CCCGTTATAT
65918185 GGCTCTTCGGAGCTTCCCGATTAAA
1 GGCTCTTCGGAGCTTCCCGATTAAA
* * *
65918210 GGCTCTTTGTGAGCTTCCTGATTATCA
1 GGCTCTTCG-GAGCTTCCCGATTA-AA
* *
65918237 -GCTCTCCGTAGCTTCCCGAT
1 GGCTCTTCGGAGCTTCCCGAT
65918257 ATGGCTTACT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
25 18 0.47
26 19 0.50
27 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.22, T:0.33
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCCGATTAAA
Found at i:65918359 original size:24 final size:24
Alignment explanation
Indices: 65918294--65918361 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 24
65918284 GGCTATCCGA
*
65918294 AGCTTCCTGATTAATGGCTCTTCAG
1 AGCTTCCTGATT-ATGGCTCGTCAG
65918319 AGCTATCC-G-TTATTGGCTCGT-ATG
1 AGCT-TCCTGATTA-TGGCTCGTCA-G
65918343 AGCTTCCTGATTATGGCTC
1 AGCTTCCTGATTATGGCTC
65918362 TTTCGAGCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
23 5 0.14
24 21 0.57
25 8 0.22
26 3 0.08
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.37
Consensus pattern (24 bp):
AGCTTCCTGATTATGGCTCGTCAG
Found at i:65918396 original size:49 final size:49
Alignment explanation
Indices: 65918293--65918400 Score: 123
Period size: 49 Copynumber: 2.2 Consensus size: 49
65918283 TGGCTATCCG
* * * *
65918293 AAGCTTCCTGATTAATGGCTCTTCAGAGCTATCCGTTATTGGCTCGTAT
1 AAGCTTCCTGATTAATGGCTCTTCAGAGCTATCAGTTATTAGCCCGGAT
*
65918342 GAGCTTCCTGATT-ATGGCTCTTTC-GAGCT-TCTAGTTATATAGCCCGGAT
1 AAGCTTCCTGATTAATGGCTC-TTCAGAGCTATC-AGTTAT-TAGCCCGGAT
65918391 AAGCTTCCTG
1 AAGCTTCCTG
65918401 TTACAAGGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
47 2 0.04
48 17 0.34
49 31 0.62
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (49 bp):
AAGCTTCCTGATTAATGGCTCTTCAGAGCTATCAGTTATTAGCCCGGAT
Found at i:65925400 original size:28 final size:27
Alignment explanation
Indices: 65925350--65925457 Score: 139
Period size: 27 Copynumber: 3.9 Consensus size: 27
65925340 GGCTACTAGA
* *
65925350 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
65925377 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
65925404 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
65925432 -CAGATAATTTGTGGCATAGCCACCAG
1 ACAGATAA--TGTGGCAGAGCCACCAG
65925458 GATGCTTCCT
Statistics
Matches: 73, Mismatches: 3, Indels: 9
0.86 0.04 0.11
Matches are distributed among these distances:
26 1 0.01
27 39 0.53
28 33 0.45
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:65925430 original size:55 final size:54
Alignment explanation
Indices: 65925347--65925457 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 54
65925337 CATGGCTACT
*
65925347 AGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCACC
1 AGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCACC
* * *
65925401 AGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACC
65925456 AG
1 AG
65925458 GATGCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 17 0.33
55 34 0.67
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
AGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACC
Found at i:65925892 original size:16 final size:16
Alignment explanation
Indices: 65925871--65925907 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
65925861 CCCCAAAATA
65925871 TCGGCATTTCGACATT
1 TCGGCATTTCGACATT
* *
65925887 TCGGCATTTTGACTTT
1 TCGGCATTTCGACATT
65925903 TCGGC
1 TCGGC
65925908 TTTTGCCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.24, G:0.22, T:0.41
Consensus pattern (16 bp):
TCGGCATTTCGACATT
Found at i:65928217 original size:26 final size:27
Alignment explanation
Indices: 65928157--65928209 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
65928147 CCAAATTGAT
*
65928157 AAATGACTATTATGCCCCTATGAGGTA
1 AAATGACTATTATGCCCCTATGAGATA
*
65928184 AAATGACTATTATGCCCTTATGAGAT
1 AAATGACTATTATGCCCCTATGAGAT
65928210 GTATGACTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (27 bp):
AAATGACTATTATGCCCCTATGAGATA
Found at i:65940191 original size:40 final size:40
Alignment explanation
Indices: 65940125--65940291 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
65940115 AAATTGAATG
* * *
65940125 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
65940164 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
65940204 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
65940244 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
65940284 ATATCCGG
1 ATATCCGG
65940292 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:65946038 original size:46 final size:46
Alignment explanation
Indices: 65945892--65946112 Score: 191
Period size: 46 Copynumber: 4.8 Consensus size: 46
65945882 TCACTTGCAT
* * * ** *
65945892 GAGCTAGTGTAAGACATGTCTGGGACATCCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGA
* * * ** **
65945938 GATCCAATGTAAGACCATGTCTGGGACATGGCATCAGTATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAAGACGA
*
65945986 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACG-A
* *
65946033 -AGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCT-ACGA-GA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGA
*
65946075 TGTG-TCAGTGTAAGACCATGTCTGGGACATGGCATCAG
1 -GAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCAG
65946113 TACAGATATA
Statistics
Matches: 141, Mismatches: 25, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 13 0.09
45 17 0.12
46 60 0.43
47 30 0.21
48 18 0.13
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGACGA
Found at i:65946135 original size:93 final size:93
Alignment explanation
Indices: 65945945--65946158 Score: 226
Period size: 93 Copynumber: 2.3 Consensus size: 93
65945935 TGAGATCCAA
*
65945945 TGTAAGACCATGTCTGGGACATGGCATCAGTATTGAGACGAGTGCTAGTGTAAGACATGTCTGGG
1 TGTAAGACCATGTCTGGGACATGGCATCAGTATCGAGACGAGTGCTAGTGTAAGACATGTCTGGG
*
65946010 ACATGCATCAGCCTCAAGACGTAAGCTAG
66 ACATGCATCAG-CTCAAGACATAAGCTAG
* * *
65946039 TGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGATGTGT-C-AGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCAG-TATCGAGACGAGTGCTAGTGTAAGA-CATGTCTG
* *
65946099 GGACATGGCATCAG-T-ACAGATATACTAGACTTG
64 GGACAT-GCATCAGCTCA-AGACATA--AG-CTAG
**
65946132 TGTAAGACCATGTCTTAGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
65946159 GGATGCCTAA
Statistics
Matches: 102, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
89 1 0.01
90 15 0.15
91 15 0.15
92 22 0.22
93 26 0.25
94 19 0.19
95 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGTATCGAGACGAGTGCTAGTGTAAGACATGTCTGGG
ACATGCATCAGCTCAAGACATAAGCTAG
Found at i:65946153 original size:140 final size:140
Alignment explanation
Indices: 65945893--65946154 Score: 343
Period size: 140 Copynumber: 1.9 Consensus size: 140
65945883 CACTTGCATG
*
65945893 AGCTAGTGTAAGACATGTCTGGGACATCCATCGGCCACATTATGAGATCCAATGTAAGACCATGT
1 AGCTAGTGTAAGACATGTCTGGGACATCCATCGGCCACATGATGAGATCCAATGTAAGACCATGT
** * *
65945958 CTGGGACATGGCATCAGTATTGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC
66 CTGGGACATGGCATCAGTACAGAGACGAGTACTAGTGTAAGACATGTCTGAGACATGCATCAGCC
65946023 TCAAGACGTA
131 TCAAGACGTA
* * * *
65946033 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGTG-T-CAGTGTAAGACCATG
1 AGCTAGTGTAAGACATGTCTGGGACATCCATCGGCCAC-ATGATGAGATCCAATGTAAGACCATG
* * * *
65946095 TCTGGGACATGGCATCAGTACAGATATACTAG-ACTTGTGTAAGACCATGTCTTAGACATG
65 TCTGGGACATGGCATCAGTACAG--AGACGAGTACTAGTGTAAGA-CATGTCTGAGACATG
65946155 GCATGGATGC
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
138 35 0.33
139 11 0.10
140 58 0.55
141 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (140 bp):
AGCTAGTGTAAGACATGTCTGGGACATCCATCGGCCACATGATGAGATCCAATGTAAGACCATGT
CTGGGACATGGCATCAGTACAGAGACGAGTACTAGTGTAAGACATGTCTGAGACATGCATCAGCC
TCAAGACGTA
Found at i:65947605 original size:22 final size:22
Alignment explanation
Indices: 65947577--65947620 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
65947567 AAAGTCTACC
65947577 TAATTCGTCAATTACATATATA
1 TAATTCGTCAATTACATATATA
65947599 TAATTCGTCAATTACATATATA
1 TAATTCGTCAATTACATATATA
65947621 CACTTTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (22 bp):
TAATTCGTCAATTACATATATA
Found at i:65947829 original size:28 final size:28
Alignment explanation
Indices: 65947797--65947858 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
65947787 ATTAAATGAC
65947797 TAATTACATAACCAAAACATATAGGCTT
1 TAATTACATAACCAAAACATATAGGCTT
65947825 TAATTACATAACCAAAACATATAGGCTT
1 TAATTACATAACCAAAACATATAGGCTT
*
65947853 TCATTA
1 TAATTA
65947859 GCCAAAAGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (28 bp):
TAATTACATAACCAAAACATATAGGCTT
Found at i:65950708 original size:40 final size:39
Alignment explanation
Indices: 65950663--65950792 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
65950653 CGGAATACAA
65950663 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
65950703 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
65950743 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
65950783 CCGGATATAA
1 CCGGATATAA
65950793 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:65958760 original size:40 final size:39
Alignment explanation
Indices: 65958715--65958844 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
65958705 CGGAATACAA
65958715 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
65958755 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
65958795 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
65958835 CCGGATATAA
1 CCGGATATAA
65958845 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:65966734 original size:20 final size:20
Alignment explanation
Indices: 65966709--65966779 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
65966699 ATTTTGATAA
*
65966709 ACATGATTTGTATGATATGC
1 ACATGATATGTATGATATGC
*
65966729 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
65966749 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
65966769 ACATGAGATGT
1 ACATGATATGT
65966780 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:65966756 original size:11 final size:11
Alignment explanation
Indices: 65966720--65966774 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
65966710 CATGATTTGT
65966720 ATGATATGCAC
1 ATGATATGCAC
* *
65966731 ATGACATG--T
1 ATGATATGCAC
65966740 ATGATATGCAC
1 ATGATATGCAC
*
65966751 ATGATATG--T
1 ATGATATGCAC
65966760 ATGATATGCAC
1 ATGATATGCAC
65966771 ATGA
1 ATGA
65966775 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:65966876 original size:24 final size:24
Alignment explanation
Indices: 65966819--65966985 Score: 227
Period size: 24 Copynumber: 7.0 Consensus size: 24
65966809 GGAGGAAGTG
65966819 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65966843 -TAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65966866 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
65966890 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65966914 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
65966938 AAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
65966960 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
65966986 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
23 49 0.38
24 64 0.50
25 16 0.12
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:65966888 original size:47 final size:47
Alignment explanation
Indices: 65966819--65966985 Score: 225
Period size: 47 Copynumber: 3.5 Consensus size: 47
65966809 GGAGGAAGTG
65966819 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
65966866 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
65966914 -TAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTATT--AAAGGGCTTATGCCCCAGTTAT
*
65966960 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
65966986 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
47 57 0.53
48 40 0.37
49 11 0.10
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:65966935 original size:71 final size:70
Alignment explanation
Indices: 65966819--65966985 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 70
65966809 GGAGGAAGTG
*
65966819 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTA-TCAAAAGGGCTTATGCCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCC
65966883 CAGTTA
65 CAGTTA
65966889 TCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCC
1 -CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCC
65966954 CAGTTA
65 CAGTTA
*
65966960 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
65966986 ATGATAAAGC
Statistics
Matches: 90, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
70 1 0.01
71 67 0.74
72 22 0.24
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (70 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCC
AGTTA
Found at i:65968255 original size:13 final size:13
Alignment explanation
Indices: 65968237--65968261 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65968227 TAATGGTATA
65968237 TTGAATCCATGAT
1 TTGAATCCATGAT
65968250 TTGAATCCATGA
1 TTGAATCCATGA
65968262 AAATTTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:65969787 original size:48 final size:48
Alignment explanation
Indices: 65969718--65970085 Score: 628
Period size: 48 Copynumber: 7.7 Consensus size: 48
65969708 TCGTAGTGTA
* * * ** *
65969718 TATATGTGATAAGGCCTAATGGCCGATGTGAAATACATGTGTGTTATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
65969766 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
65969814 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
65969862 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
65969910 TATATGTGGTAAAGCCGAATGGCTAATGTGAAAGACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
65969958 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACACGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * *
65970006 TATATGTGGTAAAGCAGAATGGCTAATGTGAAATATACGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
65970054 AATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAA
65970086 TGTTGTAACA
Statistics
Matches: 307, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 307 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:65970180 original size:37 final size:37
Alignment explanation
Indices: 65970130--65970252 Score: 237
Period size: 37 Copynumber: 3.3 Consensus size: 37
65970120 GGAAATATAT
65970130 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
65970167 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
65970204 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
65970241 TCCGGGTAAGAC
1 TCCGGGTAAGAC
65970253 TTCGTAATAA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 85 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:65972234 original size:40 final size:40
Alignment explanation
Indices: 65972171--65972471 Score: 281
Period size: 40 Copynumber: 7.5 Consensus size: 40
65972161 TGAATGATAC
* * **
65972171 CCGGGCTAAGTCCTGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTG-ATATAT
* * * ** *
65972211 CCGGGCTAAGACCCGAAG-GCATTTGTG-TGAGTTCTTATAC
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCT-AG-TGATATAT
** * * *
65972251 CCGGGTTAAGACCCGAAG-GCAATT-GTGCTTGTGGTTATAT
1 CCGGACTAAGTCCCGAAGAGC-ATTCGTGCTAGT-GATATAT
* *
65972291 CC-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
65972330 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
65972370 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTAT
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* **
65972410 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
* *
65972450 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGACTAAGTCCCGAAGAGCA
65972472 ATCATGCTGG
Statistics
Matches: 232, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
39 23 0.10
40 204 0.88
41 5 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATAT
Found at i:65972359 original size:80 final size:80
Alignment explanation
Indices: 65972286--65972471 Score: 311
Period size: 80 Copynumber: 2.3 Consensus size: 80
65972276 TGCTTGTGGT
65972286 TATATCC-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
1 TATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
65972350 CATTCGTGCTAGTGA
66 CATTCGTGCTAGTGA
*
65972365 TGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
1 TATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
65972430 CATTCGTGCTAGTGA
66 CATTCGTGCTAGTGA
** * * *
65972445 TGCATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGACTAAGTTCCGAAGAGCA
65972472 ATCATGCTGG
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 6 0.06
80 95 0.94
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAG
CATTCGTGCTAGTGA
Found at i:65975829 original size:42 final size:42
Alignment explanation
Indices: 65975718--65975830 Score: 163
Period size: 43 Copynumber: 2.7 Consensus size: 42
65975708 TACCATACCA
*
65975718 ATGCCATATCCCAAATATGGTCTTACATGAAATCTCCTATCG
1 ATGCCATATCCCAAATATGGTCTTACACGAAATCTCCTATCG
* * * *
65975760 ATGCCAATAGCCCAACTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCC-ATATCCCAAATATGGTCTTACACGAAATCTCCTATCG
*
65975803 ATGCCATATCCCAAATATTGTCTTACAC
1 ATGCCATATCCCAAATATGGTCTTACAC
65975831 ATCATCTCAG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 25 0.40
43 37 0.60
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTACACGAAATCTCCTATCG
Found at i:65977480 original size:44 final size:44
Alignment explanation
Indices: 65977322--65977496 Score: 210
Period size: 44 Copynumber: 3.9 Consensus size: 44
65977312 ATATTTGGGC
65977322 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * * *
65977366 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-T-GCGA
*
65977415 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *
65977459 ACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65977497 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 1 0.01
44 40 0.36
45 2 0.02
46 32 0.29
47 31 0.28
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:65980497 original size:29 final size:29
Alignment explanation
Indices: 65980411--65980494 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
65980401 CATAGTATCG
* * * *
65980411 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
65980441 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
65980470 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
65980495 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:65980498 original size:14 final size:15
Alignment explanation
Indices: 65980420--65980498 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
65980410 GTATCTTGGG
*
65980420 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
65980435 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
65980450 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
65980464 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
65980479 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
65980493 TTTCTT
1 TTTCTT
65980499 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:65982909 original size:46 final size:45
Alignment explanation
Indices: 65982856--65983029 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
65982846 TATTTGGGCA
65982856 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
**** * *
65982902 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GCGAAG
*
65982948 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
65982993 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65983030 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 32 0.30
46 65 0.61
47 1 0.01
48 3 0.03
49 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:65983021 original size:91 final size:92
Alignment explanation
Indices: 65982852--65983022 Score: 299
Period size: 91 Copynumber: 1.9 Consensus size: 92
65982842 AGGATATTTG
* *
65982852 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65982917 TTGAGTCCGAGTTCGGAGATGTAACTA
66 TTGAGTCCGAGTTCGGAGATGTAACTA
* *
65982944 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
65983008 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
65983023 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
91 41 0.55
92 34 0.45
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGGAGATGTAACTA
Found at i:65985246 original size:47 final size:47
Alignment explanation
Indices: 65985168--65985507 Score: 509
Period size: 47 Copynumber: 7.2 Consensus size: 47
65985158 CTTCGGGACA
* * * * *
65985168 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTAGGTCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
* *
65985215 TATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
* * * *
65985262 TATCACATATATACACTTCCACATTCATCACGTTGGCCACTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
* *
65985309 TATCACATATATATGCTTTCACATTCATCACATTGGCCACTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
*
65985356 TATCACATATATATATTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
* * *
65985403 TATCACATATATATGCTTTCACATTCATCATATTGGCCACTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
* *
65985450 TATCACATATATATATTTTCACATTCATCACATTCGCCATTCGGCCT
1 TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
65985497 TATCACATATA
1 TATCACATATA
65985508 CATATCTTGT
Statistics
Matches: 268, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 268 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.36
Consensus pattern (47 bp):
TATCACATATATATACTTTCACATTCATCACATTGGCCATTCGGCCT
Found at i:65998506 original size:7 final size:7
Alignment explanation
Indices: 65998496--65998532 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
65998486 ATGAATGATT
65998496 AGGGATG
1 AGGGATG
65998503 AGGGATG
1 AGGGATG
65998510 AGGGATG
1 AGGGATG
65998517 AGGGATG
1 AGGGATG
65998524 AGGGATG
1 AGGGATG
65998531 AG
1 AG
65998533 TAGAAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.30, C:0.00, G:0.57, T:0.14
Consensus pattern (7 bp):
AGGGATG
Found at i:66010920 original size:9 final size:9
Alignment explanation
Indices: 66010906--66010933 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
66010896 ATAGTATATG
66010906 CTTCATAAA
1 CTTCATAAA
66010915 CTTCATAAA
1 CTTCATAAA
66010924 CTTCATAAA
1 CTTCATAAA
66010933 C
1 C
66010934 ATCCAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (9 bp):
CTTCATAAA
Found at i:66016556 original size:24 final size:27
Alignment explanation
Indices: 66016484--66016556 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
66016474 AATGGAAGTA
66016484 AAATAAAAAGTACTTTAACAAGATAAAT
1 AAATAAAAAGTACTTTAA-AAGATAAAT
* *
66016512 AAATATAAAAGTAAATATAAAA-AT-AAT
1 AAATA-AAAAGT-ACTTTAAAAGATAAAT
66016539 AAATAAAAAGT-CTTTAAA
1 AAATAAAAAGTACTTTAAA
66016557 CATCGTCATC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 5 0.13
26 6 0.15
27 8 0.21
28 7 0.18
29 8 0.21
30 5 0.13
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.26
Consensus pattern (27 bp):
AAATAAAAAGTACTTTAAAAGATAAAT
Found at i:66025373 original size:28 final size:28
Alignment explanation
Indices: 66025341--66025438 Score: 142
Period size: 28 Copynumber: 3.5 Consensus size: 28
66025331 TATGGTACTC
66025341 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
*
66025369 AGTGTACGAAATATTGAGAATGGCACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* *
66025397 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
* * *
66025425 CGTGTGCAAAATAT
1 AGTGTACGAAATAT
66025439 CGAATGATTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:66025651 original size:43 final size:42
Alignment explanation
Indices: 66025598--66025678 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
66025588 TGAATAATAT
** * *
66025598 TATCGGGCTTCGGGCCTAGTAGGCTATAATGCCGGTGAAATGA
1 TATCGGGCTTCAAGCCTAGCAGGC-AAAATGCCGGTGAAATGA
66025641 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCGGTGAA
1 TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCGGTGAA
66025679 TGAGTTTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 13 0.38
43 21 0.62
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (42 bp):
TATCGGGCTTCAAGCCTAGCAGGCAAAATGCCGGTGAAATGA
Found at i:66030219 original size:29 final size:29
Alignment explanation
Indices: 66030187--66030280 Score: 134
Period size: 29 Copynumber: 3.2 Consensus size: 29
66030177 CGTAACACCC
* * **
66030187 AGTGCCGTATTTTTCCAGCTTGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
* *
66030216 AGTGCCAAATATTTCCAGCACGTACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
66030245 AGTGCCATATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTT
66030274 AGTGCCA
1 AGTGCCA
66030281 ATCTCGTCAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCACGCACACTT
Found at i:66038244 original size:29 final size:29
Alignment explanation
Indices: 66038211--66038340 Score: 183
Period size: 29 Copynumber: 4.6 Consensus size: 29
66038201 CCTCCGAACT
** * * *
66038211 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
66038240 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66038269 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66038298 CGCACACTTA--GCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
66038325 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
66038341 ATCTCGTCAC
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 27 0.30
29 63 0.70
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:66053811 original size:28 final size:28
Alignment explanation
Indices: 66053771--66053877 Score: 124
Period size: 28 Copynumber: 3.8 Consensus size: 28
66053761 GCAATCAAAT
* *
66053771 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
66053799 ATGGCACTTAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* ** *
66053827 ATGGCACTTAATGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * * *
66053855 ATGACACTTCGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
66053878 CGAATGATTC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:66054090 original size:43 final size:42
Alignment explanation
Indices: 66054032--66054117 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 42
66054022 GCTGGTGAAT
* ** *
66054032 AATGTTATCGGGCTTCGGGTCTAGCAGGAT-ATAATGCCGGTGA
1 AATGATATCGGGCTTCAAGCCTAGCA-GATGA-AATGCCGGTGA
66054075 AATGATATCGGGCTTCAAGCCTAGCAGATGAAATGCCGGTGA
1 AATGATATCGGGCTTCAAGCCTAGCAGATGAAATGCCGGTGA
66054117 A
1 A
66054118 TGAGTTCAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 15 0.39
43 23 0.61
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (42 bp):
AATGATATCGGGCTTCAAGCCTAGCAGATGAAATGCCGGTGA
Found at i:66054140 original size:41 final size:42
Alignment explanation
Indices: 66054050--66054142 Score: 102
Period size: 41 Copynumber: 2.2 Consensus size: 42
66054040 CGGGCTTCGG
* * *
66054050 GTCTAGCAGGATATAATGCCGGTGAAATGATATCGGGCTTCAA
1 GTCTAGCA-GATATAATGCCGGTGAAATGATATCAGACTTAAA
*
66054093 GCCTAGCAGATGA-AATGCCGGTG-AATGAGT-TCAGACTTAAA
1 GTCTAGCAGAT-ATAATGCCGGTGAAATGA-TATCAGACTTAAA
66054134 GTCTAGCAG
1 GTCTAGCAG
66054143 GCTTCGTGCC
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
41 21 0.49
42 14 0.33
43 8 0.19
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (42 bp):
GTCTAGCAGATATAATGCCGGTGAAATGATATCAGACTTAAA
Found at i:66054198 original size:40 final size:41
Alignment explanation
Indices: 66054052--66054197 Score: 127
Period size: 40 Copynumber: 3.5 Consensus size: 41
66054042 GGCTTCGGGT
*
66054052 CTAGCAGGATATAATGCCGGTGAAATG-ATATCGGGCTTCAAGC
1 CTAGCAGGATA-AATGCCGGTG-AATGAAT-TCGGGCTTAAAGC
* * * *
66054095 CTAGCA-GATGAAATGCCGGTGAATGAGTTCAGACTTAAAGT
1 CTAGCAGGAT-AAATGCCGGTGAATGAATTCGGGCTTAAAGC
* *** * *
66054136 CTAGCAGGCTTCGTGCCGGTG-ATGAATTCGGGTTTAAAAC
1 CTAGCAGGATAAATGCCGGTGAATGAATTCGGGCTTAAAGC
*
66054176 CTAGCAGGCTAAATGCCGGTGA
1 CTAGCAGGATAAATGCCGGTGA
66054198 TTTGATAAAA
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
40 31 0.38
41 27 0.33
42 16 0.20
43 7 0.09
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (41 bp):
CTAGCAGGATAAATGCCGGTGAATGAATTCGGGCTTAAAGC
Found at i:66056325 original size:48 final size:48
Alignment explanation
Indices: 66056241--66056599 Score: 433
Period size: 48 Copynumber: 7.6 Consensus size: 48
66056231 AATGTGCGTA
* * *
66056241 TGTAAGACCATGTTTGGGACA----ATCGACGATGATATATGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
* * * *
66056285 TGTAAGACAATGTCTGGGACATGGCATCGACGATGATATATGTGCCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
** *
66056333 TGTAAGACCATGTCTGGGACATGGCATCGGAAATGATATATGTGCTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
* *
66056381 TGTAAGACCATGTCTGGGACATGGCGTCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
* * * ***
66056429 TGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATGTTTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
* * *
66056477 TGTAAGACCATGTCTGGGACATGGCATGGGCGATGATATGTG-GATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTT-G
* * *
66056525 TGTAAGACCATGTCTGGGACATGGCATGGGCGATGATATGTG-GATTCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTT-G
*
66056573 TGTAAGACCATGTCGGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
66056600 TGGTACTTTA
Statistics
Matches: 283, Mismatches: 27, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
44 19 0.07
47 1 0.00
48 263 0.93
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTTG
Found at i:66059493 original size:19 final size:19
Alignment explanation
Indices: 66059469--66059516 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
66059459 TGGCCTAGGG
66059469 ACACGGGCGTGTCAATGGC
1 ACACGGGCGTGTCAATGGC
66059488 ACACGGGCGTGTCAATGGC
1 ACACGGGCGTGTCAATGGC
*
66059507 ACACAGGCGT
1 ACACGGGCGT
66059517 CTCCTTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.15
Consensus pattern (19 bp):
ACACGGGCGTGTCAATGGC
Found at i:66060905 original size:31 final size:31
Alignment explanation
Indices: 66060870--66060934 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
66060860 CAGTGTTGGG
*
66060870 AATGCTCGACCTGATAGATCATGATGTCCCC
1 AATGCTCGACCCGATAGATCATGATGTCCCC
66060901 AATGCTCGACCCGATAGATCATGATGTCCCC
1 AATGCTCGACCCGATAGATCATGATGTCCCC
66060932 AAT
1 AAT
66060935 ATGGGAGATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (31 bp):
AATGCTCGACCCGATAGATCATGATGTCCCC
Found at i:66063046 original size:17 final size:19
Alignment explanation
Indices: 66063004--66063047 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66062994 ATGAAATTTT
* *
66063004 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
66063023 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
66063041 AA-TATTA
1 AATTATTA
66063048 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:66064894 original size:28 final size:28
Alignment explanation
Indices: 66064862--66064920 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
66064852 GCGTAGATCA
66064862 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
66064890 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
66064918 CGA
1 CGA
66064921 TATACCCTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:66067346 original size:17 final size:19
Alignment explanation
Indices: 66067304--66067347 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
66067294 ATGAAATTTT
* *
66067304 AATTAGTATTATGAGATAA
1 AATTATTATTATCAGATAA
66067323 AATTATTATTATCAGA-AA
1 AATTATTATTATCAGATAA
66067341 AA-TATTA
1 AATTATTA
66067348 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.09, T:0.39
Consensus pattern (19 bp):
AATTATTATTATCAGATAA
Found at i:66069187 original size:28 final size:28
Alignment explanation
Indices: 66069155--66069213 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
66069145 GCGTAGATCA
66069155 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
66069183 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
66069211 CGA
1 CGA
66069214 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:66073386 original size:48 final size:48
Alignment explanation
Indices: 66073315--66073734 Score: 558
Period size: 48 Copynumber: 8.8 Consensus size: 48
66073305 ACCATGCTAA
66073315 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
66073363 ATGTGCCTGTGTAAGACCATGTCTAGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
*
66073411 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
66073459 ATGTGCCTGTGTTAGACCATGTCTGGGGCATGGCATCGGTGATGGTAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
66073507 ATGTGCTTATCTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
66073555 ATCTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
66073603 GTGTGCCAGAGTATGACCATGTTTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * * *
66073651 GTGTGCCAGTGTAAGATCATGTCTAGGACATGGCATCGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* ** *
66073699 GTG-GATTCATGTAAGACCATGTC-GAGGACATGGCAT
1 ATGTGCCT-GTGTAAGACCATGTCTG-GGACATGGCAT
66073735 TGGTACTTTA
Statistics
Matches: 327, Mismatches: 41, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
47 2 0.01
48 324 0.99
49 1 0.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:66076649 original size:93 final size:92
Alignment explanation
Indices: 66076537--66076707 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
66076527 GCCCATAAGT
* *
66076537 GAACTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
66076602 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
66076629 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACT-GGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
66076694 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
66076708 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 5 0.07
93 69 0.93
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:66076703 original size:46 final size:46
Alignment explanation
Indices: 66076529--66076703 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
66076519 TGTAACCTGC
* *
66076529 CCATAAGTGAACT-GGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
66076574 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
66076620 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
66076667 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
66076704 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 13 0.12
46 56 0.51
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Done.